Multiple sequence alignment - TraesCS4A01G378500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G378500 chr4A 100.000 3146 0 0 1 3146 656029011 656032156 0.000000e+00 5810.0
1 TraesCS4A01G378500 chr4A 95.638 2201 77 8 1 2183 656248755 656250954 0.000000e+00 3515.0
2 TraesCS4A01G378500 chr4A 94.942 1285 36 6 1 1257 656471633 656472916 0.000000e+00 1986.0
3 TraesCS4A01G378500 chr4A 93.355 903 31 3 2273 3146 656473926 656474828 0.000000e+00 1308.0
4 TraesCS4A01G378500 chr4A 94.034 704 29 4 1492 2183 656472923 656473625 0.000000e+00 1055.0
5 TraesCS4A01G378500 chr4A 94.487 653 19 5 2273 2913 656251254 656251901 0.000000e+00 990.0
6 TraesCS4A01G378500 chr4A 77.527 1286 239 29 919 2183 656499531 656498275 0.000000e+00 728.0
7 TraesCS4A01G378500 chr4A 77.660 1222 232 30 985 2183 650831042 650832245 0.000000e+00 706.0
8 TraesCS4A01G378500 chr4A 76.988 1182 235 26 1017 2183 656480032 656481191 2.650000e-180 641.0
9 TraesCS4A01G378500 chr4A 78.579 901 157 26 1291 2177 655659102 655659980 2.120000e-156 562.0
10 TraesCS4A01G378500 chr4A 92.735 234 15 1 1 232 691661689 691661456 1.400000e-88 337.0
11 TraesCS4A01G378500 chr4A 90.038 261 9 1 2903 3146 656257103 656257363 3.910000e-84 322.0
12 TraesCS4A01G378500 chr4A 94.012 167 8 1 2602 2768 656486622 656486786 5.210000e-63 252.0
13 TraesCS4A01G378500 chr4A 94.815 135 7 0 2602 2736 655469522 655469656 8.840000e-51 211.0
14 TraesCS4A01G378500 chr4A 82.297 209 21 8 2954 3146 656486807 656487015 1.940000e-37 167.0
15 TraesCS4A01G378500 chr4A 96.296 54 2 0 2183 2236 656473659 656473712 4.320000e-14 89.8
16 TraesCS4A01G378500 chr4A 94.444 54 3 0 2183 2236 656250988 656251041 2.010000e-12 84.2
17 TraesCS4A01G378500 chr4A 81.081 111 13 5 2954 3056 655469692 655469802 7.230000e-12 82.4
18 TraesCS4A01G378500 chr4A 100.000 37 0 0 2234 2270 656031106 656031142 5.630000e-08 69.4
19 TraesCS4A01G378500 chr4A 100.000 35 0 0 2234 2268 656250856 656250890 7.280000e-07 65.8
20 TraesCS4A01G378500 chr4A 100.000 35 0 0 2234 2268 656473527 656473561 7.280000e-07 65.8
21 TraesCS4A01G378500 chr7D 94.084 1386 75 4 803 2183 44538096 44539479 0.000000e+00 2098.0
22 TraesCS4A01G378500 chr7D 78.496 1223 220 31 985 2183 43169430 43168227 0.000000e+00 761.0
23 TraesCS4A01G378500 chr7D 91.684 481 30 2 2288 2768 44539779 44540249 0.000000e+00 658.0
24 TraesCS4A01G378500 chr7D 90.088 454 28 7 325 768 44537574 44538020 9.790000e-160 573.0
25 TraesCS4A01G378500 chr7D 90.948 232 21 0 1 232 63275948 63276179 2.360000e-81 313.0
26 TraesCS4A01G378500 chr7D 83.529 255 39 3 1924 2177 44580163 44579911 5.250000e-58 235.0
27 TraesCS4A01G378500 chr7D 84.848 198 19 7 2954 3140 44540270 44540467 4.140000e-44 189.0
