AutoCloner

Multiple sequence alignment - TraesCS4A01G374500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G374500	chr4A	100.000	3579	0	0	1	3579	649183575	649187153	0.000000e+00	6610.0
1	TraesCS4A01G374500	chr4A	93.504	2694	148	18	5	2692	649112104	649114776	0.000000e+00	3980.0
2	TraesCS4A01G374500	chr4A	100.000	365	0	0	3940	4304	649187514	649187878	0.000000e+00	675.0
3	TraesCS4A01G374500	chr4A	87.697	317	24	10	3940	4251	649115719	649116025	5.290000e-94	355.0
4	TraesCS4A01G374500	chrUn	93.712	3578	202	13	5	3574	250936237	250932675	0.000000e+00	5339.0
5	TraesCS4A01G374500	chrUn	93.515	2051	120	6	1527	3574	346630072	346628032	0.000000e+00	3038.0
6	TraesCS4A01G374500	chrUn	92.641	1223	79	3	2354	3573	283089904	283091118	0.000000e+00	1749.0
7	TraesCS4A01G374500	chrUn	94.406	143	8	0	3940	4082	283091219	283091361	2.010000e-53	220.0
8	TraesCS4A01G374500	chrUn	94.406	143	8	0	3940	4082	370048684	370048542	2.010000e-53	220.0
9	TraesCS4A01G374500	chrUn	93.706	143	9	0	3940	4082	250932574	250932432	9.370000e-52	215.0
10	TraesCS4A01G374500	chrUn	93.985	133	8	0	3940	4072	346627931	346627799	7.300000e-48	202.0
11	TraesCS4A01G374500	chr7D	95.075	2883	115	17	691	3570	42427393	42430251	0.000000e+00	4512.0
12	TraesCS4A01G374500	chr7D	92.456	2757	171	21	546	3293	42084350	42081622	0.000000e+00	3904.0
13	TraesCS4A01G374500	chr7D	92.015	2755	193	18	546	3293	42212672	42215406	0.000000e+00	3843.0
14	TraesCS4A01G374500	chr7D	95.121	2029	77	14	1545	3570	42423246	42425255	0.000000e+00	3179.0
15	TraesCS4A01G374500	chr7D	93.471	919	46	11	1	913	42422338	42423248	0.000000e+00	1352.0
16	TraesCS4A01G374500	chr7D	92.038	314	14	7	3940	4251	42430356	42430660	8.550000e-117	431.0
17	TraesCS4A01G374500	chr7D	90.190	316	17	9	3940	4250	42425360	42425666	2.410000e-107	399.0
18	TraesCS4A01G374500	chr7A	94.420	2778	136	16	667	3439	41746654	41749417	0.000000e+00	4253.0
19	TraesCS4A01G374500	chr7A	94.310	2777	143	13	667	3439	41775158	41777923	0.000000e+00	4239.0
20	TraesCS4A01G374500	chr7A	94.099	2779	143	17	667	3439	41716218	41718981	0.000000e+00	4204.0
21	TraesCS4A01G374500	chr7A	90.543	2760	236	20	546	3293	41619200	41621946	0.000000e+00	3627.0
22	TraesCS4A01G374500	chr7A	91.298	678	51	6	1	671	41664701	41665377	0.000000e+00	918.0
23	TraesCS4A01G374500	chr2B	91.670	2677	203	16	546	3213	783889176	783886511	0.000000e+00	3690.0
24	TraesCS4A01G374500	chr3D	91.193	545	45	3	5	546	340901886	340901342	0.000000e+00	737.0
25	TraesCS4A01G374500	chr5B	91.026	546	47	2	1	545	465538981	465539525	0.000000e+00	736.0
26	TraesCS4A01G374500	chr4D	91.042	547	46	3	5	548	459021676	459021130	0.000000e+00	736.0
