Multiple sequence alignment - TraesCS4A01G374600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G374600 chr4A 100.000 5742 0 0 1 5742 649201601 649207342 0.000000e+00 10604
1 TraesCS4A01G374600 chr7A 88.414 3461 279 68 1752 5160 41794400 41797790 0.000000e+00 4058
2 TraesCS4A01G374600 chr7A 91.269 859 58 13 866 1714 41793541 41794392 0.000000e+00 1155
3 TraesCS4A01G374600 chr7A 82.825 361 48 9 2758 3108 41795011 41795367 1.550000e-80 311
4 TraesCS4A01G374600 chr7D 90.993 1621 105 29 2790 4396 42497525 42499118 0.000000e+00 2146
5 TraesCS4A01G374600 chr7D 87.529 1748 130 47 1 1714 42494636 42496329 0.000000e+00 1940
6 TraesCS4A01G374600 chr7D 92.710 727 46 7 1770 2493 42496802 42497524 0.000000e+00 1042
7 TraesCS4A01G374600 chr7D 89.183 869 39 18 4445 5291 42499142 42499977 0.000000e+00 1033
8 TraesCS4A01G374600 chr7D 91.333 150 12 1 5594 5742 42500587 42500736 2.710000e-48 204
9 TraesCS4A01G374600 chr4D 91.111 270 21 3 1 268 370917436 370917168 4.230000e-96 363
10 TraesCS4A01G374600 chr5D 90.370 270 23 3 1 268 416384856 416385124 9.150000e-93 351
11 TraesCS4A01G374600 chr1B 90.370 270 23 3 1 268 264534882 264535150 9.150000e-93 351
12 TraesCS4A01G374600 chr1B 89.744 273 24 3 1 269 664811524 664811252 4.260000e-91 346
13 TraesCS4A01G374600 chr1D 90.370 270 20 6 1 268 189414650 189414385 3.290000e-92 350
14 TraesCS4A01G374600 chr2D 90.000 270 25 2 1 268 630204735 630204466 1.180000e-91 348
15 TraesCS4A01G374600 chr6D 90.000 270 23 4 1 268 304916741 304916474 4.260000e-91 346
16 TraesCS4A01G374600 chr5B 89.085 284 24 6 1 279 503119996 503120277 4.260000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G374600 chr4A 649201601 649207342 5741 False 10604.000000 10604 100.000000 1 5742 1 chr4A.!!$F1 5741
1 TraesCS4A01G374600 chr7A 41793541 41797790 4249 False 1841.333333 4058 87.502667 866 5160 3 chr7A.!!$F1 4294
2 TraesCS4A01G374600 chr7D 42494636 42500736 6100 False 1273.000000 2146 90.349600 1 5742 5 chr7D.!!$F1 5741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 825 0.037419 TTGTCCGTTTAGGTACGCCC 60.037 55.0 0.00 0.0 40.10 6.13 F
843 872 0.461870 TGTCCGCGGATGATTTGAGG 60.462 55.0 33.58 0.0 0.00 3.86 F
1720 1764 0.034337 GTTGGGAGCTTGTGTCGGTA 59.966 55.0 0.00 0.0 0.00 4.02 F
1723 1767 0.249398 GGGAGCTTGTGTCGGTACAT 59.751 55.0 0.00 0.0 38.08 2.29 F
1858 2350 0.459489 TTTGCTGTGGTTTGCTGGAC 59.541 50.0 0.00 0.0 0.00 4.02 F
2074 2567 0.604073 TGACTAATCCGTTGCACCGA 59.396 50.0 4.75 0.0 0.00 4.69 F
2076 2569 0.606604 ACTAATCCGTTGCACCGACT 59.393 50.0 4.75 0.0 0.00 4.18 F
3924 4426 1.164411 CCGCTTACTTTCACCATGCA 58.836 50.0 0.00 0.0 0.00 3.96 F
4308 4819 0.036875 GCCCTAGACTGCCACAGTTT 59.963 55.0 1.15 0.0 45.44 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1746 0.034337 GTACCGACACAAGCTCCCAA 59.966 55.000 0.00 0.00 0.00 4.12 R
2691 3190 0.613572 TGCCCACACCGATCTGTAGA 60.614 55.000 0.00 0.00 0.00 2.59 R
3313 3813 0.742505 CCATGCATGGTGTAAGCTGG 59.257 55.000 33.68 9.41 43.05 4.85 R
3638 4139 4.126520 ACTGTACACCATGGGGATTTTT 57.873 40.909 24.27 0.00 38.05 1.94 R
3823 4325 2.880890 GGAGAAAGTGACTGCAACATGT 59.119 45.455 0.00 0.00 0.00 3.21 R
4054 4558 0.234106 CAGCTAGGATTGCATTCGCG 59.766 55.000 0.00 0.00 42.97 5.87 R
4056 4560 1.302366 TGCAGCTAGGATTGCATTCG 58.698 50.000 2.69 0.00 44.72 3.34 R
4739 5291 0.037697 ATCCAGCGACAGTTGCGTTA 60.038 50.000 7.16 0.00 37.44 3.18 R
5496 6169 0.038251 GCGATCGATCCATGCAGGTA 60.038 55.000 21.57 0.00 39.02 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.874701 CAAGTTGTGTCTTCTGGTCCAG 59.125 50.000 13.21 13.21 0.00 3.86
68 69 9.938280 TCCAGAAAATTCTCTAAATAGTTTCGA 57.062 29.630 0.00 0.00 34.74 3.71
101 102 6.596497 GGACTCCGTTTGGTATTGATTTTCTA 59.404 38.462 0.00 0.00 36.30 2.10
102 103 7.282450 GGACTCCGTTTGGTATTGATTTTCTAT 59.718 37.037 0.00 0.00 36.30 1.98
103 104 9.321562 GACTCCGTTTGGTATTGATTTTCTATA 57.678 33.333 0.00 0.00 36.30 1.31
104 105 9.847224 ACTCCGTTTGGTATTGATTTTCTATAT 57.153 29.630 0.00 0.00 36.30 0.86
106 107 9.621629 TCCGTTTGGTATTGATTTTCTATATGT 57.378 29.630 0.00 0.00 36.30 2.29
151 153 1.908619 TGACACTGGGCACTATGTCAT 59.091 47.619 18.38 0.00 44.88 3.06
155 157 3.774766 ACACTGGGCACTATGTCATTAGA 59.225 43.478 0.00 0.00 0.00 2.10
156 158 4.225042 ACACTGGGCACTATGTCATTAGAA 59.775 41.667 0.00 0.00 0.00 2.10
159 161 7.164122 CACTGGGCACTATGTCATTAGAATAT 58.836 38.462 0.00 0.00 0.00 1.28
163 165 7.017551 TGGGCACTATGTCATTAGAATATTCCT 59.982 37.037 11.92 2.68 0.00 3.36
276 278 1.749609 GAGACGTATCAAACCGCGCC 61.750 60.000 5.07 0.00 0.00 6.53
277 279 3.134141 GACGTATCAAACCGCGCCG 62.134 63.158 0.00 0.00 0.00 6.46
362 364 0.038251 CTGCGTGGTGAGAGCTACAA 60.038 55.000 0.00 0.00 0.00 2.41
363 365 0.391228 TGCGTGGTGAGAGCTACAAA 59.609 50.000 0.00 0.00 0.00 2.83
399 401 1.260538 TGCAGTAGTAGCAGCAGCCT 61.261 55.000 0.00 0.00 43.56 4.58
432 434 2.764547 GGCGAGGAGGGGTAGCTT 60.765 66.667 0.00 0.00 0.00 3.74
436 438 1.826709 GAGGAGGGGTAGCTTCAGC 59.173 63.158 0.00 0.00 42.49 4.26
483 485 3.011517 GAGGAGGGCCAGCTCCAA 61.012 66.667 24.97 0.00 41.98 3.53
486 488 2.679716 GAGGGCCAGCTCCAACAT 59.320 61.111 6.18 0.00 0.00 2.71
496 498 3.133542 CCAGCTCCAACATCAGTAGATCA 59.866 47.826 0.00 0.00 30.20 2.92
507 509 2.202878 TAGATCAAGTGGCGGCGC 60.203 61.111 26.17 26.17 0.00 6.53
524 526 3.077519 GCGCTATGGGACGACTGGT 62.078 63.158 0.00 0.00 0.00 4.00
590 592 2.875485 GCTACGAGACGACTGGCA 59.125 61.111 0.00 0.00 0.00 4.92
680 682 4.393680 TCCGTGCATTTTATTGTAGTCACC 59.606 41.667 0.00 0.00 0.00 4.02
694 696 2.398588 AGTCACCGATATGTGGTCCAT 58.601 47.619 0.00 0.00 37.72 3.41
699 701 0.108396 CGATATGTGGTCCATGGGCA 59.892 55.000 20.13 9.94 34.86 5.36
702 704 1.521764 TATGTGGTCCATGGGCAGAT 58.478 50.000 20.13 10.74 34.86 2.90
739 768 2.088178 GCATTTGCTCCGCGTTTGG 61.088 57.895 4.92 0.00 38.21 3.28
740 769 1.578926 CATTTGCTCCGCGTTTGGA 59.421 52.632 4.92 0.00 36.37 3.53
756 785 3.379445 GAGTCGGGCCGGACAGAA 61.379 66.667 36.25 1.38 39.42 3.02
757 786 2.920912 AGTCGGGCCGGACAGAAA 60.921 61.111 36.25 0.46 39.42 2.52
758 787 2.741211 GTCGGGCCGGACAGAAAC 60.741 66.667 32.14 11.29 36.91 2.78
759 788 4.367023 TCGGGCCGGACAGAAACG 62.367 66.667 27.98 1.06 0.00 3.60
760 789 4.367023 CGGGCCGGACAGAAACGA 62.367 66.667 20.56 0.00 0.00 3.85
761 790 2.031465 GGGCCGGACAGAAACGAA 59.969 61.111 11.00 0.00 0.00 3.85
762 791 2.322830 GGGCCGGACAGAAACGAAC 61.323 63.158 11.00 0.00 0.00 3.95
