AutoCloner

Multiple sequence alignment - TraesCS4A01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G373400	chr4A	100.000	3116	0	0	1	3116	648796295	648793180	0.000000e+00	5755.0
1	TraesCS4A01G373400	chr4A	93.490	2166	112	16	962	3116	661280762	661278615	0.000000e+00	3192.0
2	TraesCS4A01G373400	chr4A	96.220	926	27	4	1	918	661282173	661281248	0.000000e+00	1509.0
3	TraesCS4A01G373400	chr4A	76.846	501	84	22	1731	2208	80406	79915	1.430000e-63	254.0
4	TraesCS4A01G373400	chr7A	92.091	2200	132	17	935	3116	41048830	41046655	0.000000e+00	3061.0
5	TraesCS4A01G373400	chr7A	93.478	92	6	0	4	95	41050110	41050019	1.510000e-28	137.0
6	TraesCS4A01G373400	chr7A	91.228	57	5	0	705	761	41049415	41049359	9.260000e-11	78.7
7	TraesCS4A01G373400	chr7A	91.667	48	3	1	847	894	41049228	41049182	7.210000e-07	65.8
8	TraesCS4A01G373400	chr7D	92.426	1360	68	12	951	2297	41601885	41600548	0.000000e+00	1908.0
9	TraesCS4A01G373400	chr7D	92.579	822	52	5	2303	3116	41600499	41599679	0.000000e+00	1171.0
10	TraesCS4A01G373400	chr7D	89.935	308	28	3	4	309	41604193	41603887	8.100000e-106	394.0
11	TraesCS4A01G373400	chr7D	90.909	77	7	0	610	686	41602233	41602157	1.530000e-18	104.0
12	TraesCS4A01G373400	chr7D	94.737	57	3	0	705	761	41602171	41602115	4.280000e-14	89.8
13	TraesCS4A01G373400	chr7D	96.226	53	2	0	847	899	41601964	41601912	1.540000e-13	87.9
14	TraesCS4A01G373400	chr1D	82.867	572	64	14	2443	3001	26268812	26268262	1.680000e-132	483.0
15	TraesCS4A01G373400	chr1B	82.609	575	66	13	2443	3001	41841947	41842503	7.820000e-131	477.0
16	TraesCS4A01G373400	chr3D	82.484	314	47	6	2443	2753	138901717	138901409	5.120000e-68	268.0
17	TraesCS4A01G373400	chr3D	82.105	285	46	4	1013	1296	520595042	520595322	4.020000e-59	239.0
18	TraesCS4A01G373400	chr3D	78.182	385	60	10	2443	2823	567930744	567931108	1.120000e-54	224.0
19	TraesCS4A01G373400	chr3D	82.171	258	38	6	2443	2694	569464708	569464453	6.770000e-52	215.0
20	TraesCS4A01G373400	chr3D	79.618	314	48	8	995	1294	569132396	569132707	8.760000e-51	211.0
21	TraesCS4A01G373400	chr3D	78.676	272	55	1	1022	1293	520430588	520430856	8.880000e-41	178.0
22	TraesCS4A01G373400	chr3D	77.926	299	52	13	1006	1296	565641940	565642232	1.150000e-39	174.0
23	TraesCS4A01G373400	chr3D	71.429	518	135	12	1616	2127	579399169	579399679	1.170000e-24	124.0
24	TraesCS4A01G373400	chr3D	78.977	176	33	4	1939	2112	568182087	568182260	1.960000e-22	117.0
25	TraesCS4A01G373400	chr3D	85.149	101	11	3	2862	2962	567518295	567518391	1.980000e-17	100.0
26	TraesCS4A01G373400	chr3D	83.696	92	11	3	2871	2962	569118224	569118137	1.990000e-12	84.2
27	TraesCS4A01G373400	chr3D	95.455	44	2	0	1348	1391	564151211	564151254	1.550000e-08	71.3