27	TraesCS4A01G374500	chr1D	90.792	543	48	2	5	545	267577953	267578495	0.000000e+00	725.0
28	TraesCS4A01G374500	chr1A	90.809	544	47	3	5	545	254145474	254146017	0.000000e+00	725.0
29	TraesCS4A01G374500	chr2D	89.474	57	5	1	3940	3996	483981429	483981484	2.150000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G374500	chr4A	649183575	649187878	4303	False	3642.5	6610	100.0000	1	4304	2	chr4A.!!$F2	4303
1	TraesCS4A01G374500	chr4A	649112104	649116025	3921	False	2167.5	3980	90.6005	5	4251	2	chr4A.!!$F1	4246
2	TraesCS4A01G374500	chrUn	250932432	250936237	3805	True	2777.0	5339	93.7090	5	4082	2	chrUn.!!$R2	4077
3	TraesCS4A01G374500	chrUn	346627799	346630072	2273	True	1620.0	3038	93.7500	1527	4072	2	chrUn.!!$R3	2545
4	TraesCS4A01G374500	chrUn	283089904	283091361	1457	False	984.5	1749	93.5235	2354	4082	2	chrUn.!!$F1	1728
5	TraesCS4A01G374500	chr7D	42081622	42084350	2728	True	3904.0	3904	92.4560	546	3293	1	chr7D.!!$R1	2747
6	TraesCS4A01G374500	chr7D	42212672	42215406	2734	False	3843.0	3843	92.0150	546	3293	1	chr7D.!!$F1	2747
7	TraesCS4A01G374500	chr7D	42422338	42430660	8322	False	1974.6	4512	93.1790	1	4251	5	chr7D.!!$F2	4250
8	TraesCS4A01G374500	chr7A	41746654	41749417	2763	False	4253.0	4253	94.4200	667	3439	1	chr7A.!!$F4	2772
9	TraesCS4A01G374500	chr7A	41775158	41777923	2765	False	4239.0	4239	94.3100	667	3439	1	chr7A.!!$F5	2772
10	TraesCS4A01G374500	chr7A	41716218	41718981	2763	False	4204.0	4204	94.0990	667	3439	1	chr7A.!!$F3	2772
11	TraesCS4A01G374500	chr7A	41619200	41621946	2746	False	3627.0	3627	90.5430	546	3293	1	chr7A.!!$F1	2747
12	TraesCS4A01G374500	chr7A	41664701	41665377	676	False	918.0	918	91.2980	1	671	1	chr7A.!!$F2	670
13	TraesCS4A01G374500	chr2B	783886511	783889176	2665	True	3690.0	3690	91.6700	546	3213	1	chr2B.!!$R1	2667
14	TraesCS4A01G374500	chr3D	340901342	340901886	544	True	737.0	737	91.1930	5	546	1	chr3D.!!$R1	541
15	TraesCS4A01G374500	chr5B	465538981	465539525	544	False	736.0	736	91.0260	1	545	1	chr5B.!!$F1	544
16	TraesCS4A01G374500	chr4D	459021130	459021676	546	True	736.0	736	91.0420	5	548	1	chr4D.!!$R1	543
17	TraesCS4A01G374500	chr1D	267577953	267578495	542	False	725.0	725	90.7920	5	545	1	chr1D.!!$F1	540
18	TraesCS4A01G374500	chr1A	254145474	254146017	543	False	725.0	725	90.8090	5	545	1	chr1A.!!$F1	540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
863	876	0.030235	GCTTTCACACCAACGGTTCC	59.970	55.0	0.0	0.0	31.02	3.62	F
2647	7038	0.253327	GTGCTGGGTTAGGAAGGAGG	59.747	60.0	0.0	0.0	0.00	4.30	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2837	7229	0.467290	ATTGGTGCAGAACAACCCGT	60.467	50.0	0.0	0.0	33.78	5.28	R
