Multiple sequence alignment - TraesCS4A01G376500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G376500 chr4A 100.000 3134 0 0 1 3134 650873041 650869908 0.000000e+00 5788.0
1 TraesCS4A01G376500 chr4A 89.130 92 9 1 386 477 651100422 651100332 2.550000e-21 113.0
2 TraesCS4A01G376500 chr4A 87.209 86 4 5 3054 3133 650852890 650852806 1.200000e-14 91.6
3 TraesCS4A01G376500 chr7A 92.577 2344 122 26 807 3134 42963492 42965799 0.000000e+00 3317.0
4 TraesCS4A01G376500 chr7A 93.363 1115 59 3 1008 2116 42541066 42539961 0.000000e+00 1635.0
5 TraesCS4A01G376500 chr7A 81.217 378 47 17 613 971 42791407 42791779 1.840000e-72 283.0
6 TraesCS4A01G376500 chr7A 84.181 177 9 3 1419 1595 736014935 736015092 1.510000e-33 154.0
7 TraesCS4A01G376500 chr7D 91.466 2121 141 25 634 2735 43115426 43117525 0.000000e+00 2878.0
8 TraesCS4A01G376500 chr7D 92.694 1136 68 5 994 2123 42927332 42926206 0.000000e+00 1624.0
9 TraesCS4A01G376500 chr7D 89.199 787 60 13 2360 3134 43117523 43118296 0.000000e+00 959.0
10 TraesCS4A01G376500 chr7D 81.043 211 32 2 2925 3134 43122079 43122282 9.000000e-36 161.0
11 TraesCS4A01G376500 chr7D 85.135 148 12 4 477 614 555001832 555001979 3.260000e-30 143.0
12 TraesCS4A01G376500 chr7D 98.387 62 1 0 1419 1480 204881499 204881438 3.300000e-20 110.0
13 TraesCS4A01G376500 chr3B 99.633 817 3 0 970 1786 142727086 142726270 0.000000e+00 1493.0
14 TraesCS4A01G376500 chr2D 89.506 648 46 11 2360 2994 87981309 87980671 0.000000e+00 800.0
15 TraesCS4A01G376500 chr2D 82.759 319 32 14 2427 2735 87981612 87981307 2.400000e-66 263.0
16 TraesCS4A01G376500 chr2D 93.007 143 9 1 473 614 595164663 595164805 1.140000e-49 207.0
17 TraesCS4A01G376500 chr2D 97.222 72 2 0 1106 1177 87983440 87983369 4.240000e-24 122.0
18 TraesCS4A01G376500 chr6A 87.057 649 55 19 2360 2994 376680615 376679982 0.000000e+00 706.0
19 TraesCS4A01G376500 chr6A 81.191 319 37 14 2427 2735 376680918 376680613 5.230000e-58 235.0
20 TraesCS4A01G376500 chr3A 99.652 287 1 0 1497 1783 640698297 640698583 2.770000e-145 525.0
21 TraesCS4A01G376500 chr1B 86.534 401 44 7 2360 2758 621202527 621202919 1.730000e-117 433.0
22 TraesCS4A01G376500 chr1B 89.655 145 12 2 477 620 397796435 397796293 6.900000e-42 182.0
23 TraesCS4A01G376500 chr6B 87.379 309 17 5 1424 1731 483536362 483536649 5.010000e-88 335.0
24 TraesCS4A01G376500 chr3D 87.580 314 8 6 1419 1731 597186192 597186475 5.010000e-88 335.0
25 TraesCS4A01G376500 chr3D 87.580 314 8 6 1419 1731 597190301 597190584 5.010000e-88 335.0
26 TraesCS4A01G376500 chr4B 90.141 142 13 1 474 614 494694656 494694797 1.920000e-42 183.0
27 TraesCS4A01G376500 chr2A 89.209 139 14 1 477 614 345885428 345885566 4.160000e-39 172.0
28 TraesCS4A01G376500 chr5A 90.000 110 1 4 1549 1658 564766807 564766708 1.960000e-27 134.0
29 TraesCS4A01G376500 chr1A 86.667 120 5 2 1419 1538 351994910 351995018 4.240000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G376500 chr4A 650869908 650873041 3133 True 5788.000000 5788 100.000 1 3134 1 chr4A.!!$R2 3133
1 TraesCS4A01G376500 chr7A 42963492 42965799 2307 False 3317.000000 3317 92.577 807 3134 1 chr7A.!!$F2 2327
2 TraesCS4A01G376500 chr7A 42539961 42541066 1105 True 1635.000000 1635 93.363 1008 2116 1 chr7A.!!$R1 1108
3 TraesCS4A01G376500 chr7D 42926206 42927332 1126 True 1624.000000 1624 92.694 994 2123 1 chr7D.!!$R1 1129
4 TraesCS4A01G376500 chr7D 43115426 43122282 6856 False 1332.666667 2878 87.236 634 3134 3 chr7D.!!$F2 2500
5 TraesCS4A01G376500 chr3B 142726270 142727086 816 True 1493.000000 1493 99.633 970 1786 1 chr3B.!!$R1 816
6 TraesCS4A01G376500 chr2D 87980671 87983440 2769 True 395.000000 800 89.829 1106 2994 3 chr2D.!!$R1 1888
7 TraesCS4A01G376500 chr6A 376679982 376680918 936 True 470.500000 706 84.124 2360 2994 2 chr6A.!!$R1 634
8 TraesCS4A01G376500 chr3D 597186192 597190584 4392 False 335.000000 335 87.580 1419 1731 2 chr3D.!!$F1 312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 495 0.036010 CAAGCCTGTTCGGATCCACT 60.036 55.0 13.41 0.0 33.16 4.00 F
566 567 0.036022 GAAGCTGCTCAGACCCAACT 59.964 55.0 1.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 6009 0.614697 TGGACGAATCTCCCTGCAGA 60.615 55.0 17.39 0.0 0.0 4.26 R
2562 6985 0.674895 GTTCACCTGGCGCTCTTCAT 60.675 55.0 7.64 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.723298 TCATTTTCACCCAAGTTGTAATGT 57.277 33.333 1.45 0.00 0.00 2.71
24 25 7.118496 TCATTTTCACCCAAGTTGTAATGTT 57.882 32.000 1.45 0.00 0.00 2.71
25 26 8.239038 TCATTTTCACCCAAGTTGTAATGTTA 57.761 30.769 1.45 0.00 0.00 2.41
26 27 8.696374 TCATTTTCACCCAAGTTGTAATGTTAA 58.304 29.630 1.45 0.00 0.00 2.01
27 28 9.319143 CATTTTCACCCAAGTTGTAATGTTAAA 57.681 29.630 1.45 3.88 0.00 1.52
28 29 9.892130 ATTTTCACCCAAGTTGTAATGTTAAAA 57.108 25.926 1.45 4.87 0.00 1.52
30 31 6.508777 TCACCCAAGTTGTAATGTTAAAAGC 58.491 36.000 1.45 0.00 0.00 3.51
31 32 6.096987 TCACCCAAGTTGTAATGTTAAAAGCA 59.903 34.615 1.45 0.00 0.00 3.91
32 33 6.420604 CACCCAAGTTGTAATGTTAAAAGCAG 59.579 38.462 1.45 0.00 0.00 4.24
33 34 6.322712 ACCCAAGTTGTAATGTTAAAAGCAGA 59.677 34.615 1.45 0.00 0.00 4.26
34 35 7.015195 ACCCAAGTTGTAATGTTAAAAGCAGAT 59.985 33.333 1.45 0.00 0.00 2.90
35 36 8.519526 CCCAAGTTGTAATGTTAAAAGCAGATA 58.480 33.333 1.45 0.00 0.00 1.98
56 57 8.680903 CAGATATTGCACTTTAGGAAATTGACT 58.319 33.333 0.00 0.00 0.00 3.41
59 60 6.707440 TTGCACTTTAGGAAATTGACTTGA 57.293 33.333 0.00 0.00 0.00 3.02
60 61 6.707440 TGCACTTTAGGAAATTGACTTGAA 57.293 33.333 0.00 0.00 0.00 2.69
61 62 7.288810 TGCACTTTAGGAAATTGACTTGAAT 57.711 32.000 0.00 0.00 0.00 2.57
62 63 8.402798 TGCACTTTAGGAAATTGACTTGAATA 57.597 30.769 0.00 0.00 0.00 1.75
63 64 9.023962 TGCACTTTAGGAAATTGACTTGAATAT 57.976 29.630 0.00 0.00 0.00 1.28
78 79 7.833682 TGACTTGAATATAGAAAAATGCCAGGA 59.166 33.333 0.00 0.00 0.00 3.86
80 81 8.636213 ACTTGAATATAGAAAAATGCCAGGATG 58.364 33.333 0.00 0.00 0.00 3.51
91 92 2.203394 CAGGATGGGAATGGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
93 94 4.603535 GGATGGGAATGGGCCGGG 62.604 72.222 2.18 0.00 0.00 5.73
94 95 3.820843 GATGGGAATGGGCCGGGT 61.821 66.667 2.18 0.00 0.00 5.28
95 96 3.792185 GATGGGAATGGGCCGGGTC 62.792 68.421 2.18 0.00 0.00 4.46
97 98 4.055227 GGGAATGGGCCGGGTCAA 62.055 66.667 2.18 0.00 0.00 3.18
98 99 2.754254 GGAATGGGCCGGGTCAAC 60.754 66.667 2.18 0.00 0.00 3.18
99 100 2.355115 GAATGGGCCGGGTCAACT 59.645 61.111 2.18 0.00 0.00 3.16
100 101 1.749258 GAATGGGCCGGGTCAACTC 60.749 63.158 2.18 0.00 0.00 3.01
101 102 2.478335 GAATGGGCCGGGTCAACTCA 62.478 60.000 2.18 0.00 0.00 3.41
102 103 1.863155 AATGGGCCGGGTCAACTCAT 61.863 55.000 2.18 0.00 0.00 2.90
103 104 2.124695 GGGCCGGGTCAACTCATC 60.125 66.667 2.18 0.00 0.00 2.92
104 105 2.511600 GGCCGGGTCAACTCATCG 60.512 66.667 2.18 0.00 0.00 3.84
107 108 1.823295 CCGGGTCAACTCATCGGAT 59.177 57.895 0.00 0.00 42.94 4.18
108 109 0.249489 CCGGGTCAACTCATCGGATC 60.249 60.000 0.00 0.00 42.94 3.36
109 110 0.595053 CGGGTCAACTCATCGGATCG 60.595 60.000 0.00 0.00 0.00 3.69
110 111 0.460311 GGGTCAACTCATCGGATCGT 59.540 55.000 0.00 0.00 0.00 3.73
111 112 1.134788 GGGTCAACTCATCGGATCGTT 60.135 52.381 0.00 0.00 0.00 3.85
112 113 1.927174 GGTCAACTCATCGGATCGTTG 59.073 52.381 17.31 17.31 38.39 4.10
116 117 1.330655 ACTCATCGGATCGTTGGCCT 61.331 55.000 3.32 0.00 0.00 5.19
117 118 0.598680 CTCATCGGATCGTTGGCCTC 60.599 60.000 3.32 0.00 0.00 4.70
118 119 1.143838 CATCGGATCGTTGGCCTCA 59.856 57.895 3.32 0.00 0.00 3.86
119 120 0.461870 CATCGGATCGTTGGCCTCAA 60.462 55.000 3.32 0.00 0.00 3.02
121 122 1.815421 CGGATCGTTGGCCTCAAGG 60.815 63.158 3.32 0.00 39.37 3.61