28	TraesCS4A01G373400	chr3D	93.182	44	3	0	1348	1391	565088309	565088352	7.210000e-07	65.8
29	TraesCS4A01G373400	chr4B	77.046	501	83	22	1731	2208	121723	121232	3.080000e-65	259.0
30	TraesCS4A01G373400	chr3B	81.699	306	50	4	2451	2753	201998556	201998254	1.860000e-62	250.0
31	TraesCS4A01G373400	chr3B	78.469	209	41	4	1921	2128	773882205	773882000	1.950000e-27	134.0
32	TraesCS4A01G373400	chr3B	80.208	96	10	7	1357	1443	753561328	753561423	2.590000e-06	63.9
33	TraesCS4A01G373400	chr3B	94.872	39	2	0	1353	1391	751943140	751943178	9.330000e-06	62.1
34	TraesCS4A01G373400	chr6D	79.213	356	65	6	1772	2121	2046849	2046497	4.020000e-59	239.0
35	TraesCS4A01G373400	chr6D	82.443	131	22	1	2443	2573	472763537	472763408	2.540000e-21	113.0
36	TraesCS4A01G373400	chr3A	86.735	196	26	0	993	1188	701643435	701643630	5.230000e-53	219.0
37	TraesCS4A01G373400	chr3A	79.791	287	53	4	1010	1295	700739306	700739588	1.470000e-48	204.0
38	TraesCS4A01G373400	chr3A	72.074	752	165	31	1402	2117	701643801	701644543	1.910000e-42	183.0
39	TraesCS4A01G373400	chr3A	72.865	527	117	23	1616	2128	714596283	714596797	1.160000e-34	158.0
40	TraesCS4A01G373400	chr3A	78.495	186	26	9	1348	1526	699533663	699533841	3.290000e-20	110.0
41	TraesCS4A01G373400	chr3A	85.263	95	10	3	2868	2962	701644749	701644839	9.200000e-16	95.3
42	TraesCS4A01G373400	chr3A	94.737	38	2	0	1354	1391	698739990	698740027	3.360000e-05	60.2
43	TraesCS4A01G373400	chr6A	80.714	280	39	8	2525	2799	794305	794036	1.470000e-48	204.0
44	TraesCS4A01G373400	chr6A	78.836	189	27	5	2682	2857	793257	793069	7.060000e-22	115.0
45	TraesCS4A01G373400	chr2B	76.056	355	60	14	2670	3005	773352586	773352934	8.940000e-36	161.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G373400	chr4A	648793180	648796295	3115	True	5755.000000	5755	100.000	1	3116	1	chr4A.!!$R2	3115
1	TraesCS4A01G373400	chr4A	661278615	661282173	3558	True	2350.500000	3192	94.855	1	3116	2	chr4A.!!$R3	3115
2	TraesCS4A01G373400	chr7A	41046655	41050110	3455	True	835.625000	3061	92.116	4	3116	4	chr7A.!!$R1	3112
3	TraesCS4A01G373400	chr7D	41599679	41604193	4514	True	625.783333	1908	92.802	4	3116	6	chr7D.!!$R1	3112
4	TraesCS4A01G373400	chr1D	26268262	26268812	550	True	483.000000	483	82.867	2443	3001	1	chr1D.!!$R1	558
5	TraesCS4A01G373400	chr1B	41841947	41842503	556	False	477.000000	477	82.609	2443	3001	1	chr1B.!!$F1	558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
969	2892	0.035458	CCACAACTCCACCACTCCTC	59.965	60.0	0.0	0.0	0.0	3.71	F
984	3379	0.611896	TCCTCGCACAGATCTCCACA	60.612	55.0	0.0	0.0	0.0	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1990	4400	0.458669	GCATGGAAACTGGCCATCAG	59.541	55.0	5.51	0.0	44.08	2.90	R
