Multiple sequence alignment - TraesCS4A01G373200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G373200 chr4A 100.000 2460 0 0 1 2460 648653225 648655684 0.000000e+00 4543.0
1 TraesCS4A01G373200 chr4A 88.889 639 49 8 1318 1943 648261405 648262034 0.000000e+00 767.0
2 TraesCS4A01G373200 chr4A 88.328 574 52 5 1301 1872 648133865 648134425 0.000000e+00 675.0
3 TraesCS4A01G373200 chr4A 91.611 298 23 2 965 1261 648133498 648133794 6.330000e-111 411.0
4 TraesCS4A01G373200 chr4A 89.226 297 32 0 965 1261 648261025 648261321 2.990000e-99 372.0
5 TraesCS4A01G373200 chr4A 85.424 295 43 0 965 1259 648337337 648337631 8.550000e-80 307.0
6 TraesCS4A01G373200 chr4A 89.372 207 13 4 1562 1765 648136730 648136930 4.060000e-63 252.0
7 TraesCS4A01G373200 chr4A 93.966 116 7 0 1755 1870 648137203 648137318 2.510000e-40 176.0
8 TraesCS4A01G373200 chr4A 84.127 126 16 4 1338 1461 648671985 648672108 4.300000e-23 119.0
9 TraesCS4A01G373200 chr4A 83.088 136 16 5 1328 1461 648582733 648582863 1.550000e-22 117.0
10 TraesCS4A01G373200 chr4A 78.226 124 20 7 1946 2066 555941483 555941364 3.390000e-09 73.1
11 TraesCS4A01G373200 chr7A 98.755 964 12 0 1 964 734991211 734992174 0.000000e+00 1714.0
12 TraesCS4A01G373200 chr7A 86.282 780 64 14 965 1717 40695400 40696163 0.000000e+00 808.0
13 TraesCS4A01G373200 chr7A 92.574 202 14 1 1715 1916 40696212 40696412 3.100000e-74 289.0
14 TraesCS4A01G373200 chr7A 89.224 232 23 2 2223 2452 40697059 40697290 3.100000e-74 289.0
15 TraesCS4A01G373200 chr7A 91.892 148 12 0 1751 1898 40951180 40951327 8.920000e-50 207.0
16 TraesCS4A01G373200 chr7A 77.444 133 25 5 2004 2134 511032701 511032830 9.430000e-10 75.0
17 TraesCS4A01G373200 chr5B 98.651 964 13 0 1 964 257006598 257005635 0.000000e+00 1709.0
18 TraesCS4A01G373200 chr5B 98.345 967 13 1 1 964 622519690 622520656 0.000000e+00 1694.0
19 TraesCS4A01G373200 chr5B 98.340 964 16 0 1 964 109103321 109102358 0.000000e+00 1692.0
20 TraesCS4A01G373200 chr1B 98.449 967 15 0 1 967 60588844 60587878 0.000000e+00 1703.0
21 TraesCS4A01G373200 chr1B 98.449 967 12 1 1 964 44508094 44507128 0.000000e+00 1700.0
22 TraesCS4A01G373200 chr1B 76.423 123 25 4 2004 2123 547403415 547403536 2.040000e-06 63.9
23 TraesCS4A01G373200 chrUn 98.449 967 12 1 1 964 87134962 87135928 0.000000e+00 1700.0
24 TraesCS4A01G373200 chrUn 87.726 277 34 0 965 1241 48835933 48836209 8.480000e-85 324.0
25 TraesCS4A01G373200 chrUn 84.946 93 12 2 1353 1444 48826707 48826798 2.600000e-15 93.5
26 TraesCS4A01G373200 chr2B 98.345 967 12 2 1 964 132809750 132810715 0.000000e+00 1694.0
27 TraesCS4A01G373200 chr7B 98.237 964 17 0 1 964 702201200 702200237 0.000000e+00 1687.0
28 TraesCS4A01G373200 chr7D 91.071 784 53 7 965 1740 41259595 41260369 0.000000e+00 1044.0
29 TraesCS4A01G373200 chr7D 91.147 497 34 6 965 1461 41325437 41325923 0.000000e+00 665.0
30 TraesCS4A01G373200 chr7D 90.782 499 37 5 965 1461 41365840 41365349 0.000000e+00 658.0
31 TraesCS4A01G373200 chr7D 89.078 293 32 0 965 1257 41343643 41343351 5.000000e-97 364.0
32 TraesCS4A01G373200 chr3D 88.889 189 21 0 2264 2452 512709608 512709420 1.470000e-57 233.0
33 TraesCS4A01G373200 chr3D 82.937 252 22 9 1944 2192 293605289 293605522 8.920000e-50 207.0
34 TraesCS4A01G373200 chr4D 85.782 211 28 2 1944 2152 122284335 122284125 3.180000e-54 222.0
35 TraesCS4A01G373200 chr3B 86.667 195 18 2 2270 2456 675284055 675283861 2.480000e-50 209.0
36 TraesCS4A01G373200 chr3B 86.885 61 8 0 2005 2065 43117118 43117178 4.390000e-08 69.4
37 TraesCS4A01G373200 chr4B 91.892 111 8 1 2094 2203 474482433 474482543 1.180000e-33 154.0
38 TraesCS4A01G373200 chr1D 81.890 127 15 8 1942 2066 307231231 307231351 1.560000e-17 100.0
39 TraesCS4A01G373200 chr1D 79.675 123 20 5 1947 2066 410503204 410503084 1.570000e-12 84.2