765 794 1.289800 GCCGGACAGAAACGAACCTC 61.290 60.000 5.05 0.00 0.00 3.85
768 797 1.000607 CGGACAGAAACGAACCTCTGA 60.001 52.381 6.10 0.00 41.38 3.27
771 800 1.344763 ACAGAAACGAACCTCTGAGGG 59.655 52.381 26.56 12.21 41.38 4.30
774 803 0.693049 AAACGAACCTCTGAGGGCAT 59.307 50.000 26.56 12.98 40.58 4.40
796 825 0.037419 TTGTCCGTTTAGGTACGCCC 60.037 55.000 0.00 0.00 40.10 6.13
820 849 2.931068 GCCCTGTTTCGCCCCAAAG 61.931 63.158 0.00 0.00 0.00 2.77
834 863 1.153168 CAAAGGGATGTCCGCGGAT 60.153 57.895 33.58 17.58 41.52 4.18
841 870 1.581934 GATGTCCGCGGATGATTTGA 58.418 50.000 33.58 9.71 0.00 2.69
843 872 0.461870 TGTCCGCGGATGATTTGAGG 60.462 55.000 33.58 0.00 0.00 3.86
844 873 0.462047 GTCCGCGGATGATTTGAGGT 60.462 55.000 33.58 0.00 0.00 3.85
849 879 0.527600 CGGATGATTTGAGGTCGCGA 60.528 55.000 3.71 3.71 0.00 5.87
879 909 1.521580 GCCTTAGATGCCATGAGAGC 58.478 55.000 0.00 0.00 0.00 4.09
881 911 2.301296 GCCTTAGATGCCATGAGAGCTA 59.699 50.000 0.00 0.00 0.00 3.32
882 912 3.055240 GCCTTAGATGCCATGAGAGCTAT 60.055 47.826 0.00 0.00 0.00 2.97
883 913 4.161189 GCCTTAGATGCCATGAGAGCTATA 59.839 45.833 0.00 0.00 0.00 1.31
888 918 9.228949 CTTAGATGCCATGAGAGCTATAAAAAT 57.771 33.333 0.00 0.00 0.00 1.82
946 976 2.003247 TCTACCCTCTTCCTCCCTCT 57.997 55.000 0.00 0.00 0.00 3.69
954 984 3.631087 CCTCTTCCTCCCTCTGTTATCCA 60.631 52.174 0.00 0.00 0.00 3.41
1108 1138 4.444081 CCTCCGTCTCCCCCTCGT 62.444 72.222 0.00 0.00 0.00 4.18
1158 1188 1.147153 CCCCAATCTTCTCGCCTCC 59.853 63.158 0.00 0.00 0.00 4.30
1160 1190 1.884926 CCAATCTTCTCGCCTCCGC 60.885 63.158 0.00 0.00 0.00 5.54
1399 1430 1.706305 CGGAGGGTCTCTCTAGGGTAT 59.294 57.143 0.00 0.00 42.10 2.73
1401 1432 2.521126 GAGGGTCTCTCTAGGGTATGC 58.479 57.143 0.00 0.00 39.38 3.14
1402 1433 1.860240 AGGGTCTCTCTAGGGTATGCA 59.140 52.381 0.00 0.00 0.00 3.96
1404 1435 2.667470 GGTCTCTCTAGGGTATGCACA 58.333 52.381 0.00 0.00 0.00 4.57
1455 1486 8.710835 TCTGTTTTGCTCGTTGTATTGATATA 57.289 30.769 0.00 0.00 0.00 0.86
1531 1562 4.131596 GGTGGTAGTTGACTAGTTTTGCA 58.868 43.478 0.00 0.00 0.00 4.08
1533 1564 5.240844 GGTGGTAGTTGACTAGTTTTGCATT 59.759 40.000 0.00 0.00 0.00 3.56
1554 1585 7.273188 CATTCTGTGCTTGTTCATGTAATTG 57.727 36.000 0.00 0.00 0.00 2.32
1593 1624 6.980593 TGAATTGACGGATGATTTTGAGTTT 58.019 32.000 0.00 0.00 0.00 2.66
1604 1635 7.332430 GGATGATTTTGAGTTTTGATGATTGCA 59.668 33.333 0.00 0.00 0.00 4.08
1632 1675 6.310941 AGTGCATCAGTGGTCTCTATATAGT 58.689 40.000 9.58 0.00 0.00 2.12
1633 1676 7.462590 AGTGCATCAGTGGTCTCTATATAGTA 58.537 38.462 9.58 0.00 0.00 1.82
1652 1695 7.749377 ATAGTATTTCGATGGATGGGGAATA 57.251 36.000 0.00 0.00 0.00 1.75
1655 1698 7.470192 AGTATTTCGATGGATGGGGAATATTT 58.530 34.615 0.00 0.00 0.00 1.40
1660 1703 6.711277 TCGATGGATGGGGAATATTTAGAAG 58.289 40.000 0.00 0.00 0.00 2.85
1672 1715 9.884465 GGGAATATTTAGAAGATGTTCATTTCG 57.116 33.333 5.28 0.00 34.82 3.46
1697 1741 7.850003 CGTAAATGAAATTGTTTGTGCACAAAT 59.150 29.630 39.08 26.83 41.08 2.32
1702 1746 6.370994 TGAAATTGTTTGTGCACAAATCAAGT 59.629 30.769 39.08 34.43 46.12 3.16
1705 1749 3.931468 TGTTTGTGCACAAATCAAGTTGG 59.069 39.130 39.08 0.00 46.12 3.77
1714 1758 3.068590 ACAAATCAAGTTGGGAGCTTGTG 59.931 43.478 2.34 0.36 42.67 3.33
1717 1761 0.588252 CAAGTTGGGAGCTTGTGTCG 59.412 55.000 0.00 0.00 38.68 4.35
1720 1764 0.034337 GTTGGGAGCTTGTGTCGGTA 59.966 55.000 0.00 0.00 0.00 4.02
1721 1765 0.034337 TTGGGAGCTTGTGTCGGTAC 59.966 55.000 0.00 0.00 0.00 3.34
1722 1766 1.116536 TGGGAGCTTGTGTCGGTACA 61.117 55.000 0.00 0.00 0.00 2.90
1723 1767 0.249398 GGGAGCTTGTGTCGGTACAT 59.751 55.000 0.00 0.00 38.08 2.29
1724 1768 1.641577 GGAGCTTGTGTCGGTACATC 58.358 55.000 0.00 0.00 38.08 3.06
1725 1769 1.067142 GGAGCTTGTGTCGGTACATCA 60.067 52.381 0.00 0.00 38.08 3.07
1726 1770 2.611971 GGAGCTTGTGTCGGTACATCAA 60.612 50.000 0.00 0.00 38.08 2.57
1727 1771 2.412089 GAGCTTGTGTCGGTACATCAAC 59.588 50.000 0.00 0.00 38.08 3.18
1728 1772 2.037251 AGCTTGTGTCGGTACATCAACT 59.963 45.455 0.00 0.00 38.08 3.16
1729 1773 3.257375 AGCTTGTGTCGGTACATCAACTA 59.743 43.478 0.00 0.00 38.08 2.24
1730 1774 4.081642 AGCTTGTGTCGGTACATCAACTAT 60.082 41.667 0.00 0.00 38.08 2.12
1731 1775 4.267928 GCTTGTGTCGGTACATCAACTATC 59.732 45.833 0.00 0.00 38.08 2.08
1732 1776 5.394224 TTGTGTCGGTACATCAACTATCA 57.606 39.130 0.00 0.00 38.08 2.15
1733 1777 5.394224 TGTGTCGGTACATCAACTATCAA 57.606 39.130 0.00 0.00 38.08 2.57
1734 1778 5.972935 TGTGTCGGTACATCAACTATCAAT 58.027 37.500 0.00 0.00 38.08 2.57
1735 1779 5.810074 TGTGTCGGTACATCAACTATCAATG 59.190 40.000 0.00 0.00 38.08 2.82
1736 1780 6.040247 GTGTCGGTACATCAACTATCAATGA 58.960 40.000 0.00 0.00 38.08 2.57
1737 1781 6.199154 GTGTCGGTACATCAACTATCAATGAG 59.801 42.308 0.00 0.00 38.08 2.90
1738 1782 6.096282 TGTCGGTACATCAACTATCAATGAGA 59.904 38.462 0.00 0.00 0.00 3.27
1739 1783 7.148641 GTCGGTACATCAACTATCAATGAGAT 58.851 38.462 0.00 0.00 40.86 2.75
1740 1784 8.297426 GTCGGTACATCAACTATCAATGAGATA 58.703 37.037 0.00 0.00 38.19 1.98
1741 1785 8.297426 TCGGTACATCAACTATCAATGAGATAC 58.703 37.037 0.00 0.00 38.19 2.24
1742 1786 7.542477 CGGTACATCAACTATCAATGAGATACC 59.458 40.741 0.00 0.00 38.19 2.73
1743 1787 7.819900 GGTACATCAACTATCAATGAGATACCC 59.180 40.741 0.00 0.00 38.19 3.69
1744 1788 6.773638 ACATCAACTATCAATGAGATACCCC 58.226 40.000 0.00 0.00 38.19 4.95
1745 1789 6.560304 ACATCAACTATCAATGAGATACCCCT 59.440 38.462 0.00 0.00 38.19 4.79
1746 1790 7.734865 ACATCAACTATCAATGAGATACCCCTA 59.265 37.037 0.00 0.00 38.19 3.53
1747 1791 8.597167 CATCAACTATCAATGAGATACCCCTAA 58.403 37.037 0.00 0.00 38.19 2.69
1748 1792 8.561536 TCAACTATCAATGAGATACCCCTAAA 57.438 34.615 0.00 0.00 38.19 1.85
1749 1793 8.998814 TCAACTATCAATGAGATACCCCTAAAA 58.001 33.333 0.00 0.00 38.19 1.52
1750 1794 9.627123 CAACTATCAATGAGATACCCCTAAAAA 57.373 33.333 0.00 0.00 38.19 1.94
1787 2278 8.757982 AGATGCCTCATTTGTTATTGTTCTAT 57.242 30.769 0.00 0.00 0.00 1.98
1791 2282 9.851686 TGCCTCATTTGTTATTGTTCTATCTAT 57.148 29.630 0.00 0.00 0.00 1.98
1858 2350 0.459489 TTTGCTGTGGTTTGCTGGAC 59.541 50.000 0.00 0.00 0.00 4.02
1890 2382 8.111545 TGTTCCCTTAAGTATCACAGTCTACTA 58.888 37.037 0.97 0.00 0.00 1.82
1944 2436 1.949465 CTACCAGGGCACGTATTTCC 58.051 55.000 0.00 0.00 0.00 3.13
2038 2530 7.934120 ACATATGGAATGCTTTAGTAAGACCTC 59.066 37.037 7.80 0.00 32.92 3.85
2074 2567 0.604073 TGACTAATCCGTTGCACCGA 59.396 50.000 4.75 0.00 0.00 4.69
2076 2569 0.606604 ACTAATCCGTTGCACCGACT 59.393 50.000 4.75 0.00 0.00 4.18
