Multiple sequence alignment - TraesCS4A01G376000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G376000 chr4A 100.000 3386 0 0 1 3386 650367006 650370391 0.000000e+00 6253
1 TraesCS4A01G376000 chr4A 86.581 313 20 8 931 1233 418428695 418428395 3.260000e-85 326
2 TraesCS4A01G376000 chr4A 89.412 170 7 6 931 1091 476163758 476163925 1.590000e-48 204
3 TraesCS4A01G376000 chr7D 89.674 1501 118 22 1707 3189 42810732 42812213 0.000000e+00 1879
4 TraesCS4A01G376000 chr7D 93.289 894 27 14 725 1603 42809724 42810599 0.000000e+00 1288
5 TraesCS4A01G376000 chr7D 84.520 323 31 4 1 322 42806224 42806528 5.490000e-78 302
6 TraesCS4A01G376000 chr7D 87.895 190 23 0 3197 3386 42812287 42812476 1.220000e-54 224
7 TraesCS4A01G376000 chr7D 94.318 88 5 0 324 411 42809631 42809718 5.890000e-28 135
8 TraesCS4A01G376000 chr7A 92.551 886 50 12 721 1594 42497435 42498316 0.000000e+00 1256
9 TraesCS4A01G376000 chr7A 88.103 580 24 15 920 1489 79797848 79798392 0.000000e+00 647
10 TraesCS4A01G376000 chr7A 88.049 569 25 16 931 1489 669446986 669446451 4.770000e-178 634
11 TraesCS4A01G376000 chr7A 86.678 593 48 8 2606 3189 42500001 42500571 2.220000e-176 628
12 TraesCS4A01G376000 chr7A 80.820 829 115 26 2099 2908 42498775 42499578 8.030000e-171 610
13 TraesCS4A01G376000 chr7A 86.378 323 38 3 1 322 42495788 42496105 6.950000e-92 348
14 TraesCS4A01G376000 chr7A 87.859 313 16 10 931 1233 601863848 601863548 6.950000e-92 348
15 TraesCS4A01G376000 chr7A 91.139 158 4 2 931 1079 189868681 189868837 4.430000e-49 206
16 TraesCS4A01G376000 chr2D 88.889 1026 81 23 1729 2745 21142138 21141137 0.000000e+00 1232
17 TraesCS4A01G376000 chr2D 90.314 733 31 8 880 1581 21143040 21142317 0.000000e+00 924
18 TraesCS4A01G376000 chr4D 93.165 673 24 7 931 1594 435101794 435101135 0.000000e+00 968
19 TraesCS4A01G376000 chr5A 92.125 673 31 11 931 1594 512719380 512720039 0.000000e+00 929
20 TraesCS4A01G376000 chr5A 95.000 340 17 0 2406 2745 503649412 503649751 4.970000e-148 534
21 TraesCS4A01G376000 chr1D 91.679 673 34 8 931 1594 54465728 54466387 0.000000e+00 913
22 TraesCS4A01G376000 chr1D 95.588 340 15 0 2406 2745 380824710 380825049 2.300000e-151 545
23 TraesCS4A01G376000 chr3B 90.639 673 40 7 931 1594 710716215 710716873 0.000000e+00 872
24 TraesCS4A01G376000 chr6A 87.522 569 28 19 931 1489 357869932 357870467 4.800000e-173 617
25 TraesCS4A01G376000 chr7B 95.808 334 14 0 2412 2745 48226723 48226390 1.070000e-149 540
26 TraesCS4A01G376000 chr7B 95.509 334 15 0 2412 2745 481551115 481550782 4.970000e-148 534
27 TraesCS4A01G376000 chr6B 95.808 334 14 0 2412 2745 620944039 620943706 1.070000e-149 540
28 TraesCS4A01G376000 chr1B 94.985 339 17 0 2406 2744 677151604 677151942 1.790000e-147 532
29 TraesCS4A01G376000 chr3A 87.129 303 38 1 417 719 20138331 20138632 3.240000e-90 342
30 TraesCS4A01G376000 chr3A 85.484 310 36 6 1974 2281 401132200 401132502 7.050000e-82 315
31 TraesCS4A01G376000 chr4B 87.197 289 36 1 431 719 648176568 648176855 9.060000e-86 327
32 TraesCS4A01G376000 chr3D 90.816 196 18 0 525 720 564982073 564981878 2.590000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G376000 chr4A 650367006 650370391 3385 False 6253.0 6253 100.00000 1 3386 1 chr4A.!!$F2 3385
1 TraesCS4A01G376000 chr7D 42806224 42812476 6252 False 765.6 1879 89.93920 1 3386 5 chr7D.!!$F1 3385
2 TraesCS4A01G376000 chr7A 42495788 42500571 4783 False 710.5 1256 86.60675 1 3189 4 chr7A.!!$F3 3188
3 TraesCS4A01G376000 chr7A 79797848 79798392 544 False 647.0 647 88.10300 920 1489 1 chr7A.!!$F1 569
4 TraesCS4A01G376000 chr7A 669446451 669446986 535 True 634.0 634 88.04900 931 1489 1 chr7A.!!$R2 558
5 TraesCS4A01G376000 chr2D 21141137 21143040 1903 True 1078.0 1232 89.60150 880 2745 2 chr2D.!!$R1 1865
6 TraesCS4A01G376000 chr4D 435101135 435101794 659 True 968.0 968 93.16500 931 1594 1 chr4D.!!$R1 663
7 TraesCS4A01G376000 chr5A 512719380 512720039 659 False 929.0 929 92.12500 931 1594 1 chr5A.!!$F2 663
8 TraesCS4A01G376000 chr1D 54465728 54466387 659 False 913.0 913 91.67900 931 1594 1 chr1D.!!$F1 663
9 TraesCS4A01G376000 chr3B 710716215 710716873 658 False 872.0 872 90.63900 931 1594 1 chr3B.!!$F1 663
10 TraesCS4A01G376000 chr6A 357869932 357870467 535 False 617.0 617 87.52200 931 1489 1 chr6A.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 3884 0.033504 TAGAGAATCCGCGCCCATTC 59.966 55.000 15.15 15.15 33.66 2.67 F
723 3885 1.523711 GAGAATCCGCGCCCATTCA 60.524 57.895 21.80 0.00 32.28 2.57 F
1891 5197 0.960364 TCCCCTGCGATTTGAGTTGC 60.960 55.000 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 5019 0.179189 GCAGCAGCAACGATGGTAAC 60.179 55.0 0.00 0.0 41.58 2.50 R
2032 5346 0.710588 TCCAGCCCTACAGAGAAGGA 59.289 55.0 0.00 0.0 36.08 3.36 R
3311 7433 0.106149 CGCCTACCTTATGGTCACCC 59.894 60.0 3.06 0.0 44.78 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.526713 GACATGTAACATATGATGCCTAGATAG 57.473 37.037 10.38 0.00 0.00 2.08
84 85 5.592054 TGATGCCTAGATAGTTTTGAGTCG 58.408 41.667 0.00 0.00 0.00 4.18
87 88 4.461431 TGCCTAGATAGTTTTGAGTCGTGA 59.539 41.667 0.00 0.00 0.00 4.35
105 106 5.175856 GTCGTGATTGCCATTGAGTCTATAC 59.824 44.000 0.00 0.00 0.00 1.47
122 123 2.203800 TACGAACCGATGTGCATCTC 57.796 50.000 10.05 1.35 35.72 2.75
124 125 1.134699 ACGAACCGATGTGCATCTCAT 60.135 47.619 10.05 0.00 35.72 2.90
136 137 5.008980 TGTGCATCTCATAATGTGTTTGGA 58.991 37.500 0.00 0.00 0.00 3.53
144 145 8.908786 TCTCATAATGTGTTTGGATTAGGATC 57.091 34.615 0.00 0.00 27.79 3.36
149 150 5.160607 TGTGTTTGGATTAGGATCTCGTT 57.839 39.130 0.00 0.00 32.66 3.85
155 156 8.701895 TGTTTGGATTAGGATCTCGTTACTTAT 58.298 33.333 0.00 0.00 32.66 1.73
171 172 8.594687 TCGTTACTTATTTTAATTACGCTGGTC 58.405 33.333 0.00 0.00 0.00 4.02
207 208 9.646427 GTTAAATTATGTTTGGATTGGTTGCTA 57.354 29.630 0.00 0.00 0.00 3.49
268 269 1.071471 GATACACCATCAGCCCGGG 59.929 63.158 19.09 19.09 33.46 5.73
298 299 6.775142 TCTGAAAATGATACAACCCTTTCACA 59.225 34.615 0.00 0.00 31.46 3.58
302 303 7.396540 AAATGATACAACCCTTTCACATCTC 57.603 36.000 0.00 0.00 0.00 2.75
322 324 2.766263 TCCTTACCCTACATCTGCACAG 59.234 50.000 0.00 0.00 0.00 3.66
394 3556 7.749570 CGACGGATAAAGTATAGAACCACTATG 59.250 40.741 0.00 0.00 41.33 2.23
419 3581 3.367992 TGGCACACATTTGTTCATGAC 57.632 42.857 0.00 0.00 31.66 3.06
420 3582 2.287487 TGGCACACATTTGTTCATGACG 60.287 45.455 0.00 0.00 31.66 4.35
421 3583 2.318578 GCACACATTTGTTCATGACGG 58.681 47.619 0.00 0.00 31.66 4.79
422 3584 2.318578 CACACATTTGTTCATGACGGC 58.681 47.619 0.00 0.00 31.66 5.68
423 3585 2.030893 CACACATTTGTTCATGACGGCT 60.031 45.455 0.00 0.00 31.66 5.52
424 3586 2.030893 ACACATTTGTTCATGACGGCTG 60.031 45.455 0.00 0.00 28.43 4.85
425 3587 2.030893 CACATTTGTTCATGACGGCTGT 60.031 45.455 0.00 0.00 0.00 4.40
426 3588 2.030893 ACATTTGTTCATGACGGCTGTG 60.031 45.455 0.80 0.00 0.00 3.66
427 3589 1.960417 TTTGTTCATGACGGCTGTGA 58.040 45.000 0.80 0.00 0.00 3.58
428 3590 1.960417 TTGTTCATGACGGCTGTGAA 58.040 45.000 0.80 5.69 0.00 3.18
429 3591 2.183478 TGTTCATGACGGCTGTGAAT 57.817 45.000 0.80 0.00 34.71 2.57
430 3592 2.503331 TGTTCATGACGGCTGTGAATT 58.497 42.857 0.80 0.00 34.71 2.17
431 3593 2.483877 TGTTCATGACGGCTGTGAATTC 59.516 45.455 0.80 0.00 34.71 2.17
432 3594 2.744202 GTTCATGACGGCTGTGAATTCT 59.256 45.455 0.80 0.00 34.71 2.40
433 3595 2.621338 TCATGACGGCTGTGAATTCTC 58.379 47.619 0.80 3.61 0.00 2.87
434 3596 2.234661 TCATGACGGCTGTGAATTCTCT 59.765 45.455 0.80 0.00 0.00 3.10
435 3597 3.447229 TCATGACGGCTGTGAATTCTCTA 59.553 43.478 0.80 0.00 0.00 2.43
436 3598 3.232213 TGACGGCTGTGAATTCTCTAC 57.768 47.619 0.80 0.00 0.00 2.59
437 3599 2.094182 TGACGGCTGTGAATTCTCTACC 60.094 50.000 0.80 7.93 0.00 3.18
438 3600 1.135083 ACGGCTGTGAATTCTCTACCG 60.135 52.381 26.08 26.08 44.70 4.02
439 3601 1.135083 CGGCTGTGAATTCTCTACCGT 60.135 52.381 22.56 0.00 34.83 4.83
440 3602 2.271800 GGCTGTGAATTCTCTACCGTG 58.728 52.381 7.05 0.00 0.00 4.94
441 3603 1.661112 GCTGTGAATTCTCTACCGTGC 59.339 52.381 7.05 0.00 0.00 5.34
442 3604 2.271800 CTGTGAATTCTCTACCGTGCC 58.728 52.381 7.05 0.00 0.00 5.01
443 3605 1.621317 TGTGAATTCTCTACCGTGCCA 59.379 47.619 7.05 0.00 0.00 4.92
444 3606 2.236146 TGTGAATTCTCTACCGTGCCAT 59.764 45.455 7.05 0.00 0.00 4.40
445 3607 2.609459 GTGAATTCTCTACCGTGCCATG 59.391 50.000 7.05 0.00 0.00 3.66
446 3608 2.213499 GAATTCTCTACCGTGCCATGG 58.787 52.381 7.63 7.63 0.00 3.66