2125	4535	0.806868	CGTTGAGCCATTGACAGCAT	59.193	50.0	0.00	0.0	0.00	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	6.862711	AGAGTGTCCAACTAACTAAAAAGC	57.137	37.500	0.00	0.00	40.07	3.51
126	159	8.855110	TGAGACTAAAATGAGCAAAATAACCAA	58.145	29.630	0.00	0.00	0.00	3.67
468	517	2.891191	AATTGGGGTTTCTTCGGCTA	57.109	45.000	0.00	0.00	0.00	3.93
594	648	3.299503	ACTCCAAACACCTTGAAAGCAT	58.700	40.909	0.00	0.00	37.17	3.79
917	2839	3.122971	GGAACCTACCAACGCCGC	61.123	66.667	0.00	0.00	0.00	6.53
918	2840	3.122971	GAACCTACCAACGCCGCC	61.123	66.667	0.00	0.00	0.00	6.13
919	2841	3.600898	GAACCTACCAACGCCGCCT	62.601	63.158	0.00	0.00	0.00	5.52
920	2842	3.186656	AACCTACCAACGCCGCCTT	62.187	57.895	0.00	0.00	0.00	4.35
921	2843	3.124921	CCTACCAACGCCGCCTTG	61.125	66.667	0.00	0.00	0.00	3.61
922	2844	2.358247	CTACCAACGCCGCCTTGT	60.358	61.111	2.11	0.00	0.00	3.16
923	2845	2.357760	TACCAACGCCGCCTTGTC	60.358	61.111	2.11	0.00	0.00	3.18
924	2846	2.781595	CTACCAACGCCGCCTTGTCT	62.782	60.000	2.11	0.00	0.00	3.41
925	2847	2.775032	TACCAACGCCGCCTTGTCTC	62.775	60.000	2.11	0.00	0.00	3.36
926	2848	2.664851	CAACGCCGCCTTGTCTCA	60.665	61.111	0.00	0.00	0.00	3.27
927	2849	2.110213	AACGCCGCCTTGTCTCAA	59.890	55.556	0.00	0.00	0.00	3.02
928	2850	1.525077	AACGCCGCCTTGTCTCAAA	60.525	52.632	0.00	0.00	0.00	2.69
929	2851	1.098712	AACGCCGCCTTGTCTCAAAA	61.099	50.000	0.00	0.00	0.00	2.44
930	2852	1.098712	ACGCCGCCTTGTCTCAAAAA	61.099	50.000	0.00	0.00	0.00	1.94
969	2892	0.035458	CCACAACTCCACCACTCCTC	59.965	60.000	0.00	0.00	0.00	3.71
984	3379	0.611896	TCCTCGCACAGATCTCCACA	60.612	55.000	0.00	0.00	0.00	4.17
995	3390	1.690219	ATCTCCACATCCCGGTGAGC	61.690	60.000	0.00	0.00	41.32	4.26
1148	3552	4.830765	CGCCCGCGATTTCCTCCA	62.831	66.667	8.23	0.00	42.83	3.86
1153	3557	1.218047	CGCGATTTCCTCCAGTCCA	59.782	57.895	0.00	0.00	0.00	4.02
1159	3563	1.217916	TTTCCTCCAGTCCAACCACA	58.782	50.000	0.00	0.00	0.00	4.17
1188	3592	2.122189	GCCCAGCCCCTCCTCTAT	60.122	66.667	0.00	0.00	0.00	1.98
1536	3943	3.435327	TGTACCATGAAACAGATCAACGC	59.565	43.478	0.00	0.00	32.06	4.84
1543	3950	1.369091	AACAGATCAACGCGCCATCC	61.369	55.000	5.73	0.00	0.00	3.51
1560	3967	3.770933	CCATCCATGTTTTCTCCATTGGT	59.229	43.478	1.86	0.00	0.00	3.67
1678	4085	1.305219	AATGGCATTCGACACCACCG	61.305	55.000	6.96	0.00	35.99	4.94
1755	4165	2.042686	TTGCTATGGGTGACATGCTC	57.957	50.000	0.00	0.00	40.82	4.26
1774	4184	4.943705	TGCTCGGCATCTTCTTTCTTAATT	59.056	37.500	0.00	0.00	31.71	1.40
1863	4273	0.681175	GGGTTGAATTGCCTGTTGCT	59.319	50.000	0.00	0.00	42.00	3.91
1890	4300	2.558359	CAGGGACCAGTGTCAAAATTCC	59.442	50.000	0.00	0.00	43.65	3.01
1939	4349	1.069090	GGTGACGGTGAGTTGCTCA	59.931	57.895	0.00	0.00	38.25	4.26
1990	4400	3.633525	TCAGGTTGATATTGATGGCAAGC	59.366	43.478	0.00	0.00	37.45	4.01
1995	4405	5.220381	GTTGATATTGATGGCAAGCTGATG	58.780	41.667	0.00	0.00	37.45	3.07