2250 2743 3.067461 CCAGGAGGAGATGTAAGAACTCG 59.933 52.174 0.00 0.00 36.89 4.18
2430 2924 1.772819 CGGATCTAAGGGGCTGCCAT 61.773 60.000 22.05 8.55 0.00 4.40
2493 2987 8.709386 ACTTTAGTATCTTGTGCTGAGTTATG 57.291 34.615 0.00 0.00 0.00 1.90
2508 3002 6.684111 GCTGAGTTATGTATGCTGTCCTACTT 60.684 42.308 0.00 0.00 0.00 2.24
2531 3025 4.130286 TGTGGGACAAAATCACAAAACC 57.870 40.909 0.00 0.00 44.44 3.27
2532 3026 3.515502 TGTGGGACAAAATCACAAAACCA 59.484 39.130 0.00 0.00 44.44 3.67
2533 3027 4.119136 GTGGGACAAAATCACAAAACCAG 58.881 43.478 0.00 0.00 44.44 4.00
2534 3028 3.772025 TGGGACAAAATCACAAAACCAGT 59.228 39.130 0.00 0.00 37.99 4.00
2535 3029 4.119136 GGGACAAAATCACAAAACCAGTG 58.881 43.478 0.00 0.00 38.32 3.66
2536 3030 3.555547 GGACAAAATCACAAAACCAGTGC 59.444 43.478 0.00 0.00 36.93 4.40
2537 3031 4.180057 GACAAAATCACAAAACCAGTGCA 58.820 39.130 0.00 0.00 36.93 4.57
2545 3039 5.059833 TCACAAAACCAGTGCAAAAACTTT 58.940 33.333 0.00 0.00 36.93 2.66
2595 3094 9.844257 AGGAAAGAGAGGATTTATTCTATTGTG 57.156 33.333 0.00 0.00 0.00 3.33
2671 3170 9.326413 TGTAGTAGCTCTAATTATTTGGAAAGC 57.674 33.333 0.00 0.00 0.00 3.51
2682 3181 6.916360 TTATTTGGAAAGCTCACTGGAAAT 57.084 33.333 0.00 0.00 0.00 2.17
2690 3189 6.016276 GGAAAGCTCACTGGAAATTGAAGTTA 60.016 38.462 0.00 0.00 0.00 2.24
2691 3190 7.309438 GGAAAGCTCACTGGAAATTGAAGTTAT 60.309 37.037 0.00 0.00 0.00 1.89
2695 3194 7.550906 AGCTCACTGGAAATTGAAGTTATCTAC 59.449 37.037 0.00 0.00 0.00 2.59
2715 3214 1.825191 GATCGGTGTGGGCATGCAT 60.825 57.895 21.36 0.63 0.00 3.96
2724 3223 3.618150 GTGTGGGCATGCATCATTTTAAC 59.382 43.478 21.36 4.91 0.00 2.01
2725 3224 3.260128 TGTGGGCATGCATCATTTTAACA 59.740 39.130 21.36 7.36 0.00 2.41
2729 3228 4.273969 GGGCATGCATCATTTTAACAATGG 59.726 41.667 21.36 0.00 0.00 3.16
2737 3236 6.550843 CATCATTTTAACAATGGCGAGTACA 58.449 36.000 0.00 0.00 0.00 2.90
2738 3237 6.751514 TCATTTTAACAATGGCGAGTACAT 57.248 33.333 0.00 0.00 0.00 2.29
2745 3244 6.942532 AACAATGGCGAGTACATTTGATAT 57.057 33.333 0.00 0.00 36.47 1.63
2746 3245 6.304356 ACAATGGCGAGTACATTTGATATG 57.696 37.500 0.00 0.00 36.47 1.78
2747 3246 5.239306 ACAATGGCGAGTACATTTGATATGG 59.761 40.000 0.00 0.00 36.47 2.74
2755 3254 7.850982 GCGAGTACATTTGATATGGTAAAACTG 59.149 37.037 0.00 0.00 0.00 3.16
2785 3284 9.457436 TGTCCCAATAGTTTATCTTAAAAGGAC 57.543 33.333 0.00 0.00 38.38 3.85
2786 3285 9.457436 GTCCCAATAGTTTATCTTAAAAGGACA 57.543 33.333 0.00 0.00 37.92 4.02
2802 3301 4.993705 AGGACAAAACTGGGATGAACTA 57.006 40.909 0.00 0.00 0.00 2.24
2844 3343 6.153851 TGCCAATGCTACTCTGTAGTTTAGTA 59.846 38.462 6.60 0.00 38.71 1.82
2852 3351 8.476447 GCTACTCTGTAGTTTAGTAAGGGATTT 58.524 37.037 6.60 0.00 37.15 2.17
2895 3394 1.278985 TGAGTTGGGTATGCTGTCCTG 59.721 52.381 0.00 0.00 0.00 3.86
2993 3492 7.308450 TCTCTATTGTGATAATCTTGGGAGG 57.692 40.000 0.00 0.00 0.00 4.30
2997 3496 3.889815 TGTGATAATCTTGGGAGGCAAG 58.110 45.455 0.00 0.00 0.00 4.01
3013 3512 2.286654 GGCAAGATTAAGCGATGTCAGC 60.287 50.000 0.00 0.00 0.00 4.26
3186 3686 4.393062 CAGTGTACCTTATGGCTTGTGAAG 59.607 45.833 0.00 0.00 36.63 3.02
3209 3709 7.076842 AGATATGTTTGTTTCGATGTTCCAG 57.923 36.000 0.00 0.00 0.00 3.86
3232 3732 6.016276 CAGAATGGGTACAAAGCTACAAAAGT 60.016 38.462 0.00 0.00 0.00 2.66
3238 3738 5.526111 GGTACAAAGCTACAAAAGTGTCTCA 59.474 40.000 0.00 0.00 39.30 3.27
3239 3739 6.204882 GGTACAAAGCTACAAAAGTGTCTCAT 59.795 38.462 0.00 0.00 39.30 2.90
3241 3741 5.050091 ACAAAGCTACAAAAGTGTCTCATCG 60.050 40.000 0.00 0.00 39.30 3.84
3262 3762 8.683615 TCATCGAAGAAATACTCTTAGCTAACA 58.316 33.333 0.86 0.00 44.82 2.41
3292 3792 4.101741 TGCCTAGGAGAGCCTTTCTAATTC 59.898 45.833 14.75 0.00 43.90 2.17
3633 4134 5.215239 GCAGAAGCTTACTGATCAGTTTC 57.785 43.478 32.14 26.39 39.18 2.78
3638 4139 7.600375 CAGAAGCTTACTGATCAGTTTCTTGTA 59.400 37.037 32.14 10.85 42.54 2.41
3647 4149 7.039714 ACTGATCAGTTTCTTGTAAAAATCCCC 60.040 37.037 22.89 0.00 38.83 4.81
3679 4181 9.113876 GTACAGTTATTGTTGTTATTGCTGAAC 57.886 33.333 0.00 0.00 41.29 3.18
3683 4185 4.645762 TTGTTGTTATTGCTGAACTGCA 57.354 36.364 2.46 2.46 41.65 4.41
3690 4192 5.353956 TGTTATTGCTGAACTGCATTATCGT 59.646 36.000 7.15 0.00 42.96 3.73
3697 4199 5.725042 GCTGAACTGCATTATCGTACACTTG 60.725 44.000 0.00 0.00 0.00 3.16
3728 4230 7.671302 TCCTACAGGCTGATGATATAGAAAAC 58.329 38.462 23.66 0.00 34.44 2.43
3731 4233 6.219473 ACAGGCTGATGATATAGAAAACGAG 58.781 40.000 23.66 0.00 0.00 4.18
3749 4251 4.539870 ACGAGTCAAACGAACTTAATCGA 58.460 39.130 5.52 0.00 45.48 3.59
3823 4325 5.186996 GAAAAGGTCAGCATTTTCTGTCA 57.813 39.130 9.33 0.00 46.03 3.58
3862 4364 1.833630 TCCCTCATCACCTGCAGTTAG 59.166 52.381 13.81 0.00 0.00 2.34
3884 4386 8.913656 GTTAGTACTTAGCTTTCAGTTACTGTG 58.086 37.037 12.41 5.50 32.61 3.66
3919 4421 1.196127 CGTTTCCCGCTTACTTTCACC 59.804 52.381 0.00 0.00 0.00 4.02
3924 4426 1.164411 CCGCTTACTTTCACCATGCA 58.836 50.000 0.00 0.00 0.00 3.96
3941 4443 5.300286 ACCATGCATAACTAGGCTTTGATTC 59.700 40.000 0.00 0.00 33.54 2.52
3955 4458 4.608882 GCTTTGATTCGTTCTGTTTTCTCG 59.391 41.667 0.00 0.00 0.00 4.04
3964 4468 7.909777 TCGTTCTGTTTTCTCGTATATCATC 57.090 36.000 0.00 0.00 0.00 2.92
3967 4471 7.435488 CGTTCTGTTTTCTCGTATATCATCCTT 59.565 37.037 0.00 0.00 0.00 3.36
3994 4498 7.088589 AGGAAAAATCTGATGTGAAATACCG 57.911 36.000 0.00 0.00 0.00 4.02
3997 4501 7.908601 GGAAAAATCTGATGTGAAATACCGTAC 59.091 37.037 0.00 0.00 0.00 3.67
3999 4503 7.539712 AAATCTGATGTGAAATACCGTACTG 57.460 36.000 0.00 0.00 0.00 2.74
4014 4518 3.492137 CCGTACTGCCACTTTCCCTATAC 60.492 52.174 0.00 0.00 0.00 1.47
4020 4524 1.209128 CACTTTCCCTATACGCGCAG 58.791 55.000 5.73 2.42 0.00 5.18
4038 4542 5.104562 CGCAGCATTTATCATGATTCAGT 57.895 39.130 14.65 0.00 0.00 3.41
4039 4543 5.516996 CGCAGCATTTATCATGATTCAGTT 58.483 37.500 14.65 0.00 0.00 3.16
4040 4544 6.661669 CGCAGCATTTATCATGATTCAGTTA 58.338 36.000 14.65 0.00 0.00 2.24
4041 4545 6.576313 CGCAGCATTTATCATGATTCAGTTAC 59.424 38.462 14.65 0.00 0.00 2.50
4042 4546 7.519488 CGCAGCATTTATCATGATTCAGTTACT 60.519 37.037 14.65 0.87 0.00 2.24
4054 4558 7.113658 TGATTCAGTTACTAGGTTGATCTCC 57.886 40.000 0.00 0.00 0.00 3.71
4056 4560 3.380637 TCAGTTACTAGGTTGATCTCCGC 59.619 47.826 0.00 0.00 0.00 5.54
4057 4561 2.358267 AGTTACTAGGTTGATCTCCGCG 59.642 50.000 0.00 0.00 0.00 6.46
4059 4563 1.471119 ACTAGGTTGATCTCCGCGAA 58.529 50.000 8.23 0.00 0.00 4.70
4061 4565 2.223829 ACTAGGTTGATCTCCGCGAATG 60.224 50.000 8.23 0.00 0.00 2.67