28 TraesCS4A01G378500 chr7D 96.000 50 2 0 2183 2232 44539513 44539562 7.230000e-12 82.4
29 TraesCS4A01G378500 chr7D 100.000 37 0 0 2234 2270 44539392 44539428 5.630000e-08 69.4
30 TraesCS4A01G378500 chr7A 93.357 1385 88 4 800 2183 47007078 47008459 0.000000e+00 2045.0
31 TraesCS4A01G378500 chr7A 77.176 1310 244 33 910 2180 47283032 47284325 0.000000e+00 712.0
32 TraesCS4A01G378500 chr7A 92.742 496 26 2 2273 2768 47008762 47009247 0.000000e+00 708.0
33 TraesCS4A01G378500 chr7A 88.300 453 27 15 323 770 47006580 47007011 1.290000e-143 520.0
34 TraesCS4A01G378500 chr7A 79.007 705 114 19 1502 2183 47001062 47001755 4.780000e-123 451.0
35 TraesCS4A01G378500 chr7A 94.086 186 8 3 2787 2970 431989279 431989095 2.390000e-71 279.0
36 TraesCS4A01G378500 chr7A 85.714 203 19 6 2954 3146 47009268 47009470 4.110000e-49 206.0
37 TraesCS4A01G378500 chr7A 96.000 50 2 0 2183 2232 47008493 47008542 7.230000e-12 82.4
38 TraesCS4A01G378500 chrUn 77.732 1226 218 36 985 2181 289666304 289667503 0.000000e+00 701.0
39 TraesCS4A01G378500 chrUn 77.551 1176 233 21 1020 2183 48866858 48865702 0.000000e+00 680.0
40 TraesCS4A01G378500 chrUn 75.745 1241 234 48 985 2182 48987479 48986263 2.120000e-156 562.0
41 TraesCS4A01G378500 chr3D 74.495 1039 212 35 997 2012 9132093 9131085 4.890000e-108 401.0
42 TraesCS4A01G378500 chr3D 89.655 232 24 0 1 232 33847374 33847605 2.370000e-76 296.0
43 TraesCS4A01G378500 chr4B 93.966 232 14 0 1 232 16673018 16673249 4.990000e-93 351.0
44 TraesCS4A01G378500 chr4B 92.308 234 16 2 1 233 560192537 560192769 6.500000e-87 331.0
45 TraesCS4A01G378500 chr4B 90.086 232 23 0 1 232 637635841 637635610 5.100000e-78 302.0
46 TraesCS4A01G378500 chr4B 89.224 232 20 3 1 232 636457539 636457765 5.140000e-73 285.0
47 TraesCS4A01G378500 chr4B 92.708 192 13 1 2764 2954 113961090 113961281 3.090000e-70 276.0
48 TraesCS4A01G378500 chr3B 73.878 980 206 32 997 1955 11475349 11474399 2.320000e-91 346.0
49 TraesCS4A01G378500 chr2B 93.534 232 15 0 1 232 764546241 764546010 2.320000e-91 346.0
50 TraesCS4A01G378500 chr2B 94.972 179 7 2 2777 2954 174794999 174794822 2.390000e-71 279.0
51 TraesCS4A01G378500 chr1B 93.534 232 15 0 1 232 91537520 91537751 2.320000e-91 346.0
52 TraesCS4A01G378500 chr1B 92.672 232 16 1 1 232 554791021 554790791 1.810000e-87 333.0
53 TraesCS4A01G378500 chr1B 92.241 232 18 0 1 232 98561005 98560774 2.340000e-86 329.0
54 TraesCS4A01G378500 chr5B 93.103 232 15 1 1 232 92839975 92840205 3.890000e-89 339.0
55 TraesCS4A01G378500 chr5B 92.672 232 17 0 1 232 419090109 419090340 5.030000e-88 335.0
56 TraesCS4A01G378500 chr5B 91.342 231 20 0 2 232 231006723 231006953 1.820000e-82 316.0