40 TraesCS4A01G373200 chr1D 85.484 62 9 0 2266 2327 122902410 122902471 5.680000e-07 65.8
41 TraesCS4A01G373200 chr3A 80.952 126 21 3 1943 2066 142577084 142576960 2.010000e-16 97.1
42 TraesCS4A01G373200 chr5A 80.952 126 19 4 1944 2066 543061843 543061966 7.240000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G373200 chr4A 648653225 648655684 2459 False 4543.0 4543 100.00000 1 2460 1 chr4A.!!$F3 2459
1 TraesCS4A01G373200 chr4A 648261025 648262034 1009 False 569.5 767 89.05750 965 1943 2 chr4A.!!$F6 978
2 TraesCS4A01G373200 chr4A 648133498 648137318 3820 False 378.5 675 90.81925 965 1872 4 chr4A.!!$F5 907
3 TraesCS4A01G373200 chr7A 734991211 734992174 963 False 1714.0 1714 98.75500 1 964 1 chr7A.!!$F3 963
4 TraesCS4A01G373200 chr7A 40695400 40697290 1890 False 462.0 808 89.36000 965 2452 3 chr7A.!!$F4 1487
5 TraesCS4A01G373200 chr5B 257005635 257006598 963 True 1709.0 1709 98.65100 1 964 1 chr5B.!!$R2 963
6 TraesCS4A01G373200 chr5B 622519690 622520656 966 False 1694.0 1694 98.34500 1 964 1 chr5B.!!$F1 963
7 TraesCS4A01G373200 chr5B 109102358 109103321 963 True 1692.0 1692 98.34000 1 964 1 chr5B.!!$R1 963
8 TraesCS4A01G373200 chr1B 60587878 60588844 966 True 1703.0 1703 98.44900 1 967 1 chr1B.!!$R2 966
9 TraesCS4A01G373200 chr1B 44507128 44508094 966 True 1700.0 1700 98.44900 1 964 1 chr1B.!!$R1 963
10 TraesCS4A01G373200 chrUn 87134962 87135928 966 False 1700.0 1700 98.44900 1 964 1 chrUn.!!$F3 963
11 TraesCS4A01G373200 chr2B 132809750 132810715 965 False 1694.0 1694 98.34500 1 964 1 chr2B.!!$F1 963
12 TraesCS4A01G373200 chr7B 702200237 702201200 963 True 1687.0 1687 98.23700 1 964 1 chr7B.!!$R1 963
13 TraesCS4A01G373200 chr7D 41259595 41260369 774 False 1044.0 1044 91.07100 965 1740 1 chr7D.!!$F1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 2.034048 GATGGAGGAGAGGTTCGCCC 62.034 65.0 0.0 0.0 37.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 5494 0.034616 GAGATGGATCGGGCAGAAGG 59.965 60.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 2.034048 GATGGAGGAGAGGTTCGCCC 62.034 65.000 0.00 0.00 37.00 6.13
695 696 3.144193 AGCGGCCTCGAGAGAAGG 61.144 66.667 15.71 0.00 41.32 3.46
863 867 7.171678 GTGATACCATGTAAGACAATAGGCTTC 59.828 40.741 0.00 0.00 0.00 3.86
867 871 3.101437 TGTAAGACAATAGGCTTCGGGA 58.899 45.455 0.00 0.00 0.00 5.14
1000 1004 3.449227 CCGTGGTAGAGGCGCTGA 61.449 66.667 7.64 0.00 0.00 4.26
1290 1317 3.885297 CCGCCCATCACAAGAAGATAAAT 59.115 43.478 0.00 0.00 0.00 1.40
1299 1336 5.488919 TCACAAGAAGATAAATCTCCCCACT 59.511 40.000 0.00 0.00 35.76 4.00
1391 1428 0.603707 CAACTTCTTCCTCTGCGCCA 60.604 55.000 4.18 0.00 0.00 5.69
1419 1456 2.583739 GACGCTCAGATCAGATCATCG 58.416 52.381 13.14 11.39 0.00 3.84
1442 1479 1.001293 TGCTTCTTCGCTCATCACTGT 59.999 47.619 0.00 0.00 0.00 3.55
1463 1500 3.937706 GTCATGTCTTGATGTCTGAAGGG 59.062 47.826 0.00 0.00 36.54 3.95
1467 1504 3.008375 TGTCTTGATGTCTGAAGGGAAGG 59.992 47.826 0.00 0.00 0.00 3.46
1479 1516 1.136329 AGGGAAGGAGTGTGTGCCAT 61.136 55.000 0.00 0.00 0.00 4.40
1480 1517 0.962356 GGGAAGGAGTGTGTGCCATG 60.962 60.000 0.00 0.00 0.00 3.66
1481 1518 0.250901 GGAAGGAGTGTGTGCCATGT 60.251 55.000 0.00 0.00 0.00 3.21
1482 1519 1.003118 GGAAGGAGTGTGTGCCATGTA 59.997 52.381 0.00 0.00 0.00 2.29
1483 1520 2.552155 GGAAGGAGTGTGTGCCATGTAA 60.552 50.000 0.00 0.00 0.00 2.41
1484 1521 2.949177 AGGAGTGTGTGCCATGTAAA 57.051 45.000 0.00 0.00 0.00 2.01
1485 1522 3.439857 AGGAGTGTGTGCCATGTAAAT 57.560 42.857 0.00 0.00 0.00 1.40
1550 1591 3.005472 ACTGACGTTCGATCCTTCTTTGA 59.995 43.478 0.00 0.00 0.00 2.69
1560 1601 4.572389 CGATCCTTCTTTGATTGATCGGTT 59.428 41.667 11.25 0.00 46.63 4.44
1594 1635 6.183360 CCTCTGGATCAAATGTGTACGTAGTA 60.183 42.308 0.00 0.00 45.11 1.82
1650 1695 6.726230 ACGATACATATAGATACATGTCCGC 58.274 40.000 0.00 0.00 36.74 5.54