3958	8365	1.675552	CGGAAATGCCTTATTCGGGT	58.324	50.0	0.0	0.0	0.00	5.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	61	1.549950	CCAGGGGTTGCCAAAGTGTAT	60.550	52.381	0.00	0.00	0.00	2.29
99	103	0.524414	GGTTGCCATTTGTACGGGTC	59.476	55.000	0.00	0.00	0.00	4.46
150	154	2.749280	ATCACGACATCTTGCACTGA	57.251	45.000	0.00	0.00	0.00	3.41
229	233	1.597663	CACACCACTTCAAACGGAGAC	59.402	52.381	0.00	0.00	0.00	3.36
230	234	1.226746	CACCACTTCAAACGGAGACC	58.773	55.000	0.00	0.00	0.00	3.85
484	489	5.790593	TCTGTATTCGTTCAAGCCTAAACT	58.209	37.500	0.00	0.00	0.00	2.66
490	495	9.090692	GTATTCGTTCAAGCCTAAACTGTAATA	57.909	33.333	0.00	0.00	0.00	0.98
556	563	7.159372	ACCACGATCTTTCAATACAAGTACTT	58.841	34.615	1.12	1.12	0.00	2.24
578	585	2.004733	CCCGTCCCAAATTACGTCTTC	58.995	52.381	0.00	0.00	37.40	2.87
810	823	3.069586	TCGATCAAGAGTGTGTTTCCTGT	59.930	43.478	0.00	0.00	0.00	4.00
827	840	7.824289	TGTTTCCTGTCTATTTTGTATCCTCTG	59.176	37.037	0.00	0.00	0.00	3.35
863	876	0.030235	GCTTTCACACCAACGGTTCC	59.970	55.000	0.00	0.00	31.02	3.62
1014	5393	2.983229	AGATTCATCGAGCAAGCAAGT	58.017	42.857	0.00	0.00	0.00	3.16
1094	5473	5.964958	AATGGAGAATGTTGTAGTGTTGG	57.035	39.130	0.00	0.00	0.00	3.77
1156	5535	3.956848	GCCTTAGCCAATTCTCAATTCCT	59.043	43.478	0.00	0.00	0.00	3.36
1162	5541	9.342308	CTTAGCCAATTCTCAATTCCTTATGTA	57.658	33.333	0.00	0.00	0.00	2.29
1302	5681	6.849085	TGCTCCAACATACATACCAAAAAT	57.151	33.333	0.00	0.00	0.00	1.82
1303	5682	6.629128	TGCTCCAACATACATACCAAAAATG	58.371	36.000	0.00	0.00	0.00	2.32
1414	5793	4.927978	TGACGAAAAATGTTGGTCCATT	57.072	36.364	0.00	0.00	36.62	3.16
1459	5838	2.413112	CACAATAGTCAGGTTCACAGCG	59.587	50.000	0.00	0.00	0.00	5.18
1489	5868	1.065551	GTTGTGGCAAGTGGTGAGAAC	59.934	52.381	0.00	0.00	0.00	3.01
1506	5885	7.178451	TGGTGAGAACAGTGTAGAGAATATTCA	59.822	37.037	17.56	0.00	0.00	2.57
1518	5897	6.439636	AGAGAATATTCAAATGATCCCCGA	57.560	37.500	17.56	0.00	0.00	5.14
1533	5912	1.681264	CCCCGAACTGCAAAGTTTTCT	59.319	47.619	0.00	0.00	31.35	2.52
1560	5939	1.980765	TGTCATCCACTCCTCAAGCTT	59.019	47.619	0.00	0.00	0.00	3.74
1564	5943	3.072915	TCATCCACTCCTCAAGCTTCAAA	59.927	43.478	0.00	0.00	0.00	2.69
1637	6016	7.325694	CAACTCTGGAATGGAAATTGCTTATT	58.674	34.615	0.00	0.00	0.00	1.40
1697	6076	2.894240	AAGCCCGGTATGTACACGCG	62.894	60.000	3.53	3.53	0.00	6.01
1781	6166	9.284968	GCACTATATATTTTCAGTGGGTACATT	57.715	33.333	12.97	0.00	39.02	2.71
1914	6299	7.654520	ACAACTAAGCAATTAGACGAACTACAA	59.345	33.333	2.19	0.00	0.00	2.41
2123	6508	6.697019	CGGCAAATTTAATATTTGGAGACCTG	59.303	38.462	17.29	7.77	38.91	4.00
2183	6568	1.064240	ACCCTCAAGTCAAAAACGGGT	60.064	47.619	0.00	0.00	38.56	5.28