131 132 4.101448 CCTCAAGGCCAGGTCCGG 62.101 72.222 5.01 0.00 0.00 5.14
133 134 4.974438 TCAAGGCCAGGTCCGGGT 62.974 66.667 5.01 0.00 0.00 5.28
145 146 4.109675 CCGGGTCGGGCCATTTCT 62.110 66.667 4.39 0.00 44.15 2.52
146 147 2.737881 CCGGGTCGGGCCATTTCTA 61.738 63.158 4.39 0.00 44.15 2.10
147 148 1.450211 CGGGTCGGGCCATTTCTAT 59.550 57.895 4.39 0.00 39.65 1.98
148 149 0.602905 CGGGTCGGGCCATTTCTATC 60.603 60.000 4.39 0.00 39.65 2.08
150 151 0.765510 GGTCGGGCCATTTCTATCCT 59.234 55.000 4.39 0.00 37.17 3.24
151 152 1.143073 GGTCGGGCCATTTCTATCCTT 59.857 52.381 4.39 0.00 37.17 3.36
153 154 3.557264 GGTCGGGCCATTTCTATCCTTAG 60.557 52.174 4.39 0.00 37.17 2.18
154 155 3.323979 GTCGGGCCATTTCTATCCTTAGA 59.676 47.826 4.39 0.00 32.50 2.10
155 156 3.971305 TCGGGCCATTTCTATCCTTAGAA 59.029 43.478 4.39 0.00 41.61 2.10
167 168 8.575649 TTCTATCCTTAGAAAAATGAACACCC 57.424 34.615 0.00 0.00 40.64 4.61
168 169 7.116736 TCTATCCTTAGAAAAATGAACACCCC 58.883 38.462 0.00 0.00 31.40 4.95
169 170 4.412843 TCCTTAGAAAAATGAACACCCCC 58.587 43.478 0.00 0.00 0.00 5.40
170 171 4.140900 TCCTTAGAAAAATGAACACCCCCA 60.141 41.667 0.00 0.00 0.00 4.96
171 172 4.591072 CCTTAGAAAAATGAACACCCCCAA 59.409 41.667 0.00 0.00 0.00 4.12
172 173 5.071115 CCTTAGAAAAATGAACACCCCCAAA 59.929 40.000 0.00 0.00 0.00 3.28
173 174 6.408662 CCTTAGAAAAATGAACACCCCCAAAA 60.409 38.462 0.00 0.00 0.00 2.44
174 175 5.443230 AGAAAAATGAACACCCCCAAAAA 57.557 34.783 0.00 0.00 0.00 1.94
198 199 8.716646 AAAATTTTTAACAAGTCCCACTCAAG 57.283 30.769 0.00 0.00 0.00 3.02
200 201 8.528044 AATTTTTAACAAGTCCCACTCAAGTA 57.472 30.769 0.00 0.00 0.00 2.24
201 202 7.562454 TTTTTAACAAGTCCCACTCAAGTAG 57.438 36.000 0.00 0.00 0.00 2.57
202 203 6.488769 TTTAACAAGTCCCACTCAAGTAGA 57.511 37.500 0.00 0.00 0.00 2.59
203 204 6.488769 TTAACAAGTCCCACTCAAGTAGAA 57.511 37.500 0.00 0.00 0.00 2.10
204 205 4.608948 ACAAGTCCCACTCAAGTAGAAG 57.391 45.455 0.00 0.00 0.00 2.85
205 206 3.244249 ACAAGTCCCACTCAAGTAGAAGC 60.244 47.826 0.00 0.00 0.00 3.86
207 208 0.895530 TCCCACTCAAGTAGAAGCCG 59.104 55.000 0.00 0.00 0.00 5.52
208 209 0.608640 CCCACTCAAGTAGAAGCCGT 59.391 55.000 0.00 0.00 0.00 5.68
209 210 1.673033 CCCACTCAAGTAGAAGCCGTG 60.673 57.143 0.00 0.00 0.00 4.94
210 211 1.272490 CCACTCAAGTAGAAGCCGTGA 59.728 52.381 0.00 0.00 0.00 4.35
212 213 3.390135 CACTCAAGTAGAAGCCGTGAAA 58.610 45.455 0.00 0.00 0.00 2.69
214 215 4.452455 CACTCAAGTAGAAGCCGTGAAATT 59.548 41.667 0.00 0.00 0.00 1.82
215 216 5.049405 CACTCAAGTAGAAGCCGTGAAATTT 60.049 40.000 0.00 0.00 0.00 1.82
216 217 5.049405 ACTCAAGTAGAAGCCGTGAAATTTG 60.049 40.000 0.00 0.00 0.00 2.32
217 218 4.819630 TCAAGTAGAAGCCGTGAAATTTGT 59.180 37.500 0.00 0.00 0.00 2.83
218 219 5.992829 TCAAGTAGAAGCCGTGAAATTTGTA 59.007 36.000 0.00 0.00 0.00 2.41
219 220 6.147164 TCAAGTAGAAGCCGTGAAATTTGTAG 59.853 38.462 0.00 0.00 0.00 2.74
220 221 5.790593 AGTAGAAGCCGTGAAATTTGTAGA 58.209 37.500 0.00 0.00 0.00 2.59
221 222 6.228258 AGTAGAAGCCGTGAAATTTGTAGAA 58.772 36.000 0.00 0.00 0.00 2.10
222 223 6.708949 AGTAGAAGCCGTGAAATTTGTAGAAA 59.291 34.615 0.00 0.00 0.00 2.52
223 224 6.385649 AGAAGCCGTGAAATTTGTAGAAAA 57.614 33.333 0.00 0.00 0.00 2.29
224 225 6.801575 AGAAGCCGTGAAATTTGTAGAAAAA 58.198 32.000 0.00 0.00 0.00 1.94
244 245 3.923017 AAGTAAGATGGTGCAACAAGC 57.077 42.857 9.38 3.80 45.96 4.01
245 246 3.146104 AGTAAGATGGTGCAACAAGCT 57.854 42.857 9.38 6.60 38.89 3.74
246 247 3.077359 AGTAAGATGGTGCAACAAGCTC 58.923 45.455 9.38 1.08 33.62 4.09
247 248 2.283145 AAGATGGTGCAACAAGCTCT 57.717 45.000 9.38 4.11 33.62 4.09
248 249 1.818642 AGATGGTGCAACAAGCTCTC 58.181 50.000 9.38 0.16 21.16 3.20
249 250 0.445436 GATGGTGCAACAAGCTCTCG 59.555 55.000 9.38 0.00 45.94 4.04
251 252 1.159713 TGGTGCAACAAGCTCTCGTG 61.160 55.000 0.00 0.00 45.94 4.35
252 253 1.571460 GTGCAACAAGCTCTCGTGG 59.429 57.895 0.00 0.00 45.94 4.94
253 254 1.597854 TGCAACAAGCTCTCGTGGG 60.598 57.895 0.00 0.00 45.94 4.61
254 255 1.598130 GCAACAAGCTCTCGTGGGT 60.598 57.895 0.00 0.00 41.15 4.51
255 256 1.166531 GCAACAAGCTCTCGTGGGTT 61.167 55.000 0.00 0.00 41.15 4.11
256 257 1.876416 GCAACAAGCTCTCGTGGGTTA 60.876 52.381 0.00 0.00 41.15 2.85
257 258 2.069273 CAACAAGCTCTCGTGGGTTAG 58.931 52.381 0.00 0.00 0.00 2.34
258 259 0.037232 ACAAGCTCTCGTGGGTTAGC 60.037 55.000 0.00 0.00 35.16 3.09
259 260 0.037326 CAAGCTCTCGTGGGTTAGCA 60.037 55.000 0.00 0.00 37.44 3.49
260 261 0.905357 AAGCTCTCGTGGGTTAGCAT 59.095 50.000 0.00 0.00 37.44 3.79
261 262 0.461961 AGCTCTCGTGGGTTAGCATC 59.538 55.000 0.00 0.00 37.44 3.91
262 263 0.175760 GCTCTCGTGGGTTAGCATCA 59.824 55.000 0.00 0.00 35.05 3.07
263 264 1.405526 GCTCTCGTGGGTTAGCATCAA 60.406 52.381 0.00 0.00 35.05 2.57
264 265 2.935238 GCTCTCGTGGGTTAGCATCAAA 60.935 50.000 0.00 0.00 35.05 2.69
265 266 3.535561 CTCTCGTGGGTTAGCATCAAAT 58.464 45.455 0.00 0.00 0.00 2.32
266 267 3.270027 TCTCGTGGGTTAGCATCAAATG 58.730 45.455 0.00 0.00 0.00 2.32
267 268 2.355756 CTCGTGGGTTAGCATCAAATGG 59.644 50.000 0.00 0.00 0.00 3.16
269 270 2.733956 GTGGGTTAGCATCAAATGGGA 58.266 47.619 0.00 0.00 0.00 4.37
270 271 2.689983 GTGGGTTAGCATCAAATGGGAG 59.310 50.000 0.00 0.00 0.00 4.30
271 272 2.310538 GGGTTAGCATCAAATGGGAGG 58.689 52.381 0.00 0.00 0.00 4.30
272 273 2.310538 GGTTAGCATCAAATGGGAGGG 58.689 52.381 0.00 0.00 0.00 4.30
273 274 2.310538 GTTAGCATCAAATGGGAGGGG 58.689 52.381 0.00 0.00 0.00 4.79
275 276 1.238615 AGCATCAAATGGGAGGGGAT 58.761 50.000 0.00 0.00 0.00 3.85
276 277 1.577242 AGCATCAAATGGGAGGGGATT 59.423 47.619 0.00 0.00 0.00 3.01
277 278 2.791179 AGCATCAAATGGGAGGGGATTA 59.209 45.455 0.00 0.00 0.00 1.75
279 280 3.181429 GCATCAAATGGGAGGGGATTAGA 60.181 47.826 0.00 0.00 0.00 2.10
280 281 4.509843 GCATCAAATGGGAGGGGATTAGAT 60.510 45.833 0.00 0.00 0.00 1.98
283 284 2.138535 ATGGGAGGGGATTAGATGCA 57.861 50.000 0.00 0.00 0.00 3.96
284 285 1.905839 TGGGAGGGGATTAGATGCAA 58.094 50.000 0.00 0.00 0.00 4.08
285 286 2.213310 TGGGAGGGGATTAGATGCAAA 58.787 47.619 0.00 0.00 0.00 3.68
286 287 2.791179 TGGGAGGGGATTAGATGCAAAT 59.209 45.455 0.00 0.00 0.00 2.32
288 289 3.437052 GGGAGGGGATTAGATGCAAATGT 60.437 47.826 0.00 0.00 0.00 2.71
289 290 4.202567 GGGAGGGGATTAGATGCAAATGTA 60.203 45.833 0.00 0.00 0.00 2.29
290 291 5.385198 GGAGGGGATTAGATGCAAATGTAA 58.615 41.667 0.00 0.00 0.00 2.41
293 294 5.103515 AGGGGATTAGATGCAAATGTAAGGT 60.104 40.000 0.00 0.00 0.00 3.50
294 295 5.598417 GGGGATTAGATGCAAATGTAAGGTT 59.402 40.000 0.00 0.00 0.00 3.50
295 296 6.461509 GGGGATTAGATGCAAATGTAAGGTTG 60.462 42.308 0.00 0.00 0.00 3.77
296 297 6.461509 GGGATTAGATGCAAATGTAAGGTTGG 60.462 42.308 0.00 0.00 0.00 3.77
297 298 6.096846 GGATTAGATGCAAATGTAAGGTTGGT 59.903 38.462 0.00 0.00 0.00 3.67
298 299 6.509418 TTAGATGCAAATGTAAGGTTGGTC 57.491 37.500 0.00 0.00 0.00 4.02
299 300 4.666512 AGATGCAAATGTAAGGTTGGTCT 58.333 39.130 0.00 0.00 0.00 3.85
300 301 5.815581 AGATGCAAATGTAAGGTTGGTCTA 58.184 37.500 0.00 0.00 0.00 2.59
302 303 4.980573 TGCAAATGTAAGGTTGGTCTAGT 58.019 39.130 0.00 0.00 0.00 2.57
304 305 4.156008 GCAAATGTAAGGTTGGTCTAGTGG 59.844 45.833 0.00 0.00 0.00 4.00
305 306 3.629142 ATGTAAGGTTGGTCTAGTGGC 57.371 47.619 0.00 0.00 0.00 5.01
306 307 1.626825 TGTAAGGTTGGTCTAGTGGCC 59.373 52.381 0.00 0.00 0.00 5.36
307 308 1.065636 GTAAGGTTGGTCTAGTGGCCC 60.066 57.143 0.00 0.00 0.00 5.80
308 309 0.770557 AAGGTTGGTCTAGTGGCCCA 60.771 55.000 0.00 0.00 0.00 5.36
309 310 1.002502 GGTTGGTCTAGTGGCCCAC 60.003 63.158 5.50 5.50 34.10 4.61
310 311 1.758592 GTTGGTCTAGTGGCCCACA 59.241 57.895 17.80 1.04 36.74 4.17
311 312 0.109723 GTTGGTCTAGTGGCCCACAA 59.890 55.000 17.80 0.00 36.74 3.33