447 3609 0.469917 ATTCTCTACCGTGCCATGGG 59.530 55.000 15.13 0.00 0.00 4.00
458 3620 2.679092 CCATGGGCAAGGCAGAGA 59.321 61.111 2.85 0.00 0.00 3.10
459 3621 1.453379 CCATGGGCAAGGCAGAGAG 60.453 63.158 2.85 0.00 0.00 3.20
460 3622 2.119655 CATGGGCAAGGCAGAGAGC 61.120 63.158 0.00 0.00 44.65 4.09
461 3623 2.307162 ATGGGCAAGGCAGAGAGCT 61.307 57.895 0.00 0.00 44.79 4.09
462 3624 0.984961 ATGGGCAAGGCAGAGAGCTA 60.985 55.000 0.00 0.00 44.79 3.32
463 3625 1.153269 GGGCAAGGCAGAGAGCTAC 60.153 63.158 0.00 0.00 44.79 3.58
464 3626 1.599047 GGCAAGGCAGAGAGCTACA 59.401 57.895 0.00 0.00 44.79 2.74
465 3627 0.461693 GGCAAGGCAGAGAGCTACAG 60.462 60.000 0.00 0.00 44.79 2.74
466 3628 0.248843 GCAAGGCAGAGAGCTACAGT 59.751 55.000 0.00 0.00 44.79 3.55
467 3629 2.006056 GCAAGGCAGAGAGCTACAGTG 61.006 57.143 0.00 0.00 44.79 3.66
468 3630 0.248843 AAGGCAGAGAGCTACAGTGC 59.751 55.000 0.00 0.00 44.79 4.40
469 3631 1.153469 GGCAGAGAGCTACAGTGCC 60.153 63.158 11.81 11.81 46.49 5.01
470 3632 1.896694 GCAGAGAGCTACAGTGCCT 59.103 57.895 0.00 0.00 41.15 4.75
471 3633 0.179113 GCAGAGAGCTACAGTGCCTC 60.179 60.000 0.00 0.00 41.15 4.70
472 3634 1.473258 CAGAGAGCTACAGTGCCTCT 58.527 55.000 7.94 7.94 39.43 3.69
480 3642 3.993535 CAGTGCCTCTGCCTTTCC 58.006 61.111 0.00 0.00 37.36 3.13
481 3643 1.377994 CAGTGCCTCTGCCTTTCCT 59.622 57.895 0.00 0.00 37.36 3.36
482 3644 0.676151 CAGTGCCTCTGCCTTTCCTC 60.676 60.000 0.00 0.00 37.36 3.71
483 3645 0.839853 AGTGCCTCTGCCTTTCCTCT 60.840 55.000 0.00 0.00 36.33 3.69
484 3646 0.037447 GTGCCTCTGCCTTTCCTCTT 59.963 55.000 0.00 0.00 36.33 2.85
485 3647 0.326264 TGCCTCTGCCTTTCCTCTTC 59.674 55.000 0.00 0.00 36.33 2.87
486 3648 0.617935 GCCTCTGCCTTTCCTCTTCT 59.382 55.000 0.00 0.00 0.00 2.85
487 3649 1.004161 GCCTCTGCCTTTCCTCTTCTT 59.996 52.381 0.00 0.00 0.00 2.52
488 3650 2.939198 GCCTCTGCCTTTCCTCTTCTTC 60.939 54.545 0.00 0.00 0.00 2.87
489 3651 2.355615 CCTCTGCCTTTCCTCTTCTTCC 60.356 54.545 0.00 0.00 0.00 3.46
490 3652 1.276421 TCTGCCTTTCCTCTTCTTCCG 59.724 52.381 0.00 0.00 0.00 4.30
491 3653 1.002544 CTGCCTTTCCTCTTCTTCCGT 59.997 52.381 0.00 0.00 0.00 4.69
492 3654 1.420138 TGCCTTTCCTCTTCTTCCGTT 59.580 47.619 0.00 0.00 0.00 4.44
493 3655 2.158667 TGCCTTTCCTCTTCTTCCGTTT 60.159 45.455 0.00 0.00 0.00 3.60
494 3656 2.226674 GCCTTTCCTCTTCTTCCGTTTG 59.773 50.000 0.00 0.00 0.00 2.93
495 3657 3.477530 CCTTTCCTCTTCTTCCGTTTGT 58.522 45.455 0.00 0.00 0.00 2.83
496 3658 3.883489 CCTTTCCTCTTCTTCCGTTTGTT 59.117 43.478 0.00 0.00 0.00 2.83
497 3659 4.261197 CCTTTCCTCTTCTTCCGTTTGTTG 60.261 45.833 0.00 0.00 0.00 3.33
498 3660 2.846193 TCCTCTTCTTCCGTTTGTTGG 58.154 47.619 0.00 0.00 0.00 3.77
499 3661 2.436542 TCCTCTTCTTCCGTTTGTTGGA 59.563 45.455 0.00 0.00 0.00 3.53
500 3662 3.072476 TCCTCTTCTTCCGTTTGTTGGAT 59.928 43.478 0.00 0.00 34.91 3.41
501 3663 3.437049 CCTCTTCTTCCGTTTGTTGGATC 59.563 47.826 0.00 0.00 34.91 3.36
502 3664 3.064207 TCTTCTTCCGTTTGTTGGATCG 58.936 45.455 0.00 0.00 34.91 3.69
503 3665 2.823924 TCTTCCGTTTGTTGGATCGA 57.176 45.000 0.00 0.00 34.91 3.59
504 3666 2.683968 TCTTCCGTTTGTTGGATCGAG 58.316 47.619 0.00 0.00 34.91 4.04
505 3667 2.297880 TCTTCCGTTTGTTGGATCGAGA 59.702 45.455 0.00 0.00 34.91 4.04
506 3668 2.823924 TCCGTTTGTTGGATCGAGAA 57.176 45.000 0.00 0.00 0.00 2.87
507 3669 2.409975 TCCGTTTGTTGGATCGAGAAC 58.590 47.619 0.00 0.00 0.00 3.01
508 3670 1.463444 CCGTTTGTTGGATCGAGAACC 59.537 52.381 0.00 0.00 0.00 3.62
509 3671 2.139917 CGTTTGTTGGATCGAGAACCA 58.860 47.619 0.00 0.00 0.00 3.67
510 3672 2.546368 CGTTTGTTGGATCGAGAACCAA 59.454 45.455 10.24 10.24 42.78 3.67
513 3675 3.525619 TTGGATCGAGAACCAACCG 57.474 52.632 10.24 0.00 40.59 4.44
514 3676 0.672401 TTGGATCGAGAACCAACCGC 60.672 55.000 10.24 0.00 40.59 5.68
515 3677 1.218316 GGATCGAGAACCAACCGCT 59.782 57.895 0.00 0.00 0.00 5.52
516 3678 0.806492 GGATCGAGAACCAACCGCTC 60.806 60.000 0.00 0.00 0.00 5.03
517 3679 0.108804 GATCGAGAACCAACCGCTCA 60.109 55.000 0.00 0.00 0.00 4.26
518 3680 0.108615 ATCGAGAACCAACCGCTCAG 60.109 55.000 0.00 0.00 0.00 3.35
519 3681 1.176619 TCGAGAACCAACCGCTCAGA 61.177 55.000 0.00 0.00 0.00 3.27
520 3682 0.108615 CGAGAACCAACCGCTCAGAT 60.109 55.000 0.00 0.00 0.00 2.90
521 3683 1.646189 GAGAACCAACCGCTCAGATC 58.354 55.000 0.00 0.00 0.00 2.75
522 3684 1.205893 GAGAACCAACCGCTCAGATCT 59.794 52.381 0.00 0.00 0.00 2.75
523 3685 1.066573 AGAACCAACCGCTCAGATCTG 60.067 52.381 17.07 17.07 0.00 2.90
524 3686 0.976641 AACCAACCGCTCAGATCTGA 59.023 50.000 23.75 23.75 38.06 3.27
525 3687 1.198713 ACCAACCGCTCAGATCTGAT 58.801 50.000 25.30 8.32 39.13 2.90
526 3688 1.134580 ACCAACCGCTCAGATCTGATG 60.135 52.381 25.30 18.93 39.13 3.07
527 3689 0.935898 CAACCGCTCAGATCTGATGC 59.064 55.000 25.30 25.23 39.13 3.91
528 3690 0.538584 AACCGCTCAGATCTGATGCA 59.461 50.000 29.83 12.67 39.13 3.96
529 3691 0.538584 ACCGCTCAGATCTGATGCAA 59.461 50.000 29.83 12.37 39.13 4.08
530 3692 0.935898 CCGCTCAGATCTGATGCAAC 59.064 55.000 29.83 17.43 39.13 4.17
531 3693 1.648504 CGCTCAGATCTGATGCAACA 58.351 50.000 29.83 11.24 39.13 3.33
532 3694 1.593469 CGCTCAGATCTGATGCAACAG 59.407 52.381 29.83 17.32 39.13 3.16
533 3695 2.630158 GCTCAGATCTGATGCAACAGT 58.370 47.619 27.84 10.64 39.13 3.55
534 3696 3.736126 CGCTCAGATCTGATGCAACAGTA 60.736 47.826 29.83 10.48 39.13 2.74
535 3697 3.555139 GCTCAGATCTGATGCAACAGTAC 59.445 47.826 27.84 16.36 39.13 2.73
536 3698 4.752146 CTCAGATCTGATGCAACAGTACA 58.248 43.478 25.30 5.17 39.13 2.90
537 3699 4.752146 TCAGATCTGATGCAACAGTACAG 58.248 43.478 21.67 13.91 38.79 2.74
538 3700 4.221482 TCAGATCTGATGCAACAGTACAGT 59.779 41.667 21.67 6.18 38.79 3.55
539 3701 4.565962 CAGATCTGATGCAACAGTACAGTC 59.434 45.833 21.74 13.32 38.79 3.51
540 3702 2.946564 TCTGATGCAACAGTACAGTCG 58.053 47.619 21.74 0.00 38.79 4.18
541 3703 1.391485 CTGATGCAACAGTACAGTCGC 59.609 52.381 15.39 0.00 33.73 5.19
542 3704 0.721718 GATGCAACAGTACAGTCGCC 59.278 55.000 0.00 0.00 0.00 5.54
543 3705 0.034756 ATGCAACAGTACAGTCGCCA 59.965 50.000 0.00 0.00 0.00 5.69
544 3706 0.878523 TGCAACAGTACAGTCGCCAC 60.879 55.000 0.00 0.00 0.00 5.01
545 3707 0.878523 GCAACAGTACAGTCGCCACA 60.879 55.000 0.00 0.00 0.00 4.17
546 3708 1.139989 CAACAGTACAGTCGCCACAG 58.860 55.000 0.00 0.00 0.00 3.66
547 3709 0.750850 AACAGTACAGTCGCCACAGT 59.249 50.000 0.00 0.00 0.00 3.55
548 3710 1.612676 ACAGTACAGTCGCCACAGTA 58.387 50.000 0.00 0.00 0.00 2.74
549 3711 1.268899 ACAGTACAGTCGCCACAGTAC 59.731 52.381 8.74 8.74 42.87 2.73
550 3712 1.906990 AGTACAGTCGCCACAGTACT 58.093 50.000 12.72 12.72 45.98 2.73
551 3713 2.259505 GTACAGTCGCCACAGTACTC 57.740 55.000 9.39 0.00 40.60 2.59
552 3714 0.800631 TACAGTCGCCACAGTACTCG 59.199 55.000 0.00 0.00 0.00 4.18
553 3715 0.887836 ACAGTCGCCACAGTACTCGA 60.888 55.000 0.00 0.00 0.00 4.04
554 3716 0.240145 CAGTCGCCACAGTACTCGAA 59.760 55.000 6.02 0.00 32.49 3.71
555 3717 0.956633 AGTCGCCACAGTACTCGAAA 59.043 50.000 6.02 0.00 32.49 3.46
556 3718 1.058404 GTCGCCACAGTACTCGAAAC 58.942 55.000 6.02 0.00 32.49 2.78
557 3719 0.669619 TCGCCACAGTACTCGAAACA 59.330 50.000 2.21 0.00 0.00 2.83
558 3720 1.060713 CGCCACAGTACTCGAAACAG 58.939 55.000 0.00 0.00 0.00 3.16
559 3721 1.602165 CGCCACAGTACTCGAAACAGT 60.602 52.381 0.00 0.00 0.00 3.55
560 3722 1.792949 GCCACAGTACTCGAAACAGTG 59.207 52.381 13.17 13.17 35.00 3.66
561 3723 2.545113 GCCACAGTACTCGAAACAGTGA 60.545 50.000 18.79 0.00 36.71 3.41
562 3724 3.050619 CCACAGTACTCGAAACAGTGAC 58.949 50.000 18.79 1.38 36.71 3.67
563 3725 3.490249 CCACAGTACTCGAAACAGTGACA 60.490 47.826 18.79 0.00 36.71 3.58
564 3726 4.299155 CACAGTACTCGAAACAGTGACAT 58.701 43.478 14.35 0.00 36.71 3.06
565 3727 4.148871 CACAGTACTCGAAACAGTGACATG 59.851 45.833 14.35 0.00 36.71 3.21
566 3728 4.037565 ACAGTACTCGAAACAGTGACATGA 59.962 41.667 0.00 0.00 0.00 3.07
567 3729 4.982295 CAGTACTCGAAACAGTGACATGAA 59.018 41.667 0.00 0.00 0.00 2.57
568 3730 4.982916 AGTACTCGAAACAGTGACATGAAC 59.017 41.667 0.00 0.00 0.00 3.18
569 3731 3.792401 ACTCGAAACAGTGACATGAACA 58.208 40.909 0.00 0.00 0.00 3.18
570 3732 4.380531 ACTCGAAACAGTGACATGAACAT 58.619 39.130 0.00 0.00 0.00 2.71
571 3733 4.212004 ACTCGAAACAGTGACATGAACATG 59.788 41.667 12.43 12.43 44.15 3.21
572 3734 4.376146 TCGAAACAGTGACATGAACATGA 58.624 39.130 19.56 0.00 41.20 3.07
573 3735 4.813697 TCGAAACAGTGACATGAACATGAA 59.186 37.500 19.56 6.37 41.20 2.57
574 3736 4.905866 CGAAACAGTGACATGAACATGAAC 59.094 41.667 19.56 15.88 41.20 3.18