1732 4444 5.357596 TGCAACGTATATGTGTGTACCTAGA 59.642 40.000 0.00 0.00 0.00 2.43
1756 4468 4.115199 AGGGGCCATCTTGTCCGC 62.115 66.667 4.39 0.00 0.00 5.54
1775 4770 1.771073 CGAGGCACACGCAACTGAAA 61.771 55.000 0.00 0.00 41.24 2.69
1922 4924 4.721776 AGGGGCTATCTTCATGTTGAGTAA 59.278 41.667 0.00 0.00 0.00 2.24
1934 4936 2.162681 GTTGAGTAATTGCTGGGCAGT 58.837 47.619 0.00 0.00 40.61 4.40
1955 4957 7.388460 CAGTTGATGCTAGAAAGAATTCCTT 57.612 36.000 0.65 0.00 36.12 3.36
1958 4960 7.449704 AGTTGATGCTAGAAAGAATTCCTTGTT 59.550 33.333 0.65 0.00 36.12 2.83
1959 4961 7.765695 TGATGCTAGAAAGAATTCCTTGTTT 57.234 32.000 0.65 0.00 36.12 2.83
1962 4964 9.561270 GATGCTAGAAAGAATTCCTTGTTTAAC 57.439 33.333 0.65 0.00 36.12 2.01
1963 4965 8.458573 TGCTAGAAAGAATTCCTTGTTTAACA 57.541 30.769 0.65 0.00 36.12 2.41
1964 4966 8.349983 TGCTAGAAAGAATTCCTTGTTTAACAC 58.650 33.333 0.65 0.00 36.12 3.32
1966 4968 9.884465 CTAGAAAGAATTCCTTGTTTAACACTG 57.116 33.333 0.65 0.00 36.12 3.66
1984 4986 9.896263 TTAACACTGTATTAAATTTCGTTTCCC 57.104 29.630 0.00 0.00 0.00 3.97
1985 4987 7.754851 ACACTGTATTAAATTTCGTTTCCCT 57.245 32.000 0.00 0.00 0.00 4.20
1986 4988 8.851541 ACACTGTATTAAATTTCGTTTCCCTA 57.148 30.769 0.00 0.00 0.00 3.53
1987 4989 9.457436 ACACTGTATTAAATTTCGTTTCCCTAT 57.543 29.630 0.00 0.00 0.00 2.57
1994 4996 9.634163 ATTAAATTTCGTTTCCCTATTTGACAC 57.366 29.630 0.00 0.00 0.00 3.67
1995 4997 5.638596 ATTTCGTTTCCCTATTTGACACC 57.361 39.130 0.00 0.00 0.00 4.16
1997 4999 1.735571 CGTTTCCCTATTTGACACCGG 59.264 52.381 0.00 0.00 0.00 5.28
1998 5000 2.613474 CGTTTCCCTATTTGACACCGGA 60.613 50.000 9.46 0.00 0.00 5.14
1999 5001 3.617284 GTTTCCCTATTTGACACCGGAT 58.383 45.455 9.46 0.00 0.00 4.18
2001 5003 4.310022 TTCCCTATTTGACACCGGATTT 57.690 40.909 9.46 0.00 0.00 2.17
2041 5297 6.803154 AACACTAAGTCTAAGTTTCATGCC 57.197 37.500 0.00 0.00 0.00 4.40
2044 5300 6.998673 ACACTAAGTCTAAGTTTCATGCCTTT 59.001 34.615 0.00 0.00 0.00 3.11
2045 5301 7.502561 ACACTAAGTCTAAGTTTCATGCCTTTT 59.497 33.333 0.00 0.00 0.00 2.27
2046 5302 8.999431 CACTAAGTCTAAGTTTCATGCCTTTTA 58.001 33.333 0.00 0.00 0.00 1.52
2051 5307 9.515226 AGTCTAAGTTTCATGCCTTTTATAACA 57.485 29.630 0.00 0.00 0.00 2.41
2057 5405 8.299570 AGTTTCATGCCTTTTATAACACTTCTG 58.700 33.333 0.00 0.00 0.00 3.02
2066 5414 9.981114 CCTTTTATAACACTTCTGTCCATTTTT 57.019 29.630 0.00 0.00 0.00 1.94
2098 5446 7.636259 TGATGTTAACTTGCATGTAAAAAGC 57.364 32.000 5.56 0.00 0.00 3.51
2100 5448 5.907207 TGTTAACTTGCATGTAAAAAGCCA 58.093 33.333 5.56 0.00 0.00 4.75
2102 5450 4.670896 AACTTGCATGTAAAAAGCCACT 57.329 36.364 5.56 0.00 0.00 4.00
2103 5451 4.670896 ACTTGCATGTAAAAAGCCACTT 57.329 36.364 2.92 0.00 0.00 3.16
2104 5452 5.022282 ACTTGCATGTAAAAAGCCACTTT 57.978 34.783 2.92 0.00 34.94 2.66
2105 5453 5.427378 ACTTGCATGTAAAAAGCCACTTTT 58.573 33.333 2.92 0.00 44.27 2.27
2106 5454 5.294060 ACTTGCATGTAAAAAGCCACTTTTG 59.706 36.000 2.92 0.00 41.98 2.44
2107 5455 3.559242 TGCATGTAAAAAGCCACTTTTGC 59.441 39.130 6.11 6.44 41.98 3.68
2108 5456 3.058983 GCATGTAAAAAGCCACTTTTGCC 60.059 43.478 6.11 1.68 41.98 4.52
2109 5457 3.186702 TGTAAAAAGCCACTTTTGCCC 57.813 42.857 6.11 0.00 41.98 5.36
2110 5458 2.769095 TGTAAAAAGCCACTTTTGCCCT 59.231 40.909 6.11 0.00 41.98 5.19
2111 5459 3.198853 TGTAAAAAGCCACTTTTGCCCTT 59.801 39.130 6.11 0.00 41.98 3.95
2114 5462 1.720781 AAGCCACTTTTGCCCTTCAT 58.279 45.000 0.00 0.00 0.00 2.57
2115 5463 0.971386 AGCCACTTTTGCCCTTCATG 59.029 50.000 0.00 0.00 0.00 3.07
2116 5464 0.681175 GCCACTTTTGCCCTTCATGT 59.319 50.000 0.00 0.00 0.00 3.21
2117 5465 1.892474 GCCACTTTTGCCCTTCATGTA 59.108 47.619 0.00 0.00 0.00 2.29
2118 5466 2.298729 GCCACTTTTGCCCTTCATGTAA 59.701 45.455 0.00 0.00 0.00 2.41
2119 5467 3.055891 GCCACTTTTGCCCTTCATGTAAT 60.056 43.478 0.00 0.00 0.00 1.89
2120 5468 4.159506 GCCACTTTTGCCCTTCATGTAATA 59.840 41.667 0.00 0.00 0.00 0.98