2205	6590	4.743151	GTCGATCCGCTGTTATTGATGTTA	59.257	41.667	0.00	0.00	0.00	2.41
2352	6738	4.101741	ACAGGGGAGCATTAGTAAGATCAC	59.898	45.833	0.00	0.00	0.00	3.06
2444	6830	6.528537	ACAAAAGCACAGCAAATATATGGA	57.471	33.333	0.00	0.00	0.00	3.41
2522	6908	9.248291	CAACAATTGTTAAATCTGCTAACAAGT	57.752	29.630	22.87	8.04	46.74	3.16
2647	7038	0.253327	GTGCTGGGTTAGGAAGGAGG	59.747	60.000	0.00	0.00	0.00	4.30
2713	7104	1.953559	TCAAATCAGTGATAGGCGCC	58.046	50.000	21.89	21.89	0.00	6.53
2753	7145	2.370281	ACAGTGAATGCGTCTTCGAT	57.630	45.000	0.00	0.00	39.71	3.59
2949	7341	1.818060	CCTTCCAATGCAATGAACCGA	59.182	47.619	2.50	0.00	0.00	4.69
2975	7370	4.023193	AGGTCATTTGCGTTTTCTCGATTT	60.023	37.500	0.00	0.00	0.00	2.17
2976	7371	4.088496	GGTCATTTGCGTTTTCTCGATTTG	59.912	41.667	0.00	0.00	0.00	2.32
2977	7372	4.675114	GTCATTTGCGTTTTCTCGATTTGT	59.325	37.500	0.00	0.00	0.00	2.83
2980	7375	5.368552	TTTGCGTTTTCTCGATTTGTTTG	57.631	34.783	0.00	0.00	0.00	2.93
3060	7457	1.153369	CTATCCACCGCCACCTGTG	60.153	63.158	0.00	0.00	0.00	3.66
3129	7526	1.212935	AGGTTCATATGTGCCAGGGAC	59.787	52.381	3.58	3.58	0.00	4.46
3180	7577	5.072741	GGGATTTATACTCACATGGTGCAT	58.927	41.667	0.00	0.00	32.98	3.96
3200	7599	9.237846	GGTGCATAGAGCTTTGTAATTTTTATC	57.762	33.333	0.00	0.00	45.94	1.75
3266	7666	2.982488	AGAAGTCATCCCCTTGAACACT	59.018	45.455	0.00	0.00	0.00	3.55
3407	7811	6.269077	ACGTGGACACTATGGATTGGATATAA	59.731	38.462	0.56	0.00	0.00	0.98
3417	7821	7.835728	ATGGATTGGATATAAGAGGATTGGA	57.164	36.000	0.00	0.00	0.00	3.53
3451	7858	4.325658	CCTCAAAATCAGGGGGAGAGAATT	60.326	45.833	0.00	0.00	0.00	2.17
3516	7923	9.740710	GGGTAATATAGACTTTTGCCTAATCAT	57.259	33.333	0.00	0.00	0.00	2.45
3530	7937	8.896320	TTGCCTAATCATTGTATACGTTGTAT	57.104	30.769	0.00	0.00	0.00	2.29
3532	7939	9.634163	TGCCTAATCATTGTATACGTTGTATAG	57.366	33.333	0.00	5.84	0.00	1.31
3557	7964	3.636282	AATTTAGAAACGGGCACACAC	57.364	42.857	0.00	0.00	0.00	3.82
3958	8365	0.531974	CCTATTCGGCGCCTTTAGCA	60.532	55.000	26.68	0.00	44.04	3.49
3982	8389	3.490761	CCGAATAAGGCATTTCCGCAAAT	60.491	43.478	0.00	0.00	40.77	2.32
4097	8505	2.207924	ACAACCTCGCGACCTCCTT	61.208	57.895	3.71	0.00	0.00	3.36
4128	8536	5.798934	CGTTAGCTACAGTAACCAACTACAG	59.201	44.000	0.00	0.00	35.76	2.74
4135	8543	6.720112	ACAGTAACCAACTACAGAACTACA	57.280	37.500	0.00	0.00	35.76	2.74
4136	8544	6.510536	ACAGTAACCAACTACAGAACTACAC	58.489	40.000	0.00	0.00	35.76	2.90
4137	8545	6.097270	ACAGTAACCAACTACAGAACTACACA	59.903	38.462	0.00	0.00	35.76	3.72
4138	8546	6.982141	CAGTAACCAACTACAGAACTACACAA	59.018	38.462	0.00	0.00	35.76	3.33