575 3737 4.472691 AACAGTGACATGAACATGAACG 57.527 40.909 19.56 14.20 41.20 3.95
576 3738 3.466836 ACAGTGACATGAACATGAACGT 58.533 40.909 19.56 14.65 41.20 3.99
577 3739 3.876914 ACAGTGACATGAACATGAACGTT 59.123 39.130 19.56 0.00 41.20 3.99
578 3740 5.053811 ACAGTGACATGAACATGAACGTTA 58.946 37.500 19.56 0.00 41.20 3.18
579 3741 5.525745 ACAGTGACATGAACATGAACGTTAA 59.474 36.000 19.56 0.00 41.20 2.01
580 3742 6.037720 ACAGTGACATGAACATGAACGTTAAA 59.962 34.615 19.56 0.00 41.20 1.52
581 3743 6.356977 CAGTGACATGAACATGAACGTTAAAC 59.643 38.462 19.56 8.17 41.20 2.01
582 3744 6.037720 AGTGACATGAACATGAACGTTAAACA 59.962 34.615 19.56 0.00 41.20 2.83
583 3745 6.689241 GTGACATGAACATGAACGTTAAACAA 59.311 34.615 19.56 0.00 41.20 2.83
584 3746 7.378461 GTGACATGAACATGAACGTTAAACAAT 59.622 33.333 19.56 0.00 41.20 2.71
585 3747 7.378194 TGACATGAACATGAACGTTAAACAATG 59.622 33.333 19.56 3.50 41.20 2.82
586 3748 6.143758 ACATGAACATGAACGTTAAACAATGC 59.856 34.615 19.56 0.00 41.20 3.56
587 3749 4.672862 TGAACATGAACGTTAAACAATGCG 59.327 37.500 0.00 0.00 0.00 4.73
588 3750 4.217754 ACATGAACGTTAAACAATGCGT 57.782 36.364 0.00 0.00 39.37 5.24
592 3754 1.665766 ACGTTAAACAATGCGTTCGC 58.334 45.000 10.34 10.34 36.59 4.70
593 3755 1.262151 ACGTTAAACAATGCGTTCGCT 59.738 42.857 17.63 1.53 36.59 4.93
594 3756 2.475864 ACGTTAAACAATGCGTTCGCTA 59.524 40.909 17.63 5.43 36.59 4.26
595 3757 2.830480 CGTTAAACAATGCGTTCGCTAC 59.170 45.455 17.63 3.51 36.59 3.58
596 3758 3.662195 CGTTAAACAATGCGTTCGCTACA 60.662 43.478 17.63 0.00 36.59 2.74
597 3759 2.594529 AAACAATGCGTTCGCTACAG 57.405 45.000 17.63 8.02 36.59 2.74
598 3760 1.508632 AACAATGCGTTCGCTACAGT 58.491 45.000 17.63 8.57 29.27 3.55
599 3761 0.790207 ACAATGCGTTCGCTACAGTG 59.210 50.000 17.63 9.74 35.63 3.66
600 3762 0.519175 CAATGCGTTCGCTACAGTGC 60.519 55.000 17.63 0.00 0.00 4.40
601 3763 0.948623 AATGCGTTCGCTACAGTGCA 60.949 50.000 17.63 0.00 36.69 4.57
602 3764 0.740868 ATGCGTTCGCTACAGTGCAT 60.741 50.000 17.63 0.00 38.16 3.96
603 3765 0.948623 TGCGTTCGCTACAGTGCATT 60.949 50.000 17.63 0.00 0.00 3.56
604 3766 0.247301 GCGTTCGCTACAGTGCATTC 60.247 55.000 9.99 0.00 0.00 2.67
605 3767 1.067693 CGTTCGCTACAGTGCATTCA 58.932 50.000 0.00 0.00 0.00 2.57
606 3768 1.201812 CGTTCGCTACAGTGCATTCAC 60.202 52.381 0.00 0.00 43.44 3.18
618 3780 3.814945 GTGCATTCACTACAGTCTTTGC 58.185 45.455 0.00 0.00 40.03 3.68
619 3781 2.813754 TGCATTCACTACAGTCTTTGCC 59.186 45.455 0.00 0.00 0.00 4.52
620 3782 2.162408 GCATTCACTACAGTCTTTGCCC 59.838 50.000 0.00 0.00 0.00 5.36
621 3783 2.561478 TTCACTACAGTCTTTGCCCC 57.439 50.000 0.00 0.00 0.00 5.80
622 3784 0.320374 TCACTACAGTCTTTGCCCCG 59.680 55.000 0.00 0.00 0.00 5.73
623 3785 0.320374 CACTACAGTCTTTGCCCCGA 59.680 55.000 0.00 0.00 0.00 5.14
624 3786 1.066143 CACTACAGTCTTTGCCCCGAT 60.066 52.381 0.00 0.00 0.00 4.18
625 3787 1.207329 ACTACAGTCTTTGCCCCGATC 59.793 52.381 0.00 0.00 0.00 3.69
626 3788 1.482593 CTACAGTCTTTGCCCCGATCT 59.517 52.381 0.00 0.00 0.00 2.75
627 3789 0.036010 ACAGTCTTTGCCCCGATCTG 60.036 55.000 0.00 0.00 0.00 2.90
628 3790 0.745845 CAGTCTTTGCCCCGATCTGG 60.746 60.000 0.00 0.00 37.55 3.86
629 3791 0.909610 AGTCTTTGCCCCGATCTGGA 60.910 55.000 4.46 0.00 42.00 3.86
630 3792 0.744771 GTCTTTGCCCCGATCTGGAC 60.745 60.000 4.46 0.00 42.00 4.02
631 3793 1.452108 CTTTGCCCCGATCTGGACC 60.452 63.158 4.46 0.00 42.00 4.46
632 3794 3.323758 TTTGCCCCGATCTGGACCG 62.324 63.158 4.46 0.00 42.00 4.79
637 3799 4.530857 CCGATCTGGACCGCCCAC 62.531 72.222 0.00 0.00 40.82 4.61
638 3800 3.461773 CGATCTGGACCGCCCACT 61.462 66.667 0.00 0.00 40.82 4.00
639 3801 2.990479 GATCTGGACCGCCCACTT 59.010 61.111 0.00 0.00 40.82 3.16
640 3802 1.299976 GATCTGGACCGCCCACTTT 59.700 57.895 0.00 0.00 40.82 2.66
641 3803 0.322546 GATCTGGACCGCCCACTTTT 60.323 55.000 0.00 0.00 40.82 2.27
642 3804 0.609131 ATCTGGACCGCCCACTTTTG 60.609 55.000 0.00 0.00 40.82 2.44
643 3805 1.228124 CTGGACCGCCCACTTTTGA 60.228 57.895 0.00 0.00 40.82 2.69
644 3806 0.609131 CTGGACCGCCCACTTTTGAT 60.609 55.000 0.00 0.00 40.82 2.57
645 3807 0.608035 TGGACCGCCCACTTTTGATC 60.608 55.000 0.00 0.00 40.82 2.92
646 3808 1.313091 GGACCGCCCACTTTTGATCC 61.313 60.000 0.00 0.00 34.14 3.36
647 3809 0.608035 GACCGCCCACTTTTGATCCA 60.608 55.000 0.00 0.00 0.00 3.41
648 3810 0.178975 ACCGCCCACTTTTGATCCAA 60.179 50.000 0.00 0.00 0.00 3.53
649 3811 1.185315 CCGCCCACTTTTGATCCAAT 58.815 50.000 0.00 0.00 0.00 3.16
650 3812 1.135024 CCGCCCACTTTTGATCCAATG 60.135 52.381 0.00 0.00 0.00 2.82
651 3813 1.545582 CGCCCACTTTTGATCCAATGT 59.454 47.619 0.00 0.00 0.00 2.71
652 3814 2.415893 CGCCCACTTTTGATCCAATGTC 60.416 50.000 0.00 0.00 0.00 3.06
653 3815 2.827921 GCCCACTTTTGATCCAATGTCT 59.172 45.455 0.00 0.00 0.00 3.41
654 3816 3.119352 GCCCACTTTTGATCCAATGTCTC 60.119 47.826 0.00 0.00 0.00 3.36
655 3817 4.338879 CCCACTTTTGATCCAATGTCTCT 58.661 43.478 0.00 0.00 0.00 3.10
656 3818 4.397417 CCCACTTTTGATCCAATGTCTCTC 59.603 45.833 0.00 0.00 0.00 3.20
657 3819 4.093998 CCACTTTTGATCCAATGTCTCTCG 59.906 45.833 0.00 0.00 0.00 4.04
658 3820 4.093998 CACTTTTGATCCAATGTCTCTCGG 59.906 45.833 0.00 0.00 0.00 4.63
659 3821 4.020218 ACTTTTGATCCAATGTCTCTCGGA 60.020 41.667 0.00 0.00 0.00 4.55
660 3822 4.760530 TTTGATCCAATGTCTCTCGGAT 57.239 40.909 0.00 0.00 41.00 4.18
661 3823 5.869649 TTTGATCCAATGTCTCTCGGATA 57.130 39.130 0.00 0.00 38.38 2.59
662 3824 5.869649 TTGATCCAATGTCTCTCGGATAA 57.130 39.130 0.00 0.00 38.38 1.75
663 3825 5.869649 TGATCCAATGTCTCTCGGATAAA 57.130 39.130 0.00 0.00 38.38 1.40
664 3826 5.847304 TGATCCAATGTCTCTCGGATAAAG 58.153 41.667 0.00 0.00 38.38 1.85
665 3827 4.672587 TCCAATGTCTCTCGGATAAAGG 57.327 45.455 0.00 0.00 0.00 3.11
666 3828 4.030913 TCCAATGTCTCTCGGATAAAGGT 58.969 43.478 0.00 0.00 0.00 3.50
667 3829 5.205821 TCCAATGTCTCTCGGATAAAGGTA 58.794 41.667 0.00 0.00 0.00 3.08
668 3830 5.302059 TCCAATGTCTCTCGGATAAAGGTAG 59.698 44.000 0.00 0.00 0.00 3.18
669 3831 5.302059 CCAATGTCTCTCGGATAAAGGTAGA 59.698 44.000 0.00 0.00 0.00 2.59
670 3832 6.442952 CAATGTCTCTCGGATAAAGGTAGAG 58.557 44.000 0.00 0.00 35.97 2.43
671 3833 3.884091 TGTCTCTCGGATAAAGGTAGAGC 59.116 47.826 0.00 0.00 34.89 4.09
672 3834 3.884091 GTCTCTCGGATAAAGGTAGAGCA 59.116 47.826 0.00 0.00 34.89 4.26
673 3835 3.884091 TCTCTCGGATAAAGGTAGAGCAC 59.116 47.826 0.00 0.00 34.89 4.40
674 3836 3.886505 CTCTCGGATAAAGGTAGAGCACT 59.113 47.826 0.00 0.00 0.00 4.40
675 3837 3.632604 TCTCGGATAAAGGTAGAGCACTG 59.367 47.826 0.00 0.00 0.00 3.66
676 3838 3.362706 TCGGATAAAGGTAGAGCACTGT 58.637 45.455 0.00 0.00 0.00 3.55
677 3839 4.529897 TCGGATAAAGGTAGAGCACTGTA 58.470 43.478 0.00 0.00 0.00 2.74
678 3840 4.579340 TCGGATAAAGGTAGAGCACTGTAG 59.421 45.833 0.00 0.00 0.00 2.74
679 3841 4.338682 CGGATAAAGGTAGAGCACTGTAGT 59.661 45.833 0.00 0.00 0.00 2.73
680 3842 5.163540 CGGATAAAGGTAGAGCACTGTAGTT 60.164 44.000 0.00 0.00 0.00 2.24
681 3843 6.274579 GGATAAAGGTAGAGCACTGTAGTTC 58.725 44.000 0.00 0.00 0.00 3.01
682 3844 6.127423 GGATAAAGGTAGAGCACTGTAGTTCA 60.127 42.308 0.00 0.00 0.00 3.18
683 3845 4.522722 AAGGTAGAGCACTGTAGTTCAC 57.477 45.455 0.00 0.00 0.00 3.18
684 3846 3.768878 AGGTAGAGCACTGTAGTTCACT 58.231 45.455 0.00 0.00 0.00 3.41
685 3847 3.508012 AGGTAGAGCACTGTAGTTCACTG 59.492 47.826 0.00 0.00 0.00 3.66
686 3848 2.447244 AGAGCACTGTAGTTCACTGC 57.553 50.000 0.00 0.00 36.56 4.40
687 3849 1.063806 GAGCACTGTAGTTCACTGCG 58.936 55.000 0.00 0.00 39.60 5.18
688 3850 0.389391 AGCACTGTAGTTCACTGCGT 59.611 50.000 0.00 0.00 39.60 5.24
689 3851 1.202533 AGCACTGTAGTTCACTGCGTT 60.203 47.619 0.00 0.00 39.60 4.84
690 3852 1.070577 GCACTGTAGTTCACTGCGTTG 60.071 52.381 0.00 0.00 0.00 4.10
691 3853 1.070577 CACTGTAGTTCACTGCGTTGC 60.071 52.381 0.00 0.00 0.00 4.17
692 3854 1.217001 CTGTAGTTCACTGCGTTGCA 58.783 50.000 0.00 0.00 36.92 4.08
693 3855 0.934496 TGTAGTTCACTGCGTTGCAC 59.066 50.000 0.00 0.00 33.79 4.57
694 3856 0.934496 GTAGTTCACTGCGTTGCACA 59.066 50.000 0.00 0.00 33.79 4.57
695 3857 1.531149 GTAGTTCACTGCGTTGCACAT 59.469 47.619 0.00 0.00 33.79 3.21
696 3858 0.308684 AGTTCACTGCGTTGCACATG 59.691 50.000 0.00 0.00 33.79 3.21
697 3859 0.661187 GTTCACTGCGTTGCACATGG 60.661 55.000 0.00 0.00 33.79 3.66
698 3860 2.405061 TTCACTGCGTTGCACATGGC 62.405 55.000 0.00 0.00 45.13 4.40
708 3870 3.861341 GCACATGGCAAGGTAGAGA 57.139 52.632 0.00 0.00 43.97 3.10
709 3871 2.113860 GCACATGGCAAGGTAGAGAA 57.886 50.000 0.00 0.00 43.97 2.87