2121 5469 5.163416 GCCACTTTTGCCCTTCATGTAATAT 60.163 40.000 0.00 0.00 0.00 1.28
2122 5470 6.275335 CCACTTTTGCCCTTCATGTAATATG 58.725 40.000 0.00 0.00 0.00 1.78
2124 5472 7.363705 CCACTTTTGCCCTTCATGTAATATGAA 60.364 37.037 0.00 0.00 36.67 2.57
2127 5475 4.469657 TGCCCTTCATGTAATATGAACCC 58.530 43.478 0.00 0.00 34.66 4.11
2128 5476 3.502211 GCCCTTCATGTAATATGAACCCG 59.498 47.826 0.00 0.00 34.66 5.28
2129 5477 3.502211 CCCTTCATGTAATATGAACCCGC 59.498 47.826 0.00 0.00 34.66 6.13
2130 5478 3.502211 CCTTCATGTAATATGAACCCGCC 59.498 47.826 0.00 0.00 34.66 6.13
2131 5479 3.847671 TCATGTAATATGAACCCGCCA 57.152 42.857 0.00 0.00 0.00 5.69
2132 5480 4.365514 TCATGTAATATGAACCCGCCAT 57.634 40.909 0.00 0.00 0.00 4.40
2133 5481 4.323417 TCATGTAATATGAACCCGCCATC 58.677 43.478 0.00 0.00 0.00 3.51
2135 5483 2.224670 TGTAATATGAACCCGCCATCCC 60.225 50.000 0.00 0.00 0.00 3.85
2137 5485 2.748058 ATATGAACCCGCCATCCCGC 62.748 60.000 0.00 0.00 0.00 6.13
2143 5491 4.473520 CCGCCATCCCGCAGAAGT 62.474 66.667 0.00 0.00 0.00 3.01
2144 5492 2.892425 CGCCATCCCGCAGAAGTC 60.892 66.667 0.00 0.00 0.00 3.01
2145 5493 2.892425 GCCATCCCGCAGAAGTCG 60.892 66.667 0.00 0.00 0.00 4.18
2146 5494 2.892425 CCATCCCGCAGAAGTCGC 60.892 66.667 0.00 0.00 0.00 5.19
2147 5495 2.892425 CATCCCGCAGAAGTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
2148 5496 3.077556 ATCCCGCAGAAGTCGCCT 61.078 61.111 0.00 0.00 0.00 5.52
2149 5497 2.660064 ATCCCGCAGAAGTCGCCTT 61.660 57.895 0.00 0.00 0.00 4.35
2150 5498 2.579684 ATCCCGCAGAAGTCGCCTTC 62.580 60.000 0.00 0.00 46.23 3.46
2156 5504 2.815647 GAAGTCGCCTTCTGCCCG 60.816 66.667 0.00 0.00 43.18 6.13
2157 5505 3.296709 GAAGTCGCCTTCTGCCCGA 62.297 63.158 0.00 0.00 43.18 5.14
2159 5507 2.579684 AAGTCGCCTTCTGCCCGATC 62.580 60.000 0.00 0.00 36.24 3.69
2160 5508 3.849951 TCGCCTTCTGCCCGATCC 61.850 66.667 0.00 0.00 36.24 3.36
2161 5509 4.161295 CGCCTTCTGCCCGATCCA 62.161 66.667 0.00 0.00 36.24 3.41
2163 5511 1.599240 GCCTTCTGCCCGATCCATC 60.599 63.158 0.00 0.00 0.00 3.51
2169 5517 1.688884 TGCCCGATCCATCTCCACA 60.689 57.895 0.00 0.00 0.00 4.17
2170 5518 1.070445 GCCCGATCCATCTCCACAG 59.930 63.158 0.00 0.00 0.00 3.66
2171 5519 1.750930 CCCGATCCATCTCCACAGG 59.249 63.158 0.00 0.00 0.00 4.00
2172 5520 1.050988 CCCGATCCATCTCCACAGGT 61.051 60.000 0.00 0.00 0.00 4.00
2173 5521 0.390860 CCGATCCATCTCCACAGGTC 59.609 60.000 0.00 0.00 0.00 3.85
2174 5522 0.390860 CGATCCATCTCCACAGGTCC 59.609 60.000 0.00 0.00 0.00 4.46
2175 5523 0.761802 GATCCATCTCCACAGGTCCC 59.238 60.000 0.00 0.00 0.00 4.46
2177 5525 0.044702 TCCATCTCCACAGGTCCCAT 59.955 55.000 0.00 0.00 0.00 4.00
2178 5526 0.471617 CCATCTCCACAGGTCCCATC 59.528 60.000 0.00 0.00 0.00 3.51
2180 5528 0.344790 ATCTCCACAGGTCCCATCCT 59.655 55.000 0.00 0.00 38.51 3.24
2181 5529 0.325671 TCTCCACAGGTCCCATCCTC 60.326 60.000 0.00 0.00 35.37 3.71
2183 5531 0.325671 TCCACAGGTCCCATCCTCTC 60.326 60.000 0.00 0.00 35.37 3.20
2184 5532 1.341156 CCACAGGTCCCATCCTCTCC 61.341 65.000 0.00 0.00 35.37 3.71
2185 5533 0.326048 CACAGGTCCCATCCTCTCCT 60.326 60.000 0.00 0.00 35.37 3.69
2186 5534 0.419459 ACAGGTCCCATCCTCTCCTT 59.581 55.000 0.00 0.00 35.37 3.36
2187 5535 1.127343 CAGGTCCCATCCTCTCCTTC 58.873 60.000 0.00 0.00 35.37 3.46
2188 5536 1.022903 AGGTCCCATCCTCTCCTTCT 58.977 55.000 0.00 0.00 31.32 2.85
2189 5537 1.062505 AGGTCCCATCCTCTCCTTCTC 60.063 57.143 0.00 0.00 31.32 2.87
2192 5540 0.766288 CCCATCCTCTCCTTCTCCCC 60.766 65.000 0.00 0.00 0.00 4.81
2195 5543 2.416638 CATCCTCTCCTTCTCCCCATT 58.583 52.381 0.00 0.00 0.00 3.16
2196 5544 2.182516 TCCTCTCCTTCTCCCCATTC 57.817 55.000 0.00 0.00 0.00 2.67
2197 5545 1.366082 TCCTCTCCTTCTCCCCATTCA 59.634 52.381 0.00 0.00 0.00 2.57
2198 5546 1.767681 CCTCTCCTTCTCCCCATTCAG 59.232 57.143 0.00 0.00 0.00 3.02