312 313 0.847373 TTGGTCTAGTGGCCCACAAA 59.153 50.000 17.80 2.43 36.74 2.83
315 316 1.818674 GGTCTAGTGGCCCACAAAATG 59.181 52.381 17.80 1.10 36.74 2.32
316 317 2.514803 GTCTAGTGGCCCACAAAATGT 58.485 47.619 17.80 0.00 36.74 2.71
317 318 3.560453 GGTCTAGTGGCCCACAAAATGTA 60.560 47.826 17.80 0.00 36.74 2.29
319 320 1.627864 AGTGGCCCACAAAATGTACC 58.372 50.000 17.80 0.00 36.74 3.34
320 321 0.606096 GTGGCCCACAAAATGTACCC 59.394 55.000 9.55 0.00 34.08 3.69
321 322 0.188587 TGGCCCACAAAATGTACCCA 59.811 50.000 0.00 0.00 0.00 4.51
322 323 1.343069 GGCCCACAAAATGTACCCAA 58.657 50.000 0.00 0.00 0.00 4.12
323 324 1.694696 GGCCCACAAAATGTACCCAAA 59.305 47.619 0.00 0.00 0.00 3.28
325 326 3.244735 GGCCCACAAAATGTACCCAAAAT 60.245 43.478 0.00 0.00 0.00 1.82
326 327 3.750652 GCCCACAAAATGTACCCAAAATG 59.249 43.478 0.00 0.00 0.00 2.32
328 329 5.237048 CCCACAAAATGTACCCAAAATGAG 58.763 41.667 0.00 0.00 0.00 2.90
329 330 5.011533 CCCACAAAATGTACCCAAAATGAGA 59.988 40.000 0.00 0.00 0.00 3.27
330 331 6.158598 CCACAAAATGTACCCAAAATGAGAG 58.841 40.000 0.00 0.00 0.00 3.20
331 332 6.158598 CACAAAATGTACCCAAAATGAGAGG 58.841 40.000 0.00 0.00 0.00 3.69
332 333 5.838521 ACAAAATGTACCCAAAATGAGAGGT 59.161 36.000 0.00 0.00 36.36 3.85
333 334 6.015434 ACAAAATGTACCCAAAATGAGAGGTC 60.015 38.462 0.00 0.00 33.70 3.85
334 335 5.520748 AATGTACCCAAAATGAGAGGTCT 57.479 39.130 0.00 0.00 33.70 3.85
335 336 6.636454 AATGTACCCAAAATGAGAGGTCTA 57.364 37.500 0.00 0.00 33.70 2.59
336 337 5.416271 TGTACCCAAAATGAGAGGTCTAC 57.584 43.478 0.00 0.00 33.70 2.59
338 339 3.170717 ACCCAAAATGAGAGGTCTACGA 58.829 45.455 0.00 0.00 0.00 3.43
339 340 3.056035 ACCCAAAATGAGAGGTCTACGAC 60.056 47.826 0.00 0.00 0.00 4.34
364 365 3.698539 TGGCAACACTCAAAATCAACAGA 59.301 39.130 0.00 0.00 46.17 3.41
365 366 4.159321 TGGCAACACTCAAAATCAACAGAA 59.841 37.500 0.00 0.00 46.17 3.02
366 367 4.504097 GGCAACACTCAAAATCAACAGAAC 59.496 41.667 0.00 0.00 0.00 3.01
368 369 4.552166 ACACTCAAAATCAACAGAACCG 57.448 40.909 0.00 0.00 0.00 4.44
370 371 4.035208 ACACTCAAAATCAACAGAACCGTC 59.965 41.667 0.00 0.00 0.00 4.79
371 372 4.035091 CACTCAAAATCAACAGAACCGTCA 59.965 41.667 0.00 0.00 0.00 4.35
372 373 4.638421 ACTCAAAATCAACAGAACCGTCAA 59.362 37.500 0.00 0.00 0.00 3.18
373 374 4.915704 TCAAAATCAACAGAACCGTCAAC 58.084 39.130 0.00 0.00 0.00 3.18
374 375 4.396478 TCAAAATCAACAGAACCGTCAACA 59.604 37.500 0.00 0.00 0.00 3.33
375 376 4.974368 AAATCAACAGAACCGTCAACAA 57.026 36.364 0.00 0.00 0.00 2.83
377 378 2.701107 TCAACAGAACCGTCAACAACA 58.299 42.857 0.00 0.00 0.00 3.33
378 379 3.075148 TCAACAGAACCGTCAACAACAA 58.925 40.909 0.00 0.00 0.00 2.83
379 380 3.120130 TCAACAGAACCGTCAACAACAAC 60.120 43.478 0.00 0.00 0.00 3.32
380 381 2.706890 ACAGAACCGTCAACAACAACT 58.293 42.857 0.00 0.00 0.00 3.16
381 382 2.418628 ACAGAACCGTCAACAACAACTG 59.581 45.455 0.00 0.00 0.00 3.16
382 383 1.400494 AGAACCGTCAACAACAACTGC 59.600 47.619 0.00 0.00 0.00 4.40
383 384 1.400494 GAACCGTCAACAACAACTGCT 59.600 47.619 0.00 0.00 0.00 4.24
384 385 0.732571 ACCGTCAACAACAACTGCTG 59.267 50.000 0.00 0.00 0.00 4.41
385 386 1.013596 CCGTCAACAACAACTGCTGA 58.986 50.000 0.00 0.00 0.00 4.26
386 387 1.400142 CCGTCAACAACAACTGCTGAA 59.600 47.619 0.00 0.00 31.99 3.02
387 388 2.159448 CCGTCAACAACAACTGCTGAAA 60.159 45.455 0.00 0.00 31.99 2.69
388 389 3.489059 CCGTCAACAACAACTGCTGAAAT 60.489 43.478 0.00 0.00 31.99 2.17
389 390 4.260990 CCGTCAACAACAACTGCTGAAATA 60.261 41.667 0.00 0.00 31.99 1.40
390 391 4.905866 CGTCAACAACAACTGCTGAAATAG 59.094 41.667 0.00 0.00 31.99 1.73
391 392 5.215160 GTCAACAACAACTGCTGAAATAGG 58.785 41.667 0.00 0.00 31.99 2.57
393 394 3.157087 ACAACAACTGCTGAAATAGGGG 58.843 45.455 0.00 0.00 0.00 4.79
394 395 3.181434 ACAACAACTGCTGAAATAGGGGA 60.181 43.478 0.00 0.00 0.00 4.81
395 396 3.806949 ACAACTGCTGAAATAGGGGAA 57.193 42.857 0.00 0.00 0.00 3.97
396 397 3.690460 ACAACTGCTGAAATAGGGGAAG 58.310 45.455 0.00 0.00 0.00 3.46
399 400 2.507471 ACTGCTGAAATAGGGGAAGGAG 59.493 50.000 0.00 0.00 33.08 3.69
400 401 2.774234 CTGCTGAAATAGGGGAAGGAGA 59.226 50.000 0.00 0.00 0.00 3.71
401 402 2.774234 TGCTGAAATAGGGGAAGGAGAG 59.226 50.000 0.00 0.00 0.00 3.20
402 403 2.486370 GCTGAAATAGGGGAAGGAGAGC 60.486 54.545 0.00 0.00 0.00 4.09
403 404 3.044894 CTGAAATAGGGGAAGGAGAGCT 58.955 50.000 0.00 0.00 0.00 4.09
404 405 4.227197 CTGAAATAGGGGAAGGAGAGCTA 58.773 47.826 0.00 0.00 0.00 3.32
405 406 4.832492 TGAAATAGGGGAAGGAGAGCTAT 58.168 43.478 0.00 0.00 0.00 2.97
407 408 6.575411 TGAAATAGGGGAAGGAGAGCTATAT 58.425 40.000 0.00 0.00 0.00 0.86
408 409 7.719424 TGAAATAGGGGAAGGAGAGCTATATA 58.281 38.462 0.00 0.00 0.00 0.86
410 411 6.936482 ATAGGGGAAGGAGAGCTATATAGT 57.064 41.667 11.38 0.00 0.00 2.12
411 412 4.941713 AGGGGAAGGAGAGCTATATAGTG 58.058 47.826 11.38 0.00 0.00 2.74
412 413 4.608473 AGGGGAAGGAGAGCTATATAGTGA 59.392 45.833 11.38 0.00 0.00 3.41
414 415 5.326069 GGGAAGGAGAGCTATATAGTGACA 58.674 45.833 11.38 0.00 0.00 3.58
415 416 5.184287 GGGAAGGAGAGCTATATAGTGACAC 59.816 48.000 11.38 0.00 0.00 3.67
416 417 5.184287 GGAAGGAGAGCTATATAGTGACACC 59.816 48.000 11.38 10.21 0.00 4.16
418 419 5.706447 AGGAGAGCTATATAGTGACACCAA 58.294 41.667 11.38 0.00 0.00 3.67
419 420 6.136857 AGGAGAGCTATATAGTGACACCAAA 58.863 40.000 11.38 0.00 0.00 3.28
420 421 6.611642 AGGAGAGCTATATAGTGACACCAAAA 59.388 38.462 11.38 0.00 0.00 2.44
421 422 7.125811 AGGAGAGCTATATAGTGACACCAAAAA 59.874 37.037 11.38 0.00 0.00 1.94
443 444 3.716195 CCAGGTGGCGACCATCCA 61.716 66.667 20.91 0.00 45.98 3.41
444 445 2.350895 CAGGTGGCGACCATCCAA 59.649 61.111 20.91 0.00 45.98 3.53
445 446 2.040544 CAGGTGGCGACCATCCAAC 61.041 63.158 20.91 0.00 45.98 3.77
446 447 2.750237 GGTGGCGACCATCCAACC 60.750 66.667 13.75 0.00 42.59 3.77
449 450 2.818274 GGCGACCATCCAACCGTC 60.818 66.667 0.00 0.00 0.00 4.79
452 453 2.975536 GACCATCCAACCGTCGGA 59.024 61.111 20.51 0.00 36.84 4.55
453 454 1.520666 GACCATCCAACCGTCGGAT 59.479 57.895 20.51 2.18 44.35 4.18
457 458 1.823295 ATCCAACCGTCGGATGAGG 59.177 57.895 21.97 14.69 41.84 3.86
458 459 0.686441 ATCCAACCGTCGGATGAGGA 60.686 55.000 21.97 18.89 41.84 3.71
459 460 1.153628 CCAACCGTCGGATGAGGAC 60.154 63.158 21.97 0.00 31.63 3.85
460 461 1.589630 CAACCGTCGGATGAGGACA 59.410 57.895 20.51 0.00 34.04 4.02
461 462 0.175760 CAACCGTCGGATGAGGACAT 59.824 55.000 20.51 0.00 39.67 3.06
470 471 2.353357 GATGAGGACATCCAATGGCA 57.647 50.000 0.00 0.00 44.89 4.92
472 473 0.697658 TGAGGACATCCAATGGCACA 59.302 50.000 0.00 0.00 41.20 4.57
473 474 1.098050 GAGGACATCCAATGGCACAC 58.902 55.000 0.00 0.00 41.20 3.82
477 478 3.140953 GGACATCCAATGGCACACTCAA 61.141 50.000 0.00 0.00 41.20 3.02
478 479 4.979258 GGACATCCAATGGCACACTCAAG 61.979 52.174 0.00 0.00 41.20 3.02
488 489 0.249868 CACACTCAAGCCTGTTCGGA 60.250 55.000 0.00 0.00 33.16 4.55
489 490 0.687354 ACACTCAAGCCTGTTCGGAT 59.313 50.000 0.00 0.00 33.16 4.18
490 491 1.338200 ACACTCAAGCCTGTTCGGATC 60.338 52.381 0.00 0.00 33.16 3.36
491 492 0.250513 ACTCAAGCCTGTTCGGATCC 59.749 55.000 0.00 0.00 33.16 3.36
492 493 0.250234 CTCAAGCCTGTTCGGATCCA 59.750 55.000 13.41 0.00 33.16 3.41
493 494 0.036388 TCAAGCCTGTTCGGATCCAC 60.036 55.000 13.41 3.70 33.16 4.02
494 495 0.036010 CAAGCCTGTTCGGATCCACT 60.036 55.000 13.41 0.00 33.16 4.00
495 496 0.250513 AAGCCTGTTCGGATCCACTC 59.749 55.000 13.41 1.28 33.16 3.51
496 497 1.153349 GCCTGTTCGGATCCACTCC 60.153 63.158 13.41 0.00 41.07 3.85
503 504 2.501610 GGATCCACTCCGCTCCAC 59.498 66.667 6.95 0.00 33.29 4.02
504 505 2.359169 GGATCCACTCCGCTCCACA 61.359 63.158 6.95 0.00 33.29 4.17
506 507 0.249657 GATCCACTCCGCTCCACATC 60.250 60.000 0.00 0.00 0.00 3.06