710 3872 2.648059 GCACATGGCAAGGTAGAGAAT 58.352 47.619 0.00 0.00 43.97 2.40
711 3873 2.615912 GCACATGGCAAGGTAGAGAATC 59.384 50.000 0.00 0.00 43.97 2.52
712 3874 3.209410 CACATGGCAAGGTAGAGAATCC 58.791 50.000 0.00 0.00 33.66 3.01
713 3875 2.158900 ACATGGCAAGGTAGAGAATCCG 60.159 50.000 0.00 0.00 33.66 4.18
714 3876 0.178068 TGGCAAGGTAGAGAATCCGC 59.822 55.000 0.00 0.00 33.66 5.54
715 3877 0.876342 GGCAAGGTAGAGAATCCGCG 60.876 60.000 0.00 0.00 33.66 6.46
716 3878 1.491505 GCAAGGTAGAGAATCCGCGC 61.492 60.000 0.00 0.00 33.66 6.86
717 3879 0.876342 CAAGGTAGAGAATCCGCGCC 60.876 60.000 0.00 0.00 33.66 6.53
718 3880 2.029221 GGTAGAGAATCCGCGCCC 59.971 66.667 0.00 0.00 33.66 6.13
719 3881 2.792947 GGTAGAGAATCCGCGCCCA 61.793 63.158 0.00 0.00 33.66 5.36
720 3882 1.367840 GTAGAGAATCCGCGCCCAT 59.632 57.895 0.00 0.00 33.66 4.00
721 3883 0.249911 GTAGAGAATCCGCGCCCATT 60.250 55.000 0.00 0.00 33.66 3.16
722 3884 0.033504 TAGAGAATCCGCGCCCATTC 59.966 55.000 15.15 15.15 33.66 2.67
723 3885 1.523711 GAGAATCCGCGCCCATTCA 60.524 57.895 21.80 0.00 32.28 2.57
775 3937 7.669722 TCCAACAAGAAGCTAAAATCTAACCAT 59.330 33.333 0.00 0.00 0.00 3.55
1613 4893 5.871465 TTTCCTTTTGTTGCCAAAGAAAC 57.129 34.783 0.00 0.00 41.37 2.78
1614 4894 3.867857 TCCTTTTGTTGCCAAAGAAACC 58.132 40.909 0.00 0.00 41.37 3.27
1617 4897 3.922171 TTTGTTGCCAAAGAAACCCAT 57.078 38.095 0.00 0.00 35.67 4.00
1621 4909 3.964031 TGTTGCCAAAGAAACCCATTAGT 59.036 39.130 0.00 0.00 0.00 2.24
1634 4922 3.756434 ACCCATTAGTTTCACAATGACCG 59.244 43.478 0.00 0.00 34.69 4.79
1639 4927 3.194005 AGTTTCACAATGACCGTGAGT 57.806 42.857 0.00 0.00 43.85 3.41
1641 4929 3.945285 AGTTTCACAATGACCGTGAGTTT 59.055 39.130 0.00 0.00 43.85 2.66
1642 4930 5.120399 AGTTTCACAATGACCGTGAGTTTA 58.880 37.500 0.00 0.00 43.85 2.01
1643 4931 5.587043 AGTTTCACAATGACCGTGAGTTTAA 59.413 36.000 0.00 0.00 43.85 1.52
1644 4932 5.666969 TTCACAATGACCGTGAGTTTAAG 57.333 39.130 0.00 0.00 43.85 1.85
1645 4933 4.699637 TCACAATGACCGTGAGTTTAAGT 58.300 39.130 0.00 0.00 38.45 2.24
1646 4934 5.845103 TCACAATGACCGTGAGTTTAAGTA 58.155 37.500 0.00 0.00 38.45 2.24
1653 4941 5.011329 TGACCGTGAGTTTAAGTATTCACCT 59.989 40.000 0.00 0.00 37.29 4.00
1654 4942 5.235516 ACCGTGAGTTTAAGTATTCACCTG 58.764 41.667 0.00 0.00 37.29 4.00
1675 4970 9.150348 CACCTGTTTTTCATTTTTCACTAGTTT 57.850 29.630 0.00 0.00 0.00 2.66
1676 4971 9.719355 ACCTGTTTTTCATTTTTCACTAGTTTT 57.281 25.926 0.00 0.00 0.00 2.43
1703 4998 8.822652 TGTTCACTTAACTTAGTTTAGGTAGC 57.177 34.615 14.37 5.76 38.99 3.58
1704 4999 8.645110 TGTTCACTTAACTTAGTTTAGGTAGCT 58.355 33.333 14.37 0.00 38.99 3.32
1714 5009 9.032624 ACTTAGTTTAGGTAGCTTATTCACTGA 57.967 33.333 0.00 0.00 0.00 3.41
1721 5016 5.600484 AGGTAGCTTATTCACTGACTGCTAT 59.400 40.000 0.00 0.00 34.70 2.97
1723 5018 6.763610 GGTAGCTTATTCACTGACTGCTATTT 59.236 38.462 0.00 0.00 34.70 1.40
1724 5019 6.674694 AGCTTATTCACTGACTGCTATTTG 57.325 37.500 0.00 0.00 0.00 2.32
1767 5073 5.008331 AGACCAGAGTTATCGACACTGTTA 58.992 41.667 3.82 0.00 43.06 2.41
1768 5074 5.652891 AGACCAGAGTTATCGACACTGTTAT 59.347 40.000 3.82 0.00 43.06 1.89
1783 5089 9.445786 CGACACTGTTATTTTAAACTCATTTGT 57.554 29.630 0.00 0.00 0.00 2.83
1790 5096 9.677567 GTTATTTTAAACTCATTTGTCTGAGCA 57.322 29.630 1.14 0.00 45.37 4.26
1794 5100 9.844790 TTTTAAACTCATTTGTCTGAGCATATG 57.155 29.630 0.00 0.00 45.37 1.78
1795 5101 8.565896 TTAAACTCATTTGTCTGAGCATATGT 57.434 30.769 4.29 0.00 45.37 2.29
1796 5102 6.432607 AACTCATTTGTCTGAGCATATGTG 57.567 37.500 4.29 7.17 45.37 3.21
1797 5103 5.737860 ACTCATTTGTCTGAGCATATGTGA 58.262 37.500 4.29 0.00 45.37 3.58
1798 5104 6.354938 ACTCATTTGTCTGAGCATATGTGAT 58.645 36.000 4.29 0.00 45.37 3.06
1799 5105 6.827251 ACTCATTTGTCTGAGCATATGTGATT 59.173 34.615 4.29 0.00 45.37 2.57
1803 5109 9.961265 CATTTGTCTGAGCATATGTGATTATTT 57.039 29.630 4.29 0.00 0.00 1.40
1806 5112 8.374327 TGTCTGAGCATATGTGATTATTTGAG 57.626 34.615 4.29 0.00 0.00 3.02
1809 5115 7.658982 TCTGAGCATATGTGATTATTTGAGACC 59.341 37.037 4.29 0.00 0.00 3.85
1831 5137 3.492313 GCCTTCTGCGATTGTTGTAAAG 58.508 45.455 0.00 0.00 0.00 1.85
1840 5146 4.491441 GCGATTGTTGTAAAGCGTAGTACC 60.491 45.833 0.00 0.00 40.86 3.34
1854 5160 6.666417 AGCGTAGTACCGAATACTTATCTTG 58.334 40.000 4.87 0.00 41.71 3.02
1859 5165 7.040473 AGTACCGAATACTTATCTTGACTGG 57.960 40.000 0.00 0.00 41.71 4.00
1862 5168 5.421056 ACCGAATACTTATCTTGACTGGTCA 59.579 40.000 0.00 0.00 37.91 4.02
1876 5182 2.040412 ACTGGTCATGTTTCTCTTCCCC 59.960 50.000 0.00 0.00 0.00 4.81
1880 5186 1.089920 CATGTTTCTCTTCCCCTGCG 58.910 55.000 0.00 0.00 0.00 5.18
1886 5192 1.275666 TCTCTTCCCCTGCGATTTGA 58.724 50.000 0.00 0.00 0.00 2.69
1887 5193 1.208052 TCTCTTCCCCTGCGATTTGAG 59.792 52.381 0.00 0.00 0.00 3.02
1888 5194 0.984230 TCTTCCCCTGCGATTTGAGT 59.016 50.000 0.00 0.00 0.00 3.41
1889 5195 1.351017 TCTTCCCCTGCGATTTGAGTT 59.649 47.619 0.00 0.00 0.00 3.01
1890 5196 1.470098 CTTCCCCTGCGATTTGAGTTG 59.530 52.381 0.00 0.00 0.00 3.16
1891 5197 0.960364 TCCCCTGCGATTTGAGTTGC 60.960 55.000 0.00 0.00 0.00 4.17
1897 5203 1.337354 TGCGATTTGAGTTGCGGTAGA 60.337 47.619 0.00 0.00 0.00 2.59
1899 5205 2.351726 GCGATTTGAGTTGCGGTAGATT 59.648 45.455 0.00 0.00 0.00 2.40
1915 5228 6.438763 CGGTAGATTTTTGCTTCTCTGTTTT 58.561 36.000 0.00 0.00 0.00 2.43
1916 5229 7.581476 CGGTAGATTTTTGCTTCTCTGTTTTA 58.419 34.615 0.00 0.00 0.00 1.52
1917 5230 7.534239 CGGTAGATTTTTGCTTCTCTGTTTTAC 59.466 37.037 0.00 0.00 0.00 2.01
1918 5231 8.349983 GGTAGATTTTTGCTTCTCTGTTTTACA 58.650 33.333 0.00 0.00 0.00 2.41
1922 5235 9.468532 GATTTTTGCTTCTCTGTTTTACATCTT 57.531 29.630 0.00 0.00 0.00 2.40
1923 5236 8.633075 TTTTTGCTTCTCTGTTTTACATCTTG 57.367 30.769 0.00 0.00 0.00 3.02
1924 5237 5.362556 TGCTTCTCTGTTTTACATCTTGC 57.637 39.130 0.00 0.00 0.00 4.01
1925 5238 4.821260 TGCTTCTCTGTTTTACATCTTGCA 59.179 37.500 0.00 0.00 0.00 4.08
1926 5239 5.049198 TGCTTCTCTGTTTTACATCTTGCAG 60.049 40.000 0.00 0.00 0.00 4.41
1927 5240 5.362556 TTCTCTGTTTTACATCTTGCAGC 57.637 39.130 0.00 0.00 0.00 5.25
1928 5241 3.433274 TCTCTGTTTTACATCTTGCAGCG 59.567 43.478 0.00 0.00 0.00 5.18
1929 5242 3.138304 TCTGTTTTACATCTTGCAGCGT 58.862 40.909 0.00 0.00 0.00 5.07
1930 5243 4.311606 TCTGTTTTACATCTTGCAGCGTA 58.688 39.130 0.00 0.00 0.00 4.42
1944 5257 2.245096 CAGCGTAATTTGCAGTTCAGC 58.755 47.619 5.33 0.00 33.85 4.26
2033 5347 9.692749 TCCGATGTTATATTAGATGTCAACTTC 57.307 33.333 0.00 0.00 0.00 3.01
2085 5401 4.677673 AGCTGGAAATGCTTCAGTTTTT 57.322 36.364 0.00 0.00 37.52 1.94
2118 5435 7.918076 TCAGAACCTATAGAGTGGACATTTTT 58.082 34.615 0.00 0.00 0.00 1.94
2122 5439 9.274206 GAACCTATAGAGTGGACATTTTTATCC 57.726 37.037 0.00 0.00 35.37 2.59
2131 5448 3.564225 GGACATTTTTATCCGCTGTAGGG 59.436 47.826 0.00 0.00 0.00 3.53
2148 5468 6.041751 GCTGTAGGGTCTGTATTATTACCACT 59.958 42.308 0.00 0.00 33.46 4.00
2238 5559 3.510388 TCACCTCTGCAGATTCTTACG 57.490 47.619 18.63 3.16 0.00 3.18
2285 5606 2.287769 GGAGCAGAGAGAAGGAAATGC 58.712 52.381 0.00 0.00 0.00 3.56
2292 5613 4.630940 CAGAGAGAAGGAAATGCTGAAGAC 59.369 45.833 0.00 0.00 0.00 3.01
2409 5730 4.262635 CCCACTACTTCTTCTGAAAGCTCA 60.263 45.833 0.00 0.00 32.18 4.26
2475 5797 3.330267 CCTGACCAAGCTCTTCAAGTAC 58.670 50.000 0.00 0.00 0.00 2.73
2476 5798 3.244215 CCTGACCAAGCTCTTCAAGTACA 60.244 47.826 0.00 0.00 0.00 2.90
2531 5853 5.351210 GCTCTTGCAATGCATAGGCACAT 62.351 47.826 21.54 0.00 45.98 3.21
2597 5919 8.962884 AAACAAAGATGGCAAGTAAAAAGAAT 57.037 26.923 0.00 0.00 0.00 2.40
2804 6852 4.027295 CACGACGATGAGAACTTATCAAGC 60.027 45.833 0.00 0.00 0.00 4.01
2829 6877 9.349145 GCGTTAGAAATGTTATAATTGGTGTTT 57.651 29.630 0.00 0.00 0.00 2.83
2881 6933 1.691976 TGTCCACCTCATCGACAAAGT 59.308 47.619 0.00 0.00 33.72 2.66
2891 6943 0.321564 TCGACAAAGTGCTCCATGGG 60.322 55.000 13.02 3.69 0.00 4.00
2908 6960 0.729690 GGGATCTCAACGCTTGAAGC 59.270 55.000 7.20 7.20 39.58 3.86
2913 6965 0.795085 CTCAACGCTTGAAGCCTGAG 59.205 55.000 21.97 21.97 39.65 3.35
2916 6968 0.603975 AACGCTTGAAGCCTGAGGAC 60.604 55.000 12.13 0.00 38.18 3.85
2933 6985 4.125703 GAGGACATCTGAAGCGAATTCAT 58.874 43.478 6.22 0.00 46.71 2.57
2986 7041 3.099905 CAGTATCTGACCTGACCCTCAA 58.900 50.000 1.01 0.00 32.44 3.02
3038 7094 4.130118 GTTCTGTATGCTAACCATCCCTG 58.870 47.826 0.00 0.00 35.34 4.45
3052 7108 2.038863 TCCCTGTTATGTCCACCTGT 57.961 50.000 0.00 0.00 0.00 4.00
3060 7116 2.260844 ATGTCCACCTGTTGTGTCTG 57.739 50.000 0.00 0.00 43.85 3.51