4062 4566 0.811616 AGGTTGATCTCCGCGAATGC 60.812 55.000 8.23 0.00 37.91 3.56
4087 4591 2.289569 CCTAGCTGCATTCCTCTCATCC 60.290 54.545 1.02 0.00 0.00 3.51
4088 4592 0.106335 AGCTGCATTCCTCTCATCCG 59.894 55.000 1.02 0.00 0.00 4.18
4093 4597 2.208431 GCATTCCTCTCATCCGAAGTG 58.792 52.381 0.00 0.00 0.00 3.16
4095 4599 3.452474 CATTCCTCTCATCCGAAGTGTC 58.548 50.000 0.00 0.00 0.00 3.67
4097 4601 3.646736 TCCTCTCATCCGAAGTGTCTA 57.353 47.619 0.00 0.00 0.00 2.59
4099 4603 3.054287 TCCTCTCATCCGAAGTGTCTACT 60.054 47.826 0.00 0.00 39.32 2.57
4100 4604 3.314080 CCTCTCATCCGAAGTGTCTACTC 59.686 52.174 0.00 0.00 35.69 2.59
4119 4629 1.980765 TCTTGCAGGTTCATGAGGACT 59.019 47.619 0.00 0.00 0.00 3.85
4121 4631 2.189594 TGCAGGTTCATGAGGACTTG 57.810 50.000 5.51 5.51 0.00 3.16
4265 4775 0.962489 ATCTGGGACTCGGCTAATCG 59.038 55.000 0.00 0.00 0.00 3.34
4273 4784 3.004524 GGACTCGGCTAATCGTAGATGTT 59.995 47.826 0.00 0.00 45.12 2.71
4292 4803 1.956629 TAGCGCACCAGAGTTAGCCC 61.957 60.000 11.47 0.00 0.00 5.19
4307 4818 0.838122 AGCCCTAGACTGCCACAGTT 60.838 55.000 1.15 0.00 45.44 3.16
4308 4819 0.036875 GCCCTAGACTGCCACAGTTT 59.963 55.000 1.15 0.00 45.44 2.66
4309 4820 1.545651 GCCCTAGACTGCCACAGTTTT 60.546 52.381 1.15 0.00 45.44 2.43
4310 4821 2.863809 CCCTAGACTGCCACAGTTTTT 58.136 47.619 1.15 0.00 45.44 1.94
4311 4822 2.554032 CCCTAGACTGCCACAGTTTTTG 59.446 50.000 1.15 0.00 45.44 2.44
4312 4823 3.476552 CCTAGACTGCCACAGTTTTTGA 58.523 45.455 1.15 0.00 45.44 2.69
4313 4824 3.882888 CCTAGACTGCCACAGTTTTTGAA 59.117 43.478 1.15 0.00 45.44 2.69
4336 4856 5.744666 TTTTTCCACGTCTTCGAAATCTT 57.255 34.783 0.00 0.00 40.62 2.40
4348 4868 2.736721 TCGAAATCTTGACGCTTCCTTG 59.263 45.455 0.00 0.00 0.00 3.61
4352 4872 1.896220 TCTTGACGCTTCCTTGCATT 58.104 45.000 0.00 0.00 0.00 3.56
4356 4876 0.169009 GACGCTTCCTTGCATTGGTC 59.831 55.000 6.22 0.00 0.00 4.02
4361 4881 2.173519 CTTCCTTGCATTGGTCCATGT 58.826 47.619 0.00 0.00 0.00 3.21
4399 4939 0.174845 TTGTTCTCTCCGGTATGCGG 59.825 55.000 0.00 0.00 0.00 5.69
4426 4966 1.972660 AAGAGGTGATAGGCGGTGGC 61.973 60.000 0.00 0.00 38.90 5.01
4427 4967 2.365635 AGGTGATAGGCGGTGGCT 60.366 61.111 0.00 0.00 42.39 4.75
4435 4975 2.614829 TAGGCGGTGGCTATCTTTTC 57.385 50.000 0.00 0.00 39.70 2.29
4446 4987 6.127842 GGTGGCTATCTTTTCCGTTTTTCATA 60.128 38.462 0.00 0.00 0.00 2.15
4453 4994 4.571372 TTTCCGTTTTTCATACACACCC 57.429 40.909 0.00 0.00 0.00 4.61
4507 5048 4.554973 GCGACATTAATGTTCTTGTTGAGC 59.445 41.667 21.63 11.93 41.95 4.26
4570 5122 5.975693 TTTTTGCGGGAATTTCTGATAGT 57.024 34.783 0.00 0.00 0.00 2.12
4571 5123 4.963276 TTTGCGGGAATTTCTGATAGTG 57.037 40.909 0.00 0.00 0.00 2.74
4616 5168 5.659079 TCCTTATCTTCTCTTCAGGAAGGTC 59.341 44.000 9.03 0.00 40.17 3.85
4864 5416 5.051508 GCGCCAATGATTGAAATGATTGTAC 60.052 40.000 6.76 5.45 38.02 2.90
4865 5417 6.267817 CGCCAATGATTGAAATGATTGTACT 58.732 36.000 6.76 0.00 38.02 2.73
4866 5418 7.416817 CGCCAATGATTGAAATGATTGTACTA 58.583 34.615 6.76 0.00 38.02 1.82
4867 5419 7.588854 CGCCAATGATTGAAATGATTGTACTAG 59.411 37.037 6.76 0.00 38.02 2.57
4868 5420 8.408601 GCCAATGATTGAAATGATTGTACTAGT 58.591 33.333 6.76 0.00 38.02 2.57
4927 5483 1.302832 GGAGGGCTATCATTGGGCG 60.303 63.158 0.00 0.00 0.00 6.13
4954 5514 4.729856 GCGGCAAGGCAAGGCAAG 62.730 66.667 0.00 0.00 0.00 4.01
4955 5515 4.060038 CGGCAAGGCAAGGCAAGG 62.060 66.667 0.00 0.00 0.00 3.61
4956 5516 4.383861 GGCAAGGCAAGGCAAGGC 62.384 66.667 0.00 0.00 0.00 4.35
5037 5597 6.555812 ACGCGTAGAATAAGTAGATGATGA 57.444 37.500 11.67 0.00 0.00 2.92
5038 5598 7.147143 ACGCGTAGAATAAGTAGATGATGAT 57.853 36.000 11.67 0.00 0.00 2.45
5039 5599 7.024171 ACGCGTAGAATAAGTAGATGATGATG 58.976 38.462 11.67 0.00 0.00 3.07
5126 5690 9.438228 TCAGATAGATGTACGTATAGAAGGAAG 57.562 37.037 0.00 0.00 0.00 3.46
5131 5695 5.196341 TGTACGTATAGAAGGAAGCATGG 57.804 43.478 0.00 0.00 0.00 3.66
5132 5696 3.113260 ACGTATAGAAGGAAGCATGGC 57.887 47.619 0.00 0.00 0.00 4.40
5143 5707 1.931172 GAAGCATGGCATTGCAATCAC 59.069 47.619 9.53 5.94 45.23 3.06
5169 5736 5.735285 TGATTGGCATGTCCTCTAGATAG 57.265 43.478 0.00 0.00 35.26 2.08
5170 5737 5.150715 TGATTGGCATGTCCTCTAGATAGT 58.849 41.667 0.00 0.00 35.26 2.12
5171 5738 5.244851 TGATTGGCATGTCCTCTAGATAGTC 59.755 44.000 0.00 0.00 35.26 2.59
5209 5776 1.302832 GTGCCTGTCACAGAAGGGG 60.303 63.158 6.30 0.00 44.98 4.79
5210 5777 1.770110 TGCCTGTCACAGAAGGGGT 60.770 57.895 6.30 0.00 32.44 4.95
5211 5778 1.302832 GCCTGTCACAGAAGGGGTG 60.303 63.158 6.30 0.00 37.60 4.61
5212 5779 1.302832 CCTGTCACAGAAGGGGTGC 60.303 63.158 6.30 0.00 36.22 5.01
5214 5781 2.358737 GTCACAGAAGGGGTGCGG 60.359 66.667 0.00 0.00 36.22 5.69
5215 5782 2.847234 TCACAGAAGGGGTGCGGT 60.847 61.111 0.00 0.00 36.22 5.68
5216 5783 2.113139 CACAGAAGGGGTGCGGTT 59.887 61.111 0.00 0.00 0.00 4.44
5218 5785 2.742372 CAGAAGGGGTGCGGTTCG 60.742 66.667 0.00 0.00 0.00 3.95
5219 5786 4.016706 AGAAGGGGTGCGGTTCGG 62.017 66.667 0.00 0.00 0.00 4.30
5237 5804 1.448497 GGTGACGGGGTGAGAAACA 59.552 57.895 0.00 0.00 0.00 2.83
5271 5838 4.530857 GGCAGTCCGACGGATGGG 62.531 72.222 21.53 13.41 32.73 4.00
5273 5840 4.873129 CAGTCCGACGGATGGGCG 62.873 72.222 21.53 3.29 35.82 6.13
5290 5857 3.986006 GGACGGACGTGGCTGTGA 61.986 66.667 0.53 0.00 0.00 3.58
5291 5858 2.733593 GACGGACGTGGCTGTGAC 60.734 66.667 0.53 0.00 0.00 3.67
5292 5859 3.208884 GACGGACGTGGCTGTGACT 62.209 63.158 0.53 0.00 0.00 3.41
5293 5860 2.734723 CGGACGTGGCTGTGACTG 60.735 66.667 0.00 0.00 0.00 3.51
5294 5861 2.421739 GGACGTGGCTGTGACTGT 59.578 61.111 0.00 0.00 0.00 3.55
5295 5862 1.956170 GGACGTGGCTGTGACTGTG 60.956 63.158 0.00 0.00 0.00 3.66
5298 5865 2.313172 CGTGGCTGTGACTGTGAGC 61.313 63.158 0.00 0.00 0.00 4.26
5300 5867 2.359230 GGCTGTGACTGTGAGCCC 60.359 66.667 9.83 0.00 45.69 5.19
5301 5868 2.740055 GCTGTGACTGTGAGCCCG 60.740 66.667 0.00 0.00 0.00 6.13
5302 5869 2.740055 CTGTGACTGTGAGCCCGC 60.740 66.667 0.00 0.00 0.00 6.13
5305 5872 4.662961 TGACTGTGAGCCCGCACG 62.663 66.667 0.00 0.00 41.63 5.34
5306 5873 4.664677 GACTGTGAGCCCGCACGT 62.665 66.667 0.00 0.00 41.63 4.49
5307 5874 3.277211 GACTGTGAGCCCGCACGTA 62.277 63.158 0.00 0.00 41.63 3.57
5310 5877 2.048503 GTGAGCCCGCACGTACTT 60.049 61.111 0.00 0.00 0.00 2.24
5311 5878 1.213537 GTGAGCCCGCACGTACTTA 59.786 57.895 0.00 0.00 0.00 2.24
5312 5879 0.179119 GTGAGCCCGCACGTACTTAT 60.179 55.000 0.00 0.00 0.00 1.73
5314 5881 1.750206 TGAGCCCGCACGTACTTATTA 59.250 47.619 0.00 0.00 0.00 0.98