508 509 2.202797 CACTCCGCTCCACATCCG 60.203 66.667 0.00 0.00 0.00 4.18
509 510 4.148825 ACTCCGCTCCACATCCGC 62.149 66.667 0.00 0.00 0.00 5.54
512 513 3.499737 CCGCTCCACATCCGCAAC 61.500 66.667 0.00 0.00 0.00 4.17
513 514 2.434884 CGCTCCACATCCGCAACT 60.435 61.111 0.00 0.00 0.00 3.16
514 515 2.456119 CGCTCCACATCCGCAACTC 61.456 63.158 0.00 0.00 0.00 3.01
515 516 2.109126 GCTCCACATCCGCAACTCC 61.109 63.158 0.00 0.00 0.00 3.85
516 517 1.450312 CTCCACATCCGCAACTCCC 60.450 63.158 0.00 0.00 0.00 4.30
517 518 2.819595 CCACATCCGCAACTCCCG 60.820 66.667 0.00 0.00 0.00 5.14
518 519 2.819595 CACATCCGCAACTCCCGG 60.820 66.667 0.00 0.00 46.88 5.73
535 536 4.200283 GAGCGGAGGGAGCGACAG 62.200 72.222 0.00 0.00 40.04 3.51
553 554 2.276244 CGCAATCGCACGAAGCTG 60.276 61.111 15.55 7.30 42.61 4.24
555 556 3.031964 GCAATCGCACGAAGCTGCT 62.032 57.895 14.24 0.00 42.61 4.24
557 558 1.374631 AATCGCACGAAGCTGCTCA 60.375 52.632 1.00 0.00 42.61 4.26
561 562 2.386660 GCACGAAGCTGCTCAGACC 61.387 63.158 1.00 0.00 41.15 3.85
562 563 1.739562 CACGAAGCTGCTCAGACCC 60.740 63.158 1.00 0.00 0.00 4.46
564 565 1.004560 CGAAGCTGCTCAGACCCAA 60.005 57.895 1.00 0.00 0.00 4.12
566 567 0.036022 GAAGCTGCTCAGACCCAACT 59.964 55.000 1.00 0.00 0.00 3.16
567 568 0.036022 AAGCTGCTCAGACCCAACTC 59.964 55.000 1.00 0.00 0.00 3.01
568 569 1.376553 GCTGCTCAGACCCAACTCC 60.377 63.158 0.29 0.00 0.00 3.85
569 570 1.835927 GCTGCTCAGACCCAACTCCT 61.836 60.000 0.29 0.00 0.00 3.69
570 571 0.248843 CTGCTCAGACCCAACTCCTC 59.751 60.000 0.00 0.00 0.00 3.71
571 572 1.216710 GCTCAGACCCAACTCCTCG 59.783 63.158 0.00 0.00 0.00 4.63
572 573 1.216710 CTCAGACCCAACTCCTCGC 59.783 63.158 0.00 0.00 0.00 5.03
573 574 1.533033 TCAGACCCAACTCCTCGCA 60.533 57.895 0.00 0.00 0.00 5.10
574 575 1.374758 CAGACCCAACTCCTCGCAC 60.375 63.158 0.00 0.00 0.00 5.34
575 576 2.432628 GACCCAACTCCTCGCACG 60.433 66.667 0.00 0.00 0.00 5.34
576 577 3.934391 GACCCAACTCCTCGCACGG 62.934 68.421 0.00 0.00 0.00 4.94
577 578 3.691342 CCCAACTCCTCGCACGGA 61.691 66.667 0.00 0.00 0.00 4.69
588 589 2.556287 GCACGGAGCGGAGTTTTG 59.444 61.111 0.00 0.00 0.00 2.44
589 590 1.959226 GCACGGAGCGGAGTTTTGA 60.959 57.895 0.00 0.00 0.00 2.69
592 593 0.942252 ACGGAGCGGAGTTTTGAAAC 59.058 50.000 0.00 0.00 39.17 2.78
593 594 0.110823 CGGAGCGGAGTTTTGAAACG 60.111 55.000 1.32 0.00 43.51 3.60
594 595 0.237498 GGAGCGGAGTTTTGAAACGG 59.763 55.000 1.32 0.00 43.51 4.44
595 596 0.237498 GAGCGGAGTTTTGAAACGGG 59.763 55.000 1.32 0.00 43.51 5.28
596 597 0.179040 AGCGGAGTTTTGAAACGGGA 60.179 50.000 1.32 0.00 43.51 5.14
597 598 0.237498 GCGGAGTTTTGAAACGGGAG 59.763 55.000 1.32 0.00 43.51 4.30
598 599 1.873698 CGGAGTTTTGAAACGGGAGA 58.126 50.000 1.32 0.00 43.51 3.71
599 600 1.798813 CGGAGTTTTGAAACGGGAGAG 59.201 52.381 1.32 0.00 43.51 3.20
600 601 2.152016 GGAGTTTTGAAACGGGAGAGG 58.848 52.381 1.32 0.00 43.51 3.69
601 602 2.486727 GGAGTTTTGAAACGGGAGAGGT 60.487 50.000 1.32 0.00 43.51 3.85
603 604 4.565028 GGAGTTTTGAAACGGGAGAGGTAT 60.565 45.833 1.32 0.00 43.51 2.73
604 605 4.576879 AGTTTTGAAACGGGAGAGGTATC 58.423 43.478 1.32 0.00 43.51 2.24
605 606 2.953466 TTGAAACGGGAGAGGTATCG 57.047 50.000 0.00 0.00 0.00 2.92
606 607 2.133281 TGAAACGGGAGAGGTATCGA 57.867 50.000 0.00 0.00 0.00 3.59
608 609 2.165030 TGAAACGGGAGAGGTATCGAAC 59.835 50.000 0.00 0.00 0.00 3.95
609 610 1.843368 AACGGGAGAGGTATCGAACA 58.157 50.000 0.00 0.00 0.00 3.18
610 611 2.068834 ACGGGAGAGGTATCGAACAT 57.931 50.000 0.00 0.00 0.00 2.71
611 612 1.681793 ACGGGAGAGGTATCGAACATG 59.318 52.381 0.00 0.00 0.00 3.21
612 613 1.603172 CGGGAGAGGTATCGAACATGC 60.603 57.143 0.00 0.00 0.00 4.06
615 616 3.495100 GGGAGAGGTATCGAACATGCATT 60.495 47.826 0.00 0.00 0.00 3.56
616 617 3.743396 GGAGAGGTATCGAACATGCATTC 59.257 47.826 0.00 0.00 0.00 2.67
619 620 4.100035 AGAGGTATCGAACATGCATTCAGA 59.900 41.667 0.00 0.00 0.00 3.27
620 621 4.965814 AGGTATCGAACATGCATTCAGAT 58.034 39.130 0.00 2.77 0.00 2.90
621 622 5.371526 AGGTATCGAACATGCATTCAGATT 58.628 37.500 0.00 0.00 0.00 2.40
622 623 5.468072 AGGTATCGAACATGCATTCAGATTC 59.532 40.000 0.00 0.00 0.00 2.52
623 624 5.468072 GGTATCGAACATGCATTCAGATTCT 59.532 40.000 0.00 0.00 0.00 2.40
625 626 5.885230 TCGAACATGCATTCAGATTCTTT 57.115 34.783 0.00 0.00 0.00 2.52
626 627 5.633927 TCGAACATGCATTCAGATTCTTTG 58.366 37.500 0.00 0.00 0.00 2.77
627 628 5.181811 TCGAACATGCATTCAGATTCTTTGT 59.818 36.000 0.00 0.00 0.00 2.83
628 629 5.285370 CGAACATGCATTCAGATTCTTTGTG 59.715 40.000 0.00 0.00 0.00 3.33
629 630 5.068234 ACATGCATTCAGATTCTTTGTGG 57.932 39.130 0.00 0.00 0.00 4.17
630 631 4.768448 ACATGCATTCAGATTCTTTGTGGA 59.232 37.500 0.00 0.00 0.00 4.02
639 640 1.311859 TTCTTTGTGGACTGCTGCTG 58.688 50.000 4.89 4.89 0.00 4.41
655 656 2.424474 CTGAGCTAGCTCGACCCAT 58.576 57.895 33.55 4.31 45.48 4.00
664 665 0.107654 GCTCGACCCATGCCTAGTTT 60.108 55.000 0.00 0.00 0.00 2.66
666 667 2.803492 GCTCGACCCATGCCTAGTTTAG 60.803 54.545 0.00 0.00 0.00 1.85
688 689 1.918609 GCTTTAGCGTCGTCGAATTCT 59.081 47.619 6.17 0.00 39.71 2.40
689 690 2.344741 GCTTTAGCGTCGTCGAATTCTT 59.655 45.455 6.17 0.00 39.71 2.52
715 716 7.906199 TTTTATCTTCCCCACAGAAAGAAAA 57.094 32.000 0.00 0.00 0.00 2.29
716 717 7.906199 TTTATCTTCCCCACAGAAAGAAAAA 57.094 32.000 0.00 0.00 0.00 1.94
717 718 8.491045 TTTATCTTCCCCACAGAAAGAAAAAT 57.509 30.769 0.00 0.00 0.00 1.82
718 719 9.594936 TTTATCTTCCCCACAGAAAGAAAAATA 57.405 29.630 0.00 0.00 0.00 1.40
719 720 6.894339 TCTTCCCCACAGAAAGAAAAATAC 57.106 37.500 0.00 0.00 0.00 1.89
721 722 7.066781 TCTTCCCCACAGAAAGAAAAATACTT 58.933 34.615 0.00 0.00 0.00 2.24
726 727 7.865889 CCCCACAGAAAGAAAAATACTTGTAAC 59.134 37.037 0.00 0.00 0.00 2.50
742 743 7.203255 ACTTGTAACTCTTTTTATGTCAGGC 57.797 36.000 0.00 0.00 0.00 4.85
743 744 6.770785 ACTTGTAACTCTTTTTATGTCAGGCA 59.229 34.615 0.00 0.00 0.00 4.75
787 788 4.160252 AGCACTTGACATTTCAAAGTTGGT 59.840 37.500 0.00 0.00 41.34 3.67
790 791 3.980646 TGACATTTCAAAGTTGGTCCG 57.019 42.857 0.00 0.00 0.00 4.79
801 802 7.605410 TCAAAGTTGGTCCGATAAATACTTC 57.395 36.000 0.00 0.00 0.00 3.01
886 887 5.554437 TCATGTAGTACAAGTTGACCCAA 57.446 39.130 10.54 0.00 0.00 4.12
924 926 0.117541 TACAAGTACTCCTGGGCCCA 59.882 55.000 26.67 26.67 0.00 5.36
927 929 1.005924 CAAGTACTCCTGGGCCCATTT 59.994 52.381 28.82 12.44 0.00 2.32
928 930 0.919710 AGTACTCCTGGGCCCATTTC 59.080 55.000 28.82 12.76 0.00 2.17
929 931 0.919710 GTACTCCTGGGCCCATTTCT 59.080 55.000 28.82 11.26 0.00 2.52
966 969 3.021263 CCGTCCCCTTCCCCCAAT 61.021 66.667 0.00 0.00 0.00 3.16
967 970 2.595655 CGTCCCCTTCCCCCAATC 59.404 66.667 0.00 0.00 0.00 2.67
1848 5886 4.655963 ACAAGCCTGATGACTATGTTGTT 58.344 39.130 0.00 0.00 0.00 2.83
1959 5997 3.181458 ACAAGAAGTACTTTCGCCCTTCA 60.181 43.478 10.02 0.00 40.86 3.02
1971 6009 1.484444 GCCCTTCAGAGGTGGACTGT 61.484 60.000 0.00 0.00 41.85 3.55
1986 6024 0.534412 ACTGTCTGCAGGGAGATTCG 59.466 55.000 15.13 0.00 46.62 3.34
2144 6182 2.036475 AGCAGCCATAGAGTTGGTATCG 59.964 50.000 0.00 0.00 39.11 2.92
2178 6216 4.541973 AAATGGAGCTTGGTTTGGATTC 57.458 40.909 0.00 0.00 0.00 2.52
2371 6410 5.539955 ACCATACCATTTTGAAGCAAACTCT 59.460 36.000 0.00 0.00 32.79 3.24
2377 6788 5.461078 CCATTTTGAAGCAAACTCTTCTGTG 59.539 40.000 5.30 0.47 42.15 3.66
2380 6791 5.643379 TTGAAGCAAACTCTTCTGTGTTT 57.357 34.783 5.30 0.00 42.15 2.83
2415 6828 3.764885 ACTTGTCTTTCTGTTGTGTGC 57.235 42.857 0.00 0.00 0.00 4.57
2481 6894 6.449635 TTTACATTACCATCTTGGCACATC 57.550 37.500 0.00 0.00 42.67 3.06
2482 6895 3.290710 ACATTACCATCTTGGCACATCC 58.709 45.455 0.00 0.00 42.67 3.51
2522 6935 7.596749 AATCAGTACAGTTCAAAATCGTAGG 57.403 36.000 0.00 0.00 0.00 3.18