3090 7146 1.399440 CTGATTGAACATGGAGGCACG 59.601 52.381 0.00 0.00 0.00 5.34
3189 7245 6.128007 GGGTAGGTAACATTGACTGTTCATTG 60.128 42.308 0.00 0.00 44.99 2.82
3190 7246 6.430000 GGTAGGTAACATTGACTGTTCATTGT 59.570 38.462 0.00 0.00 44.99 2.71
3192 7248 5.473504 AGGTAACATTGACTGTTCATTGTCC 59.526 40.000 0.00 2.51 44.99 4.02
3194 7250 5.443185 AACATTGACTGTTCATTGTCCTG 57.557 39.130 3.39 0.00 44.99 3.86
3196 7252 5.620206 ACATTGACTGTTCATTGTCCTGTA 58.380 37.500 0.00 0.00 40.68 2.74
3197 7253 6.061441 ACATTGACTGTTCATTGTCCTGTAA 58.939 36.000 0.00 0.00 40.68 2.41
3198 7254 6.545666 ACATTGACTGTTCATTGTCCTGTAAA 59.454 34.615 0.00 0.00 40.68 2.01
3199 7255 7.231317 ACATTGACTGTTCATTGTCCTGTAAAT 59.769 33.333 0.00 0.00 40.68 1.40
3200 7256 6.801539 TGACTGTTCATTGTCCTGTAAATC 57.198 37.500 0.00 0.00 32.67 2.17
3201 7257 6.533730 TGACTGTTCATTGTCCTGTAAATCT 58.466 36.000 0.00 0.00 32.67 2.40
3202 7258 6.998074 TGACTGTTCATTGTCCTGTAAATCTT 59.002 34.615 0.00 0.00 32.67 2.40
3203 7259 7.041167 TGACTGTTCATTGTCCTGTAAATCTTG 60.041 37.037 0.00 0.00 32.67 3.02
3204 7260 6.772716 ACTGTTCATTGTCCTGTAAATCTTGT 59.227 34.615 0.00 0.00 0.00 3.16
3206 7262 5.627499 TCATTGTCCTGTAAATCTTGTGC 57.373 39.130 0.00 0.00 0.00 4.57
3210 7266 3.585289 TGTCCTGTAAATCTTGTGCCCTA 59.415 43.478 0.00 0.00 0.00 3.53
3228 7350 4.082026 GCCCTATTCTTCAAAATGCAGTGT 60.082 41.667 0.00 0.00 0.00 3.55
3237 7359 1.620822 AAATGCAGTGTGGGGTCTTC 58.379 50.000 0.00 0.00 0.00 2.87
3246 7368 1.266178 GTGGGGTCTTCAATTTGGGG 58.734 55.000 0.00 0.00 0.00 4.96
3255 7377 0.546507 TCAATTTGGGGGAAAGGGGC 60.547 55.000 0.00 0.00 0.00 5.80
3297 7419 6.841119 TCAATGGACTCGTTATGATTTGTTG 58.159 36.000 0.00 0.00 0.00 3.33
3302 7424 6.882140 TGGACTCGTTATGATTTGTTGGTTAT 59.118 34.615 0.00 0.00 0.00 1.89
3303 7425 7.065324 TGGACTCGTTATGATTTGTTGGTTATC 59.935 37.037 0.00 0.00 0.00 1.75
3313 7435 6.326064 TGATTTGTTGGTTATCATAATGGGGG 59.674 38.462 0.00 0.00 0.00 5.40
3317 7439 4.447138 TGGTTATCATAATGGGGGTGAC 57.553 45.455 0.00 0.00 0.00 3.67
3336 7458 1.583054 CCATAAGGTAGGCGCTTGAC 58.417 55.000 7.64 2.52 0.00 3.18
3374 7496 1.165270 CACTTTGTTCCCGTCCATCC 58.835 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.016024 ACCATTCAACATACACCATCATATGC 60.016 38.462 0.00 0.00 32.92 3.14
74 75 3.559238 ATGGCAATCACGACTCAAAAC 57.441 42.857 0.00 0.00 0.00 2.43
84 85 5.289595 TCGTATAGACTCAATGGCAATCAC 58.710 41.667 0.00 0.00 0.00 3.06
87 88 5.057149 GGTTCGTATAGACTCAATGGCAAT 58.943 41.667 0.00 0.00 0.00 3.56
105 106 1.575244 ATGAGATGCACATCGGTTCG 58.425 50.000 5.04 0.00 42.48 3.95
122 123 7.442364 ACGAGATCCTAATCCAAACACATTATG 59.558 37.037 0.00 0.00 31.78 1.90
124 125 6.884832 ACGAGATCCTAATCCAAACACATTA 58.115 36.000 0.00 0.00 31.78 1.90
144 145 8.598075 ACCAGCGTAATTAAAATAAGTAACGAG 58.402 33.333 0.00 0.00 0.00 4.18
149 150 8.774890 TGTGACCAGCGTAATTAAAATAAGTA 57.225 30.769 0.00 0.00 0.00 2.24
155 156 8.951787 ACTATATGTGACCAGCGTAATTAAAA 57.048 30.769 0.00 0.00 0.00 1.52
197 198 1.608590 GCGCATACCATAGCAACCAAT 59.391 47.619 0.30 0.00 0.00 3.16
207 208 0.750850 ACCGAGTAAGCGCATACCAT 59.249 50.000 18.42 1.62 0.00 3.55
268 269 7.881775 AGGGTTGTATCATTTTCAGATTACC 57.118 36.000 0.00 0.00 0.00 2.85
298 299 3.643792 GTGCAGATGTAGGGTAAGGAGAT 59.356 47.826 0.00 0.00 0.00 2.75
302 303 2.766263 TCTGTGCAGATGTAGGGTAAGG 59.234 50.000 0.00 0.00 31.41 2.69
322 324 7.189512 CCTTCCATGATTAAACTTTGATCGTC 58.810 38.462 0.00 0.00 0.00 4.20
394 3556 2.098934 TGAACAAATGTGTGCCACTGTC 59.901 45.455 0.00 0.00 38.27 3.51
416 3578 2.094182 GGTAGAGAATTCACAGCCGTCA 60.094 50.000 8.44 0.00 0.00 4.35
417 3579 2.541556 GGTAGAGAATTCACAGCCGTC 58.458 52.381 8.44 0.00 0.00 4.79
418 3580 1.135083 CGGTAGAGAATTCACAGCCGT 60.135 52.381 20.94 0.00 34.06 5.68
419 3581 1.135083 ACGGTAGAGAATTCACAGCCG 60.135 52.381 24.62 24.62 43.05 5.52
420 3582 2.271800 CACGGTAGAGAATTCACAGCC 58.728 52.381 8.44 6.91 0.00 4.85
421 3583 1.661112 GCACGGTAGAGAATTCACAGC 59.339 52.381 8.44 0.98 0.00 4.40
422 3584 2.271800 GGCACGGTAGAGAATTCACAG 58.728 52.381 8.44 0.73 0.00 3.66
423 3585 1.621317 TGGCACGGTAGAGAATTCACA 59.379 47.619 8.44 0.00 0.00 3.58
424 3586 2.380084 TGGCACGGTAGAGAATTCAC 57.620 50.000 8.44 0.74 0.00 3.18
425 3587 2.419990 CCATGGCACGGTAGAGAATTCA 60.420 50.000 8.44 0.00 0.00 2.57
426 3588 2.213499 CCATGGCACGGTAGAGAATTC 58.787 52.381 0.00 0.00 0.00 2.17
427 3589 1.134098 CCCATGGCACGGTAGAGAATT 60.134 52.381 6.09 0.00 0.00 2.17
428 3590 0.469917 CCCATGGCACGGTAGAGAAT 59.530 55.000 6.09 0.00 0.00 2.40
429 3591 1.904771 CCCATGGCACGGTAGAGAA 59.095 57.895 6.09 0.00 0.00 2.87
430 3592 3.628989 CCCATGGCACGGTAGAGA 58.371 61.111 6.09 0.00 0.00 3.10
441 3603 1.453379 CTCTCTGCCTTGCCCATGG 60.453 63.158 4.14 4.14 0.00 3.66
442 3604 2.119655 GCTCTCTGCCTTGCCCATG 61.120 63.158 0.00 0.00 35.15 3.66
443 3605 0.984961 TAGCTCTCTGCCTTGCCCAT 60.985 55.000 0.00 0.00 44.23 4.00
444 3606 1.613332 TAGCTCTCTGCCTTGCCCA 60.613 57.895 0.00 0.00 44.23 5.36
445 3607 1.153269 GTAGCTCTCTGCCTTGCCC 60.153 63.158 0.00 0.00 44.23 5.36
446 3608 0.461693 CTGTAGCTCTCTGCCTTGCC 60.462 60.000 0.00 0.00 44.23 4.52
447 3609 0.248843 ACTGTAGCTCTCTGCCTTGC 59.751 55.000 0.00 0.00 44.23 4.01
448 3610 2.006056 GCACTGTAGCTCTCTGCCTTG 61.006 57.143 0.00 0.00 44.23 3.61
449 3611 0.248843 GCACTGTAGCTCTCTGCCTT 59.751 55.000 0.00 0.00 44.23 4.35
450 3612 1.612395 GGCACTGTAGCTCTCTGCCT 61.612 60.000 14.43 0.00 43.52 4.75
451 3613 1.153469 GGCACTGTAGCTCTCTGCC 60.153 63.158 8.42 8.42 44.23 4.85
452 3614 0.179113 GAGGCACTGTAGCTCTCTGC 60.179 60.000 0.00 0.00 41.55 4.26
453 3615 1.134753 CAGAGGCACTGTAGCTCTCTG 59.865 57.143 20.96 20.96 44.96 3.35
454 3616 1.473258 CAGAGGCACTGTAGCTCTCT 58.527 55.000 3.56 12.56 41.55 3.10
465 3627 0.037447 AAGAGGAAAGGCAGAGGCAC 59.963 55.000 0.00 0.00 43.71 5.01
466 3628 0.326264 GAAGAGGAAAGGCAGAGGCA 59.674 55.000 0.00 0.00 43.71 4.75
467 3629 0.617935 AGAAGAGGAAAGGCAGAGGC 59.382 55.000 0.00 0.00 40.13 4.70
468 3630 2.355615 GGAAGAAGAGGAAAGGCAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
469 3631 2.676463 CGGAAGAAGAGGAAAGGCAGAG 60.676 54.545 0.00 0.00 0.00 3.35
470 3632 1.276421 CGGAAGAAGAGGAAAGGCAGA 59.724 52.381 0.00 0.00 0.00 4.26
471 3633 1.002544 ACGGAAGAAGAGGAAAGGCAG 59.997 52.381 0.00 0.00 0.00 4.85
472 3634 1.056660 ACGGAAGAAGAGGAAAGGCA 58.943 50.000 0.00 0.00 0.00 4.75
473 3635 2.186532 AACGGAAGAAGAGGAAAGGC 57.813 50.000 0.00 0.00 0.00 4.35
474 3636 3.477530 ACAAACGGAAGAAGAGGAAAGG 58.522 45.455 0.00 0.00 0.00 3.11
475 3637 4.261197 CCAACAAACGGAAGAAGAGGAAAG 60.261 45.833 0.00 0.00 0.00 2.62
476 3638 3.630312 CCAACAAACGGAAGAAGAGGAAA 59.370 43.478 0.00 0.00 0.00 3.13
477 3639 3.118186 TCCAACAAACGGAAGAAGAGGAA 60.118 43.478 0.00 0.00 0.00 3.36
478 3640 2.436542 TCCAACAAACGGAAGAAGAGGA 59.563 45.455 0.00 0.00 0.00 3.71
479 3641 2.846193 TCCAACAAACGGAAGAAGAGG 58.154 47.619 0.00 0.00 0.00 3.69
480 3642 3.123621 CGATCCAACAAACGGAAGAAGAG 59.876 47.826 0.00 0.00 35.77 2.85
481 3643 3.064207 CGATCCAACAAACGGAAGAAGA 58.936 45.455 0.00 0.00 35.77 2.87
482 3644 3.064207 TCGATCCAACAAACGGAAGAAG 58.936 45.455 0.00 0.00 35.77 2.85
483 3645 3.064207 CTCGATCCAACAAACGGAAGAA 58.936 45.455 0.00 0.00 35.77 2.52
484 3646 2.297880 TCTCGATCCAACAAACGGAAGA 59.702 45.455 0.00 0.00 35.77 2.87
485 3647 2.683968 TCTCGATCCAACAAACGGAAG 58.316 47.619 0.00 0.00 35.77 3.46
486 3648 2.803956 GTTCTCGATCCAACAAACGGAA 59.196 45.455 0.00 0.00 35.77 4.30
487 3649 2.409975 GTTCTCGATCCAACAAACGGA 58.590 47.619 0.00 0.00 36.84 4.69
488 3650 1.463444 GGTTCTCGATCCAACAAACGG 59.537 52.381 0.00 0.00 0.00 4.44
489 3651 2.139917 TGGTTCTCGATCCAACAAACG 58.860 47.619 2.36 0.00 0.00 3.60
495 3657 0.672401 GCGGTTGGTTCTCGATCCAA 60.672 55.000 11.17 11.17 40.77 3.53
496 3658 1.079405 GCGGTTGGTTCTCGATCCA 60.079 57.895 0.00 0.00 0.00 3.41
497 3659 0.806492 GAGCGGTTGGTTCTCGATCC 60.806 60.000 0.00 0.00 33.89 3.36
498 3660 0.108804 TGAGCGGTTGGTTCTCGATC 60.109 55.000 0.00 0.00 39.38 3.69
499 3661 0.108615 CTGAGCGGTTGGTTCTCGAT 60.109 55.000 0.00 0.00 0.00 3.59
500 3662 1.176619 TCTGAGCGGTTGGTTCTCGA 61.177 55.000 0.00 0.00 0.00 4.04
501 3663 0.108615 ATCTGAGCGGTTGGTTCTCG 60.109 55.000 0.00 0.00 0.00 4.04
502 3664 1.205893 AGATCTGAGCGGTTGGTTCTC 59.794 52.381 0.00 0.00 0.00 2.87
503 3665 1.066573 CAGATCTGAGCGGTTGGTTCT 60.067 52.381 18.34 0.00 0.00 3.01
504 3666 1.066858 TCAGATCTGAGCGGTTGGTTC 60.067 52.381 21.67 0.00 34.14 3.62