4139	8547	7.169308	CAGTAACCAACTACAGAACTACACAAG	59.831	40.741	0.00	0.00	35.76	3.16
4140	8548	5.609533	ACCAACTACAGAACTACACAAGT	57.390	39.130	0.00	0.00	41.49	3.16
4141	8549	6.720112	ACCAACTACAGAACTACACAAGTA	57.280	37.500	0.00	0.00	37.50	2.24
4142	8550	6.510536	ACCAACTACAGAACTACACAAGTAC	58.489	40.000	0.00	0.00	37.50	2.73
4151	8559	7.015877	ACAGAACTACACAAGTACCCTCATTTA	59.984	37.037	0.00	0.00	37.50	1.40
4157	8565	7.833285	ACACAAGTACCCTCATTTAATTTGT	57.167	32.000	0.00	0.00	0.00	2.83
4158	8566	8.927675	ACACAAGTACCCTCATTTAATTTGTA	57.072	30.769	0.00	0.00	0.00	2.41
4274	8682	9.996554	TTTCTTGTTCCTTCTTTTCTTTCTTTT	57.003	25.926	0.00	0.00	0.00	2.27
4275	8683	9.996554	TTCTTGTTCCTTCTTTTCTTTCTTTTT	57.003	25.926	0.00	0.00	0.00	1.94
4276	8684	9.639601	TCTTGTTCCTTCTTTTCTTTCTTTTTC	57.360	29.630	0.00	0.00	0.00	2.29
4277	8685	9.645059	CTTGTTCCTTCTTTTCTTTCTTTTTCT	57.355	29.630	0.00	0.00	0.00	2.52
4278	8686	9.996554	TTGTTCCTTCTTTTCTTTCTTTTTCTT	57.003	25.926	0.00	0.00	0.00	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	3.841758	GGCCACCGGTACCCGTAG	61.842	72.222	6.87	0.00	46.80	3.51
41	42	1.272212	CACATACACTTTGGCAACCCC	59.728	52.381	0.00	0.00	0.00	4.95
42	43	1.960689	ACACATACACTTTGGCAACCC	59.039	47.619	0.00	0.00	0.00	4.11
99	103	2.124570	CTTGGGGGCGGTCATCAG	60.125	66.667	0.00	0.00	0.00	2.90
112	116	1.506028	TTCCACTAAGGGGCCCTTGG	61.506	60.000	41.71	40.02	44.44	3.61
119	123	1.553248	TGTCGTGATTCCACTAAGGGG	59.447	52.381	0.00	0.00	41.06	4.79
150	154	1.034838	AATCTCCTCACGCTCTCGCT	61.035	55.000	0.00	0.00	39.84	4.93
195	199	1.181098	GGTGTGGAGGCACAATGCTT	61.181	55.000	0.13	0.00	44.28	3.91
229	233	0.744414	CACACCCTTACGGATGCTGG	60.744	60.000	0.00	0.00	34.64	4.85
230	234	0.249120	TCACACCCTTACGGATGCTG	59.751	55.000	0.00	0.00	34.64	4.41
239	243	4.841813	TGTATCCTGAAGTTCACACCCTTA	59.158	41.667	0.08	0.00	0.00	2.69
284	289	2.296073	AGGGCTCGGGTAAGAGATAG	57.704	55.000	0.00	0.00	40.57	2.08
465	470	9.656040	TTATTACAGTTTAGGCTTGAACGAATA	57.344	29.630	0.00	3.97	0.00	1.75
469	474	7.748847	ACATTATTACAGTTTAGGCTTGAACG	58.251	34.615	0.00	0.00	0.00	3.95
484	489	9.579768	GTGAATTGGTGCATTAACATTATTACA	57.420	29.630	0.00	0.00	0.00	2.41
490	495	4.323409	GGGGTGAATTGGTGCATTAACATT	60.323	41.667	0.00	0.00	0.00	2.71
521	526	4.202274	TGAAAGATCGTGGTTGTCACCTAA	60.202	41.667	0.00	0.00	44.61	2.69
531	538	6.698380	AGTACTTGTATTGAAAGATCGTGGT	58.302	36.000	0.00	0.00	0.00	4.16
556	563	0.249955	GACGTAATTTGGGACGGGGA	59.750	55.000	3.74	0.00	43.32	4.81
615	622	6.369890	GTCGCAGAAATGGATGTATCACATAT	59.630	38.462	0.00	0.00	37.30	1.78
616	623	5.696270	GTCGCAGAAATGGATGTATCACATA	59.304	40.000	0.00	0.00	37.30	2.29