2199 5547 2.628021 CCTCTCCTTCTCCCCATTCAGA 60.628 54.545 0.00 0.00 0.00 3.27
2200 5548 3.316501 CTCTCCTTCTCCCCATTCAGAT 58.683 50.000 0.00 0.00 0.00 2.90
2201 5549 3.715834 CTCTCCTTCTCCCCATTCAGATT 59.284 47.826 0.00 0.00 0.00 2.40
2203 5551 3.715834 CTCCTTCTCCCCATTCAGATTCT 59.284 47.826 0.00 0.00 0.00 2.40
2205 5553 4.541714 TCCTTCTCCCCATTCAGATTCTTT 59.458 41.667 0.00 0.00 0.00 2.52
2206 5554 5.015603 TCCTTCTCCCCATTCAGATTCTTTT 59.984 40.000 0.00 0.00 0.00 2.27
2207 5555 5.718607 CCTTCTCCCCATTCAGATTCTTTTT 59.281 40.000 0.00 0.00 0.00 1.94
2208 5556 6.350780 CCTTCTCCCCATTCAGATTCTTTTTG 60.351 42.308 0.00 0.00 0.00 2.44
2209 5557 5.644188 TCTCCCCATTCAGATTCTTTTTGT 58.356 37.500 0.00 0.00 0.00 2.83
2210 5558 5.477984 TCTCCCCATTCAGATTCTTTTTGTG 59.522 40.000 0.00 0.00 0.00 3.33
2211 5559 5.392995 TCCCCATTCAGATTCTTTTTGTGA 58.607 37.500 0.00 0.00 0.00 3.58
2212 5560 6.018469 TCCCCATTCAGATTCTTTTTGTGAT 58.982 36.000 0.00 0.00 0.00 3.06
2213 5561 6.071221 TCCCCATTCAGATTCTTTTTGTGATG 60.071 38.462 0.00 0.00 0.00 3.07
2215 5563 7.093814 CCCCATTCAGATTCTTTTTGTGATGTA 60.094 37.037 0.00 0.00 0.00 2.29
2216 5564 7.756722 CCCATTCAGATTCTTTTTGTGATGTAC 59.243 37.037 0.00 0.00 0.00 2.90
2217 5565 8.517878 CCATTCAGATTCTTTTTGTGATGTACT 58.482 33.333 0.00 0.00 0.00 2.73
2218 5566 9.338291 CATTCAGATTCTTTTTGTGATGTACTG 57.662 33.333 0.00 0.00 0.00 2.74
2219 5567 7.439157 TCAGATTCTTTTTGTGATGTACTGG 57.561 36.000 0.00 0.00 0.00 4.00
2221 5569 7.173218 TCAGATTCTTTTTGTGATGTACTGGAC 59.827 37.037 0.00 0.00 0.00 4.02
2222 5570 7.173907 CAGATTCTTTTTGTGATGTACTGGACT 59.826 37.037 0.00 0.00 0.00 3.85
2223 5571 6.618287 TTCTTTTTGTGATGTACTGGACTG 57.382 37.500 0.00 0.00 0.00 3.51
2224 5572 5.063204 TCTTTTTGTGATGTACTGGACTGG 58.937 41.667 0.00 0.00 0.00 4.00
2226 5585 4.431416 TTTGTGATGTACTGGACTGGTT 57.569 40.909 0.00 0.00 0.00 3.67
2229 5588 4.787551 TGTGATGTACTGGACTGGTTTTT 58.212 39.130 0.00 0.00 0.00 1.94
2235 5594 9.173021 TGATGTACTGGACTGGTTTTTATTATG 57.827 33.333 0.00 0.00 0.00 1.90
2315 5674 3.821033 ACACCCAAGACATAGCAGAAAAC 59.179 43.478 0.00 0.00 0.00 2.43
2317 5676 3.074538 ACCCAAGACATAGCAGAAAACCT 59.925 43.478 0.00 0.00 0.00 3.50
2323 5682 4.042187 AGACATAGCAGAAAACCTGAACCT 59.958 41.667 0.00 0.00 45.78 3.50
2331 5690 3.319122 AGAAAACCTGAACCTGAACATGC 59.681 43.478 0.00 0.00 0.00 4.06
2342 5701 0.321346 TGAACATGCGCCTCTTCTGA 59.679 50.000 4.18 0.00 0.00 3.27
2364 5723 2.424234 CCAGAGAGGGAGTTAGAGGAGG 60.424 59.091 0.00 0.00 0.00 4.30
2368 5727 0.259356 AGGGAGTTAGAGGAGGACCG 59.741 60.000 0.00 0.00 41.83 4.79
2375 5734 2.687425 GTTAGAGGAGGACCGTAGTTCC 59.313 54.545 0.00 0.00 41.83 3.62
2411 5770 0.995024 ACCACTTAAGAGCCAGCCAT 59.005 50.000 10.09 0.00 0.00 4.40
2415 5774 2.877168 CACTTAAGAGCCAGCCATGATC 59.123 50.000 10.09 0.00 0.00 2.92
2430 5789 4.634883 GCCATGATCTAATACAGCTCCATG 59.365 45.833 0.00 0.00 0.00 3.66
2448 5807 3.962718 CCATGGGAGTTTAGCCAAATGAT 59.037 43.478 2.85 0.00 0.00 2.45
2452 5811 5.437060 TGGGAGTTTAGCCAAATGATAGTC 58.563 41.667 0.00 0.00 0.00 2.59
2453 5812 4.511826 GGGAGTTTAGCCAAATGATAGTCG 59.488 45.833 0.00 0.00 0.00 4.18
2454 5813 5.357257 GGAGTTTAGCCAAATGATAGTCGA 58.643 41.667 0.00 0.00 0.00 4.20
2455 5814 5.815740 GGAGTTTAGCCAAATGATAGTCGAA 59.184 40.000 0.00 0.00 0.00 3.71
2456 5815 6.018669 GGAGTTTAGCCAAATGATAGTCGAAG 60.019 42.308 0.00 0.00 0.00 3.79
2457 5816 6.640518 AGTTTAGCCAAATGATAGTCGAAGA 58.359 36.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 2.060383 TCTGGACAGGGCAGGATCG 61.060 63.158 0.00 0.00 0.00 3.69
867 871 3.175710 AGGGTTGTGCCGGTTCCT 61.176 61.111 1.90 0.00 38.44 3.36
986 990 2.434843 CCCATCAGCGCCTCTACCA 61.435 63.158 2.29 0.00 0.00 3.25
1052 1056 1.595382 GTCACGTTCACCAGCAGCT 60.595 57.895 0.00 0.00 0.00 4.24
1290 1317 4.628715 GCTTGATTAATCCAAGTGGGGAGA 60.629 45.833 12.90 0.00 42.11 3.71