505 3667 0.976641 TCAGATCTGAGCGGTTGGTT 59.023 50.000 21.67 0.00 34.14 3.67
506 3668 1.134580 CATCAGATCTGAGCGGTTGGT 60.135 52.381 28.26 8.36 43.61 3.67
507 3669 1.579698 CATCAGATCTGAGCGGTTGG 58.420 55.000 28.26 9.58 43.61 3.77
508 3670 0.935898 GCATCAGATCTGAGCGGTTG 59.064 55.000 28.26 21.61 43.61 3.77
509 3671 0.538584 TGCATCAGATCTGAGCGGTT 59.461 50.000 28.26 10.55 43.61 4.44
510 3672 0.538584 TTGCATCAGATCTGAGCGGT 59.461 50.000 28.26 10.92 43.61 5.68
511 3673 0.935898 GTTGCATCAGATCTGAGCGG 59.064 55.000 28.26 20.60 43.61 5.52
512 3674 1.593469 CTGTTGCATCAGATCTGAGCG 59.407 52.381 28.26 22.12 43.61 5.03
513 3675 2.630158 ACTGTTGCATCAGATCTGAGC 58.370 47.619 28.26 27.45 43.61 4.26
514 3676 4.752146 TGTACTGTTGCATCAGATCTGAG 58.248 43.478 28.26 20.52 43.61 3.35
515 3677 4.221482 ACTGTACTGTTGCATCAGATCTGA 59.779 41.667 27.03 27.03 44.59 3.27
516 3678 4.502016 ACTGTACTGTTGCATCAGATCTG 58.498 43.478 27.42 17.07 38.63 2.90
517 3679 4.676459 CGACTGTACTGTTGCATCAGATCT 60.676 45.833 27.42 10.88 38.63 2.75
518 3680 3.549471 CGACTGTACTGTTGCATCAGATC 59.451 47.826 27.42 19.17 38.63 2.75
519 3681 3.515630 CGACTGTACTGTTGCATCAGAT 58.484 45.455 27.42 15.52 38.63 2.90
520 3682 2.926586 GCGACTGTACTGTTGCATCAGA 60.927 50.000 30.02 11.19 44.46 3.27
521 3683 1.391485 GCGACTGTACTGTTGCATCAG 59.609 52.381 30.02 20.74 44.46 2.90
522 3684 1.428448 GCGACTGTACTGTTGCATCA 58.572 50.000 30.02 0.00 44.46 3.07
523 3685 0.721718 GGCGACTGTACTGTTGCATC 59.278 55.000 33.32 20.30 46.28 3.91
524 3686 0.034756 TGGCGACTGTACTGTTGCAT 59.965 50.000 33.32 3.84 46.28 3.96
525 3687 0.878523 GTGGCGACTGTACTGTTGCA 60.879 55.000 33.32 22.02 46.28 4.08
526 3688 0.878523 TGTGGCGACTGTACTGTTGC 60.879 55.000 28.18 28.18 44.37 4.17
527 3689 1.139989 CTGTGGCGACTGTACTGTTG 58.860 55.000 14.22 14.22 0.00 3.33
528 3690 0.750850 ACTGTGGCGACTGTACTGTT 59.249 50.000 9.60 0.00 32.84 3.16
529 3691 1.268899 GTACTGTGGCGACTGTACTGT 59.731 52.381 29.14 4.92 46.39 3.55
530 3692 1.978542 GTACTGTGGCGACTGTACTG 58.021 55.000 29.14 0.00 46.39 2.74
533 3695 0.800631 CGAGTACTGTGGCGACTGTA 59.199 55.000 13.30 13.30 35.92 2.74
534 3696 0.887836 TCGAGTACTGTGGCGACTGT 60.888 55.000 15.21 15.21 37.89 3.55
535 3697 0.240145 TTCGAGTACTGTGGCGACTG 59.760 55.000 0.00 4.20 31.91 3.51
536 3698 0.956633 TTTCGAGTACTGTGGCGACT 59.043 50.000 0.00 0.00 31.91 4.18
537 3699 1.058404 GTTTCGAGTACTGTGGCGAC 58.942 55.000 0.00 0.00 31.91 5.19
538 3700 0.669619 TGTTTCGAGTACTGTGGCGA 59.330 50.000 0.00 0.00 0.00 5.54
539 3701 1.060713 CTGTTTCGAGTACTGTGGCG 58.939 55.000 0.00 0.00 0.00 5.69
540 3702 1.792949 CACTGTTTCGAGTACTGTGGC 59.207 52.381 21.50 0.00 39.99 5.01
541 3703 3.050619 GTCACTGTTTCGAGTACTGTGG 58.949 50.000 25.24 14.85 42.33 4.17
542 3704 3.702330 TGTCACTGTTTCGAGTACTGTG 58.298 45.455 22.45 22.45 42.98 3.66
543 3705 4.037565 TCATGTCACTGTTTCGAGTACTGT 59.962 41.667 0.00 6.50 0.00 3.55
544 3706 4.546570 TCATGTCACTGTTTCGAGTACTG 58.453 43.478 0.00 0.00 0.00 2.74
545 3707 4.848562 TCATGTCACTGTTTCGAGTACT 57.151 40.909 0.00 0.00 0.00 2.73
546 3708 4.743151 TGTTCATGTCACTGTTTCGAGTAC 59.257 41.667 0.00 0.00 0.00 2.73
547 3709 4.939271 TGTTCATGTCACTGTTTCGAGTA 58.061 39.130 0.00 0.00 0.00 2.59
548 3710 3.792401 TGTTCATGTCACTGTTTCGAGT 58.208 40.909 0.00 0.00 0.00 4.18
549 3711 4.448732 TCATGTTCATGTCACTGTTTCGAG 59.551 41.667 11.73 0.00 0.00 4.04
550 3712 4.376146 TCATGTTCATGTCACTGTTTCGA 58.624 39.130 11.73 0.00 0.00 3.71
551 3713 4.730600 TCATGTTCATGTCACTGTTTCG 57.269 40.909 11.73 0.00 0.00 3.46
552 3714 4.905866 CGTTCATGTTCATGTCACTGTTTC 59.094 41.667 11.73 0.00 0.00 2.78
553 3715 4.335315 ACGTTCATGTTCATGTCACTGTTT 59.665 37.500 11.73 0.00 0.00 2.83
554 3716 3.876914 ACGTTCATGTTCATGTCACTGTT 59.123 39.130 11.73 0.00 0.00 3.16
555 3717 3.466836 ACGTTCATGTTCATGTCACTGT 58.533 40.909 11.73 9.48 0.00 3.55
556 3718 4.472691 AACGTTCATGTTCATGTCACTG 57.527 40.909 11.73 9.04 0.00 3.66
557 3719 6.037720 TGTTTAACGTTCATGTTCATGTCACT 59.962 34.615 2.82 1.00 33.32 3.41
558 3720 6.195868 TGTTTAACGTTCATGTTCATGTCAC 58.804 36.000 2.82 9.25 33.32 3.67
559 3721 6.364945 TGTTTAACGTTCATGTTCATGTCA 57.635 33.333 2.82 0.00 33.32 3.58
560 3722 7.617122 GCATTGTTTAACGTTCATGTTCATGTC 60.617 37.037 2.82 6.66 33.32 3.06
561 3723 6.143758 GCATTGTTTAACGTTCATGTTCATGT 59.856 34.615 2.82 0.00 33.32 3.21
562 3724 6.515882 GCATTGTTTAACGTTCATGTTCATG 58.484 36.000 2.82 6.46 33.32 3.07
563 3725 5.341993 CGCATTGTTTAACGTTCATGTTCAT 59.658 36.000 2.82 0.00 33.32 2.57
564 3726 4.672862 CGCATTGTTTAACGTTCATGTTCA 59.327 37.500 2.82 0.00 33.32 3.18
565 3727 4.673311 ACGCATTGTTTAACGTTCATGTTC 59.327 37.500 2.82 0.00 34.62 3.18
566 3728 4.602995 ACGCATTGTTTAACGTTCATGTT 58.397 34.783 2.82 0.00 34.62 2.71
567 3729 4.217754 ACGCATTGTTTAACGTTCATGT 57.782 36.364 2.82 0.00 34.62 3.21
573 3735 1.262151 AGCGAACGCATTGTTTAACGT 59.738 42.857 20.66 0.00 42.09 3.99
574 3736 1.945207 AGCGAACGCATTGTTTAACG 58.055 45.000 20.66 0.00 42.09 3.18
575 3737 3.801293 TGTAGCGAACGCATTGTTTAAC 58.199 40.909 20.66 6.52 42.09 2.01
576 3738 3.495377 ACTGTAGCGAACGCATTGTTTAA 59.505 39.130 20.66 0.00 42.09 1.52
577 3739 3.061322 ACTGTAGCGAACGCATTGTTTA 58.939 40.909 20.66 1.09 42.09 2.01
578 3740 1.871039 ACTGTAGCGAACGCATTGTTT 59.129 42.857 20.66 2.05 42.09 2.83
579 3741 1.194547 CACTGTAGCGAACGCATTGTT 59.805 47.619 20.66 2.76 45.61 2.83
580 3742 0.790207 CACTGTAGCGAACGCATTGT 59.210 50.000 20.66 10.68 44.88 2.71
581 3743 0.519175 GCACTGTAGCGAACGCATTG 60.519 55.000 20.66 10.51 44.88 2.82
582 3744 0.948623 TGCACTGTAGCGAACGCATT 60.949 50.000 20.66 4.19 44.88 3.56
583 3745 0.740868 ATGCACTGTAGCGAACGCAT 60.741 50.000 20.66 8.78 44.88 4.73
584 3746 0.948623 AATGCACTGTAGCGAACGCA 60.949 50.000 20.66 4.79 44.88 5.24
585 3747 0.247301 GAATGCACTGTAGCGAACGC 60.247 55.000 11.31 11.31 42.33 4.84
586 3748 1.067693 TGAATGCACTGTAGCGAACG 58.932 50.000 0.00 0.00 37.31 3.95
587 3749 2.510615 GTGAATGCACTGTAGCGAAC 57.489 50.000 0.00 0.00 41.84 3.95
597 3759 3.365364 GGCAAAGACTGTAGTGAATGCAC 60.365 47.826 0.00 0.00 45.49 4.57
598 3760 2.813754 GGCAAAGACTGTAGTGAATGCA 59.186 45.455 11.91 0.00 34.37 3.96
599 3761 2.162408 GGGCAAAGACTGTAGTGAATGC 59.838 50.000 0.00 0.00 0.00 3.56
600 3762 2.749621 GGGGCAAAGACTGTAGTGAATG 59.250 50.000 0.00 0.00 0.00 2.67
601 3763 2.615493 CGGGGCAAAGACTGTAGTGAAT 60.615 50.000 0.00 0.00 0.00 2.57
602 3764 1.270625 CGGGGCAAAGACTGTAGTGAA 60.271 52.381 0.00 0.00 0.00 3.18
603 3765 0.320374 CGGGGCAAAGACTGTAGTGA 59.680 55.000 0.00 0.00 0.00 3.41
604 3766 0.320374 TCGGGGCAAAGACTGTAGTG 59.680 55.000 0.00 0.00 0.00 2.74
605 3767 1.207329 GATCGGGGCAAAGACTGTAGT 59.793 52.381 0.00 0.00 0.00 2.73
606 3768 1.482593 AGATCGGGGCAAAGACTGTAG 59.517 52.381 0.00 0.00 0.00 2.74
607 3769 1.207089 CAGATCGGGGCAAAGACTGTA 59.793 52.381 0.00 0.00 0.00 2.74
608 3770 0.036010 CAGATCGGGGCAAAGACTGT 60.036 55.000 0.00 0.00 0.00 3.55
609 3771 0.745845 CCAGATCGGGGCAAAGACTG 60.746 60.000 3.59 0.00 0.00 3.51
610 3772 0.909610 TCCAGATCGGGGCAAAGACT 60.910 55.000 12.28 0.00 34.36 3.24
611 3773 0.744771 GTCCAGATCGGGGCAAAGAC 60.745 60.000 11.98 0.00 34.36 3.01
612 3774 1.602237 GTCCAGATCGGGGCAAAGA 59.398 57.895 11.98 0.00 34.36 2.52
613 3775 1.452108 GGTCCAGATCGGGGCAAAG 60.452 63.158 18.52 0.00 32.89 2.77
614 3776 2.674754 GGTCCAGATCGGGGCAAA 59.325 61.111 18.52 0.00 32.89 3.68
615 3777 3.781307 CGGTCCAGATCGGGGCAA 61.781 66.667 18.52 0.00 32.89 4.52
626 3788 0.608035 GATCAAAAGTGGGCGGTCCA 60.608 55.000 0.00 0.00 44.79 4.02
627 3789 1.313091 GGATCAAAAGTGGGCGGTCC 61.313 60.000 0.00 0.00 0.00 4.46
628 3790 0.608035 TGGATCAAAAGTGGGCGGTC 60.608 55.000 0.00 0.00 0.00 4.79
629 3791 0.178975 TTGGATCAAAAGTGGGCGGT 60.179 50.000 0.00 0.00 0.00 5.68
630 3792 1.135024 CATTGGATCAAAAGTGGGCGG 60.135 52.381 0.00 0.00 0.00 6.13
631 3793 1.545582 ACATTGGATCAAAAGTGGGCG 59.454 47.619 0.00 0.00 0.00 6.13
632 3794 2.827921 AGACATTGGATCAAAAGTGGGC 59.172 45.455 0.00 0.00 0.00 5.36
633 3795 4.338879 AGAGACATTGGATCAAAAGTGGG 58.661 43.478 0.00 0.00 0.00 4.61
634 3796 4.093998 CGAGAGACATTGGATCAAAAGTGG 59.906 45.833 0.00 0.00 0.00 4.00
635 3797 4.093998 CCGAGAGACATTGGATCAAAAGTG 59.906 45.833 0.00 0.00 0.00 3.16
636 3798 4.020218 TCCGAGAGACATTGGATCAAAAGT 60.020 41.667 0.00 0.00 0.00 2.66
637 3799 4.507710 TCCGAGAGACATTGGATCAAAAG 58.492 43.478 0.00 0.00 0.00 2.27