2074	4484	4.069304	TGTTCAACATACCTTCTTTCCGG	58.931	43.478	0.00	0.00	0.00	5.14
2123	4533	2.878406	CACCTTTCATTTGACCAGACGT	59.122	45.455	0.00	0.00	0.00	4.34
2125	4535	4.513692	CACCTTTCATTTGACCAGACGTTA	59.486	41.667	0.00	0.00	0.00	3.18
2126	4536	5.181245	CACCTTTCATTTGACCAGACGTTAT	59.819	40.000	0.00	0.00	0.00	1.89
2127	4537	5.181245	ACCTTTCATTTGACCAGACGTTATG	59.819	40.000	0.00	0.00	0.00	1.90
2128	4538	4.678509	TTCATTTGACCAGACGTTATGC	57.321	40.909	0.00	0.00	0.00	3.14
2130	4540	3.684305	TCATTTGACCAGACGTTATGCTG	59.316	43.478	0.00	0.00	0.00	4.41
2131	4541	2.831685	TTGACCAGACGTTATGCTGT	57.168	45.000	0.00	0.00	0.00	4.40
2132	4542	2.363788	TGACCAGACGTTATGCTGTC	57.636	50.000	0.00	0.00	35.33	3.51
2133	4543	1.616374	TGACCAGACGTTATGCTGTCA	59.384	47.619	0.00	0.00	37.58	3.58
2134	4544	2.036604	TGACCAGACGTTATGCTGTCAA	59.963	45.455	9.67	0.00	37.58	3.18
2135	4545	3.262420	GACCAGACGTTATGCTGTCAAT	58.738	45.455	0.00	0.00	37.58	2.57
2136	4546	3.002791	ACCAGACGTTATGCTGTCAATG	58.997	45.455	0.00	0.00	37.58	2.82
2137	4547	2.352651	CCAGACGTTATGCTGTCAATGG	59.647	50.000	0.00	0.00	37.58	3.16
2138	4548	2.009774	AGACGTTATGCTGTCAATGGC	58.990	47.619	0.00	0.00	37.58	4.40
2213	4623	4.558226	ATGTCCACATGAGCTGTTCTAA	57.442	40.909	0.00	0.00	35.29	2.10
2214	4624	3.664107	TGTCCACATGAGCTGTTCTAAC	58.336	45.455	0.00	0.00	35.29	2.34
2341	4794	1.543944	CCCATTGGGTTGAAGTGGCC	61.544	60.000	14.10	0.00	38.25	5.36
2348	4801	2.280524	TTGAAGTGGCCGACGTGG	60.281	61.111	0.00	0.00	42.50	4.94
2418	4871	6.152154	TGTTTACCTATTGATCTGACTCGTGA	59.848	38.462	0.00	0.00	0.00	4.35
2511	4970	2.159324	TGCTTTTGTGTTGCATCGTTCA	60.159	40.909	0.00	0.00	0.00	3.18
2554	5016	6.768861	TCACTTTAGCTGCTAACCACTTTAAA	59.231	34.615	20.95	5.09	0.00	1.52
2638	5100	6.051717	TGATAAGCAGAAGAAAGGCTATCAC	58.948	40.000	0.00	0.00	36.76	3.06
2656	5118	2.601666	TGTCCGGCTCAGCTCACT	60.602	61.111	0.00	0.00	0.00	3.41
2704	5168	1.336131	TGCCAGCCATGCACTTTTTA	58.664	45.000	0.00	0.00	32.85	1.52
2713	5178	5.244626	AGCCATGCACTTTTTATCTTTGACT	59.755	36.000	0.00	0.00	0.00	3.41
2721	5187	6.198966	CACTTTTTATCTTTGACTGGCACAAC	59.801	38.462	0.00	0.00	38.70	3.32
2722	5188	5.843673	TTTTATCTTTGACTGGCACAACA	57.156	34.783	0.00	0.00	38.70	3.33
2723	5189	4.829064	TTATCTTTGACTGGCACAACAC	57.171	40.909	0.00	0.00	38.70	3.32
2728	5194	2.248280	TGACTGGCACAACACGTATT	57.752	45.000	0.00	0.00	38.70	1.89
2865	5346	6.812656	TGGCTAGCATGTTGATGTTAAAATTG	59.187	34.615	18.24	0.00	31.50	2.32
2917	5398	0.599728	GCCTGTCGATCTGCCTCATC	60.600	60.000	0.00	0.00	0.00	2.92
2964	5445	8.552083	AATGAAGAATTGCCTTGGTTTTTATC	57.448	30.769	0.00	0.00	0.00	1.75
2986	5469	9.640963	TTATCGAGTCTTCTTCTTTCTTAAAGG	57.359	33.333	0.00	0.00	39.01	3.11