2546 6959 8.850156 AGGTAATCTACATAATTGAAATGGTGC 58.150 33.333 0.00 0.00 0.00 5.01
2562 6985 9.571816 TGAAATGGTGCATATATTTCTCATACA 57.428 29.630 22.49 8.91 40.01 2.29
2572 6995 6.718454 ATATTTCTCATACATGAAGAGCGC 57.282 37.500 0.00 0.00 36.18 5.92
2573 6996 2.515926 TCTCATACATGAAGAGCGCC 57.484 50.000 2.29 0.00 36.18 6.53
2576 6999 1.202568 TCATACATGAAGAGCGCCAGG 60.203 52.381 2.29 0.00 33.08 4.45
2590 7013 1.754803 CGCCAGGTGAACTATAGTCCA 59.245 52.381 5.70 0.00 0.00 4.02
2592 7015 3.181465 CGCCAGGTGAACTATAGTCCAAT 60.181 47.826 5.70 0.00 0.00 3.16
2725 7149 1.336125 GCTTTGCAGGTATCAGGCATC 59.664 52.381 0.00 0.00 37.39 3.91
2752 7176 9.483489 TTGTCCTGAGTATAATAAGGTCACTAA 57.517 33.333 3.33 0.00 0.00 2.24
2841 7274 5.128499 ACAAGAGAGACCCTACATGATTCAG 59.872 44.000 0.00 0.00 0.00 3.02
3011 7444 0.901580 ATTGGCTTTGGGTGCTGAGG 60.902 55.000 0.00 0.00 0.00 3.86
3027 7460 4.037446 TGCTGAGGCAACGATTTTAAGTTT 59.963 37.500 0.00 0.00 46.36 2.66
3030 7463 6.345803 GCTGAGGCAACGATTTTAAGTTTTTC 60.346 38.462 0.00 0.00 46.39 2.29
3032 7465 4.979815 AGGCAACGATTTTAAGTTTTTCCG 59.020 37.500 0.00 0.00 46.39 4.30
3040 7473 5.838531 TTTTAAGTTTTTCCGCTTCAGGA 57.161 34.783 0.00 0.00 38.79 3.86
3044 7477 4.553330 AGTTTTTCCGCTTCAGGAGATA 57.447 40.909 0.00 0.00 41.98 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.723298 ACATTACAACTTGGGTGAAAATGA 57.277 33.333 15.97 0.00 0.00 2.57
3 4 9.372369 CTTTTAACATTACAACTTGGGTGAAAA 57.628 29.630 0.00 0.00 0.00 2.29
4 5 7.492994 GCTTTTAACATTACAACTTGGGTGAAA 59.507 33.333 0.00 0.00 0.00 2.69
5 6 6.981559 GCTTTTAACATTACAACTTGGGTGAA 59.018 34.615 0.00 0.00 0.00 3.18
6 7 6.096987 TGCTTTTAACATTACAACTTGGGTGA 59.903 34.615 0.00 0.00 0.00 4.02
8 9 6.322712 TCTGCTTTTAACATTACAACTTGGGT 59.677 34.615 0.00 0.00 0.00 4.51
30 31 8.680903 AGTCAATTTCCTAAAGTGCAATATCTG 58.319 33.333 0.00 0.00 36.49 2.90
31 32 8.814038 AGTCAATTTCCTAAAGTGCAATATCT 57.186 30.769 0.00 0.00 36.49 1.98
32 33 9.294030 CAAGTCAATTTCCTAAAGTGCAATATC 57.706 33.333 0.00 0.00 36.49 1.63
33 34 9.023962 TCAAGTCAATTTCCTAAAGTGCAATAT 57.976 29.630 0.00 0.00 36.49 1.28
34 35 8.402798 TCAAGTCAATTTCCTAAAGTGCAATA 57.597 30.769 0.00 0.00 36.49 1.90
35 36 7.288810 TCAAGTCAATTTCCTAAAGTGCAAT 57.711 32.000 0.00 0.00 36.49 3.56
37 38 6.707440 TTCAAGTCAATTTCCTAAAGTGCA 57.293 33.333 0.00 0.00 36.49 4.57
51 52 8.469200 CCTGGCATTTTTCTATATTCAAGTCAA 58.531 33.333 0.00 0.00 0.00 3.18
52 53 7.833682 TCCTGGCATTTTTCTATATTCAAGTCA 59.166 33.333 0.00 0.00 0.00 3.41
53 54 8.225603 TCCTGGCATTTTTCTATATTCAAGTC 57.774 34.615 0.00 0.00 0.00 3.01
54 55 8.636213 CATCCTGGCATTTTTCTATATTCAAGT 58.364 33.333 0.00 0.00 0.00 3.16
56 57 7.015487 CCCATCCTGGCATTTTTCTATATTCAA 59.985 37.037 0.00 0.00 35.79 2.69
59 60 6.623329 TCCCATCCTGGCATTTTTCTATATT 58.377 36.000 0.00 0.00 35.79 1.28
60 61 6.218195 TCCCATCCTGGCATTTTTCTATAT 57.782 37.500 0.00 0.00 35.79 0.86
61 62 5.661503 TCCCATCCTGGCATTTTTCTATA 57.338 39.130 0.00 0.00 35.79 1.31
62 63 4.541250 TCCCATCCTGGCATTTTTCTAT 57.459 40.909 0.00 0.00 35.79 1.98
63 64 4.329638 TTCCCATCCTGGCATTTTTCTA 57.670 40.909 0.00 0.00 35.79 2.10
64 65 2.925966 TCCCATCCTGGCATTTTTCT 57.074 45.000 0.00 0.00 35.79 2.52
65 66 3.432608 CCATTCCCATCCTGGCATTTTTC 60.433 47.826 0.00 0.00 35.79 2.29
66 67 2.506644 CCATTCCCATCCTGGCATTTTT 59.493 45.455 0.00 0.00 35.79 1.94
67 68 2.121129 CCATTCCCATCCTGGCATTTT 58.879 47.619 0.00 0.00 35.79 1.82
68 69 1.693404 CCCATTCCCATCCTGGCATTT 60.693 52.381 0.00 0.00 35.79 2.32
69 70 0.105349 CCCATTCCCATCCTGGCATT 60.105 55.000 0.00 0.00 35.79 3.56
70 71 1.545211 CCCATTCCCATCCTGGCAT 59.455 57.895 0.00 0.00 35.79 4.40
71 72 3.018019 CCCATTCCCATCCTGGCA 58.982 61.111 0.00 0.00 35.79 4.92
73 74 2.199535 GGCCCATTCCCATCCTGG 59.800 66.667 0.00 0.00 37.25 4.45
74 75 2.203394 CGGCCCATTCCCATCCTG 60.203 66.667 0.00 0.00 0.00 3.86
76 77 4.603535 CCCGGCCCATTCCCATCC 62.604 72.222 0.00 0.00 0.00 3.51
78 79 3.820843 GACCCGGCCCATTCCCAT 61.821 66.667 0.00 0.00 0.00 4.00
80 81 4.055227 TTGACCCGGCCCATTCCC 62.055 66.667 0.00 0.00 0.00 3.97
83 84 1.863155 ATGAGTTGACCCGGCCCATT 61.863 55.000 0.00 0.00 0.00 3.16
84 85 2.270874 GATGAGTTGACCCGGCCCAT 62.271 60.000 0.00 0.00 0.00 4.00
85 86 2.933287 ATGAGTTGACCCGGCCCA 60.933 61.111 0.00 0.00 0.00 5.36
86 87 2.124695 GATGAGTTGACCCGGCCC 60.125 66.667 0.00 0.00 0.00 5.80
87 88 2.511600 CGATGAGTTGACCCGGCC 60.512 66.667 0.00 0.00 0.00 6.13
88 89 2.311688 ATCCGATGAGTTGACCCGGC 62.312 60.000 0.00 0.00 39.96 6.13
89 90 0.249489 GATCCGATGAGTTGACCCGG 60.249 60.000 0.00 0.00 41.36 5.73
91 92 0.460311 ACGATCCGATGAGTTGACCC 59.540 55.000 0.00 0.00 0.00 4.46
93 94 1.927174 CCAACGATCCGATGAGTTGAC 59.073 52.381 19.94 0.00 44.64 3.18
94 95 1.739035 GCCAACGATCCGATGAGTTGA 60.739 52.381 19.94 0.00 44.64 3.18
95 96 0.652592 GCCAACGATCCGATGAGTTG 59.347 55.000 14.76 14.76 42.37 3.16
96 97 0.462047 GGCCAACGATCCGATGAGTT 60.462 55.000 0.00 0.00 31.46 3.01
97 98 1.144057 GGCCAACGATCCGATGAGT 59.856 57.895 0.00 0.00 31.46 3.41
98 99 0.598680 GAGGCCAACGATCCGATGAG 60.599 60.000 5.01 0.00 31.46 2.90
99 100 1.326951 TGAGGCCAACGATCCGATGA 61.327 55.000 5.01 0.00 31.46 2.92
100 101 0.461870 TTGAGGCCAACGATCCGATG 60.462 55.000 5.01 0.00 0.00 3.84
101 102 0.179073 CTTGAGGCCAACGATCCGAT 60.179 55.000 5.01 0.00 0.00 4.18
102 103 1.218047 CTTGAGGCCAACGATCCGA 59.782 57.895 5.01 0.00 0.00 4.55
103 104 1.815421 CCTTGAGGCCAACGATCCG 60.815 63.158 5.01 0.00 0.00 4.18
104 105 4.225497 CCTTGAGGCCAACGATCC 57.775 61.111 5.01 0.00 0.00 3.36
116 117 4.974438 ACCCGGACCTGGCCTTGA 62.974 66.667 0.73 0.00 0.00 3.02
117 118 4.410400 GACCCGGACCTGGCCTTG 62.410 72.222 0.73 0.00 0.00 3.61
131 132 0.765510 AGGATAGAAATGGCCCGACC 59.234 55.000 0.00 0.00 39.84 4.79
133 134 3.583228 TCTAAGGATAGAAATGGCCCGA 58.417 45.455 0.00 0.00 35.21 5.14
142 143 7.614192 GGGGTGTTCATTTTTCTAAGGATAGAA 59.386 37.037 0.00 0.00 44.48 2.10
145 146 6.192044 GGGGGTGTTCATTTTTCTAAGGATA 58.808 40.000 0.00 0.00 0.00 2.59
146 147 5.023452 GGGGGTGTTCATTTTTCTAAGGAT 58.977 41.667 0.00 0.00 0.00 3.24
147 148 4.140900 TGGGGGTGTTCATTTTTCTAAGGA 60.141 41.667 0.00 0.00 0.00 3.36
148 149 4.156477 TGGGGGTGTTCATTTTTCTAAGG 58.844 43.478 0.00 0.00 0.00 2.69
150 151 6.561519 TTTTGGGGGTGTTCATTTTTCTAA 57.438 33.333 0.00 0.00 0.00 2.10
151 152 6.561519 TTTTTGGGGGTGTTCATTTTTCTA 57.438 33.333 0.00 0.00 0.00 2.10
172 173 9.161629 CTTGAGTGGGACTTGTTAAAAATTTTT 57.838 29.630 19.44 19.44 0.00 1.94
173 174 8.318412 ACTTGAGTGGGACTTGTTAAAAATTTT 58.682 29.630 0.00 0.00 0.00 1.82
174 175 7.847096 ACTTGAGTGGGACTTGTTAAAAATTT 58.153 30.769 0.00 0.00 0.00 1.82
175 176 7.418337 ACTTGAGTGGGACTTGTTAAAAATT 57.582 32.000 0.00 0.00 0.00 1.82
176 177 7.996644 TCTACTTGAGTGGGACTTGTTAAAAAT 59.003 33.333 0.00 0.00 0.00 1.82
177 178 7.340256 TCTACTTGAGTGGGACTTGTTAAAAA 58.660 34.615 0.00 0.00 0.00 1.94
179 180 6.488769 TCTACTTGAGTGGGACTTGTTAAA 57.511 37.500 0.00 0.00 0.00 1.52
182 183 4.743955 GCTTCTACTTGAGTGGGACTTGTT 60.744 45.833 0.00 0.00 0.00 2.83
183 184 3.244249 GCTTCTACTTGAGTGGGACTTGT 60.244 47.826 0.00 0.00 0.00 3.16
185 186 2.303311 GGCTTCTACTTGAGTGGGACTT 59.697 50.000 0.00 0.00 0.00 3.01
186 187 1.903183 GGCTTCTACTTGAGTGGGACT 59.097 52.381 0.00 0.00 0.00 3.85
188 189 0.895530 CGGCTTCTACTTGAGTGGGA 59.104 55.000 0.00 0.00 0.00 4.37
189 190 0.608640 ACGGCTTCTACTTGAGTGGG 59.391 55.000 0.00 0.00 0.00 4.61
190 191 1.272490 TCACGGCTTCTACTTGAGTGG 59.728 52.381 0.00 0.00 0.00 4.00
192 193 3.746045 TTTCACGGCTTCTACTTGAGT 57.254 42.857 0.00 0.00 0.00 3.41
193 194 5.049405 ACAAATTTCACGGCTTCTACTTGAG 60.049 40.000 0.00 0.00 0.00 3.02