638 3800 4.551702 TCCGAGAGACATTGGATCAAAA 57.448 40.909 0.00 0.00 0.00 2.44
639 3801 4.760530 ATCCGAGAGACATTGGATCAAA 57.239 40.909 0.00 0.00 38.91 2.69
640 3802 5.869649 TTATCCGAGAGACATTGGATCAA 57.130 39.130 0.00 0.00 41.74 2.57
641 3803 5.221521 CCTTTATCCGAGAGACATTGGATCA 60.222 44.000 0.00 0.00 41.74 2.92
642 3804 5.221541 ACCTTTATCCGAGAGACATTGGATC 60.222 44.000 0.00 0.00 41.74 3.36
643 3805 4.656112 ACCTTTATCCGAGAGACATTGGAT 59.344 41.667 1.30 1.30 44.35 3.41
644 3806 4.030913 ACCTTTATCCGAGAGACATTGGA 58.969 43.478 0.00 0.00 37.16 3.53
645 3807 4.408182 ACCTTTATCCGAGAGACATTGG 57.592 45.455 0.00 0.00 0.00 3.16
646 3808 6.392625 TCTACCTTTATCCGAGAGACATTG 57.607 41.667 0.00 0.00 0.00 2.82
647 3809 5.010213 GCTCTACCTTTATCCGAGAGACATT 59.990 44.000 1.47 0.00 36.55 2.71
648 3810 4.521256 GCTCTACCTTTATCCGAGAGACAT 59.479 45.833 1.47 0.00 36.55 3.06
649 3811 3.884091 GCTCTACCTTTATCCGAGAGACA 59.116 47.826 1.47 0.00 36.55 3.41
650 3812 3.884091 TGCTCTACCTTTATCCGAGAGAC 59.116 47.826 1.47 0.00 36.55 3.36
651 3813 3.884091 GTGCTCTACCTTTATCCGAGAGA 59.116 47.826 1.47 0.00 36.55 3.10
652 3814 3.886505 AGTGCTCTACCTTTATCCGAGAG 59.113 47.826 0.00 0.00 37.34 3.20
653 3815 3.632604 CAGTGCTCTACCTTTATCCGAGA 59.367 47.826 0.00 0.00 0.00 4.04
654 3816 3.381908 ACAGTGCTCTACCTTTATCCGAG 59.618 47.826 0.00 0.00 0.00 4.63
655 3817 3.362706 ACAGTGCTCTACCTTTATCCGA 58.637 45.455 0.00 0.00 0.00 4.55
656 3818 3.802948 ACAGTGCTCTACCTTTATCCG 57.197 47.619 0.00 0.00 0.00 4.18
657 3819 5.855740 ACTACAGTGCTCTACCTTTATCC 57.144 43.478 0.00 0.00 0.00 2.59
658 3820 6.752815 GTGAACTACAGTGCTCTACCTTTATC 59.247 42.308 0.00 0.00 0.00 1.75
659 3821 6.437793 AGTGAACTACAGTGCTCTACCTTTAT 59.562 38.462 0.00 0.00 0.00 1.40
660 3822 5.773680 AGTGAACTACAGTGCTCTACCTTTA 59.226 40.000 0.00 0.00 0.00 1.85
661 3823 4.589374 AGTGAACTACAGTGCTCTACCTTT 59.411 41.667 0.00 0.00 0.00 3.11
662 3824 4.021894 CAGTGAACTACAGTGCTCTACCTT 60.022 45.833 0.00 0.00 41.99 3.50
663 3825 3.508012 CAGTGAACTACAGTGCTCTACCT 59.492 47.826 0.00 0.00 41.99 3.08
664 3826 3.839293 CAGTGAACTACAGTGCTCTACC 58.161 50.000 0.00 0.00 41.99 3.18
671 3833 1.070577 GCAACGCAGTGAACTACAGTG 60.071 52.381 0.00 0.00 45.00 3.66
672 3834 1.217882 GCAACGCAGTGAACTACAGT 58.782 50.000 0.00 0.00 45.00 3.55
673 3835 1.070577 GTGCAACGCAGTGAACTACAG 60.071 52.381 0.00 0.00 45.00 2.74
674 3836 0.934496 GTGCAACGCAGTGAACTACA 59.066 50.000 0.00 0.00 45.00 2.74
675 3837 0.934496 TGTGCAACGCAGTGAACTAC 59.066 50.000 0.00 0.00 45.00 2.73
676 3838 1.530720 CATGTGCAACGCAGTGAACTA 59.469 47.619 0.00 0.00 45.00 2.24
677 3839 0.308684 CATGTGCAACGCAGTGAACT 59.691 50.000 0.00 0.00 45.00 3.01
678 3840 0.661187 CCATGTGCAACGCAGTGAAC 60.661 55.000 0.00 0.00 45.00 3.18
679 3841 1.653667 CCATGTGCAACGCAGTGAA 59.346 52.632 0.00 0.00 45.00 3.18
680 3842 2.906939 GCCATGTGCAACGCAGTGA 61.907 57.895 0.00 0.00 45.00 3.41
681 3843 2.429571 GCCATGTGCAACGCAGTG 60.430 61.111 0.00 0.00 45.00 3.66
690 3852 2.113860 TTCTCTACCTTGCCATGTGC 57.886 50.000 0.00 0.00 41.77 4.57
691 3853 3.209410 GGATTCTCTACCTTGCCATGTG 58.791 50.000 0.00 0.00 0.00 3.21
692 3854 2.158900 CGGATTCTCTACCTTGCCATGT 60.159 50.000 0.00 0.00 0.00 3.21
693 3855 2.487934 CGGATTCTCTACCTTGCCATG 58.512 52.381 0.00 0.00 0.00 3.66
694 3856 1.202698 GCGGATTCTCTACCTTGCCAT 60.203 52.381 0.00 0.00 0.00 4.40
695 3857 0.178068 GCGGATTCTCTACCTTGCCA 59.822 55.000 0.00 0.00 0.00 4.92
696 3858 0.876342 CGCGGATTCTCTACCTTGCC 60.876 60.000 0.00 0.00 0.00 4.52
697 3859 1.491505 GCGCGGATTCTCTACCTTGC 61.492 60.000 8.83 0.00 0.00 4.01
698 3860 0.876342 GGCGCGGATTCTCTACCTTG 60.876 60.000 8.83 0.00 0.00 3.61
699 3861 1.442148 GGCGCGGATTCTCTACCTT 59.558 57.895 8.83 0.00 0.00 3.50
700 3862 2.499827 GGGCGCGGATTCTCTACCT 61.500 63.158 8.83 0.00 0.00 3.08
701 3863 2.029221 GGGCGCGGATTCTCTACC 59.971 66.667 8.83 0.00 0.00 3.18
702 3864 0.249911 AATGGGCGCGGATTCTCTAC 60.250 55.000 8.83 0.00 0.00 2.59
703 3865 0.033504 GAATGGGCGCGGATTCTCTA 59.966 55.000 18.08 0.00 0.00 2.43
704 3866 1.227674 GAATGGGCGCGGATTCTCT 60.228 57.895 18.08 0.00 0.00 3.10
705 3867 0.886490 ATGAATGGGCGCGGATTCTC 60.886 55.000 22.97 8.23 31.07 2.87
706 3868 1.149174 ATGAATGGGCGCGGATTCT 59.851 52.632 22.97 11.38 31.07 2.40
707 3869 1.165907 TCATGAATGGGCGCGGATTC 61.166 55.000 18.38 18.38 0.00 2.52
708 3870 1.152984 TCATGAATGGGCGCGGATT 60.153 52.632 8.83 1.02 0.00 3.01
709 3871 1.893808 GTCATGAATGGGCGCGGAT 60.894 57.895 8.83 0.00 0.00 4.18
710 3872 2.513666 GTCATGAATGGGCGCGGA 60.514 61.111 8.83 0.00 0.00 5.54
711 3873 2.823593 TGTCATGAATGGGCGCGG 60.824 61.111 8.83 0.00 0.00 6.46
712 3874 2.404789 GTGTCATGAATGGGCGCG 59.595 61.111 0.00 0.00 0.00 6.86
713 3875 2.040213 CTCGTGTCATGAATGGGCGC 62.040 60.000 0.00 0.00 0.00 6.53
714 3876 0.740868 ACTCGTGTCATGAATGGGCG 60.741 55.000 0.00 0.00 0.00 6.13
715 3877 1.933853 GTACTCGTGTCATGAATGGGC 59.066 52.381 0.00 0.00 0.00 5.36
716 3878 2.093711 TGGTACTCGTGTCATGAATGGG 60.094 50.000 0.00 0.00 0.00 4.00
717 3879 3.245518 TGGTACTCGTGTCATGAATGG 57.754 47.619 0.00 0.00 0.00 3.16
718 3880 3.557185 CCATGGTACTCGTGTCATGAATG 59.443 47.826 16.50 0.00 39.27 2.67
719 3881 3.432186 CCCATGGTACTCGTGTCATGAAT 60.432 47.826 11.73 0.00 39.27 2.57
720 3882 2.093711 CCCATGGTACTCGTGTCATGAA 60.094 50.000 11.73 0.00 39.27 2.57
721 3883 1.480545 CCCATGGTACTCGTGTCATGA 59.519 52.381 11.73 0.00 39.27 3.07
722 3884 1.207089 ACCCATGGTACTCGTGTCATG 59.793 52.381 11.73 10.66 37.37 3.07
723 3885 1.568504 ACCCATGGTACTCGTGTCAT 58.431 50.000 11.73 0.00 32.11 3.06
815 3977 9.787435 TTGCTAAGTCCTTTTTCTATTAGAACA 57.213 29.630 5.62 0.00 33.26 3.18
830 3992 7.177921 GGTTATAAAAACCCTTTGCTAAGTCCT 59.822 37.037 7.14 0.00 34.26 3.85
838 4000 7.608153 AGTGTATGGTTATAAAAACCCTTTGC 58.392 34.615 4.55 0.00 39.54 3.68
1467 4699 2.296471 CCTGACGTACTTGGTCTTGTCT 59.704 50.000 0.00 0.00 35.45 3.41
1598 4878 6.577239 AAACTAATGGGTTTCTTTGGCAACAA 60.577 34.615 0.00 0.00 44.36 2.83
1611 4891 4.217550 CGGTCATTGTGAAACTAATGGGTT 59.782 41.667 0.00 0.00 36.59 4.11
1613 4893 3.756434 ACGGTCATTGTGAAACTAATGGG 59.244 43.478 0.00 0.00 36.59 4.00
1614 4894 4.454161 TCACGGTCATTGTGAAACTAATGG 59.546 41.667 0.00 0.00 42.99 3.16
1617 4897 4.699637 ACTCACGGTCATTGTGAAACTAA 58.300 39.130 0.00 0.00 45.05 2.24
1621 4909 5.587043 ACTTAAACTCACGGTCATTGTGAAA 59.413 36.000 0.00 0.00 45.05 2.69
1627 4915 6.370718 GGTGAATACTTAAACTCACGGTCATT 59.629 38.462 0.00 0.00 39.26 2.57
1630 4918 5.347907 CAGGTGAATACTTAAACTCACGGTC 59.652 44.000 0.00 0.00 39.26 4.79
1634 4922 9.447040 GAAAAACAGGTGAATACTTAAACTCAC 57.553 33.333 0.00 0.00 37.95 3.51
1642 4930 9.883142 TGAAAAATGAAAAACAGGTGAATACTT 57.117 25.926 0.00 0.00 0.00 2.24
1643 4931 9.313118 GTGAAAAATGAAAAACAGGTGAATACT 57.687 29.630 0.00 0.00 0.00 2.12
1644 4932 9.313118 AGTGAAAAATGAAAAACAGGTGAATAC 57.687 29.630 0.00 0.00 0.00 1.89
1646 4934 9.533253 CTAGTGAAAAATGAAAAACAGGTGAAT 57.467 29.630 0.00 0.00 0.00 2.57
1677 4972 9.433153 GCTACCTAAACTAAGTTAAGTGAACAT 57.567 33.333 0.00 0.00 40.86 2.71
1678 4973 8.645110 AGCTACCTAAACTAAGTTAAGTGAACA 58.355 33.333 0.00 0.00 40.86 3.18
1687 4982 9.654663 CAGTGAATAAGCTACCTAAACTAAGTT 57.345 33.333 0.00 0.00 0.00 2.66
1688 4983 9.032624 TCAGTGAATAAGCTACCTAAACTAAGT 57.967 33.333 0.00 0.00 0.00 2.24
1689 4984 9.303537 GTCAGTGAATAAGCTACCTAAACTAAG 57.696 37.037 0.00 0.00 0.00 2.18
1692 4987 7.324178 CAGTCAGTGAATAAGCTACCTAAACT 58.676 38.462 0.00 0.00 0.00 2.66
1693 4988 6.036191 GCAGTCAGTGAATAAGCTACCTAAAC 59.964 42.308 0.00 0.00 0.00 2.01
1694 4989 6.070767 AGCAGTCAGTGAATAAGCTACCTAAA 60.071 38.462 3.82 0.00 0.00 1.85
1695 4990 5.422331 AGCAGTCAGTGAATAAGCTACCTAA 59.578 40.000 3.82 0.00 0.00 2.69
1696 4991 4.956700 AGCAGTCAGTGAATAAGCTACCTA 59.043 41.667 3.82 0.00 0.00 3.08
1697 4992 3.772025 AGCAGTCAGTGAATAAGCTACCT 59.228 43.478 3.82 0.00 0.00 3.08
1698 4993 4.130286 AGCAGTCAGTGAATAAGCTACC 57.870 45.455 3.82 0.00 0.00 3.18
1699 4994 7.278868 ACAAATAGCAGTCAGTGAATAAGCTAC 59.721 37.037 12.99 0.00 36.13 3.58
1700 4995 7.331026 ACAAATAGCAGTCAGTGAATAAGCTA 58.669 34.615 13.07 13.07 37.49 3.32
1701 4996 6.176183 ACAAATAGCAGTCAGTGAATAAGCT 58.824 36.000 9.89 9.89 34.84 3.74
1702 4997 6.428385 ACAAATAGCAGTCAGTGAATAAGC 57.572 37.500 0.00 0.00 0.00 3.09
1703 4998 8.391106 GGTAACAAATAGCAGTCAGTGAATAAG 58.609 37.037 0.00 0.00 32.14 1.73
1704 4999 8.263940 GGTAACAAATAGCAGTCAGTGAATAA 57.736 34.615 0.00 0.00 32.14 1.40