57 TraesCS4A01G378500 chr3A 75.030 829 155 38 1291 2106 11865560 11866349 1.400000e-88 337.0
58 TraesCS4A01G378500 chr7B 92.241 232 18 0 1 232 529677218 529676987 2.340000e-86 329.0
59 TraesCS4A01G378500 chr7B 89.700 233 24 0 1 233 526709878 526710110 6.600000e-77 298.0
60 TraesCS4A01G378500 chr2D 89.744 234 23 1 1 233 491196635 491196402 6.600000e-77 298.0
61 TraesCS4A01G378500 chr6D 89.655 232 24 0 1 232 417457238 417457469 2.370000e-76 296.0
62 TraesCS4A01G378500 chr6D 88.462 234 19 2 1 233 327733249 327733023 3.090000e-70 276.0
63 TraesCS4A01G378500 chr6D 83.830 235 36 2 1 233 413818315 413818081 4.080000e-54 222.0
64 TraesCS4A01G378500 chr5D 89.224 232 25 0 1 232 374775291 374775060 1.100000e-74 291.0
65 TraesCS4A01G378500 chr5D 94.505 182 8 2 2783 2962 92111541 92111722 2.390000e-71 279.0
66 TraesCS4A01G378500 chr4D 88.511 235 27 0 1 235 326604563 326604329 5.140000e-73 285.0
67 TraesCS4A01G378500 chr1A 88.793 232 26 0 1 232 548224400 548224631 5.140000e-73 285.0
68 TraesCS4A01G378500 chr1A 87.654 243 26 4 1 241 117789411 117789651 2.390000e-71 279.0
69 TraesCS4A01G378500 chr1D 95.480 177 6 2 2779 2955 178466297 178466471 6.640000e-72 281.0
70 TraesCS4A01G378500 chr1D 95.455 176 7 1 2786 2961 360358220 360358394 2.390000e-71 279.0
71 TraesCS4A01G378500 chr1D 87.179 234 23 2 1 234 290175572 290175346 3.110000e-65 259.0
72 TraesCS4A01G378500 chr6A 92.105 190 11 3 2765 2954 183365724 183365909 6.690000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G378500 chr4A 656029011 656032156 3145 False 2939.700000 5810 100.00000 1 3146 2 chr4A.!!$F6 3145
1 TraesCS4A01G378500 chr4A 656248755 656251901 3146 False 1163.750000 3515 96.14225 1 2913 4 chr4A.!!$F7 2912
2 TraesCS4A01G378500 chr4A 656471633 656474828 3195 False 900.920000 1986 95.72540 1 3146 5 chr4A.!!$F8 3145
3 TraesCS4A01G378500 chr4A 656498275 656499531 1256 True 728.000000 728 77.52700 919 2183 1 chr4A.!!$R1 1264
4 TraesCS4A01G378500 chr4A 650831042 650832245 1203 False 706.000000 706 77.66000 985 2183 1 chr4A.!!$F1 1198
5 TraesCS4A01G378500 chr4A 656480032 656481191 1159 False 641.000000 641 76.98800 1017 2183 1 chr4A.!!$F4 1166
6 TraesCS4A01G378500 chr4A 655659102 655659980 878 False 562.000000 562 78.57900 1291 2177 1 chr4A.!!$F2 886
7 TraesCS4A01G378500 chr7D 43168227 43169430 1203 True 761.000000 761 78.49600 985 2183 1 chr7D.!!$R1 1198
8 TraesCS4A01G378500 chr7D 44537574 44540467 2893 False 611.633333 2098 92.78400 325 3140 6 chr7D.!!$F2 2815
9 TraesCS4A01G378500 chr7A 47006580 47009470 2890 False 712.280000 2045 91.22260 323 3146 5 chr7A.!!$F3 2823
10 TraesCS4A01G378500 chr7A 47283032 47284325 1293 False 712.000000 712 77.17600 910 2180 1 chr7A.!!$F2 1270