1299 1336 9.859427 CAACAGAATTAAGCTTGATTAATCCAA 57.141 29.630 15.72 6.58 34.93 3.53
1391 1428 1.658686 GATCTGAGCGTCGACCTGGT 61.659 60.000 10.58 0.00 0.00 4.00
1405 1442 3.979948 AAGCAGACGATGATCTGATCTG 58.020 45.455 17.82 8.91 44.42 2.90
1419 1456 1.658095 GTGATGAGCGAAGAAGCAGAC 59.342 52.381 0.00 0.00 40.15 3.51
1442 1479 3.840078 TCCCTTCAGACATCAAGACATGA 59.160 43.478 0.00 0.00 43.67 3.07
1479 1516 6.132791 TGCCAACTCGTTTTACAATTTACA 57.867 33.333 0.00 0.00 0.00 2.41
1480 1517 6.639279 ACATGCCAACTCGTTTTACAATTTAC 59.361 34.615 0.00 0.00 0.00 2.01
1481 1518 6.740110 ACATGCCAACTCGTTTTACAATTTA 58.260 32.000 0.00 0.00 0.00 1.40
1482 1519 5.596845 ACATGCCAACTCGTTTTACAATTT 58.403 33.333 0.00 0.00 0.00 1.82
1483 1520 5.195001 ACATGCCAACTCGTTTTACAATT 57.805 34.783 0.00 0.00 0.00 2.32
1484 1521 4.612712 CGACATGCCAACTCGTTTTACAAT 60.613 41.667 0.00 0.00 0.00 2.71
1485 1522 3.303461 CGACATGCCAACTCGTTTTACAA 60.303 43.478 0.00 0.00 0.00 2.41
1550 1591 4.446371 GAGGATCTGACAAACCGATCAAT 58.554 43.478 5.17 0.00 39.76 2.57
1594 1635 5.066505 CCGAACTGTACGTACCTAAGGTAAT 59.933 44.000 22.43 2.92 40.12 1.89
1722 4434 1.689273 CCCTCATGGCTCTAGGTACAC 59.311 57.143 0.00 0.00 0.00 2.90
1756 4468 1.771073 TTTCAGTTGCGTGTGCCTCG 61.771 55.000 0.00 0.00 41.78 4.63
1775 4770 7.337689 ACATAATCAACAGCACAGATTACACAT 59.662 33.333 0.00 0.00 37.14 3.21
1922 4924 1.895238 GCATCAACTGCCCAGCAAT 59.105 52.632 0.00 0.00 45.66 3.56
1934 4936 7.765695 AACAAGGAATTCTTTCTAGCATCAA 57.234 32.000 5.23 0.00 32.41 2.57
1958 4960 9.896263 GGGAAACGAAATTTAATACAGTGTTAA 57.104 29.630 0.00 0.00 0.00 2.01
1959 4961 9.287373 AGGGAAACGAAATTTAATACAGTGTTA 57.713 29.630 0.00 0.00 0.00 2.41
1971 4973 6.452242 GGTGTCAAATAGGGAAACGAAATTT 58.548 36.000 0.00 0.00 0.00 1.82
1975 4977 3.068560 CGGTGTCAAATAGGGAAACGAA 58.931 45.455 0.00 0.00 0.00 3.85
1977 4979 1.735571 CCGGTGTCAAATAGGGAAACG 59.264 52.381 0.00 0.00 0.00 3.60
1979 4981 4.310022 AATCCGGTGTCAAATAGGGAAA 57.690 40.909 0.00 0.00 0.00 3.13
2018 5274 6.534634 AGGCATGAAACTTAGACTTAGTGTT 58.465 36.000 0.00 0.00 0.00 3.32
2025 5281 9.515226 TGTTATAAAAGGCATGAAACTTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
2026 5282 9.556030 GTGTTATAAAAGGCATGAAACTTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
2027 5283 9.515226 AGTGTTATAAAAGGCATGAAACTTAGA 57.485 29.630 0.00 0.00 0.00 2.10
2031 5287 8.299570 CAGAAGTGTTATAAAAGGCATGAAACT 58.700 33.333 0.00 0.00 0.00 2.66
2032 5288 8.082242 ACAGAAGTGTTATAAAAGGCATGAAAC 58.918 33.333 0.00 0.00 30.30 2.78
2033 5289 8.177119 ACAGAAGTGTTATAAAAGGCATGAAA 57.823 30.769 0.00 0.00 30.30 2.69
2035 5291 6.374333 GGACAGAAGTGTTATAAAAGGCATGA 59.626 38.462 0.00 0.00 36.88 3.07
2036 5292 6.150976 TGGACAGAAGTGTTATAAAAGGCATG 59.849 38.462 0.00 0.00 36.88 4.06
2037 5293 6.245408 TGGACAGAAGTGTTATAAAAGGCAT 58.755 36.000 0.00 0.00 36.88 4.40
2038 5294 5.626142 TGGACAGAAGTGTTATAAAAGGCA 58.374 37.500 0.00 0.00 36.88 4.75
2039 5295 6.759497 ATGGACAGAAGTGTTATAAAAGGC 57.241 37.500 0.00 0.00 36.88 4.35
2040 5296 9.981114 AAAAATGGACAGAAGTGTTATAAAAGG 57.019 29.630 0.00 0.00 36.88 3.11
2074 5422 6.644592 GGCTTTTTACATGCAAGTTAACATCA 59.355 34.615 8.61 2.79 0.00 3.07
2075 5423 6.644592 TGGCTTTTTACATGCAAGTTAACATC 59.355 34.615 8.61 0.00 0.00 3.06
2078 5426 5.983118 AGTGGCTTTTTACATGCAAGTTAAC 59.017 36.000 0.00 0.00 0.00 2.01
2080 5428 5.782893 AGTGGCTTTTTACATGCAAGTTA 57.217 34.783 0.00 0.00 0.00 2.24
2081 5429 4.670896 AGTGGCTTTTTACATGCAAGTT 57.329 36.364 0.00 0.00 0.00 2.66
2082 5430 4.670896 AAGTGGCTTTTTACATGCAAGT 57.329 36.364 0.00 0.00 0.00 3.16
2083 5431 5.740406 CAAAAGTGGCTTTTTACATGCAAG 58.260 37.500 4.33 0.00 41.05 4.01
2084 5432 4.034975 GCAAAAGTGGCTTTTTACATGCAA 59.965 37.500 4.33 0.00 41.05 4.08
2085 5433 3.559242 GCAAAAGTGGCTTTTTACATGCA 59.441 39.130 4.33 0.00 41.05 3.96