5316 5883 2.985139 GAGCCCGCACGTACTTATTATC 59.015 50.000 0.00 0.00 0.00 1.75
5317 5884 2.626743 AGCCCGCACGTACTTATTATCT 59.373 45.455 0.00 0.00 0.00 1.98
5318 5885 2.729882 GCCCGCACGTACTTATTATCTG 59.270 50.000 0.00 0.00 0.00 2.90
5319 5886 3.314553 CCCGCACGTACTTATTATCTGG 58.685 50.000 0.00 0.00 0.00 3.86
5320 5887 2.729882 CCGCACGTACTTATTATCTGGC 59.270 50.000 0.00 0.00 0.00 4.85
5321 5888 3.377439 CGCACGTACTTATTATCTGGCA 58.623 45.455 0.00 0.00 0.00 4.92
5322 5889 3.181774 CGCACGTACTTATTATCTGGCAC 59.818 47.826 0.00 0.00 0.00 5.01
5323 5890 3.493503 GCACGTACTTATTATCTGGCACC 59.506 47.826 0.00 0.00 0.00 5.01
5324 5891 4.056050 CACGTACTTATTATCTGGCACCC 58.944 47.826 0.00 0.00 0.00 4.61
5345 5992 0.734889 CCCAAGATGACATGGAACGC 59.265 55.000 0.00 0.00 37.08 4.84
5366 6013 3.181967 GCGTAGTGCGTGCAGAGG 61.182 66.667 1.76 0.00 43.66 3.69
5374 6021 2.734673 GCGTGCAGAGGAAGAAGCG 61.735 63.158 0.00 0.00 0.00 4.68
5440 6102 3.803162 GGCCTGGGAGGGAGCTTC 61.803 72.222 0.00 0.00 35.37 3.86
5441 6103 3.803162 GCCTGGGAGGGAGCTTCC 61.803 72.222 1.27 1.27 35.37 3.46
5442 6104 2.041928 CCTGGGAGGGAGCTTCCT 59.958 66.667 15.58 15.58 40.43 3.36
5444 6106 1.606531 CTGGGAGGGAGCTTCCTTG 59.393 63.158 16.96 2.39 37.25 3.61
5446 6108 2.273776 GGAGGGAGCTTCCTTGGC 59.726 66.667 16.96 1.67 37.25 4.52
5447 6109 2.124942 GAGGGAGCTTCCTTGGCG 60.125 66.667 16.96 0.00 37.25 5.69
5449 6111 4.722700 GGGAGCTTCCTTGGCGCA 62.723 66.667 10.83 0.00 36.57 6.09
5451 6113 3.130160 GAGCTTCCTTGGCGCAGG 61.130 66.667 10.83 8.91 34.86 4.85
5452 6114 3.909086 GAGCTTCCTTGGCGCAGGT 62.909 63.158 10.83 1.21 35.15 4.00
5453 6115 3.435186 GCTTCCTTGGCGCAGGTC 61.435 66.667 10.83 0.00 35.15 3.85
5455 6117 4.697756 TTCCTTGGCGCAGGTCGG 62.698 66.667 10.83 1.51 38.94 4.79
5501 6181 4.235762 CCGGGCCGGTGATACCTG 62.236 72.222 36.52 7.82 42.73 4.00
5515 6195 0.038251 TACCTGCATGGATCGATCGC 60.038 55.000 18.81 16.48 39.71 4.58
5549 6242 3.127533 GCCAGTCGCCGCAGAAAT 61.128 61.111 0.00 0.00 0.00 2.17
5552 6245 0.240945 CCAGTCGCCGCAGAAATTTT 59.759 50.000 0.00 0.00 0.00 1.82
5554 6247 0.165944 AGTCGCCGCAGAAATTTTCG 59.834 50.000 3.57 0.00 34.02 3.46
5555 6248 1.154301 TCGCCGCAGAAATTTTCGC 60.154 52.632 12.75 12.75 34.02 4.70
5574 6268 0.387202 CAGAGGTAGACGGATGGCAG 59.613 60.000 0.00 0.00 0.00 4.85
5576 6270 1.676678 GAGGTAGACGGATGGCAGCA 61.677 60.000 4.64 0.00 0.00 4.41
5577 6271 1.050988 AGGTAGACGGATGGCAGCAT 61.051 55.000 4.64 0.00 0.00 3.79
5578 6272 0.882042 GGTAGACGGATGGCAGCATG 60.882 60.000 4.64 0.00 40.87 4.06
5579 6273 0.882042 GTAGACGGATGGCAGCATGG 60.882 60.000 4.64 0.00 35.86 3.66
5581 6275 3.704231 GACGGATGGCAGCATGGGT 62.704 63.158 4.64 0.00 35.86 4.51
5582 6276 2.903855 CGGATGGCAGCATGGGTC 60.904 66.667 4.64 0.00 35.86 4.46
5583 6277 2.903855 GGATGGCAGCATGGGTCG 60.904 66.667 4.64 0.00 35.86 4.79
5584 6278 2.124570 GATGGCAGCATGGGTCGT 60.125 61.111 0.00 0.00 35.86 4.34
5585 6279 2.438975 ATGGCAGCATGGGTCGTG 60.439 61.111 0.00 0.00 35.86 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.754226 GAAGACACAACTTGGGCCAAA 59.246 47.619 21.28 0.00 0.00 3.28
56 57 7.118680 GGAGTCCAAACACATCGAAACTATTTA 59.881 37.037 3.60 0.00 0.00 1.40
68 69 1.953686 CCAAACGGAGTCCAAACACAT 59.046 47.619 10.49 0.00 45.00 3.21
71 72 3.495434 ATACCAAACGGAGTCCAAACA 57.505 42.857 10.49 0.00 45.00 2.83
124 126 0.250295 GTGCCCAGTGTCAGTTGCTA 60.250 55.000 0.00 0.00 0.00 3.49
133 135 3.774766 TCTAATGACATAGTGCCCAGTGT 59.225 43.478 0.00 0.00 0.00 3.55
253 255 3.369385 CGCGGTTTGATACGTCTCTAAT 58.631 45.455 0.00 0.00 0.00 1.73
256 258 0.801067 GCGCGGTTTGATACGTCTCT 60.801 55.000 8.83 0.00 0.00 3.10
259 261 2.699212 GGCGCGGTTTGATACGTC 59.301 61.111 8.83 0.00 0.00 4.34
318 320 3.391382 GCGGCAGGAGTAGGGTGT 61.391 66.667 0.00 0.00 0.00 4.16
343 345 0.038251 TTGTAGCTCTCACCACGCAG 60.038 55.000 0.00 0.00 0.00 5.18
348 350 0.037326 CGCCTTTGTAGCTCTCACCA 60.037 55.000 0.00 0.00 0.00 4.17
362 364 1.074167 ATGGATCCTCCTCCGCCTT 60.074 57.895 14.23 0.00 38.21 4.35
363 365 1.840650 CATGGATCCTCCTCCGCCT 60.841 63.158 14.23 0.00 38.21 5.52
409 411 4.824515 CCCCTCCTCGCCGACTCT 62.825 72.222 0.00 0.00 0.00 3.24
483 485 2.159043 CCGCCACTTGATCTACTGATGT 60.159 50.000 0.00 0.00 32.19 3.06
486 488 0.175760 GCCGCCACTTGATCTACTGA 59.824 55.000 0.00 0.00 0.00 3.41
507 509 1.226974 CACCAGTCGTCCCATAGCG 60.227 63.158 0.00 0.00 0.00 4.26
512 514 3.311110 GCTCCACCAGTCGTCCCA 61.311 66.667 0.00 0.00 0.00 4.37
543 545 4.474846 CCGTGCGGCCCAAAATCG 62.475 66.667 0.00 0.00 0.00 3.34
568 570 2.202272 GTCGTCTCGTAGCGCGTT 60.202 61.111 8.43 3.54 42.13 4.84
579 581 1.228583 TGTCCTCTGCCAGTCGTCT 60.229 57.895 0.00 0.00 0.00 4.18
664 666 7.990886 ACCACATATCGGTGACTACAATAAAAT 59.009 33.333 0.00 0.00 41.32 1.82
665 667 7.332557 ACCACATATCGGTGACTACAATAAAA 58.667 34.615 0.00 0.00 41.32 1.52
680 682 0.108396 TGCCCATGGACCACATATCG 59.892 55.000 15.22 0.00 37.84 2.92
694 696 1.375396 CGGACGAAACATCTGCCCA 60.375 57.895 0.00 0.00 0.00 5.36
699 701 3.057734 GTCTGAAACGGACGAAACATCT 58.942 45.455 0.00 0.00 29.77 2.90
739 768 2.939261 TTTCTGTCCGGCCCGACTC 61.939 63.158 22.34 0.69 33.70 3.36
740 769 2.920912 TTTCTGTCCGGCCCGACT 60.921 61.111 22.34 0.00 33.70 4.18
753 782 0.321996 GCCCTCAGAGGTTCGTTTCT 59.678 55.000 15.86 0.00 31.93 2.52
754 783 0.034896 TGCCCTCAGAGGTTCGTTTC 59.965 55.000 15.86 0.00 31.93 2.78
755 784 0.693049 ATGCCCTCAGAGGTTCGTTT 59.307 50.000 15.86 0.00 31.93 3.60
756 785 0.250513 GATGCCCTCAGAGGTTCGTT 59.749 55.000 15.86 0.00 31.93 3.85
757 786 0.616111 AGATGCCCTCAGAGGTTCGT 60.616 55.000 15.86 7.94 31.93 3.85
758 787 0.539051 AAGATGCCCTCAGAGGTTCG 59.461 55.000 15.86 1.17 31.93 3.95
759 788 2.290577 ACAAAGATGCCCTCAGAGGTTC 60.291 50.000 15.86 9.12 31.93 3.62
760 789 1.707427 ACAAAGATGCCCTCAGAGGTT 59.293 47.619 15.86 0.00 31.93 3.50
761 790 1.280421 GACAAAGATGCCCTCAGAGGT 59.720 52.381 15.86 0.00 31.93 3.85
762 791 1.407989 GGACAAAGATGCCCTCAGAGG 60.408 57.143 9.90 9.90 34.30 3.69
765 794 0.036010 ACGGACAAAGATGCCCTCAG 60.036 55.000 0.00 0.00 0.00 3.35
768 797 2.618045 CCTAAACGGACAAAGATGCCCT 60.618 50.000 0.00 0.00 33.16 5.19
771 800 3.061697 CGTACCTAAACGGACAAAGATGC 59.938 47.826 0.00 0.00 39.19 3.91
774 803 2.610232 GGCGTACCTAAACGGACAAAGA 60.610 50.000 0.00 0.00 43.06 2.52
796 825 4.038080 GCGAAACAGGGCCCAACG 62.038 66.667 27.56 21.11 0.00 4.10
820 849 0.535102 AAATCATCCGCGGACATCCC 60.535 55.000 33.75 0.00 0.00 3.85
