Multiple sequence alignment - TraesCS4A01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G371400 chr4A 100.000 4345 0 0 1072 5416 645404847 645400503 0.000000e+00 8024
1 TraesCS4A01G371400 chr4A 93.837 2742 112 38 2689 5414 645117825 645115125 0.000000e+00 4074
2 TraesCS4A01G371400 chr4A 100.000 1024 0 0 1 1024 645405918 645404895 0.000000e+00 1892
3 TraesCS4A01G371400 chr4A 92.045 440 33 2 2689 3126 645160277 645159838 7.710000e-173 617
4 TraesCS4A01G371400 chr4A 79.630 918 123 30 3587 4467 644283071 644282181 7.760000e-168 601
5 TraesCS4A01G371400 chr4A 88.347 472 33 6 3791 4262 644643807 644643358 1.030000e-151 547
6 TraesCS4A01G371400 chr4A 90.513 390 35 1 3116 3505 645158868 645158481 1.040000e-141 514
7 TraesCS4A01G371400 chr4A 83.540 565 63 19 3959 4505 644684590 644684038 8.100000e-138 501
8 TraesCS4A01G371400 chr4A 84.375 480 63 10 4031 4505 645072454 645071982 1.370000e-125 460
9 TraesCS4A01G371400 chr4A 82.214 551 74 12 2956 3498 644442021 644441487 2.300000e-123 453
10 TraesCS4A01G371400 chr4A 86.788 386 46 3 4024 4405 644688556 644688172 5.010000e-115 425
11 TraesCS4A01G371400 chr4A 86.788 386 46 3 4024 4405 644736990 644736606 5.010000e-115 425
12 TraesCS4A01G371400 chr4A 97.041 169 4 1 2333 2501 732790024 732790191 3.190000e-72 283
13 TraesCS4A01G371400 chr4A 81.707 328 45 8 5066 5379 645107964 645107638 5.380000e-65 259
14 TraesCS4A01G371400 chr4A 79.088 373 38 14 5065 5412 644661568 644661211 2.540000e-53 220
15 TraesCS4A01G371400 chr4A 79.088 373 38 14 5065 5412 644712171 644711814 2.540000e-53 220
16 TraesCS4A01G371400 chr4A 87.059 170 21 1 5070 5239 644462004 644461836 1.990000e-44 191
17 TraesCS4A01G371400 chr4A 86.331 139 18 1 5101 5239 645291602 645291465 3.380000e-32 150
18 TraesCS4A01G371400 chr4A 85.950 121 10 1 5299 5412 645071068 645070948 7.370000e-24 122
19 TraesCS4A01G371400 chr7D 90.698 2021 137 27 2497 4505 39509750 39507769 0.000000e+00 2643
20 TraesCS4A01G371400 chr7D 89.198 1222 70 28 1073 2266 39510968 39509781 0.000000e+00 1469
21 TraesCS4A01G371400 chr7D 91.048 849 43 9 3959 4792 39501496 39500666 0.000000e+00 1116
22 TraesCS4A01G371400 chr7D 80.699 601 61 26 4846 5414 39500662 39500085 3.020000e-112 416
23 TraesCS4A01G371400 chr7D 87.660 235 28 1 5065 5299 39499091 39498858 6.910000e-69 272
24 TraesCS4A01G371400 chr7D 86.383 235 31 1 5065 5299 39256659 39256426 6.960000e-64 255
25 TraesCS4A01G371400 chr7D 85.784 204 28 1 4054 4256 39256020 39255817 1.180000e-51 215
26 TraesCS4A01G371400 chr7D 91.447 152 1 7 836 985 39511540 39511399 1.190000e-46 198
27 TraesCS4A01G371400 chr7D 80.791 177 27 5 5065 5238 39504610 39504438 1.220000e-26 132
28 TraesCS4A01G371400 chr7D 93.103 87 6 0 3695 3781 39253406 39253320 1.580000e-25 128
29 TraesCS4A01G371400 chr7D 94.118 68 4 0 2269 2336 39509814 39509747 2.670000e-18 104
30 TraesCS4A01G371400 chr2B 99.043 836 8 0 1 836 652843364 652842529 0.000000e+00 1500
31 TraesCS4A01G371400 chr2B 86.036 666 66 15 1197 1861 384313833 384314472 0.000000e+00 689
32 TraesCS4A01G371400 chr5B 98.684 836 10 1 1 835 56911567 56912402 0.000000e+00 1482
33 TraesCS4A01G371400 chr5B 84.985 666 74 11 1197 1861 121406148 121406788 0.000000e+00 652
34 TraesCS4A01G371400 chr4B 98.451 839 13 0 1 839 139749314 139750152 0.000000e+00 1478
35 TraesCS4A01G371400 chrUn 98.563 835 12 0 1 835 309590143 309589309 0.000000e+00 1476
36 TraesCS4A01G371400 chrUn 98.563 835 12 0 1 835 361598205 361599039 0.000000e+00 1476