194 195 4.819630 ACAAATTTCACGGCTTCTACTTGA 59.180 37.500 0.00 0.00 0.00 3.02
195 196 5.108385 ACAAATTTCACGGCTTCTACTTG 57.892 39.130 0.00 0.00 0.00 3.16
196 197 6.228258 TCTACAAATTTCACGGCTTCTACTT 58.772 36.000 0.00 0.00 0.00 2.24
197 198 5.790593 TCTACAAATTTCACGGCTTCTACT 58.209 37.500 0.00 0.00 0.00 2.57
198 199 6.476243 TTCTACAAATTTCACGGCTTCTAC 57.524 37.500 0.00 0.00 0.00 2.59
200 201 6.385649 TTTTCTACAAATTTCACGGCTTCT 57.614 33.333 0.00 0.00 0.00 2.85
221 222 5.049828 GCTTGTTGCACCATCTTACTTTTT 58.950 37.500 0.00 0.00 42.31 1.94
222 223 4.342092 AGCTTGTTGCACCATCTTACTTTT 59.658 37.500 0.00 0.00 45.94 2.27
223 224 3.891366 AGCTTGTTGCACCATCTTACTTT 59.109 39.130 0.00 0.00 45.94 2.66
224 225 3.490348 AGCTTGTTGCACCATCTTACTT 58.510 40.909 0.00 0.00 45.94 2.24
225 226 3.077359 GAGCTTGTTGCACCATCTTACT 58.923 45.455 0.00 0.00 45.94 2.24
227 228 3.338249 GAGAGCTTGTTGCACCATCTTA 58.662 45.455 0.00 0.00 45.94 2.10
228 229 2.157738 GAGAGCTTGTTGCACCATCTT 58.842 47.619 0.00 0.00 45.94 2.40
232 233 1.146041 ACGAGAGCTTGTTGCACCA 59.854 52.632 0.00 0.00 45.94 4.17
233 234 1.571460 CACGAGAGCTTGTTGCACC 59.429 57.895 0.00 0.00 45.94 5.01
234 235 1.571460 CCACGAGAGCTTGTTGCAC 59.429 57.895 0.00 0.00 45.94 4.57
236 237 1.166531 AACCCACGAGAGCTTGTTGC 61.167 55.000 0.00 0.00 43.29 4.17
237 238 2.069273 CTAACCCACGAGAGCTTGTTG 58.931 52.381 0.00 0.00 0.00 3.33
238 239 1.608283 GCTAACCCACGAGAGCTTGTT 60.608 52.381 0.00 0.00 32.04 2.83
239 240 0.037232 GCTAACCCACGAGAGCTTGT 60.037 55.000 0.00 0.00 32.04 3.16
240 241 0.037326 TGCTAACCCACGAGAGCTTG 60.037 55.000 0.00 0.00 35.89 4.01
241 242 0.905357 ATGCTAACCCACGAGAGCTT 59.095 50.000 0.00 0.00 35.89 3.74
242 243 0.461961 GATGCTAACCCACGAGAGCT 59.538 55.000 0.00 0.00 35.89 4.09
243 244 0.175760 TGATGCTAACCCACGAGAGC 59.824 55.000 0.00 0.00 35.43 4.09
244 245 2.672961 TTGATGCTAACCCACGAGAG 57.327 50.000 0.00 0.00 0.00 3.20
245 246 3.270027 CATTTGATGCTAACCCACGAGA 58.730 45.455 0.00 0.00 0.00 4.04
246 247 2.355756 CCATTTGATGCTAACCCACGAG 59.644 50.000 0.00 0.00 0.00 4.18
247 248 2.364632 CCATTTGATGCTAACCCACGA 58.635 47.619 0.00 0.00 0.00 4.35
248 249 1.405105 CCCATTTGATGCTAACCCACG 59.595 52.381 0.00 0.00 0.00 4.94
249 250 2.689983 CTCCCATTTGATGCTAACCCAC 59.310 50.000 0.00 0.00 0.00 4.61
251 252 2.310538 CCTCCCATTTGATGCTAACCC 58.689 52.381 0.00 0.00 0.00 4.11
252 253 2.310538 CCCTCCCATTTGATGCTAACC 58.689 52.381 0.00 0.00 0.00 2.85
253 254 2.091885 TCCCCTCCCATTTGATGCTAAC 60.092 50.000 0.00 0.00 0.00 2.34
254 255 2.213310 TCCCCTCCCATTTGATGCTAA 58.787 47.619 0.00 0.00 0.00 3.09
255 256 1.905839 TCCCCTCCCATTTGATGCTA 58.094 50.000 0.00 0.00 0.00 3.49
256 257 1.238615 ATCCCCTCCCATTTGATGCT 58.761 50.000 0.00 0.00 0.00 3.79
257 258 2.092598 AATCCCCTCCCATTTGATGC 57.907 50.000 0.00 0.00 0.00 3.91
258 259 4.729552 TCTAATCCCCTCCCATTTGATG 57.270 45.455 0.00 0.00 0.00 3.07
259 260 4.509843 GCATCTAATCCCCTCCCATTTGAT 60.510 45.833 0.00 0.00 0.00 2.57
260 261 3.181429 GCATCTAATCCCCTCCCATTTGA 60.181 47.826 0.00 0.00 0.00 2.69
261 262 3.160269 GCATCTAATCCCCTCCCATTTG 58.840 50.000 0.00 0.00 0.00 2.32
262 263 2.791179 TGCATCTAATCCCCTCCCATTT 59.209 45.455 0.00 0.00 0.00 2.32
263 264 2.431997 TGCATCTAATCCCCTCCCATT 58.568 47.619 0.00 0.00 0.00 3.16
264 265 2.138535 TGCATCTAATCCCCTCCCAT 57.861 50.000 0.00 0.00 0.00 4.00
265 266 1.905839 TTGCATCTAATCCCCTCCCA 58.094 50.000 0.00 0.00 0.00 4.37
266 267 3.160269 CATTTGCATCTAATCCCCTCCC 58.840 50.000 0.00 0.00 0.00 4.30
267 268 3.837355 ACATTTGCATCTAATCCCCTCC 58.163 45.455 0.00 0.00 0.00 4.30
269 270 5.103515 ACCTTACATTTGCATCTAATCCCCT 60.104 40.000 0.00 0.00 0.00 4.79
270 271 5.140454 ACCTTACATTTGCATCTAATCCCC 58.860 41.667 0.00 0.00 0.00 4.81
271 272 6.461509 CCAACCTTACATTTGCATCTAATCCC 60.462 42.308 0.00 0.00 0.00 3.85
272 273 6.096846 ACCAACCTTACATTTGCATCTAATCC 59.903 38.462 0.00 0.00 0.00 3.01
273 274 7.067494 AGACCAACCTTACATTTGCATCTAATC 59.933 37.037 0.00 0.00 0.00 1.75
275 276 6.245408 AGACCAACCTTACATTTGCATCTAA 58.755 36.000 0.00 0.00 0.00 2.10
276 277 5.815581 AGACCAACCTTACATTTGCATCTA 58.184 37.500 0.00 0.00 0.00 1.98
277 278 4.666512 AGACCAACCTTACATTTGCATCT 58.333 39.130 0.00 0.00 0.00 2.90
279 280 5.415701 CACTAGACCAACCTTACATTTGCAT 59.584 40.000 0.00 0.00 0.00 3.96
280 281 4.759693 CACTAGACCAACCTTACATTTGCA 59.240 41.667 0.00 0.00 0.00 4.08
283 284 4.332828 GCCACTAGACCAACCTTACATTT 58.667 43.478 0.00 0.00 0.00 2.32
284 285 3.308188 GGCCACTAGACCAACCTTACATT 60.308 47.826 0.00 0.00 0.00 2.71
285 286 2.238898 GGCCACTAGACCAACCTTACAT 59.761 50.000 0.00 0.00 0.00 2.29
286 287 1.626825 GGCCACTAGACCAACCTTACA 59.373 52.381 0.00 0.00 0.00 2.41
288 289 1.282382 GGGCCACTAGACCAACCTTA 58.718 55.000 4.39 0.00 0.00 2.69
289 290 0.770557 TGGGCCACTAGACCAACCTT 60.771 55.000 0.00 0.00 0.00 3.50
290 291 1.151899 TGGGCCACTAGACCAACCT 60.152 57.895 0.00 0.00 0.00 3.50
293 294 0.847373 TTTGTGGGCCACTAGACCAA 59.153 50.000 34.69 18.45 35.77 3.67
294 295 0.847373 TTTTGTGGGCCACTAGACCA 59.153 50.000 34.69 13.21 35.11 4.02
295 296 1.818674 CATTTTGTGGGCCACTAGACC 59.181 52.381 34.69 10.47 35.11 3.85
296 297 2.514803 ACATTTTGTGGGCCACTAGAC 58.485 47.619 34.69 11.26 35.11 2.59
297 298 2.969821 ACATTTTGTGGGCCACTAGA 57.030 45.000 34.69 24.18 35.11 2.43
298 299 2.752903 GGTACATTTTGTGGGCCACTAG 59.247 50.000 34.69 21.50 35.11 2.57
299 300 2.555670 GGGTACATTTTGTGGGCCACTA 60.556 50.000 34.69 26.46 35.11 2.74
300 301 1.627864 GGTACATTTTGTGGGCCACT 58.372 50.000 34.69 17.75 35.11 4.00
302 303 0.188587 TGGGTACATTTTGTGGGCCA 59.811 50.000 0.00 0.00 0.00 5.36
304 305 3.477210 TTTTGGGTACATTTTGTGGGC 57.523 42.857 0.00 0.00 0.00 5.36
305 306 5.011533 TCTCATTTTGGGTACATTTTGTGGG 59.988 40.000 0.00 0.00 0.00 4.61
306 307 6.095432 TCTCATTTTGGGTACATTTTGTGG 57.905 37.500 0.00 0.00 0.00 4.17
307 308 6.158598 CCTCTCATTTTGGGTACATTTTGTG 58.841 40.000 0.00 0.00 0.00 3.33
308 309 5.838521 ACCTCTCATTTTGGGTACATTTTGT 59.161 36.000 0.00 0.00 0.00 2.83
309 310 6.209391 AGACCTCTCATTTTGGGTACATTTTG 59.791 38.462 0.00 0.00 31.60 2.44
310 311 6.314917 AGACCTCTCATTTTGGGTACATTTT 58.685 36.000 0.00 0.00 31.60 1.82
311 312 5.892348 AGACCTCTCATTTTGGGTACATTT 58.108 37.500 0.00 0.00 31.60 2.32
312 313 5.520748 AGACCTCTCATTTTGGGTACATT 57.479 39.130 0.00 0.00 31.60 2.71
315 316 4.159135 TCGTAGACCTCTCATTTTGGGTAC 59.841 45.833 0.00 0.00 31.60 3.34
316 317 4.346730 TCGTAGACCTCTCATTTTGGGTA 58.653 43.478 0.00 0.00 31.60 3.69
317 318 3.170717 TCGTAGACCTCTCATTTTGGGT 58.829 45.455 0.00 0.00 34.45 4.51
332 333 0.973632 AGTGTTGCCATGGTCGTAGA 59.026 50.000 14.67 0.00 0.00 2.59
333 334 1.337728 TGAGTGTTGCCATGGTCGTAG 60.338 52.381 14.67 0.00 0.00 3.51
334 335 0.682292 TGAGTGTTGCCATGGTCGTA 59.318 50.000 14.67 0.00 0.00 3.43
335 336 0.179032 TTGAGTGTTGCCATGGTCGT 60.179 50.000 14.67 0.00 0.00 4.34
336 337 0.950836 TTTGAGTGTTGCCATGGTCG 59.049 50.000 14.67 0.00 0.00 4.79
338 339 2.964464 TGATTTTGAGTGTTGCCATGGT 59.036 40.909 14.67 0.00 0.00 3.55
339 340 3.663995 TGATTTTGAGTGTTGCCATGG 57.336 42.857 7.63 7.63 0.00 3.66
340 341 4.370049 TGTTGATTTTGAGTGTTGCCATG 58.630 39.130 0.00 0.00 0.00 3.66
341 342 4.341806 TCTGTTGATTTTGAGTGTTGCCAT 59.658 37.500 0.00 0.00 0.00 4.40
342 343 3.698539 TCTGTTGATTTTGAGTGTTGCCA 59.301 39.130 0.00 0.00 0.00 4.92
343 344 4.305989 TCTGTTGATTTTGAGTGTTGCC 57.694 40.909 0.00 0.00 0.00 4.52
344 345 4.504097 GGTTCTGTTGATTTTGAGTGTTGC 59.496 41.667 0.00 0.00 0.00 4.17
346 347 4.398044 ACGGTTCTGTTGATTTTGAGTGTT 59.602 37.500 0.00 0.00 0.00 3.32
348 349 4.035091 TGACGGTTCTGTTGATTTTGAGTG 59.965 41.667 0.00 0.00 0.00 3.51