834 863 0.389817 CACCTCGCGACCTCAAATCA 60.390 55.000 3.71 0.00 0.00 2.57
841 870 2.600769 AACTCCACCTCGCGACCT 60.601 61.111 3.71 0.00 0.00 3.85
843 872 2.432628 CCAACTCCACCTCGCGAC 60.433 66.667 3.71 0.00 0.00 5.19
844 873 4.373116 GCCAACTCCACCTCGCGA 62.373 66.667 9.26 9.26 0.00 5.87
849 879 1.561542 CATCTAAGGCCAACTCCACCT 59.438 52.381 5.01 0.00 34.45 4.00
878 908 8.564574 TCCCGATCAAACACATATTTTTATAGC 58.435 33.333 0.00 0.00 0.00 2.97
881 911 7.470009 GCCTCCCGATCAAACACATATTTTTAT 60.470 37.037 0.00 0.00 0.00 1.40
882 912 6.183360 GCCTCCCGATCAAACACATATTTTTA 60.183 38.462 0.00 0.00 0.00 1.52
883 913 5.394115 GCCTCCCGATCAAACACATATTTTT 60.394 40.000 0.00 0.00 0.00 1.94
888 918 1.472552 CGCCTCCCGATCAAACACATA 60.473 52.381 0.00 0.00 40.02 2.29
901 931 2.125106 AAGATTCGTGCGCCTCCC 60.125 61.111 4.18 0.00 0.00 4.30
946 976 1.280710 ACAGTGGCGGAATGGATAACA 59.719 47.619 0.00 0.00 0.00 2.41
954 984 0.321653 GGAGTGAACAGTGGCGGAAT 60.322 55.000 0.00 0.00 0.00 3.01
1116 1146 1.001641 CAGCCAGGGTTTCAGGAGG 60.002 63.158 0.00 0.00 0.00 4.30
1158 1188 1.298859 CGAAAGGGGAAACAGAGGCG 61.299 60.000 0.00 0.00 0.00 5.52
1160 1190 0.250727 TGCGAAAGGGGAAACAGAGG 60.251 55.000 0.00 0.00 0.00 3.69
1418 1449 2.223044 GCAAAACAGAGGCTACGCATAC 60.223 50.000 0.00 0.00 0.00 2.39
1455 1486 1.176527 GCAGCACCACACCACATATT 58.823 50.000 0.00 0.00 0.00 1.28
1458 1489 2.195411 TGCAGCACCACACCACAT 59.805 55.556 0.00 0.00 0.00 3.21
1531 1562 6.985117 ACAATTACATGAACAAGCACAGAAT 58.015 32.000 0.00 0.00 0.00 2.40
1533 1564 5.334028 CGACAATTACATGAACAAGCACAGA 60.334 40.000 0.00 0.00 0.00 3.41
1569 1600 6.573664 AACTCAAAATCATCCGTCAATTCA 57.426 33.333 0.00 0.00 0.00 2.57
1574 1605 6.206438 TCATCAAAACTCAAAATCATCCGTCA 59.794 34.615 0.00 0.00 0.00 4.35
1604 1635 1.135915 GAGACCACTGATGCACTCGAT 59.864 52.381 0.00 0.00 0.00 3.59
1615 1654 9.995957 CATCGAAATACTATATAGAGACCACTG 57.004 37.037 16.79 1.91 0.00 3.66
1632 1675 8.831738 TCTAAATATTCCCCATCCATCGAAATA 58.168 33.333 0.00 0.00 0.00 1.40
1633 1676 7.698912 TCTAAATATTCCCCATCCATCGAAAT 58.301 34.615 0.00 0.00 0.00 2.17
1646 1689 9.884465 CGAAATGAACATCTTCTAAATATTCCC 57.116 33.333 0.00 0.00 0.00 3.97
1697 1741 1.810031 CGACACAAGCTCCCAACTTGA 60.810 52.381 10.26 0.00 45.99 3.02
1702 1746 0.034337 GTACCGACACAAGCTCCCAA 59.966 55.000 0.00 0.00 0.00 4.12
1705 1749 1.067142 TGATGTACCGACACAAGCTCC 60.067 52.381 0.00 0.00 38.76 4.70
1714 1758 6.504398 TCTCATTGATAGTTGATGTACCGAC 58.496 40.000 0.00 0.00 0.00 4.79
1717 1761 7.819900 GGGTATCTCATTGATAGTTGATGTACC 59.180 40.741 0.00 0.00 38.23 3.34
1720 1764 6.560304 AGGGGTATCTCATTGATAGTTGATGT 59.440 38.462 0.00 0.00 38.23 3.06
1721 1765 7.013823 AGGGGTATCTCATTGATAGTTGATG 57.986 40.000 0.00 0.00 38.23 3.07
1722 1766 8.742125 TTAGGGGTATCTCATTGATAGTTGAT 57.258 34.615 0.00 0.00 38.23 2.57
1723 1767 8.561536 TTTAGGGGTATCTCATTGATAGTTGA 57.438 34.615 0.00 0.00 38.23 3.18
1724 1768 9.627123 TTTTTAGGGGTATCTCATTGATAGTTG 57.373 33.333 0.00 0.00 38.23 3.16
1824 2316 9.855021 AACCACAGCAAAATTTACAGATATAAC 57.145 29.630 0.00 0.00 0.00 1.89
1827 2319 7.331687 GCAAACCACAGCAAAATTTACAGATAT 59.668 33.333 0.00 0.00 0.00 1.63
1832 2324 4.569966 CAGCAAACCACAGCAAAATTTACA 59.430 37.500 0.00 0.00 0.00 2.41
1842 2334 1.360192 GTGTCCAGCAAACCACAGC 59.640 57.895 0.00 0.00 0.00 4.40
1858 2350 7.174946 ACTGTGATACTTAAGGGAACAAATGTG 59.825 37.037 7.53 0.00 0.00 3.21
1898 2390 7.881232 CCCTCTTGTTTGACAACCTAATAAGTA 59.119 37.037 0.00 0.00 33.96 2.24
1901 2393 5.475564 GCCCTCTTGTTTGACAACCTAATAA 59.524 40.000 0.00 0.00 33.96 1.40
1974 2466 2.367567 TCCTTCACCAGGTGTTCTGTAC 59.632 50.000 19.65 0.00 44.37 2.90
2250 2743 2.956333 AGAACAAAAGGGTAGTGTTGCC 59.044 45.455 0.00 0.00 35.67 4.52
2430 2924 9.856488 CTCACTTACTAAACTACAGAATAGCAA 57.144 33.333 0.00 0.00 0.00 3.91
2493 2987 3.689649 CCCACAAAAGTAGGACAGCATAC 59.310 47.826 0.00 0.00 0.00 2.39
2521 3015 4.831107 AGTTTTTGCACTGGTTTTGTGAT 58.169 34.783 0.00 0.00 37.60 3.06
2522 3016 4.264460 AGTTTTTGCACTGGTTTTGTGA 57.736 36.364 0.00 0.00 37.60 3.58
2525 3019 7.850492 GCTATAAAAGTTTTTGCACTGGTTTTG 59.150 33.333 6.10 0.00 0.00 2.44
2526 3020 7.768582 AGCTATAAAAGTTTTTGCACTGGTTTT 59.231 29.630 6.10 0.00 0.00 2.43
2527 3021 7.272244 AGCTATAAAAGTTTTTGCACTGGTTT 58.728 30.769 6.10 0.00 0.00 3.27
2528 3022 6.816136 AGCTATAAAAGTTTTTGCACTGGTT 58.184 32.000 6.10 0.00 0.00 3.67
2529 3023 6.405278 AGCTATAAAAGTTTTTGCACTGGT 57.595 33.333 6.10 0.00 0.00 4.00
2530 3024 8.243426 TCATAGCTATAAAAGTTTTTGCACTGG 58.757 33.333 5.77 2.20 0.00 4.00
2531 3025 9.624697 TTCATAGCTATAAAAGTTTTTGCACTG 57.375 29.630 5.77 9.86 0.00 3.66
2545 3039 9.342308 CCTGAGTTTTCCATTTCATAGCTATAA 57.658 33.333 5.77 0.00 0.00 0.98
2565 3059 7.747809 AGAATAAATCCTCTCTTTCCTGAGT 57.252 36.000 0.00 0.00 35.68 3.41
2568 3062 9.844257 ACAATAGAATAAATCCTCTCTTTCCTG 57.156 33.333 0.00 0.00 0.00 3.86
2569 3063 9.844257 CACAATAGAATAAATCCTCTCTTTCCT 57.156 33.333 0.00 0.00 0.00 3.36
2595 3094 9.601217 TCACTTAATTTTGCCTCTAAGACTATC 57.399 33.333 0.00 0.00 0.00 2.08
2599 3098 8.178313 GTGATCACTTAATTTTGCCTCTAAGAC 58.822 37.037 18.83 0.00 0.00 3.01
2600 3099 7.882791 TGTGATCACTTAATTTTGCCTCTAAGA 59.117 33.333 25.55 0.00 0.00 2.10
2604 3103 6.006449 ACTGTGATCACTTAATTTTGCCTCT 58.994 36.000 25.55 0.00 0.00 3.69
2650 3149 8.267894 AGTGAGCTTTCCAAATAATTAGAGCTA 58.732 33.333 0.00 0.00 39.15 3.32
2661 3160 5.305128 TCAATTTCCAGTGAGCTTTCCAAAT 59.695 36.000 0.00 0.00 0.00 2.32
2671 3170 8.777865 TGTAGATAACTTCAATTTCCAGTGAG 57.222 34.615 0.00 0.00 0.00 3.51
2682 3181 6.330278 CACACCGATCTGTAGATAACTTCAA 58.670 40.000 0.00 0.00 34.37 2.69
2690 3189 0.753262 GCCCACACCGATCTGTAGAT 59.247 55.000 0.00 0.00 37.51 1.98
2691 3190 0.613572 TGCCCACACCGATCTGTAGA 60.614 55.000 0.00 0.00 0.00 2.59
2695 3194 2.475466 GCATGCCCACACCGATCTG 61.475 63.158 6.36 0.00 0.00 2.90
2715 3214 6.751514 ATGTACTCGCCATTGTTAAAATGA 57.248 33.333 0.00 0.00 0.00 2.57
2724 3223 5.239306 ACCATATCAAATGTACTCGCCATTG 59.761 40.000 0.00 0.00 33.01 2.82
2725 3224 5.376625 ACCATATCAAATGTACTCGCCATT 58.623 37.500 0.00 0.00 34.07 3.16
2729 3228 7.850982 CAGTTTTACCATATCAAATGTACTCGC 59.149 37.037 0.00 0.00 0.00 5.03
2737 3236 7.287696 GGACATCCCAGTTTTACCATATCAAAT 59.712 37.037 0.00 0.00 34.14 2.32
2738 3237 6.605594 GGACATCCCAGTTTTACCATATCAAA 59.394 38.462 0.00 0.00 34.14 2.69
2778 3277 4.962362 AGTTCATCCCAGTTTTGTCCTTTT 59.038 37.500 0.00 0.00 0.00 2.27