2087 5435 4.730600 GGCAAAAGTGGCTTTTTACATG 57.269 40.909 4.33 0.00 46.62 3.21
2089 5437 3.198853 AAGGGCAAAAGTGGCTTTTTACA 59.801 39.130 4.33 0.00 45.84 2.41
2098 5446 4.806640 ATTACATGAAGGGCAAAAGTGG 57.193 40.909 0.00 0.00 0.00 4.00
2100 5448 7.363793 GGTTCATATTACATGAAGGGCAAAAGT 60.364 37.037 0.00 0.00 38.54 2.66
2102 5450 6.127196 GGGTTCATATTACATGAAGGGCAAAA 60.127 38.462 0.00 0.00 38.54 2.44
2103 5451 5.362430 GGGTTCATATTACATGAAGGGCAAA 59.638 40.000 0.00 0.00 38.54 3.68
2104 5452 4.892934 GGGTTCATATTACATGAAGGGCAA 59.107 41.667 0.00 0.00 38.54 4.52
2105 5453 4.469657 GGGTTCATATTACATGAAGGGCA 58.530 43.478 0.00 0.00 38.54 5.36
2106 5454 3.502211 CGGGTTCATATTACATGAAGGGC 59.498 47.826 0.00 0.00 38.54 5.19
2107 5455 3.502211 GCGGGTTCATATTACATGAAGGG 59.498 47.826 0.00 0.00 38.54 3.95
2108 5456 3.502211 GGCGGGTTCATATTACATGAAGG 59.498 47.826 0.00 0.00 38.54 3.46
2109 5457 4.133820 TGGCGGGTTCATATTACATGAAG 58.866 43.478 0.00 0.00 38.54 3.02
2110 5458 4.157849 TGGCGGGTTCATATTACATGAA 57.842 40.909 0.00 0.00 35.86 2.57
2111 5459 3.847671 TGGCGGGTTCATATTACATGA 57.152 42.857 0.00 0.00 0.00 3.07
2114 5462 2.224670 GGGATGGCGGGTTCATATTACA 60.225 50.000 0.00 0.00 0.00 2.41
2115 5463 2.433436 GGGATGGCGGGTTCATATTAC 58.567 52.381 0.00 0.00 0.00 1.89
2116 5464 1.002659 CGGGATGGCGGGTTCATATTA 59.997 52.381 0.00 0.00 0.00 0.98
2117 5465 0.250727 CGGGATGGCGGGTTCATATT 60.251 55.000 0.00 0.00 0.00 1.28
2118 5466 1.374947 CGGGATGGCGGGTTCATAT 59.625 57.895 0.00 0.00 0.00 1.78
2119 5467 2.825982 CGGGATGGCGGGTTCATA 59.174 61.111 0.00 0.00 0.00 2.15
2120 5468 4.875713 GCGGGATGGCGGGTTCAT 62.876 66.667 0.00 0.00 0.00 2.57
2127 5475 2.892425 GACTTCTGCGGGATGGCG 60.892 66.667 0.00 0.00 35.06 5.69
2128 5476 2.892425 CGACTTCTGCGGGATGGC 60.892 66.667 0.00 0.00 0.00 4.40
2129 5477 2.892425 GCGACTTCTGCGGGATGG 60.892 66.667 0.00 0.00 0.00 3.51
2130 5478 2.892425 GGCGACTTCTGCGGGATG 60.892 66.667 0.00 0.00 0.00 3.51
2131 5479 3.077556 AGGCGACTTCTGCGGGAT 61.078 61.111 0.00 0.00 37.44 3.85
2141 5489 3.077556 ATCGGGCAGAAGGCGACT 61.078 61.111 0.00 0.00 46.16 4.18
2142 5490 2.586357 GATCGGGCAGAAGGCGAC 60.586 66.667 0.00 0.00 46.16 5.19
2143 5491 3.849951 GGATCGGGCAGAAGGCGA 61.850 66.667 0.00 0.00 46.16 5.54
2144 5492 3.466791 ATGGATCGGGCAGAAGGCG 62.467 63.158 0.00 0.00 46.16 5.52
2145 5493 1.599240 GATGGATCGGGCAGAAGGC 60.599 63.158 0.00 0.00 43.74 4.35
2146 5494 0.034616 GAGATGGATCGGGCAGAAGG 59.965 60.000 0.00 0.00 0.00 3.46
2147 5495 0.034616 GGAGATGGATCGGGCAGAAG 59.965 60.000 0.00 0.00 0.00 2.85
2148 5496 0.690744 TGGAGATGGATCGGGCAGAA 60.691 55.000 0.00 0.00 0.00 3.02
2149 5497 1.075301 TGGAGATGGATCGGGCAGA 60.075 57.895 0.00 0.00 0.00 4.26
2150 5498 1.070445 GTGGAGATGGATCGGGCAG 59.930 63.158 0.00 0.00 0.00 4.85
2151 5499 1.688884 TGTGGAGATGGATCGGGCA 60.689 57.895 0.00 0.00 0.00 5.36
2152 5500 1.070445 CTGTGGAGATGGATCGGGC 59.930 63.158 0.00 0.00 0.00 6.13
2153 5501 1.050988 ACCTGTGGAGATGGATCGGG 61.051 60.000 0.00 0.00 0.00 5.14
2154 5502 0.390860 GACCTGTGGAGATGGATCGG 59.609 60.000 0.00 0.00 0.00 4.18
2155 5503 0.390860 GGACCTGTGGAGATGGATCG 59.609 60.000 0.00 0.00 0.00 3.69
2156 5504 0.761802 GGGACCTGTGGAGATGGATC 59.238 60.000 0.00 0.00 0.00 3.36
2157 5505 0.044702 TGGGACCTGTGGAGATGGAT 59.955 55.000 0.00 0.00 0.00 3.41
2159 5507 0.471617 GATGGGACCTGTGGAGATGG 59.528 60.000 0.00 0.00 0.00 3.51
2160 5508 0.471617 GGATGGGACCTGTGGAGATG 59.528 60.000 0.00 0.00 0.00 2.90
2161 5509 0.344790 AGGATGGGACCTGTGGAGAT 59.655 55.000 0.00 0.00 39.01 2.75
2163 5511 0.326048 AGAGGATGGGACCTGTGGAG 60.326 60.000 0.00 0.00 40.73 3.86
2169 5517 1.022903 AGAAGGAGAGGATGGGACCT 58.977 55.000 0.00 0.00 43.64 3.85
2170 5518 1.419381 GAGAAGGAGAGGATGGGACC 58.581 60.000 0.00 0.00 0.00 4.46
2171 5519 1.419381 GGAGAAGGAGAGGATGGGAC 58.581 60.000 0.00 0.00 0.00 4.46