11 TraesCS4A01G378500 chr7A 47001062 47001755 693 False 451.000000 451 79.00700 1502 2183 1 chr7A.!!$F1 681
12 TraesCS4A01G378500 chrUn 289666304 289667503 1199 False 701.000000 701 77.73200 985 2181 1 chrUn.!!$F1 1196
13 TraesCS4A01G378500 chrUn 48865702 48866858 1156 True 680.000000 680 77.55100 1020 2183 1 chrUn.!!$R1 1163
14 TraesCS4A01G378500 chrUn 48986263 48987479 1216 True 562.000000 562 75.74500 985 2182 1 chrUn.!!$R2 1197
15 TraesCS4A01G378500 chr3D 9131085 9132093 1008 True 401.000000 401 74.49500 997 2012 1 chr3D.!!$R1 1015
16 TraesCS4A01G378500 chr3B 11474399 11475349 950 True 346.000000 346 73.87800 997 1955 1 chr3B.!!$R1 958
17 TraesCS4A01G378500 chr3A 11865560 11866349 789 False 337.000000 337 75.03000 1291 2106 1 chr3A.!!$F1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.871722 CGGAAACCAGAAATCACGCA 59.128 50.000 0.00 0.0 0.00 5.24 F
285 292 1.304381 GTTGGATGGGCTGAGGCAA 60.304 57.895 8.68 0.0 40.87 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1178 1264 0.034186 GTGTTGGATGATGGGGAGCA 60.034 55.0 0.0 0.0 0.00 4.26 R
2241 2499 0.036022 GCTCCTGGTTCACAGCTTCT 59.964 55.0 0.0 0.0 46.14 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 0.871722 CGGAAACCAGAAATCACGCA 59.128 50.000 0.00 0.00 0.00 5.24
171 172 1.737735 CTCCGCGCATGACACTTGA 60.738 57.895 8.75 0.00 0.00 3.02
175 176 2.094539 CGCATGACACTTGACGCG 59.905 61.111 3.53 3.53 36.47 6.01
285 292 1.304381 GTTGGATGGGCTGAGGCAA 60.304 57.895 8.68 0.00 40.87 4.52
356 363 3.672295 CTCCCGTGCAGAGGAAGGC 62.672 68.421 9.58 0.00 0.00 4.35
394 401 3.042059 TCTAATTTCTCCGCCCTACCT 57.958 47.619 0.00 0.00 0.00 3.08
1361 1473 1.866483 ATCTGCAATCCAGCCACCCA 61.866 55.000 0.00 0.00 41.50 4.51
1406 1528 0.250124 CCACTACGGCCACACTTCAA 60.250 55.000 2.24 0.00 0.00 2.69
1423 1546 6.873605 ACACTTCAATTTCATCGACATAGTCA 59.126 34.615 0.00 0.00 32.09 3.41
1432 1555 4.881850 TCATCGACATAGTCAGCTTCTACA 59.118 41.667 0.00 0.00 32.09 2.74
1580 1733 1.545582 CCAATGGCCGACAGTTTCAAT 59.454 47.619 0.00 0.00 0.00 2.57
1644 1804 2.495409 CCACCATCGCCGTAGCCTA 61.495 63.158 0.00 0.00 34.57 3.93
1855 2048 3.060000 GGGGTTTTCGCTTCCGGG 61.060 66.667 0.00 0.00 34.56 5.73
1891 2084 1.745489 GAGGCATCACCACCGGTTC 60.745 63.158 2.97 0.00 43.14 3.62
1922 2118 4.785173 TCCAATCTATCCCTAGGATGGT 57.215 45.455 11.48 0.00 43.06 3.55
2082 2281 3.529533 AGAGAGCATGATTTCACTTCCG 58.470 45.455 4.17 0.00 0.00 4.30
2236 2494 8.548721 ACTTCGATGTTGTAACTTCTAAACAAG 58.451 33.333 0.00 5.84 36.23 3.16
2237 2495 8.651391 TTCGATGTTGTAACTTCTAAACAAGA 57.349 30.769 8.42 0.00 36.23 3.02
2250 2508 6.851222 TCTAAACAAGAAGAAGAAGCTGTG 57.149 37.500 0.00 0.00 0.00 3.66
2252 2510 7.047891 TCTAAACAAGAAGAAGAAGCTGTGAA 58.952 34.615 0.00 0.00 0.00 3.18