2782 3281 5.048713 CACTTAGTTCATCCCAGTTTTGTCC 60.049 44.000 0.00 0.00 0.00 4.02
2785 3284 5.070001 TCCACTTAGTTCATCCCAGTTTTG 58.930 41.667 0.00 0.00 0.00 2.44
2786 3285 5.319043 TCCACTTAGTTCATCCCAGTTTT 57.681 39.130 0.00 0.00 0.00 2.43
2802 3301 1.599047 CAGCCCGTCAGATCCACTT 59.401 57.895 0.00 0.00 0.00 3.16
2871 3370 3.370953 GGACAGCATACCCAACTCAGAAT 60.371 47.826 0.00 0.00 0.00 2.40
2895 3394 5.125417 TGCAATAGTTTTGTCCCATAAGAGC 59.875 40.000 0.00 0.00 0.00 4.09
2920 3419 7.246674 TCCATTTCATAGCGATACAAGTTTC 57.753 36.000 0.00 0.00 0.00 2.78
2993 3492 2.352651 TGCTGACATCGCTTAATCTTGC 59.647 45.455 0.00 0.00 0.00 4.01
2997 3496 5.657470 TGTTATGCTGACATCGCTTAATC 57.343 39.130 0.00 0.00 37.74 1.75
3089 3588 3.646023 AAAATGGTGCATGCCCGCG 62.646 57.895 16.68 0.00 33.35 6.46
3124 3624 9.381033 CAAAATATCCCTGTTGCATTTATCAAA 57.619 29.630 0.00 0.00 0.00 2.69
3186 3686 7.072177 TCTGGAACATCGAAACAAACATATC 57.928 36.000 0.00 0.00 38.20 1.63
3209 3709 6.149633 CACTTTTGTAGCTTTGTACCCATTC 58.850 40.000 0.00 0.00 0.00 2.67
3220 3720 4.883083 TCGATGAGACACTTTTGTAGCTT 58.117 39.130 0.00 0.00 35.47 3.74
3232 3732 7.067615 AGCTAAGAGTATTTCTTCGATGAGACA 59.932 37.037 0.94 0.00 42.54 3.41
3238 3738 8.467598 TGTGTTAGCTAAGAGTATTTCTTCGAT 58.532 33.333 6.38 0.00 42.54 3.59
3239 3739 7.823665 TGTGTTAGCTAAGAGTATTTCTTCGA 58.176 34.615 6.38 0.00 42.54 3.71
3292 3792 7.714377 AGCTGGAATATCAATAGAGAACACAAG 59.286 37.037 0.00 0.00 0.00 3.16
3313 3813 0.742505 CCATGCATGGTGTAAGCTGG 59.257 55.000 33.68 9.41 43.05 4.85
3633 4134 5.478679 TGTACACCATGGGGATTTTTACAAG 59.521 40.000 24.27 0.00 38.05 3.16
3638 4139 4.126520 ACTGTACACCATGGGGATTTTT 57.873 40.909 24.27 0.00 38.05 1.94
3647 4149 9.340695 CAATAACAACAATAACTGTACACCATG 57.659 33.333 0.00 0.00 37.23 3.66
3728 4230 5.490472 TTCGATTAAGTTCGTTTGACTCG 57.510 39.130 0.00 0.00 40.03 4.18
3731 4233 7.507304 TCTTGATTCGATTAAGTTCGTTTGAC 58.493 34.615 0.00 0.00 40.03 3.18
3749 4251 6.183360 GCTTGCCGTAAAGATAGTTCTTGATT 60.183 38.462 0.00 0.00 41.42 2.57
3823 4325 2.880890 GGAGAAAGTGACTGCAACATGT 59.119 45.455 0.00 0.00 0.00 3.21
3862 4364 6.453092 TCCACAGTAACTGAAAGCTAAGTAC 58.547 40.000 0.00 0.00 37.60 2.73
3906 4408 4.094887 AGTTATGCATGGTGAAAGTAAGCG 59.905 41.667 10.16 0.00 0.00 4.68
3919 4421 5.008019 ACGAATCAAAGCCTAGTTATGCATG 59.992 40.000 10.16 0.00 0.00 4.06
3924 4426 6.407202 ACAGAACGAATCAAAGCCTAGTTAT 58.593 36.000 0.00 0.00 0.00 1.89
3941 4443 6.918569 AGGATGATATACGAGAAAACAGAACG 59.081 38.462 0.00 0.00 0.00 3.95
3964 4468 9.933723 ATTTCACATCAGATTTTTCCTTTAAGG 57.066 29.630 4.29 4.29 36.46 2.69
3969 4473 7.176690 ACGGTATTTCACATCAGATTTTTCCTT 59.823 33.333 0.00 0.00 0.00 3.36
3971 4475 6.852664 ACGGTATTTCACATCAGATTTTTCC 58.147 36.000 0.00 0.00 0.00 3.13
3975 4479 6.037172 GCAGTACGGTATTTCACATCAGATTT 59.963 38.462 0.00 0.00 0.00 2.17
3991 4495 1.125711 AGGGAAAGTGGCAGTACGGT 61.126 55.000 0.00 0.00 0.00 4.83
3994 4498 3.714391 CGTATAGGGAAAGTGGCAGTAC 58.286 50.000 0.00 0.00 0.00 2.73
3997 4501 1.583054 GCGTATAGGGAAAGTGGCAG 58.417 55.000 0.00 0.00 0.00 4.85
3999 4503 1.496403 GCGCGTATAGGGAAAGTGGC 61.496 60.000 8.43 0.00 34.27 5.01
4014 4518 2.606717 ATCATGATAAATGCTGCGCG 57.393 45.000 6.36 0.00 0.00 6.86
4020 4524 9.277783 ACCTAGTAACTGAATCATGATAAATGC 57.722 33.333 9.04 0.00 0.00 3.56
4026 4530 8.932610 AGATCAACCTAGTAACTGAATCATGAT 58.067 33.333 1.18 1.18 0.00 2.45
4038 4542 2.646930 TCGCGGAGATCAACCTAGTAA 58.353 47.619 6.13 0.00 0.00 2.24
4039 4543 2.336945 TCGCGGAGATCAACCTAGTA 57.663 50.000 6.13 0.00 0.00 1.82
4040 4544 1.471119 TTCGCGGAGATCAACCTAGT 58.529 50.000 6.13 0.00 0.00 2.57
4041 4545 2.398498 CATTCGCGGAGATCAACCTAG 58.602 52.381 6.13 0.00 0.00 3.02
4042 4546 1.538204 GCATTCGCGGAGATCAACCTA 60.538 52.381 6.13 0.00 0.00 3.08
4054 4558 0.234106 CAGCTAGGATTGCATTCGCG 59.766 55.000 0.00 0.00 42.97 5.87
4056 4560 1.302366 TGCAGCTAGGATTGCATTCG 58.698 50.000 2.69 0.00 44.72 3.34
4061 4565 1.878734 GAGGAATGCAGCTAGGATTGC 59.121 52.381 11.57 11.57 44.78 3.56
4062 4566 3.181457 TGAGAGGAATGCAGCTAGGATTG 60.181 47.826 7.43 0.00 38.50 2.67
4087 4591 2.029828 ACCTGCAAGAGTAGACACTTCG 60.030 50.000 0.00 0.00 34.21 3.79
4088 4592 3.669251 ACCTGCAAGAGTAGACACTTC 57.331 47.619 0.00 0.00 34.21 3.01
4093 4597 4.180057 CTCATGAACCTGCAAGAGTAGAC 58.820 47.826 0.00 0.00 34.07 2.59
4095 4599 3.196469 TCCTCATGAACCTGCAAGAGTAG 59.804 47.826 0.00 0.00 33.11 2.57
4097 4601 1.980765 TCCTCATGAACCTGCAAGAGT 59.019 47.619 0.00 0.00 33.11 3.24
4099 4603 1.980765 AGTCCTCATGAACCTGCAAGA 59.019 47.619 0.00 0.00 34.07 3.02
4100 4604 2.486472 AGTCCTCATGAACCTGCAAG 57.514 50.000 0.00 0.00 0.00 4.01
4119 4629 2.357034 GCGCTTCGACCTGGACAA 60.357 61.111 0.00 0.00 0.00 3.18
4121 4631 2.048127 AAGCGCTTCGACCTGGAC 60.048 61.111 18.98 0.00 0.00 4.02
4265 4775 2.159226 ACTCTGGTGCGCTAACATCTAC 60.159 50.000 9.73 0.00 0.00 2.59
4273 4784 1.515954 GGCTAACTCTGGTGCGCTA 59.484 57.895 9.73 0.00 0.00 4.26
4292 4803 5.695851 ATTCAAAAACTGTGGCAGTCTAG 57.304 39.130 2.04 0.00 44.62 2.43
4306 4817 6.323266 TCGAAGACGTGGAAAAATTCAAAAA 58.677 32.000 0.00 0.00 40.69 1.94
4307 4818 5.881447 TCGAAGACGTGGAAAAATTCAAAA 58.119 33.333 0.00 0.00 40.69 2.44
4308 4819 5.487153 TCGAAGACGTGGAAAAATTCAAA 57.513 34.783 0.00 0.00 40.69 2.69
4309 4820 5.487153 TTCGAAGACGTGGAAAAATTCAA 57.513 34.783 0.00 0.00 40.69 2.69
4310 4821 5.487153 TTTCGAAGACGTGGAAAAATTCA 57.513 34.783 0.00 0.00 40.69 2.57
4311 4822 6.371389 AGATTTCGAAGACGTGGAAAAATTC 58.629 36.000 0.00 0.00 37.47 2.17
4312 4823 6.313744 AGATTTCGAAGACGTGGAAAAATT 57.686 33.333 0.00 0.00 37.47 1.82
4313 4824 5.941948 AGATTTCGAAGACGTGGAAAAAT 57.058 34.783 0.00 0.00 37.47 1.82
4336 4856 0.537143 ACCAATGCAAGGAAGCGTCA 60.537 50.000 14.81 0.00 37.31 4.35
4356 4876 4.449068 GCTAAATCTCGTACATCCACATGG 59.551 45.833 0.00 0.00 33.82 3.66
4361 4881 5.339008 ACAAGCTAAATCTCGTACATCCA 57.661 39.130 0.00 0.00 0.00 3.41
4399 4939 2.036604 GCCTATCACCTCTTCCTGCTAC 59.963 54.545 0.00 0.00 0.00 3.58
4426 4966 7.749126 GGTGTGTATGAAAAACGGAAAAGATAG 59.251 37.037 0.00 0.00 0.00 2.08
4427 4967 7.308710 GGGTGTGTATGAAAAACGGAAAAGATA 60.309 37.037 0.00 0.00 0.00 1.98
4430 4970 4.979815 GGGTGTGTATGAAAAACGGAAAAG 59.020 41.667 0.00 0.00 0.00 2.27
4433 4973 3.552875 TGGGTGTGTATGAAAAACGGAA 58.447 40.909 0.00 0.00 0.00 4.30
4434 4974 3.142951 CTGGGTGTGTATGAAAAACGGA 58.857 45.455 0.00 0.00 0.00 4.69