617	624	4.512944	GTCGCAGAAATGGATGTATCACAT	59.487	41.667	0.00	0.00	39.41	3.21
618	625	3.871006	GTCGCAGAAATGGATGTATCACA	59.129	43.478	0.00	0.00	39.69	3.58
619	626	3.871006	TGTCGCAGAAATGGATGTATCAC	59.129	43.478	0.00	0.00	39.69	3.06
620	627	4.135747	TGTCGCAGAAATGGATGTATCA	57.864	40.909	0.00	0.00	39.69	2.15
827	840	6.316140	TGTGAAAGCATGTCCTGATACATTAC	59.684	38.462	0.00	0.00	38.01	1.89
1014	5393	3.872240	GCAATGGTAGGCTGGAGTGTTTA	60.872	47.826	0.00	0.00	0.00	2.01
1156	5535	5.636121	ACTTTCACGCTCGACAATTACATAA	59.364	36.000	0.00	0.00	0.00	1.90
1162	5541	2.602217	GCAACTTTCACGCTCGACAATT	60.602	45.455	0.00	0.00	0.00	2.32
1302	5681	5.883115	TCATCCAAGTACTTCACAAACAACA	59.117	36.000	4.77	0.00	0.00	3.33
1303	5682	6.038271	AGTCATCCAAGTACTTCACAAACAAC	59.962	38.462	4.77	0.00	0.00	3.32
1414	5793	0.826672	TTGCCATGTCATGTGCCACA	60.827	50.000	18.08	0.00	0.00	4.17
1489	5868	8.997323	GGGATCATTTGAATATTCTCTACACTG	58.003	37.037	16.24	5.13	0.00	3.66
1506	5885	2.214376	TTGCAGTTCGGGGATCATTT	57.786	45.000	0.00	0.00	0.00	2.32
1518	5897	3.096092	TCACCCAGAAAACTTTGCAGTT	58.904	40.909	0.00	0.00	45.89	3.16
1533	5912	0.911769	GGAGTGGATGACATCACCCA	59.088	55.000	17.08	4.07	37.14	4.51
1560	5939	3.517100	AGAGTAGCTCTTGCCTGATTTGA	59.483	43.478	0.00	0.00	37.60	2.69
1564	5943	1.761784	CCAGAGTAGCTCTTGCCTGAT	59.238	52.381	0.00	0.00	38.99	2.90
1781	6166	8.588290	AGTGGTGGTTATAATAAGAAATTGCA	57.412	30.769	0.00	0.00	0.00	4.08
2123	6508	3.654414	CCTTCTAATGCCATACCTCGAC	58.346	50.000	0.00	0.00	0.00	4.20
2180	6565	1.202486	TCAATAACAGCGGATCGACCC	60.202	52.381	0.00	0.00	34.64	4.46
2183	6568	3.452755	ACATCAATAACAGCGGATCGA	57.547	42.857	0.00	0.00	0.00	3.59
2205	6590	5.606348	TTTTTGATTAACCCAACAGTGCT	57.394	34.783	0.00	0.00	0.00	4.40
2316	6702	1.435563	TCCCCTGTACCTGAAGGAGAA	59.564	52.381	2.62	0.00	38.94	2.87
2323	6709	2.292918	ACTAATGCTCCCCTGTACCTGA	60.293	50.000	0.00	0.00	0.00	3.86
2352	6738	5.666969	TTGAAATTCAACTATATCGCCCG	57.333	39.130	4.03	0.00	30.26	6.13
2594	6985	6.389091	CATTTTCACCTTTCCAATGATTCGA	58.611	36.000	0.00	0.00	0.00	3.71
2647	7038	1.035139	CTGCAATACCAGCCAATCCC	58.965	55.000	0.00	0.00	0.00	3.85
2713	7104	7.699391	CACTGTTTGATAATTTAGCTGGACATG	59.301	37.037	0.00	0.00	0.00	3.21
2753	7145	2.158769	AGTGATGGAAGGCATCGCATTA	60.159	45.455	0.67	0.00	40.79	1.90
2837	7229	0.467290	ATTGGTGCAGAACAACCCGT	60.467	50.000	0.00	0.00	33.78	5.28
2949	7341	4.041723	CGAGAAAACGCAAATGACCTTTT	58.958	39.130	0.00	0.00	0.00	2.27
3099	7496	4.580167	GCACATATGAACCTTGGCATAAGA	59.420	41.667	10.38	0.00	31.43	2.10
3100	7497	4.261741	GGCACATATGAACCTTGGCATAAG	60.262	45.833	10.38	0.00	31.43	1.73
3105	7502	1.406539	CTGGCACATATGAACCTTGGC	59.593	52.381	10.38	9.65	38.20	4.52