2253 2511 5.491635 AACAAGAAGAAGAAGCTGTGAAC 57.508 39.130 0.00 0.00 0.00 3.18
2254 2512 3.879892 ACAAGAAGAAGAAGCTGTGAACC 59.120 43.478 0.00 0.00 0.00 3.62
2255 2513 3.845781 AGAAGAAGAAGCTGTGAACCA 57.154 42.857 0.00 0.00 0.00 3.67
2256 2514 3.737850 AGAAGAAGAAGCTGTGAACCAG 58.262 45.455 0.00 0.00 44.53 4.00
2258 2516 2.050144 AGAAGAAGCTGTGAACCAGGA 58.950 47.619 0.00 0.00 41.81 3.86
2259 2517 2.038295 AGAAGAAGCTGTGAACCAGGAG 59.962 50.000 0.00 0.00 41.81 3.69
2261 2519 0.957888 GAAGCTGTGAACCAGGAGCC 60.958 60.000 0.00 0.00 41.81 4.70
2262 2520 1.422161 AAGCTGTGAACCAGGAGCCT 61.422 55.000 0.00 0.00 41.81 4.58
2264 2522 1.298014 CTGTGAACCAGGAGCCTCC 59.702 63.158 1.26 1.26 37.54 4.30
2265 2523 1.461268 TGTGAACCAGGAGCCTCCA 60.461 57.895 14.46 0.00 39.61 3.86
2270 2528 1.283321 GAACCAGGAGCCTCCATTCTT 59.717 52.381 14.46 0.00 39.61 2.52
2271 2529 2.270434 ACCAGGAGCCTCCATTCTTA 57.730 50.000 14.46 0.00 39.61 2.10
2311 2746 0.503117 GTCGCGTGACTCTTTGTGTC 59.497 55.000 21.55 0.00 42.08 3.67
2414 2859 3.127548 AGCAGCAAGTAATTTGATCACCG 59.872 43.478 0.00 0.00 39.21 4.94
2528 2977 2.958355 AGGAGCTTTGCTGTTGCTTTTA 59.042 40.909 0.00 0.00 39.88 1.52
2562 3011 9.424319 GATTTCCTTTCTTTTGGAAGGAATAAC 57.576 33.333 16.53 9.27 42.46 1.89
2769 3218 7.643569 AATCCAGTATACATGCATTGTCAAA 57.356 32.000 5.50 0.00 39.87 2.69
2770 3219 7.643569 ATCCAGTATACATGCATTGTCAAAA 57.356 32.000 5.50 0.00 39.87 2.44
3001 3452 2.628178 AGAAAAGGCTTGGTACTTTGGC 59.372 45.455 0.00 0.00 37.04 4.52
3006 3457 2.026636 AGGCTTGGTACTTTGGCGATAA 60.027 45.455 0.00 0.00 0.00 1.75
3075 3543 5.391736 GCTATCTTGATCAGCATGTTATGGC 60.392 44.000 0.00 0.00 37.40 4.40
3086 3554 2.877097 TGTTATGGCTTGCTGGAAGA 57.123 45.000 13.43 0.00 34.07 2.87
3127 3595 2.295909 TGGTTTGAAGCCTGTGTATTGC 59.704 45.455 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.282449 CCGGTTTCCCTTTATGGTTTTTCT 59.718 41.667 0.00 0.00 0.00 2.52
81 82 1.464687 CGGCTTCTTGCGTGATTTCTG 60.465 52.381 0.00 0.00 44.05 3.02
82 83 0.798776 CGGCTTCTTGCGTGATTTCT 59.201 50.000 0.00 0.00 44.05 2.52
161 162 3.777925 GCGCGCGTCAAGTGTCAT 61.778 61.111 32.35 0.00 0.00 3.06
180 181 0.029567 CGATTAGTCGGAGAGCGCTT 59.970 55.000 13.26 0.58 44.00 4.68
223 224 0.871722 CCTCAACACGGCGAAATCAA 59.128 50.000 16.62 0.00 0.00 2.57
258 265 4.209538 TCAGCCCATCCAACTTAATGATG 58.790 43.478 0.00 0.00 36.49 3.07
285 292 1.580994 GGGGTGGGCTTAAGTGGGAT 61.581 60.000 4.02 0.00 0.00 3.85
394 401 2.014857 CTGGAAGACACGGACGATCTA 58.985 52.381 0.00 0.00 34.07 1.98
435 445 3.767230 CGCGACGGTGCTCTGTTG 61.767 66.667 0.00 10.15 37.39 3.33
653 689 1.699634 TCAAAGCCCAGCAGTAGAAGT 59.300 47.619 0.00 0.00 0.00 3.01