1724 5019 0.179189 GCAGCAGCAACGATGGTAAC 60.179 55.000 0.00 0.00 41.58 2.50
1768 5074 9.844790 CATATGCTCAGACAAATGAGTTTAAAA 57.155 29.630 5.69 0.00 46.93 1.52
1778 5084 9.961265 CAAATAATCACATATGCTCAGACAAAT 57.039 29.630 1.58 0.00 0.00 2.32
1783 5089 7.658982 GGTCTCAAATAATCACATATGCTCAGA 59.341 37.037 1.58 0.00 0.00 3.27
1784 5090 7.359849 CGGTCTCAAATAATCACATATGCTCAG 60.360 40.741 1.58 0.00 0.00 3.35
1788 5094 5.385617 GCGGTCTCAAATAATCACATATGC 58.614 41.667 1.58 0.00 0.00 3.14
1790 5096 5.869579 AGGCGGTCTCAAATAATCACATAT 58.130 37.500 0.00 0.00 0.00 1.78
1791 5097 5.290493 AGGCGGTCTCAAATAATCACATA 57.710 39.130 0.00 0.00 0.00 2.29
1792 5098 4.156455 AGGCGGTCTCAAATAATCACAT 57.844 40.909 0.00 0.00 0.00 3.21
1793 5099 3.627395 AGGCGGTCTCAAATAATCACA 57.373 42.857 0.00 0.00 0.00 3.58
1794 5100 4.034510 CAGAAGGCGGTCTCAAATAATCAC 59.965 45.833 0.00 0.00 0.00 3.06
1795 5101 4.191544 CAGAAGGCGGTCTCAAATAATCA 58.808 43.478 0.00 0.00 0.00 2.57
1796 5102 3.002759 GCAGAAGGCGGTCTCAAATAATC 59.997 47.826 0.00 0.00 0.00 1.75
1797 5103 2.945668 GCAGAAGGCGGTCTCAAATAAT 59.054 45.455 0.00 0.00 0.00 1.28
1798 5104 2.356135 GCAGAAGGCGGTCTCAAATAA 58.644 47.619 0.00 0.00 0.00 1.40
1799 5105 2.024176 GCAGAAGGCGGTCTCAAATA 57.976 50.000 0.00 0.00 0.00 1.40
1822 5128 3.913548 TCGGTACTACGCTTTACAACA 57.086 42.857 0.00 0.00 0.00 3.33
1831 5137 6.576684 GTCAAGATAAGTATTCGGTACTACGC 59.423 42.308 0.00 0.00 42.83 4.42
1840 5146 6.980978 ACATGACCAGTCAAGATAAGTATTCG 59.019 38.462 9.79 0.00 43.58 3.34
1854 5160 3.339141 GGGAAGAGAAACATGACCAGTC 58.661 50.000 0.00 0.00 0.00 3.51
1859 5165 2.087646 GCAGGGGAAGAGAAACATGAC 58.912 52.381 0.00 0.00 0.00 3.06
1862 5168 0.984230 TCGCAGGGGAAGAGAAACAT 59.016 50.000 0.00 0.00 0.00 2.71
1876 5182 1.061131 CTACCGCAACTCAAATCGCAG 59.939 52.381 0.00 0.00 0.00 5.18
1880 5186 5.060940 GCAAAAATCTACCGCAACTCAAATC 59.939 40.000 0.00 0.00 0.00 2.17
1886 5192 3.821033 AGAAGCAAAAATCTACCGCAACT 59.179 39.130 0.00 0.00 0.00 3.16
1887 5193 4.083271 AGAGAAGCAAAAATCTACCGCAAC 60.083 41.667 0.00 0.00 0.00 4.17
1888 5194 4.072131 AGAGAAGCAAAAATCTACCGCAA 58.928 39.130 0.00 0.00 0.00 4.85
1889 5195 3.436704 CAGAGAAGCAAAAATCTACCGCA 59.563 43.478 0.00 0.00 0.00 5.69
1890 5196 3.437049 ACAGAGAAGCAAAAATCTACCGC 59.563 43.478 0.00 0.00 0.00 5.68
1891 5197 5.613358 AACAGAGAAGCAAAAATCTACCG 57.387 39.130 0.00 0.00 0.00 4.02
1897 5203 9.252962 CAAGATGTAAAACAGAGAAGCAAAAAT 57.747 29.630 0.00 0.00 0.00 1.82
1899 5205 6.697019 GCAAGATGTAAAACAGAGAAGCAAAA 59.303 34.615 0.00 0.00 0.00 2.44
1915 5228 3.438434 TGCAAATTACGCTGCAAGATGTA 59.562 39.130 0.00 0.00 45.25 2.29
1916 5229 2.228582 TGCAAATTACGCTGCAAGATGT 59.771 40.909 0.00 0.00 45.25 3.06
1917 5230 2.866198 TGCAAATTACGCTGCAAGATG 58.134 42.857 0.00 0.00 45.25 2.90
1922 5235 1.606189 TGAACTGCAAATTACGCTGCA 59.394 42.857 0.00 2.73 46.01 4.41
1923 5236 2.245096 CTGAACTGCAAATTACGCTGC 58.755 47.619 6.58 0.52 39.09 5.25
1924 5237 2.095567 AGCTGAACTGCAAATTACGCTG 60.096 45.455 6.47 5.46 34.99 5.18
1925 5238 2.154462 AGCTGAACTGCAAATTACGCT 58.846 42.857 6.47 0.00 34.99 5.07
1926 5239 2.619013 AGCTGAACTGCAAATTACGC 57.381 45.000 6.47 0.00 34.99 4.42
1927 5240 4.154195 ACCTAAGCTGAACTGCAAATTACG 59.846 41.667 6.47 0.00 34.99 3.18
1928 5241 5.181245 TCACCTAAGCTGAACTGCAAATTAC 59.819 40.000 6.47 0.00 34.99 1.89
1929 5242 5.312895 TCACCTAAGCTGAACTGCAAATTA 58.687 37.500 6.47 0.00 34.99 1.40
1930 5243 4.144297 TCACCTAAGCTGAACTGCAAATT 58.856 39.130 6.47 0.00 34.99 1.82
2027 5341 2.569404 AGCCCTACAGAGAAGGAAGTTG 59.431 50.000 0.00 0.00 36.08 3.16
2030 5344 1.484240 CCAGCCCTACAGAGAAGGAAG 59.516 57.143 0.00 0.00 36.08 3.46
2031 5345 1.078823 TCCAGCCCTACAGAGAAGGAA 59.921 52.381 0.00 0.00 36.08 3.36
2032 5346 0.710588 TCCAGCCCTACAGAGAAGGA 59.289 55.000 0.00 0.00 36.08 3.36
2033 5347 1.573108 TTCCAGCCCTACAGAGAAGG 58.427 55.000 0.00 0.00 0.00 3.46
2085 5401 6.943146 CCACTCTATAGGTTCTGAGCTATACA 59.057 42.308 0.00 0.00 43.01 2.29
2118 5435 3.520691 ATACAGACCCTACAGCGGATA 57.479 47.619 0.00 0.00 0.00 2.59
2122 5439 5.010314 TGGTAATAATACAGACCCTACAGCG 59.990 44.000 0.00 0.00 33.45 5.18
2174 5494 7.744733 TCCTGGTACATATGAGAAATATGCAA 58.255 34.615 10.38 0.00 38.20 4.08
2175 5495 7.235399 TCTCCTGGTACATATGAGAAATATGCA 59.765 37.037 10.38 0.00 38.20 3.96
2176 5496 7.615403 TCTCCTGGTACATATGAGAAATATGC 58.385 38.462 10.38 0.00 38.20 3.14
2180 5500 7.021873 AGGATCTCCTGGTACATATGAGAAAT 58.978 38.462 10.38 0.00 46.55 2.17
2238 5559 6.295719 TCCTCCTTTAGTTTGTCCAGTATC 57.704 41.667 0.00 0.00 0.00 2.24
2285 5606 2.234908 ACTTCCCCATCTTCGTCTTCAG 59.765 50.000 0.00 0.00 0.00 3.02
2292 5613 3.334583 TCTGAAACTTCCCCATCTTCG 57.665 47.619 0.00 0.00 0.00 3.79
2409 5730 3.804036 TGAAGTTGAACGAATGGTGACT 58.196 40.909 0.00 0.00 0.00 3.41
2500 5822 2.989166 GCATTGCAAGAGCTAAACCAAC 59.011 45.455 16.80 0.00 42.74 3.77
2597 5919 8.364894 TCAGCTAGTGTTCAAGTTATAAACAGA 58.635 33.333 0.00 0.00 33.84 3.41
2829 6877 3.833732 AGGAGAACTGCACGGATAGATA 58.166 45.455 0.00 0.00 0.00 1.98
2881 6933 0.178767 CGTTGAGATCCCATGGAGCA 59.821 55.000 15.22 0.35 41.08 4.26
2891 6943 1.396301 CAGGCTTCAAGCGTTGAGATC 59.604 52.381 0.66 0.00 43.62 2.75
2908 6960 0.820226 TCGCTTCAGATGTCCTCAGG 59.180 55.000 0.00 0.00 0.00 3.86
2913 6965 3.060003 CGATGAATTCGCTTCAGATGTCC 60.060 47.826 0.04 0.00 46.71 4.02
2916 6968 2.222678 CCCGATGAATTCGCTTCAGATG 59.777 50.000 0.04 0.36 46.71 2.90
2933 6985 1.694844 TGGTACGATCTTATGCCCGA 58.305 50.000 0.00 0.00 0.00 5.14
2943 6995 3.520290 TCTGGTGAACATGGTACGATC 57.480 47.619 0.00 0.00 0.00 3.69
3052 7108 1.866601 CAGCGACATGAACAGACACAA 59.133 47.619 0.00 0.00 0.00 3.33
3090 7146 3.119495 ACCAAATACAGAATGAAAGGCGC 60.119 43.478 0.00 0.00 39.69 6.53
3102 7158 3.157087 ACAGCTCCCAAACCAAATACAG 58.843 45.455 0.00 0.00 0.00 2.74
3162 7218 2.235402 ACAGTCAATGTTACCTACCCGG 59.765 50.000 0.00 0.00 39.96 5.73
3189 7245 3.073274 AGGGCACAAGATTTACAGGAC 57.927 47.619 0.00 0.00 0.00 3.85
3190 7246 5.191722 AGAATAGGGCACAAGATTTACAGGA 59.808 40.000 0.00 0.00 0.00 3.86
3192 7248 6.599244 TGAAGAATAGGGCACAAGATTTACAG 59.401 38.462 0.00 0.00 0.00 2.74
3194 7250 7.391148 TTGAAGAATAGGGCACAAGATTTAC 57.609 36.000 0.00 0.00 0.00 2.01
3196 7252 6.916360 TTTGAAGAATAGGGCACAAGATTT 57.084 33.333 0.00 0.00 0.00 2.17
3197 7253 6.916360 TTTTGAAGAATAGGGCACAAGATT 57.084 33.333 0.00 0.00 0.00 2.40
3198 7254 6.628844 GCATTTTGAAGAATAGGGCACAAGAT 60.629 38.462 0.00 0.00 0.00 2.40
3199 7255 5.336690 GCATTTTGAAGAATAGGGCACAAGA 60.337 40.000 0.00 0.00 0.00 3.02
3200 7256 4.866486 GCATTTTGAAGAATAGGGCACAAG 59.134 41.667 0.00 0.00 0.00 3.16
3201 7257 4.282957 TGCATTTTGAAGAATAGGGCACAA 59.717 37.500 0.00 0.00 0.00 3.33
3202 7258 3.831333 TGCATTTTGAAGAATAGGGCACA 59.169 39.130 0.00 0.00 0.00 4.57
3203 7259 4.082026 ACTGCATTTTGAAGAATAGGGCAC 60.082 41.667 0.00 0.00 0.00 5.01
3204 7260 4.082081 CACTGCATTTTGAAGAATAGGGCA 60.082 41.667 0.00 0.00 0.00 5.36
3206 7262 5.404946 CACACTGCATTTTGAAGAATAGGG 58.595 41.667 0.00 0.00 0.00 3.53
3210 7266 3.007182 CCCCACACTGCATTTTGAAGAAT 59.993 43.478 0.00 0.00 0.00 2.40
3228 7350 0.116143 CCCCCAAATTGAAGACCCCA 59.884 55.000 0.00 0.00 0.00 4.96
3237 7359 0.839853 TGCCCCTTTCCCCCAAATTG 60.840 55.000 0.00 0.00 0.00 2.32
3246 7368 0.179043 GCTAGCTACTGCCCCTTTCC 60.179 60.000 7.70 0.00 40.80 3.13
3255 7377 2.897436 TGAATGTGCAGCTAGCTACTG 58.103 47.619 18.86 7.57 45.94 2.74
3270 7392 7.475015 ACAAATCATAACGAGTCCATTGAATG 58.525 34.615 0.00 0.00 0.00 2.67
3297 7419 3.139397 TGGTCACCCCCATTATGATAACC 59.861 47.826 0.00 0.00 0.00 2.85
3302 7424 3.397618 CCTTATGGTCACCCCCATTATGA 59.602 47.826 0.00 0.00 42.70 2.15
3303 7425 3.140144 ACCTTATGGTCACCCCCATTATG 59.860 47.826 0.00 0.00 44.78 1.90
3307 7429 2.418669 CTACCTTATGGTCACCCCCAT 58.581 52.381 3.06 0.00 44.78 4.00
3311 7433 0.106149 CGCCTACCTTATGGTCACCC 59.894 60.000 3.06 0.00 44.78 4.61
3313 7435 0.464452 AGCGCCTACCTTATGGTCAC 59.536 55.000 2.29 0.00 44.78 3.67
3317 7439 1.583054 GTCAAGCGCCTACCTTATGG 58.417 55.000 2.29 0.00 39.83 2.74
3318 7440 1.202371 TCGTCAAGCGCCTACCTTATG 60.202 52.381 2.29 0.00 41.07 1.90
3319 7441 1.108776 TCGTCAAGCGCCTACCTTAT 58.891 50.000 2.29 0.00 41.07 1.73
3322 7444 0.669625 GTTTCGTCAAGCGCCTACCT 60.670 55.000 2.29 0.00 41.07 3.08
3324 7446 1.145803 AAGTTTCGTCAAGCGCCTAC 58.854 50.000 2.29 0.00 41.07 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.