349 350 4.196193 TGACGGTTCTGTTGATTTTGAGT 58.804 39.130 0.00 0.00 0.00 3.41
351 352 4.396478 TGTTGACGGTTCTGTTGATTTTGA 59.604 37.500 0.00 0.00 0.00 2.69
352 353 4.667262 TGTTGACGGTTCTGTTGATTTTG 58.333 39.130 0.00 0.00 0.00 2.44
353 354 4.974368 TGTTGACGGTTCTGTTGATTTT 57.026 36.364 0.00 0.00 0.00 1.82
354 355 4.156922 TGTTGTTGACGGTTCTGTTGATTT 59.843 37.500 0.00 0.00 0.00 2.17
357 358 2.701107 TGTTGTTGACGGTTCTGTTGA 58.299 42.857 0.00 0.00 0.00 3.18
358 359 3.119990 AGTTGTTGTTGACGGTTCTGTTG 60.120 43.478 0.00 0.00 0.00 3.33
361 362 2.791158 GCAGTTGTTGTTGACGGTTCTG 60.791 50.000 0.00 0.00 0.00 3.02
362 363 1.400494 GCAGTTGTTGTTGACGGTTCT 59.600 47.619 0.00 0.00 0.00 3.01
364 365 1.132262 CAGCAGTTGTTGTTGACGGTT 59.868 47.619 0.00 0.00 40.12 4.44
365 366 0.732571 CAGCAGTTGTTGTTGACGGT 59.267 50.000 0.00 0.00 40.12 4.83
366 367 1.013596 TCAGCAGTTGTTGTTGACGG 58.986 50.000 0.00 0.00 41.40 4.79
368 369 5.215160 CCTATTTCAGCAGTTGTTGTTGAC 58.785 41.667 0.00 0.00 45.21 3.18
370 371 4.549458 CCCTATTTCAGCAGTTGTTGTTG 58.451 43.478 0.00 0.00 39.17 3.33
371 372 3.573967 CCCCTATTTCAGCAGTTGTTGTT 59.426 43.478 0.00 0.00 0.00 2.83
372 373 3.157087 CCCCTATTTCAGCAGTTGTTGT 58.843 45.455 0.00 0.00 0.00 3.32
373 374 3.420893 TCCCCTATTTCAGCAGTTGTTG 58.579 45.455 0.00 0.00 0.00 3.33
374 375 3.806949 TCCCCTATTTCAGCAGTTGTT 57.193 42.857 0.00 0.00 0.00 2.83
375 376 3.562176 CCTTCCCCTATTTCAGCAGTTGT 60.562 47.826 0.00 0.00 0.00 3.32
377 378 2.919602 TCCTTCCCCTATTTCAGCAGTT 59.080 45.455 0.00 0.00 0.00 3.16
378 379 2.507471 CTCCTTCCCCTATTTCAGCAGT 59.493 50.000 0.00 0.00 0.00 4.40
379 380 2.774234 TCTCCTTCCCCTATTTCAGCAG 59.226 50.000 0.00 0.00 0.00 4.24
380 381 2.774234 CTCTCCTTCCCCTATTTCAGCA 59.226 50.000 0.00 0.00 0.00 4.41
381 382 2.486370 GCTCTCCTTCCCCTATTTCAGC 60.486 54.545 0.00 0.00 0.00 4.26
382 383 3.044894 AGCTCTCCTTCCCCTATTTCAG 58.955 50.000 0.00 0.00 0.00 3.02
383 384 3.136641 AGCTCTCCTTCCCCTATTTCA 57.863 47.619 0.00 0.00 0.00 2.69
384 385 7.842236 ACTATATAGCTCTCCTTCCCCTATTTC 59.158 40.741 9.78 0.00 0.00 2.17
385 386 7.621683 CACTATATAGCTCTCCTTCCCCTATTT 59.378 40.741 9.78 0.00 0.00 1.40
386 387 7.035764 TCACTATATAGCTCTCCTTCCCCTATT 60.036 40.741 9.78 0.00 0.00 1.73
387 388 6.452000 TCACTATATAGCTCTCCTTCCCCTAT 59.548 42.308 9.78 0.00 0.00 2.57
388 389 5.796399 TCACTATATAGCTCTCCTTCCCCTA 59.204 44.000 9.78 0.00 0.00 3.53
389 390 4.608473 TCACTATATAGCTCTCCTTCCCCT 59.392 45.833 9.78 0.00 0.00 4.79
390 391 4.707934 GTCACTATATAGCTCTCCTTCCCC 59.292 50.000 9.78 0.00 0.00 4.81
391 392 5.184287 GTGTCACTATATAGCTCTCCTTCCC 59.816 48.000 9.78 0.00 0.00 3.97
393 394 5.770663 TGGTGTCACTATATAGCTCTCCTTC 59.229 44.000 9.78 0.00 0.00 3.46
394 395 5.706447 TGGTGTCACTATATAGCTCTCCTT 58.294 41.667 9.78 0.00 0.00 3.36
395 396 5.326283 TGGTGTCACTATATAGCTCTCCT 57.674 43.478 9.78 0.00 0.00 3.69
396 397 6.406692 TTTGGTGTCACTATATAGCTCTCC 57.593 41.667 9.78 10.39 0.00 3.71
427 428 2.040544 GTTGGATGGTCGCCACCTG 61.041 63.158 1.09 0.00 44.17 4.00
428 429 2.351276 GTTGGATGGTCGCCACCT 59.649 61.111 1.09 0.00 44.17 4.00
432 433 2.818274 GACGGTTGGATGGTCGCC 60.818 66.667 0.00 0.00 0.00 5.54
433 434 3.186047 CGACGGTTGGATGGTCGC 61.186 66.667 0.00 0.00 45.55 5.19
435 436 1.520666 ATCCGACGGTTGGATGGTC 59.479 57.895 25.78 0.00 44.51 4.02
436 437 3.721868 ATCCGACGGTTGGATGGT 58.278 55.556 25.78 6.17 44.51 3.55
440 441 1.304630 TCCTCATCCGACGGTTGGA 60.305 57.895 19.21 19.21 40.46 3.53
441 442 1.153628 GTCCTCATCCGACGGTTGG 60.154 63.158 21.69 8.20 0.00 3.77
442 443 0.175760 ATGTCCTCATCCGACGGTTG 59.824 55.000 17.21 17.21 32.68 3.77
443 444 0.460311 GATGTCCTCATCCGACGGTT 59.540 55.000 14.79 1.91 43.15 4.44
444 445 2.116383 GATGTCCTCATCCGACGGT 58.884 57.895 14.79 0.00 43.15 4.83
452 453 1.285667 TGTGCCATTGGATGTCCTCAT 59.714 47.619 6.95 0.00 36.82 2.90
453 454 0.697658 TGTGCCATTGGATGTCCTCA 59.302 50.000 6.95 0.00 36.82 3.86
454 455 1.098050 GTGTGCCATTGGATGTCCTC 58.902 55.000 6.95 0.00 36.82 3.71
455 456 0.700564 AGTGTGCCATTGGATGTCCT 59.299 50.000 6.95 0.00 36.82 3.85
456 457 1.098050 GAGTGTGCCATTGGATGTCC 58.902 55.000 6.95 0.00 0.00 4.02
457 458 1.825090 TGAGTGTGCCATTGGATGTC 58.175 50.000 6.95 0.00 0.00 3.06
458 459 2.165167 CTTGAGTGTGCCATTGGATGT 58.835 47.619 6.95 0.00 0.00 3.06
459 460 1.135199 GCTTGAGTGTGCCATTGGATG 60.135 52.381 6.95 0.00 0.00 3.51
460 461 1.180029 GCTTGAGTGTGCCATTGGAT 58.820 50.000 6.95 0.00 0.00 3.41
461 462 2.644887 GCTTGAGTGTGCCATTGGA 58.355 52.632 6.95 0.00 0.00 3.53
468 469 1.571460 CGAACAGGCTTGAGTGTGC 59.429 57.895 1.40 0.00 0.00 4.57
469 470 0.249868 TCCGAACAGGCTTGAGTGTG 60.250 55.000 1.40 0.00 40.77 3.82
470 471 0.687354 ATCCGAACAGGCTTGAGTGT 59.313 50.000 1.40 0.00 40.77 3.55
472 473 0.250513 GGATCCGAACAGGCTTGAGT 59.749 55.000 1.40 0.00 40.77 3.41
473 474 0.250234 TGGATCCGAACAGGCTTGAG 59.750 55.000 7.39 0.00 40.77 3.02
477 478 1.617947 GGAGTGGATCCGAACAGGCT 61.618 60.000 7.39 0.00 38.67 4.58
478 479 1.153349 GGAGTGGATCCGAACAGGC 60.153 63.158 7.39 0.00 38.67 4.85
488 489 1.690219 GGATGTGGAGCGGAGTGGAT 61.690 60.000 0.00 0.00 0.00 3.41
489 490 2.359169 GGATGTGGAGCGGAGTGGA 61.359 63.158 0.00 0.00 0.00 4.02
490 491 2.187946 GGATGTGGAGCGGAGTGG 59.812 66.667 0.00 0.00 0.00 4.00
491 492 2.202797 CGGATGTGGAGCGGAGTG 60.203 66.667 0.00 0.00 0.00 3.51
492 493 4.148825 GCGGATGTGGAGCGGAGT 62.149 66.667 0.00 0.00 0.00 3.85
493 494 3.664025 TTGCGGATGTGGAGCGGAG 62.664 63.158 0.00 0.00 0.00 4.63
494 495 3.700970 TTGCGGATGTGGAGCGGA 61.701 61.111 0.00 0.00 0.00 5.54
495 496 3.499737 GTTGCGGATGTGGAGCGG 61.500 66.667 0.00 0.00 0.00 5.52
496 497 2.434884 AGTTGCGGATGTGGAGCG 60.435 61.111 0.00 0.00 0.00 5.03
497 498 2.109126 GGAGTTGCGGATGTGGAGC 61.109 63.158 0.00 0.00 0.00 4.70
498 499 1.450312 GGGAGTTGCGGATGTGGAG 60.450 63.158 0.00 0.00 0.00 3.86
499 500 2.668632 GGGAGTTGCGGATGTGGA 59.331 61.111 0.00 0.00 0.00 4.02
500 501 2.819595 CGGGAGTTGCGGATGTGG 60.820 66.667 0.00 0.00 0.00 4.17
501 502 2.819595 CCGGGAGTTGCGGATGTG 60.820 66.667 0.00 0.00 0.00 3.21
502 503 3.000819 TCCGGGAGTTGCGGATGT 61.001 61.111 0.00 0.00 0.00 3.06
503 504 2.202932 CTCCGGGAGTTGCGGATG 60.203 66.667 16.15 0.00 0.00 3.51
504 505 4.162690 GCTCCGGGAGTTGCGGAT 62.163 66.667 24.30 0.00 31.39 4.18
518 519 4.200283 CTGTCGCTCCCTCCGCTC 62.200 72.222 0.00 0.00 0.00 5.03
543 544 2.386660 GGTCTGAGCAGCTTCGTGC 61.387 63.158 0.00 0.00 44.35 5.34
544 545 1.739562 GGGTCTGAGCAGCTTCGTG 60.740 63.158 9.30 0.00 0.00 4.35
545 546 1.758440 TTGGGTCTGAGCAGCTTCGT 61.758 55.000 9.30 0.00 0.00 3.85
546 547 1.004560 TTGGGTCTGAGCAGCTTCG 60.005 57.895 9.30 0.00 0.00 3.79
547 548 0.036022 AGTTGGGTCTGAGCAGCTTC 59.964 55.000 9.30 0.00 0.00 3.86
548 549 0.036022 GAGTTGGGTCTGAGCAGCTT 59.964 55.000 9.30 0.00 0.00 3.74
549 550 1.676384 GAGTTGGGTCTGAGCAGCT 59.324 57.895 9.30 0.00 0.00 4.24
550 551 1.376553 GGAGTTGGGTCTGAGCAGC 60.377 63.158 9.30 0.00 0.00 5.25
551 552 0.248843 GAGGAGTTGGGTCTGAGCAG 59.751 60.000 9.30 0.00 0.00 4.24
552 553 1.536073 CGAGGAGTTGGGTCTGAGCA 61.536 60.000 9.30 0.00 0.00 4.26
553 554 1.216710 CGAGGAGTTGGGTCTGAGC 59.783 63.158 0.00 0.00 0.00 4.26
555 556 1.533033 TGCGAGGAGTTGGGTCTGA 60.533 57.895 0.00 0.00 0.00 3.27
557 558 2.932234 CGTGCGAGGAGTTGGGTCT 61.932 63.158 0.00 0.00 0.00 3.85
571 572 1.503818 TTCAAAACTCCGCTCCGTGC 61.504 55.000 0.00 0.00 38.57 5.34
572 573 0.941542 TTTCAAAACTCCGCTCCGTG 59.058 50.000 0.00 0.00 0.00 4.94
573 574 0.942252 GTTTCAAAACTCCGCTCCGT 59.058 50.000 0.00 0.00 36.03 4.69
574 575 0.110823 CGTTTCAAAACTCCGCTCCG 60.111 55.000 4.28 0.00 36.77 4.63