3106	7503	2.026641	CCTGGCACATATGAACCTTGG	58.973	52.381	10.38	11.87	38.20	3.61
3234	7634	3.624861	GGGATGACTTCTGCATGTGTAAG	59.375	47.826	0.00	0.00	0.00	2.34
3266	7666	7.040961	GCAGTTAGTCCCTTGTTGTTAAACATA	60.041	37.037	0.00	0.00	45.54	2.29
3393	7797	7.092083	CCTCCAATCCTCTTATATCCAATCCAT	60.092	40.741	0.00	0.00	0.00	3.41
3407	7811	2.003548	GGTGCCCCTCCAATCCTCT	61.004	63.158	0.00	0.00	0.00	3.69
3468	7875	6.409524	CCTTTATACGAGGGGTGTATAACA	57.590	41.667	5.36	0.00	41.81	2.41
3530	7937	5.046448	TGTGCCCGTTTCTAAATTAGTCCTA	60.046	40.000	0.00	0.00	0.00	2.94
3532	7939	4.004982	TGTGCCCGTTTCTAAATTAGTCC	58.995	43.478	0.00	0.00	0.00	3.85
3958	8365	1.675552	CGGAAATGCCTTATTCGGGT	58.324	50.000	0.00	0.00	0.00	5.28
4097	8505	6.980593	TGGTTACTGTAGCTAACGTAAAAGA	58.019	36.000	14.32	3.52	32.68	2.52
4128	8536	8.788325	ATTAAATGAGGGTACTTGTGTAGTTC	57.212	34.615	0.00	0.00	38.33	3.01
4135	8543	9.357161	TGTTACAAATTAAATGAGGGTACTTGT	57.643	29.630	0.00	0.00	0.00	3.16
4138	8546	9.185680	GGATGTTACAAATTAAATGAGGGTACT	57.814	33.333	0.00	0.00	0.00	2.73
4139	8547	9.185680	AGGATGTTACAAATTAAATGAGGGTAC	57.814	33.333	0.00	0.00	0.00	3.34
4140	8548	9.762381	AAGGATGTTACAAATTAAATGAGGGTA	57.238	29.630	0.00	0.00	0.00	3.69
4141	8549	8.664669	AAGGATGTTACAAATTAAATGAGGGT	57.335	30.769	0.00	0.00	0.00	4.34
4142	8550	9.586435	GAAAGGATGTTACAAATTAAATGAGGG	57.414	33.333	0.00	0.00	0.00	4.30
4158	8566	9.539194	AGATTTCATAAAAGGAGAAAGGATGTT	57.461	29.630	0.00	0.00	35.05	2.71
4233	8641	9.996554	AGGAACAAGAAAGAAAGAAAAAGAAAA	57.003	25.926	0.00	0.00	0.00	2.29
4234	8642	9.996554	AAGGAACAAGAAAGAAAGAAAAAGAAA	57.003	25.926	0.00	0.00	0.00	2.52
4235	8643	9.639601	GAAGGAACAAGAAAGAAAGAAAAAGAA	57.360	29.630	0.00	0.00	0.00	2.52
4236	8644	9.025041	AGAAGGAACAAGAAAGAAAGAAAAAGA	57.975	29.630	0.00	0.00	0.00	2.52
4237	8645	9.645059	AAGAAGGAACAAGAAAGAAAGAAAAAG	57.355	29.630	0.00	0.00	0.00	2.27
4238	8646	9.996554	AAAGAAGGAACAAGAAAGAAAGAAAAA	57.003	25.926	0.00	0.00	0.00	1.94
4239	8647	9.996554	AAAAGAAGGAACAAGAAAGAAAGAAAA	57.003	25.926	0.00	0.00	0.00	2.29
4240	8648	9.639601	GAAAAGAAGGAACAAGAAAGAAAGAAA	57.360	29.630	0.00	0.00	0.00	2.52
4241	8649	9.025041	AGAAAAGAAGGAACAAGAAAGAAAGAA	57.975	29.630	0.00	0.00	0.00	2.52
4242	8650	8.581253	AGAAAAGAAGGAACAAGAAAGAAAGA	57.419	30.769	0.00	0.00	0.00	2.52
4243	8651	9.645059	AAAGAAAAGAAGGAACAAGAAAGAAAG	57.355	29.630	0.00	0.00	0.00	2.62
4244	8652	9.639601	GAAAGAAAAGAAGGAACAAGAAAGAAA	57.360	29.630	0.00	0.00	0.00	2.52
4245	8653	9.025041	AGAAAGAAAAGAAGGAACAAGAAAGAA	57.975	29.630	0.00	0.00	0.00	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.