2987	5470	5.927115	TCGAGTCTTCTTCTTTCTTAAAGGC	59.073	40.000	0.00	0.00	39.01	4.35
3022	5505	8.096414	GGTTTATTTACTGGAACCTACTGTGTA	58.904	37.037	0.00	0.00	38.74	2.90
3036	5519	8.951787	ACCTACTGTGTAATATAAATTCGCAA	57.048	30.769	0.00	0.00	0.00	4.85
3072	5556	9.094578	TGGGAATTACAAAATCAATTCTTGGTA	57.905	29.630	6.91	0.00	39.83	3.25
3073	5557	9.936759	GGGAATTACAAAATCAATTCTTGGTAA	57.063	29.630	6.91	0.00	39.83	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	5.120519	GCATGTCTGTTTTCTCTCTTCTCTG	59.879	44.000	0.00	0.00	0.00	3.35
324	359	2.808919	TCAACTACCTCTGGGAGACTG	58.191	52.381	2.38	0.29	36.25	3.51
332	367	6.516739	TCTGACATACTTCAACTACCTCTG	57.483	41.667	0.00	0.00	0.00	3.35
468	517	1.525077	TTTTTCGCTCACACGGCCT	60.525	52.632	0.00	0.00	0.00	5.19
697	2188	5.411669	ACAATAACATCGAAACTGTCCCTTC	59.588	40.000	0.00	0.00	0.00	3.46
698	2189	5.313712	ACAATAACATCGAAACTGTCCCTT	58.686	37.500	0.00	0.00	0.00	3.95
820	2727	1.062886	TCTACTGCTGCCTCCCACTAT	60.063	52.381	0.00	0.00	0.00	2.12
903	2825	3.633116	AAGGCGGCGTTGGTAGGT	61.633	61.111	9.37	0.00	0.00	3.08
905	2827	2.358247	ACAAGGCGGCGTTGGTAG	60.358	61.111	31.26	13.09	34.13	3.18
906	2828	2.357760	GACAAGGCGGCGTTGGTA	60.358	61.111	31.26	0.00	34.13	3.25
907	2829	4.250305	AGACAAGGCGGCGTTGGT	62.250	61.111	31.26	20.15	34.13	3.67
908	2830	3.423154	GAGACAAGGCGGCGTTGG	61.423	66.667	31.26	17.67	34.13	3.77
909	2831	1.781025	TTTGAGACAAGGCGGCGTTG	61.781	55.000	27.99	27.99	35.67	4.10
910	2832	1.098712	TTTTGAGACAAGGCGGCGTT	61.099	50.000	9.37	1.44	0.00	4.84
911	2833	1.098712	TTTTTGAGACAAGGCGGCGT	61.099	50.000	9.37	0.00	0.00	5.68
912	2834	1.652012	TTTTTGAGACAAGGCGGCG	59.348	52.632	0.51	0.51	0.00	6.46
929	2851	1.655885	GCGGCGTTGGTAGGTTTTT	59.344	52.632	9.37	0.00	0.00	1.94
930	2852	2.263021	GGCGGCGTTGGTAGGTTTT	61.263	57.895	9.37	0.00	0.00	2.43
931	2853	2.670592	GGCGGCGTTGGTAGGTTT	60.671	61.111	9.37	0.00	0.00	3.27
969	2892	0.531532	GGGATGTGGAGATCTGTGCG	60.532	60.000	0.00	0.00	0.00	5.34
1148	3552	4.265056	GGCGGGTGTGGTTGGACT	62.265	66.667	0.00	0.00	0.00	3.85
1175	3579	0.178918	GTGGCTATAGAGGAGGGGCT	60.179	60.000	3.21	0.00	0.00	5.19
1317	3721	0.903454	AACTCCCGTCGTCAATCCCT	60.903	55.000	0.00	0.00	0.00	4.20
1536	3943	1.462616	TGGAGAAAACATGGATGGCG	58.537	50.000	0.00	0.00	0.00	5.69
1543	3950	4.870123	TGGAACCAATGGAGAAAACATG	57.130	40.909	6.16	0.00	0.00	3.21
1560	3967	4.697756	CTCGGCGGCTGGTTGGAA	62.698	66.667	7.21	0.00	0.00	3.53
1755	4165	9.787532	TTTTCATAATTAAGAAAGAAGATGCCG	57.212	29.630	13.75	0.00	35.41	5.69
1774	4184	7.201574	CCAAATATCAACGGTCGTCTTTTCATA	60.202	37.037	0.00	0.00	0.00	2.15
1863	4273	1.203174	TGACACTGGTCCCTGATCTCA	60.203	52.381	0.00	0.00	43.65	3.27
1890	4300	3.819337	CCATCACTTCCTCAATATGGCTG	59.181	47.826	0.00	0.00	0.00	4.85