575 576 0.237498 CCGTTTCAAAACTCCGCTCC 59.763 55.000 4.28 0.00 36.77 4.70
576 577 0.237498 CCCGTTTCAAAACTCCGCTC 59.763 55.000 4.28 0.00 36.77 5.03
577 578 0.179040 TCCCGTTTCAAAACTCCGCT 60.179 50.000 4.28 0.00 36.77 5.52
578 579 0.237498 CTCCCGTTTCAAAACTCCGC 59.763 55.000 4.28 0.00 36.77 5.54
579 580 1.798813 CTCTCCCGTTTCAAAACTCCG 59.201 52.381 4.28 0.00 36.77 4.63
580 581 2.152016 CCTCTCCCGTTTCAAAACTCC 58.848 52.381 4.28 0.00 36.77 3.85
582 583 4.576879 GATACCTCTCCCGTTTCAAAACT 58.423 43.478 4.28 0.00 36.77 2.66
583 584 3.370061 CGATACCTCTCCCGTTTCAAAAC 59.630 47.826 0.00 0.00 35.59 2.43
584 585 3.258872 TCGATACCTCTCCCGTTTCAAAA 59.741 43.478 0.00 0.00 0.00 2.44
585 586 2.827322 TCGATACCTCTCCCGTTTCAAA 59.173 45.455 0.00 0.00 0.00 2.69
587 588 2.133281 TCGATACCTCTCCCGTTTCA 57.867 50.000 0.00 0.00 0.00 2.69
588 589 2.165030 TGTTCGATACCTCTCCCGTTTC 59.835 50.000 0.00 0.00 0.00 2.78
589 590 2.173519 TGTTCGATACCTCTCCCGTTT 58.826 47.619 0.00 0.00 0.00 3.60
592 593 1.603172 GCATGTTCGATACCTCTCCCG 60.603 57.143 0.00 0.00 0.00 5.14
593 594 1.412710 TGCATGTTCGATACCTCTCCC 59.587 52.381 0.00 0.00 0.00 4.30
594 595 2.890808 TGCATGTTCGATACCTCTCC 57.109 50.000 0.00 0.00 0.00 3.71
595 596 4.371786 TGAATGCATGTTCGATACCTCTC 58.628 43.478 0.00 0.00 0.00 3.20
596 597 4.100035 TCTGAATGCATGTTCGATACCTCT 59.900 41.667 0.00 0.00 0.00 3.69
597 598 4.371786 TCTGAATGCATGTTCGATACCTC 58.628 43.478 0.00 0.00 0.00 3.85
598 599 4.406648 TCTGAATGCATGTTCGATACCT 57.593 40.909 0.00 0.00 0.00 3.08
599 600 5.468072 AGAATCTGAATGCATGTTCGATACC 59.532 40.000 0.00 1.08 0.00 2.73
600 601 6.536731 AGAATCTGAATGCATGTTCGATAC 57.463 37.500 0.00 0.00 0.00 2.24
601 602 7.066163 ACAAAGAATCTGAATGCATGTTCGATA 59.934 33.333 0.00 0.00 0.00 2.92
603 604 5.181811 ACAAAGAATCTGAATGCATGTTCGA 59.818 36.000 0.00 0.00 0.00 3.71
604 605 5.285370 CACAAAGAATCTGAATGCATGTTCG 59.715 40.000 0.00 0.00 0.00 3.95
605 606 5.575606 CCACAAAGAATCTGAATGCATGTTC 59.424 40.000 0.00 0.00 0.00 3.18
606 607 5.244402 TCCACAAAGAATCTGAATGCATGTT 59.756 36.000 0.00 0.00 0.00 2.71
608 609 5.100259 GTCCACAAAGAATCTGAATGCATG 58.900 41.667 0.00 0.00 0.00 4.06
609 610 5.014858 AGTCCACAAAGAATCTGAATGCAT 58.985 37.500 0.00 0.00 0.00 3.96
610 611 4.216902 CAGTCCACAAAGAATCTGAATGCA 59.783 41.667 0.00 0.00 0.00 3.96
611 612 4.730657 CAGTCCACAAAGAATCTGAATGC 58.269 43.478 0.00 0.00 0.00 3.56
612 613 4.458295 AGCAGTCCACAAAGAATCTGAATG 59.542 41.667 0.00 0.00 0.00 2.67
615 616 3.405831 CAGCAGTCCACAAAGAATCTGA 58.594 45.455 0.00 0.00 0.00 3.27
616 617 2.095364 GCAGCAGTCCACAAAGAATCTG 60.095 50.000 0.00 0.00 0.00 2.90
619 620 1.884579 CAGCAGCAGTCCACAAAGAAT 59.115 47.619 0.00 0.00 0.00 2.40
620 621 1.134128 TCAGCAGCAGTCCACAAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
621 622 0.469494 TCAGCAGCAGTCCACAAAGA 59.531 50.000 0.00 0.00 0.00 2.52
622 623 0.873054 CTCAGCAGCAGTCCACAAAG 59.127 55.000 0.00 0.00 0.00 2.77
623 624 1.168407 GCTCAGCAGCAGTCCACAAA 61.168 55.000 0.00 0.00 46.06 2.83
625 626 2.031616 GCTCAGCAGCAGTCCACA 59.968 61.111 0.00 0.00 46.06 4.17
639 640 1.300542 GCATGGGTCGAGCTAGCTC 60.301 63.158 31.12 31.12 39.55 4.09
649 650 2.436173 AGCTCTAAACTAGGCATGGGTC 59.564 50.000 0.00 0.00 0.00 4.46
651 652 3.567478 AAGCTCTAAACTAGGCATGGG 57.433 47.619 0.00 0.00 0.00 4.00
655 656 3.194968 ACGCTAAAGCTCTAAACTAGGCA 59.805 43.478 0.00 0.00 39.32 4.75
664 665 1.362768 TCGACGACGCTAAAGCTCTA 58.637 50.000 1.48 0.00 39.32 2.43
666 667 1.546834 ATTCGACGACGCTAAAGCTC 58.453 50.000 1.48 0.00 39.32 4.09
701 702 8.630037 AGTTACAAGTATTTTTCTTTCTGTGGG 58.370 33.333 0.00 0.00 0.00 4.61
702 703 9.665264 GAGTTACAAGTATTTTTCTTTCTGTGG 57.335 33.333 0.00 0.00 0.00 4.17
716 717 8.947115 GCCTGACATAAAAAGAGTTACAAGTAT 58.053 33.333 0.00 0.00 0.00 2.12
717 718 7.934665 TGCCTGACATAAAAAGAGTTACAAGTA 59.065 33.333 0.00 0.00 0.00 2.24
718 719 6.770785 TGCCTGACATAAAAAGAGTTACAAGT 59.229 34.615 0.00 0.00 0.00 3.16
719 720 7.078228 GTGCCTGACATAAAAAGAGTTACAAG 58.922 38.462 0.00 0.00 0.00 3.16
721 722 5.472137 GGTGCCTGACATAAAAAGAGTTACA 59.528 40.000 0.00 0.00 0.00 2.41
726 727 4.761739 TCTTGGTGCCTGACATAAAAAGAG 59.238 41.667 0.00 0.00 0.00 2.85
733 734 3.008923 TCATTGTCTTGGTGCCTGACATA 59.991 43.478 14.46 8.87 39.92 2.29
735 736 1.142667 TCATTGTCTTGGTGCCTGACA 59.857 47.619 11.37 11.37 38.71 3.58
736 737 1.896220 TCATTGTCTTGGTGCCTGAC 58.104 50.000 7.58 7.58 0.00 3.51
740 741 4.240096 CTGAATTTCATTGTCTTGGTGCC 58.760 43.478 0.00 0.00 0.00 5.01
741 742 3.676646 GCTGAATTTCATTGTCTTGGTGC 59.323 43.478 0.00 0.00 0.00 5.01
742 743 4.873817 TGCTGAATTTCATTGTCTTGGTG 58.126 39.130 0.00 0.00 0.00 4.17
743 744 4.560108 GCTGCTGAATTTCATTGTCTTGGT 60.560 41.667 0.00 0.00 0.00 3.67
867 868 4.453751 GGTTTGGGTCAACTTGTACTACA 58.546 43.478 0.00 0.00 0.00 2.74
924 926 4.469469 TTTGGTGGAGGAAGGAAGAAAT 57.531 40.909 0.00 0.00 0.00 2.17
927 929 2.027192 CGATTTGGTGGAGGAAGGAAGA 60.027 50.000 0.00 0.00 0.00 2.87
928 930 2.359900 CGATTTGGTGGAGGAAGGAAG 58.640 52.381 0.00 0.00 0.00 3.46
929 931 1.613255 GCGATTTGGTGGAGGAAGGAA 60.613 52.381 0.00 0.00 0.00 3.36
966 969 0.684479 CGAGATCTGGGAGTGTGGGA 60.684 60.000 0.00 0.00 0.00 4.37
967 970 1.819229 CGAGATCTGGGAGTGTGGG 59.181 63.158 0.00 0.00 0.00 4.61
1959 5997 1.190833 CCTGCAGACAGTCCACCTCT 61.191 60.000 17.39 0.00 42.81 3.69
1971 6009 0.614697 TGGACGAATCTCCCTGCAGA 60.615 55.000 17.39 0.00 0.00 4.26
1986 6024 1.346068 AGCACTCTCCTTGACTTGGAC 59.654 52.381 0.00 0.00 0.00 4.02
2144 6182 7.012421 ACCAAGCTCCATTTTAATCGAACTATC 59.988 37.037 0.00 0.00 0.00 2.08
2303 6342 9.549078 TTCATATGATAAAAGTACGCCACATAA 57.451 29.630 6.17 0.00 0.00 1.90
2341 6380 6.862209 TGCTTCAAAATGGTATGGTATCAAC 58.138 36.000 0.00 0.00 0.00 3.18
2371 6410 9.013229 AGTTTGCTATCATAATCAAACACAGAA 57.987 29.630 17.67 0.00 46.23 3.02
2377 6788 9.846248 AAGACAAGTTTGCTATCATAATCAAAC 57.154 29.630 11.53 11.53 44.97 2.93
2380 6791 9.453572 AGAAAGACAAGTTTGCTATCATAATCA 57.546 29.630 0.00 0.00 0.00 2.57
2482 6895 8.704849 TGTACTGATTTAAATATCCCCATTGG 57.295 34.615 0.00 0.00 0.00 3.16
2546 6959 8.326713 GCGCTCTTCATGTATGAGAAATATATG 58.673 37.037 0.00 0.00 38.19 1.78
2562 6985 0.674895 GTTCACCTGGCGCTCTTCAT 60.675 55.000 7.64 0.00 0.00 2.57
2572 6995 5.614324 TCATTGGACTATAGTTCACCTGG 57.386 43.478 13.73 4.13 32.26 4.45
2573 6996 9.613428 TTTAATCATTGGACTATAGTTCACCTG 57.387 33.333 13.73 13.58 32.26 4.00
2655 7079 5.526479 CACTGGACACCTTGATGAATCATAG 59.474 44.000 0.00 0.00 36.56 2.23
2725 7149 8.012957 AGTGACCTTATTATACTCAGGACAAG 57.987 38.462 0.00 0.00 33.71 3.16
2752 7176 7.581213 TGATGTCAATTGTTTAACTCAAGGT 57.419 32.000 5.13 0.00 0.00 3.50
2841 7274 2.446435 TGTCCTGAAGCCTATTTTGCC 58.554 47.619 0.00 0.00 0.00 4.52
2880 7313 2.877043 AGCAAACAAACAGAAGCCAG 57.123 45.000 0.00 0.00 0.00 4.85
2979 7412 5.393461 CCCAAAGCCAATCAGTGTAGAATTC 60.393 44.000 0.00 0.00 0.00 2.17
2988 7421 0.178953 AGCACCCAAAGCCAATCAGT 60.179 50.000 0.00 0.00 0.00 3.41
2995 7428 3.376918 GCCTCAGCACCCAAAGCC 61.377 66.667 0.00 0.00 39.53 4.35
3011 7444 4.443063 AGCGGAAAAACTTAAAATCGTTGC 59.557 37.500 0.00 0.00 0.00 4.17
3019 7452 5.127491 TCTCCTGAAGCGGAAAAACTTAAA 58.873 37.500 0.00 0.00 31.44 1.52
3027 7460 4.253685 CAAAGTATCTCCTGAAGCGGAAA 58.746 43.478 0.00 0.00 31.44 3.13
3030 7463 3.252974 ACAAAGTATCTCCTGAAGCGG 57.747 47.619 0.00 0.00 0.00 5.52
3032 7465 4.246458 ACGAACAAAGTATCTCCTGAAGC 58.754 43.478 0.00 0.00 0.00 3.86
3040 7473 6.534079 GCACCATACTTACGAACAAAGTATCT 59.466 38.462 5.69 0.00 44.47 1.98
3044 7477 4.638304 AGCACCATACTTACGAACAAAGT 58.362 39.130 0.00 0.00 40.25 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.