1178 1264 0.034186 GTGTTGGATGATGGGGAGCA 60.034 55.000 0.00 0.00 0.00 4.26
1230 1322 5.930135 ACAGGCCGTATCTTTAGATCATTT 58.070 37.500 0.00 0.00 36.05 2.32
1361 1473 2.113986 GCAGGGGAGCACACTTGT 59.886 61.111 0.00 0.00 0.00 3.16
1406 1528 5.911752 AGAAGCTGACTATGTCGATGAAAT 58.088 37.500 0.00 0.00 34.95 2.17
1423 1546 1.538876 TGGGGTGCCTGTAGAAGCT 60.539 57.895 0.00 0.00 0.00 3.74
1432 1555 2.204136 TCCAGATGTGGGGTGCCT 60.204 61.111 9.38 0.00 45.11 4.75
1495 1648 0.725784 GGCAACTGAAATGCGTCGTG 60.726 55.000 0.00 0.00 44.75 4.35
1580 1733 5.104652 GGGGTAGCAGGAAGATACTTTTGTA 60.105 44.000 0.00 0.00 39.08 2.41
1855 2048 2.092914 CCTCCATCCCTAACAGGTCAAC 60.093 54.545 0.00 0.00 31.93 3.18
1922 2118 2.093816 AGCTCACGCTCATTGATCAGAA 60.094 45.455 0.00 0.00 45.15 3.02
2082 2281 6.064846 TCTTCTTCTTGCATCTCAAACAAC 57.935 37.500 0.00 0.00 33.65 3.32
2236 2494 2.810852 CCTGGTTCACAGCTTCTTCTTC 59.189 50.000 0.00 0.00 46.14 2.87
2237 2495 2.439507 TCCTGGTTCACAGCTTCTTCTT 59.560 45.455 0.00 0.00 46.14 2.52
2241 2499 0.036022 GCTCCTGGTTCACAGCTTCT 59.964 55.000 0.00 0.00 46.14 2.85
2242 2500 0.957888 GGCTCCTGGTTCACAGCTTC 60.958 60.000 4.57 0.00 46.14 3.86
2244 2502 1.835927 GAGGCTCCTGGTTCACAGCT 61.836 60.000 2.15 0.00 46.14 4.24
2245 2503 1.376553 GAGGCTCCTGGTTCACAGC 60.377 63.158 2.15 0.00 46.14 4.40
2247 2505 0.842030 ATGGAGGCTCCTGGTTCACA 60.842 55.000 32.28 11.66 37.46 3.58
2248 2506 0.329596 AATGGAGGCTCCTGGTTCAC 59.670 55.000 32.28 5.66 37.46 3.18
2249 2507 0.620556 GAATGGAGGCTCCTGGTTCA 59.379 55.000 32.28 13.20 37.46 3.18
2250 2508 0.915364 AGAATGGAGGCTCCTGGTTC 59.085 55.000 32.28 28.35 37.46 3.62
2252 2510 1.840635 GTAAGAATGGAGGCTCCTGGT 59.159 52.381 32.28 18.15 37.46 4.00
2253 2511 1.141858 GGTAAGAATGGAGGCTCCTGG 59.858 57.143 32.28 0.00 37.46 4.45
2254 2512 2.122768 AGGTAAGAATGGAGGCTCCTG 58.877 52.381 32.28 0.00 37.46 3.86
2255 2513 2.577772 AGGTAAGAATGGAGGCTCCT 57.422 50.000 32.28 15.24 37.46 3.69
2256 2514 4.646572 CAATAGGTAAGAATGGAGGCTCC 58.353 47.826 26.95 26.95 36.96 4.70
2258 2516 3.718956 AGCAATAGGTAAGAATGGAGGCT 59.281 43.478 0.00 0.00 0.00 4.58
2259 2517 4.092116 AGCAATAGGTAAGAATGGAGGC 57.908 45.455 0.00 0.00 0.00 4.70
2261 2519 6.681368 GCCAAAAGCAATAGGTAAGAATGGAG 60.681 42.308 0.00 0.00 42.97 3.86
2262 2520 5.127031 GCCAAAAGCAATAGGTAAGAATGGA 59.873 40.000 0.00 0.00 42.97 3.41
2414 2859 4.023707 AGCAATCAGACACAAAACAGTAGC 60.024 41.667 0.00 0.00 0.00 3.58
2467 2916 5.049680 GTCAATGAAAGAAAGTACTTGCCGA 60.050 40.000 9.34 0.00 0.00 5.54
2940 3391 7.781693 AGTCAACTAATAATACTCCCTCCGTTA 59.218 37.037 0.00 0.00 0.00 3.18
3075 3543 1.670406 AGCAGCGTCTTCCAGCAAG 60.670 57.895 0.00 0.00 35.48 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.