2172 5520 0.266152 GGGAGAAGGAGAGGATGGGA 59.734 60.000 0.00 0.00 0.00 4.37
2173 5521 0.766288 GGGGAGAAGGAGAGGATGGG 60.766 65.000 0.00 0.00 0.00 4.00
2174 5522 0.030705 TGGGGAGAAGGAGAGGATGG 60.031 60.000 0.00 0.00 0.00 3.51
2175 5523 2.115337 ATGGGGAGAAGGAGAGGATG 57.885 55.000 0.00 0.00 0.00 3.51
2177 5525 1.366082 TGAATGGGGAGAAGGAGAGGA 59.634 52.381 0.00 0.00 0.00 3.71
2178 5526 1.767681 CTGAATGGGGAGAAGGAGAGG 59.232 57.143 0.00 0.00 0.00 3.69
2180 5528 2.948889 TCTGAATGGGGAGAAGGAGA 57.051 50.000 0.00 0.00 0.00 3.71
2181 5529 3.715834 AGAATCTGAATGGGGAGAAGGAG 59.284 47.826 0.00 0.00 0.00 3.69
2183 5531 4.516652 AAGAATCTGAATGGGGAGAAGG 57.483 45.455 0.00 0.00 0.00 3.46
2184 5532 6.210185 ACAAAAAGAATCTGAATGGGGAGAAG 59.790 38.462 0.00 0.00 0.00 2.85
2185 5533 6.015180 CACAAAAAGAATCTGAATGGGGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
2186 5534 5.477984 CACAAAAAGAATCTGAATGGGGAGA 59.522 40.000 0.00 0.00 0.00 3.71
2187 5535 5.477984 TCACAAAAAGAATCTGAATGGGGAG 59.522 40.000 0.00 0.00 0.00 4.30
2188 5536 5.392995 TCACAAAAAGAATCTGAATGGGGA 58.607 37.500 0.00 0.00 0.00 4.81
2189 5537 5.726980 TCACAAAAAGAATCTGAATGGGG 57.273 39.130 0.00 0.00 0.00 4.96
2192 5540 9.338291 CAGTACATCACAAAAAGAATCTGAATG 57.662 33.333 0.00 0.00 0.00 2.67
2195 5543 7.173218 GTCCAGTACATCACAAAAAGAATCTGA 59.827 37.037 0.00 0.00 0.00 3.27
2196 5544 7.173907 AGTCCAGTACATCACAAAAAGAATCTG 59.826 37.037 0.00 0.00 0.00 2.90
2197 5545 7.173907 CAGTCCAGTACATCACAAAAAGAATCT 59.826 37.037 0.00 0.00 0.00 2.40
2198 5546 7.301054 CAGTCCAGTACATCACAAAAAGAATC 58.699 38.462 0.00 0.00 0.00 2.52
2199 5547 6.207417 CCAGTCCAGTACATCACAAAAAGAAT 59.793 38.462 0.00 0.00 0.00 2.40
2200 5548 5.530915 CCAGTCCAGTACATCACAAAAAGAA 59.469 40.000 0.00 0.00 0.00 2.52
2201 5549 5.063204 CCAGTCCAGTACATCACAAAAAGA 58.937 41.667 0.00 0.00 0.00 2.52
2203 5551 4.787551 ACCAGTCCAGTACATCACAAAAA 58.212 39.130 0.00 0.00 0.00 1.94
2205 5553 4.431416 AACCAGTCCAGTACATCACAAA 57.569 40.909 0.00 0.00 0.00 2.83
2206 5554 4.431416 AAACCAGTCCAGTACATCACAA 57.569 40.909 0.00 0.00 0.00 3.33
2207 5555 4.431416 AAAACCAGTCCAGTACATCACA 57.569 40.909 0.00 0.00 0.00 3.58
2208 5556 7.448748 AATAAAAACCAGTCCAGTACATCAC 57.551 36.000 0.00 0.00 0.00 3.06
2209 5557 9.173021 CATAATAAAAACCAGTCCAGTACATCA 57.827 33.333 0.00 0.00 0.00 3.07
2210 5558 9.174166 ACATAATAAAAACCAGTCCAGTACATC 57.826 33.333 0.00 0.00 0.00 3.06
2217 5565 9.581289 CCCATATACATAATAAAAACCAGTCCA 57.419 33.333 0.00 0.00 0.00 4.02
2218 5566 9.802039 TCCCATATACATAATAAAAACCAGTCC 57.198 33.333 0.00 0.00 0.00 3.85
2239 5598 8.603898 TGGACGAGTAATATGTATATTCCCAT 57.396 34.615 0.63 0.00 34.91 4.00
2240 5599 8.425237 TTGGACGAGTAATATGTATATTCCCA 57.575 34.615 0.63 0.00 34.91 4.37
2268 5627 8.357402 GTTGTGGACCACTAGAAACAAATTTAT 58.643 33.333 24.81 0.00 35.11 1.40
2286 5645 1.981256 ATGTCTTGGGTGTTGTGGAC 58.019 50.000 0.00 0.00 0.00 4.02
2315 5674 1.503542 GCGCATGTTCAGGTTCAGG 59.496 57.895 0.30 0.00 0.00 3.86
2317 5676 0.955428 GAGGCGCATGTTCAGGTTCA 60.955 55.000 10.83 0.00 0.00 3.18
2323 5682 0.321346 TCAGAAGAGGCGCATGTTCA 59.679 50.000 29.64 10.90 0.00 3.18
2331 5690 0.455410 CTCTCTGGTCAGAAGAGGCG 59.545 60.000 14.20 0.00 41.33 5.52
2342 5701 2.243736 CTCCTCTAACTCCCTCTCTGGT 59.756 54.545 0.00 0.00 0.00 4.00
2375 5734 1.705186 TGGTCCCCTTCTTCCTTCTTG 59.295 52.381 0.00 0.00 0.00 3.02
2394 5753 2.408271 TCATGGCTGGCTCTTAAGTG 57.592 50.000 1.63 0.77 0.00 3.16
2396 5755 3.488778 AGATCATGGCTGGCTCTTAAG 57.511 47.619 2.00 0.00 0.00 1.85
2401 5760 4.252073 CTGTATTAGATCATGGCTGGCTC 58.748 47.826 2.00 0.00 0.00 4.70
2411 5770 4.492646 TCCCATGGAGCTGTATTAGATCA 58.507 43.478 15.22 0.00 43.62 2.92
2430 5789 4.511826 CGACTATCATTTGGCTAAACTCCC 59.488 45.833 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.