4435 4975 3.142951 TCTGGGTGTGTATGAAAAACGG 58.857 45.455 0.00 0.00 0.00 4.44
4446 4987 2.590575 CGGCGTTTCTGGGTGTGT 60.591 61.111 0.00 0.00 0.00 3.72
4507 5048 1.746615 CATCTTGCCGGACCACTGG 60.747 63.158 5.05 0.00 44.87 4.00
4548 5100 5.336372 CCACTATCAGAAATTCCCGCAAAAA 60.336 40.000 0.00 0.00 0.00 1.94
4569 5121 0.030235 GAAAGACGGCAACCAACCAC 59.970 55.000 0.00 0.00 0.00 4.16
4570 5122 0.106918 AGAAAGACGGCAACCAACCA 60.107 50.000 0.00 0.00 0.00 3.67
4571 5123 1.029681 AAGAAAGACGGCAACCAACC 58.970 50.000 0.00 0.00 0.00 3.77
4649 5201 1.972588 ACTAGCACCCTCCCTGAAAT 58.027 50.000 0.00 0.00 0.00 2.17
4697 5249 9.445878 CTGCATATATGGTGAGAATATCAGTTT 57.554 33.333 14.51 0.00 39.07 2.66
4739 5291 0.037697 ATCCAGCGACAGTTGCGTTA 60.038 50.000 7.16 0.00 37.44 3.18
4864 5416 5.008217 GCACCTGACAGATAGACAGTACTAG 59.992 48.000 3.32 0.00 38.17 2.57
4865 5417 4.882427 GCACCTGACAGATAGACAGTACTA 59.118 45.833 3.32 0.00 38.17 1.82
4866 5418 3.697045 GCACCTGACAGATAGACAGTACT 59.303 47.826 3.32 0.00 38.17 2.73
4867 5419 3.181485 GGCACCTGACAGATAGACAGTAC 60.181 52.174 3.32 0.00 38.17 2.73
4868 5420 3.024547 GGCACCTGACAGATAGACAGTA 58.975 50.000 3.32 0.00 38.17 2.74
4869 5421 1.827969 GGCACCTGACAGATAGACAGT 59.172 52.381 3.32 0.00 38.17 3.55
4870 5422 2.593346 GGCACCTGACAGATAGACAG 57.407 55.000 3.32 0.00 39.31 3.51
4927 5483 3.451894 CTTGCCGCCCCAATGGAC 61.452 66.667 0.00 0.00 35.39 4.02
4954 5514 3.741476 CTTGCGGCTCTGGTTGCC 61.741 66.667 0.00 0.00 46.42 4.52
4955 5515 4.410743 GCTTGCGGCTCTGGTTGC 62.411 66.667 0.00 0.00 38.06 4.17
4989 5549 1.218316 GTAAGGTGGCCTGTCTCCG 59.782 63.158 3.32 0.00 32.13 4.63
5037 5597 6.374417 TCACCATCATCAGATCATCATCAT 57.626 37.500 0.00 0.00 30.20 2.45
5038 5598 5.818678 TCACCATCATCAGATCATCATCA 57.181 39.130 0.00 0.00 30.20 3.07
5039 5599 6.407202 TCATCACCATCATCAGATCATCATC 58.593 40.000 0.00 0.00 30.20 2.92
5126 5690 1.758319 GCGTGATTGCAATGCCATGC 61.758 55.000 22.27 22.27 46.58 4.06
5194 5761 1.302832 GCACCCCTTCTGTGACAGG 60.303 63.158 13.33 0.00 35.74 4.00
5214 5781 3.584868 CTCACCCCGTCACCCGAAC 62.585 68.421 0.00 0.00 39.56 3.95
5215 5782 3.307906 CTCACCCCGTCACCCGAA 61.308 66.667 0.00 0.00 39.56 4.30
5216 5783 3.813606 TTCTCACCCCGTCACCCGA 62.814 63.158 0.00 0.00 39.56 5.14
5218 5785 1.302271 GTTTCTCACCCCGTCACCC 60.302 63.158 0.00 0.00 0.00 4.61
5219 5786 0.883370 GTGTTTCTCACCCCGTCACC 60.883 60.000 0.00 0.00 40.84 4.02
5220 5787 2.613390 GTGTTTCTCACCCCGTCAC 58.387 57.895 0.00 0.00 40.84 3.67
5273 5840 3.986006 TCACAGCCACGTCCGTCC 61.986 66.667 0.00 0.00 0.00 4.79
5278 5845 0.941463 CTCACAGTCACAGCCACGTC 60.941 60.000 0.00 0.00 0.00 4.34
5279 5846 1.068083 CTCACAGTCACAGCCACGT 59.932 57.895 0.00 0.00 0.00 4.49
5284 5851 2.740055 CGGGCTCACAGTCACAGC 60.740 66.667 0.00 0.00 0.00 4.40
5285 5852 2.740055 GCGGGCTCACAGTCACAG 60.740 66.667 0.00 0.00 0.00 3.66
5286 5853 3.545574 TGCGGGCTCACAGTCACA 61.546 61.111 0.00 0.00 0.00 3.58
5287 5854 3.044305 GTGCGGGCTCACAGTCAC 61.044 66.667 5.75 0.00 36.97 3.67
5288 5855 4.662961 CGTGCGGGCTCACAGTCA 62.663 66.667 10.11 0.00 36.80 3.41
5289 5856 3.277211 TACGTGCGGGCTCACAGTC 62.277 63.158 0.00 0.00 36.80 3.51
5290 5857 3.299977 TACGTGCGGGCTCACAGT 61.300 61.111 0.00 10.27 36.80 3.55
5291 5858 2.765250 AAGTACGTGCGGGCTCACAG 62.765 60.000 0.00 6.18 36.80 3.66
5292 5859 1.525718 TAAGTACGTGCGGGCTCACA 61.526 55.000 0.00 0.00 36.80 3.58
5293 5860 0.179119 ATAAGTACGTGCGGGCTCAC 60.179 55.000 0.00 1.33 0.00 3.51
5294 5861 0.533491 AATAAGTACGTGCGGGCTCA 59.467 50.000 0.00 0.00 0.00 4.26
5295 5862 2.497107 TAATAAGTACGTGCGGGCTC 57.503 50.000 0.00 0.00 0.00 4.70
5298 5865 3.314553 CCAGATAATAAGTACGTGCGGG 58.685 50.000 0.00 0.00 0.00 6.13
5299 5866 2.729882 GCCAGATAATAAGTACGTGCGG 59.270 50.000 0.00 0.00 0.00 5.69
5300 5867 3.181774 GTGCCAGATAATAAGTACGTGCG 59.818 47.826 0.00 0.00 0.00 5.34
5301 5868 3.493503 GGTGCCAGATAATAAGTACGTGC 59.506 47.826 0.00 0.00 0.00 5.34
5302 5869 4.056050 GGGTGCCAGATAATAAGTACGTG 58.944 47.826 0.00 0.00 0.00 4.49
5305 5872 4.017177 GGGGGTGCCAGATAATAAGTAC 57.983 50.000 0.00 0.00 0.00 2.73
5324 5891 1.767759 GTTCCATGTCATCTTGGGGG 58.232 55.000 0.00 0.00 38.78 5.40
5356 6003 2.734673 CGCTTCTTCCTCTGCACGC 61.735 63.158 0.00 0.00 0.00 5.34
5357 6004 2.097038 CCGCTTCTTCCTCTGCACG 61.097 63.158 0.00 0.00 0.00 5.34
5358 6005 1.743252 CCCGCTTCTTCCTCTGCAC 60.743 63.158 0.00 0.00 0.00 4.57
5393 6040 4.314440 TGCCGTGTGGACAGAGCC 62.314 66.667 0.00 0.00 37.49 4.70
5396 6043 3.220658 TCGTGCCGTGTGGACAGA 61.221 61.111 0.00 0.00 37.49 3.41
5433 6095 3.130160 CTGCGCCAAGGAAGCTCC 61.130 66.667 4.18 0.00 36.58 4.70
5434 6096 3.130160 CCTGCGCCAAGGAAGCTC 61.130 66.667 8.05 0.00 40.02 4.09
5435 6097 3.909086 GACCTGCGCCAAGGAAGCT 62.909 63.158 19.86 0.00 40.02 3.74
5436 6098 3.435186 GACCTGCGCCAAGGAAGC 61.435 66.667 19.86 5.71 40.02 3.86
5441 6103 3.726517 CAACCGACCTGCGCCAAG 61.727 66.667 4.18 0.00 39.11 3.61
5442 6104 4.243008 TCAACCGACCTGCGCCAA 62.243 61.111 4.18 0.00 39.11 4.52
5489 6162 0.397941 ATCCATGCAGGTATCACCGG 59.602 55.000 0.00 0.00 44.90 5.28
5490 6163 1.800805 GATCCATGCAGGTATCACCG 58.199 55.000 0.00 0.00 44.90 4.94
5491 6164 1.344438 TCGATCCATGCAGGTATCACC 59.656 52.381 4.78 0.00 38.99 4.02
5492 6165 2.820059 TCGATCCATGCAGGTATCAC 57.180 50.000 4.78 0.00 39.02 3.06
5493 6166 2.094545 CGATCGATCCATGCAGGTATCA 60.095 50.000 19.51 0.00 39.02 2.15
5495 6168 1.404717 GCGATCGATCCATGCAGGTAT 60.405 52.381 21.57 0.00 39.02 2.73
5496 6169 0.038251 GCGATCGATCCATGCAGGTA 60.038 55.000 21.57 0.00 39.02 3.08
5497 6170 1.301244 GCGATCGATCCATGCAGGT 60.301 57.895 21.57 0.00 39.02 4.00
5501 6181 0.319383 AGTGAGCGATCGATCCATGC 60.319 55.000 28.63 16.40 0.00 4.06
5515 6195 3.172575 CACGCGTACGCCAGTGAG 61.173 66.667 31.74 21.40 45.53 3.51
5541 6234 1.197721 ACCTCTGCGAAAATTTCTGCG 59.802 47.619 14.20 6.84 33.84 5.18
5549 6242 1.250328 TCCGTCTACCTCTGCGAAAA 58.750 50.000 0.00 0.00 0.00 2.29
5552 6245 1.101635 CCATCCGTCTACCTCTGCGA 61.102 60.000 0.00 0.00 0.00 5.10
5554 6247 1.068250 GCCATCCGTCTACCTCTGC 59.932 63.158 0.00 0.00 0.00 4.26
5555 6248 0.387202 CTGCCATCCGTCTACCTCTG 59.613 60.000 0.00 0.00 0.00 3.35
5607 6488 4.785453 CAAGGCCTCCACCGCTCC 62.785 72.222 5.23 0.00 33.69 4.70
5668 6549 3.200593 CTCATGCCTGGCGTGCTC 61.201 66.667 31.36 0.00 44.29 4.26
5717 6598 4.918201 CCGGCGATCCTTCCCTGC 62.918 72.222 9.30 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.