1939	4349	2.158667	AGTCCTCAAAACCGACCAACAT	60.159	45.455	0.00	0.00	0.00	2.71
1990	4400	0.458669	GCATGGAAACTGGCCATCAG	59.541	55.000	5.51	0.00	44.08	2.90
1995	4405	1.304381	TCTGGCATGGAAACTGGCC	60.304	57.895	0.00	0.00	46.29	5.36
2074	4484	4.054780	TGATAACATAACCCTCGAGTGC	57.945	45.455	12.31	0.00	0.00	4.40
2123	4533	2.419673	CGTTGAGCCATTGACAGCATAA	59.580	45.455	0.00	0.00	0.00	1.90
2125	4535	0.806868	CGTTGAGCCATTGACAGCAT	59.193	50.000	0.00	0.00	0.00	3.79
2126	4536	1.855213	GCGTTGAGCCATTGACAGCA	61.855	55.000	0.00	0.00	40.81	4.41
2127	4537	1.154150	GCGTTGAGCCATTGACAGC	60.154	57.895	0.00	0.00	40.81	4.40
2137	4547	5.156523	ACTCAATAACCCTAAGCGTTGAGC	61.157	45.833	11.55	0.00	43.75	4.26
2138	4548	4.330074	CACTCAATAACCCTAAGCGTTGAG	59.670	45.833	10.40	10.40	44.82	3.02
2274	4684	6.105333	AGTCACAGCTTCTTGATCATACTTC	58.895	40.000	0.00	0.00	0.00	3.01
2324	4777	0.893270	TCGGCCACTTCAACCCAATG	60.893	55.000	2.24	0.00	0.00	2.82
2325	4778	0.893727	GTCGGCCACTTCAACCCAAT	60.894	55.000	2.24	0.00	0.00	3.16
2341	4794	2.357327	TAGAATTCACACCCACGTCG	57.643	50.000	8.44	0.00	0.00	5.12
2398	4851	4.274147	AGTCACGAGTCAGATCAATAGGT	58.726	43.478	0.00	0.00	0.00	3.08
2479	4938	7.706159	TGCAACACAAAAGCAGGAATATATAG	58.294	34.615	0.00	0.00	33.75	1.31
2481	4940	6.528537	TGCAACACAAAAGCAGGAATATAT	57.471	33.333	0.00	0.00	33.75	0.86
2486	4945	2.543445	CGATGCAACACAAAAGCAGGAA	60.543	45.455	0.00	0.00	42.14	3.36
2511	4970	7.807977	AAAGTGAAGTGATTGATACAACACT	57.192	32.000	0.00	0.00	43.92	3.55
2554	5016	3.053842	ACACCAGATGAAGCATTGATCCT	60.054	43.478	0.00	0.00	39.69	3.24
2638	5100	2.125753	GTGAGCTGAGCCGGACAG	60.126	66.667	19.97	19.97	38.27	3.51
2656	5118	2.673775	TCAAAAGGGGAGCACAATCA	57.326	45.000	0.00	0.00	0.00	2.57
2704	5168	1.603802	CGTGTTGTGCCAGTCAAAGAT	59.396	47.619	0.00	0.00	0.00	2.40
2713	5178	4.095185	GCCTAATTAATACGTGTTGTGCCA	59.905	41.667	7.91	0.00	0.00	4.92
2721	5187	3.782656	AGGGGGCCTAATTAATACGTG	57.217	47.619	0.84	0.00	28.47	4.49
2722	5188	5.095809	TCATAGGGGGCCTAATTAATACGT	58.904	41.667	0.84	0.00	39.77	3.57
2723	5189	5.671493	CTCATAGGGGGCCTAATTAATACG	58.329	45.833	0.84	0.00	39.77	3.06
2728	5194	2.275466	GGCTCATAGGGGGCCTAATTA	58.725	52.381	0.84	0.00	39.77	1.40
2865	5346	1.322040	CGCCGACCAAAACAACAAAAC	59.678	47.619	0.00	0.00	0.00	2.43
2917	5398	5.998454	TTCAGAGAAAAACAAGCAGAGAG	57.002	39.130	0.00	0.00	0.00	3.20
2964	5445	5.120986	GGCCTTTAAGAAAGAAGAAGACTCG	59.879	44.000	0.00	0.00	41.02	4.18
3036	5519	9.184523	TGATTTTGTAATTCCCAGAATTCGTAT	57.815	29.630	5.86	0.00	0.00	3.06
3072	5556	1.374947	CCCGGTGGTCAGTCATGTT	59.625	57.895	0.00	0.00	0.00	2.71
3073	5557	0.543410	TACCCGGTGGTCAGTCATGT	60.543	55.000	0.00	0.00	43.06	3.21

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.