37 TraesCS4A01G371400 chr1A 98.563 835 12 0 1 835 63756502 63755668 0.000000e+00 1476
38 TraesCS4A01G371400 chr3A 98.561 834 12 0 1 834 506475897 506475064 0.000000e+00 1474
39 TraesCS4A01G371400 chr3A 83.748 683 70 17 1188 1861 609182217 609181567 4.640000e-170 608
40 TraesCS4A01G371400 chr7B 97.880 849 16 2 1 849 504196328 504195482 0.000000e+00 1467
41 TraesCS4A01G371400 chr2A 98.323 835 14 0 1 835 672543264 672544098 0.000000e+00 1465
42 TraesCS4A01G371400 chr2A 83.828 674 71 15 1188 1861 686362461 686363096 1.670000e-169 606
43 TraesCS4A01G371400 chr5A 81.491 389 46 10 1201 1589 379847960 379848322 4.100000e-76 296
44 TraesCS4A01G371400 chr5A 92.857 154 11 0 1708 1861 379855629 379855782 1.960000e-54 224
45 TraesCS4A01G371400 chr7A 97.605 167 3 1 2335 2501 320981337 320981172 8.880000e-73 285
46 TraesCS4A01G371400 chr2D 97.605 167 3 1 2335 2501 426427965 426427800 8.880000e-73 285
47 TraesCS4A01G371400 chr2D 97.041 169 4 1 2332 2500 161907019 161906852 3.190000e-72 283
48 TraesCS4A01G371400 chr6A 96.491 171 5 1 2330 2500 153669707 153669876 1.150000e-71 281
49 TraesCS4A01G371400 chr3B 94.565 184 7 3 2317 2500 120616897 120617077 1.150000e-71 281
50 TraesCS4A01G371400 chr6B 95.954 173 6 1 2328 2500 473219224 473219053 4.130000e-71 279
51 TraesCS4A01G371400 chr1D 94.118 187 6 5 2333 2518 360358389 360358207 4.130000e-71 279
52 TraesCS4A01G371400 chr1D 94.944 178 7 2 2331 2507 39871810 39871986 1.490000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G371400 chr4A 645400503 645405918 5415 True 4958.00 8024 100.000000 1 5416 2 chr4A.!!$R14 5415
1 TraesCS4A01G371400 chr4A 645115125 645117825 2700 True 4074.00 4074 93.837000 2689 5414 1 chr4A.!!$R9 2725
2 TraesCS4A01G371400 chr4A 644282181 644283071 890 True 601.00 601 79.630000 3587 4467 1 chr4A.!!$R1 880
3 TraesCS4A01G371400 chr4A 645158481 645160277 1796 True 565.50 617 91.279000 2689 3505 2 chr4A.!!$R13 816
4 TraesCS4A01G371400 chr4A 644684038 644688556 4518 True 463.00 501 85.164000 3959 4505 2 chr4A.!!$R11 546
5 TraesCS4A01G371400 chr4A 644441487 644442021 534 True 453.00 453 82.214000 2956 3498 1 chr4A.!!$R2 542
6 TraesCS4A01G371400 chr4A 645070948 645072454 1506 True 291.00 460 85.162500 4031 5412 2 chr4A.!!$R12 1381
7 TraesCS4A01G371400 chr7D 39498858 39511540 12682 True 793.75 2643 88.207375 836 5414 8 chr7D.!!$R2 4578
8 TraesCS4A01G371400 chr2B 652842529 652843364 835 True 1500.00 1500 99.043000 1 836 1 chr2B.!!$R1 835
9 TraesCS4A01G371400 chr2B 384313833 384314472 639 False 689.00 689 86.036000 1197 1861 1 chr2B.!!$F1 664
10 TraesCS4A01G371400 chr5B 56911567 56912402 835 False 1482.00 1482 98.684000 1 835 1 chr5B.!!$F1 834
11 TraesCS4A01G371400 chr5B 121406148 121406788 640 False 652.00 652 84.985000 1197 1861 1 chr5B.!!$F2 664
12 TraesCS4A01G371400 chr4B 139749314 139750152 838 False 1478.00 1478 98.451000 1 839 1 chr4B.!!$F1 838
13 TraesCS4A01G371400 chrUn 309589309 309590143 834 True 1476.00 1476 98.563000 1 835 1 chrUn.!!$R1 834
14 TraesCS4A01G371400 chrUn 361598205 361599039 834 False 1476.00 1476 98.563000 1 835 1 chrUn.!!$F1 834
15 TraesCS4A01G371400 chr1A 63755668 63756502 834 True 1476.00 1476 98.563000 1 835 1 chr1A.!!$R1 834
16 TraesCS4A01G371400 chr3A 506475064 506475897 833 True 1474.00 1474 98.561000 1 834 1 chr3A.!!$R1 833
17 TraesCS4A01G371400 chr3A 609181567 609182217 650 True 608.00 608 83.748000 1188 1861 1 chr3A.!!$R2 673
18 TraesCS4A01G371400 chr7B 504195482 504196328 846 True 1467.00 1467 97.880000 1 849 1 chr7B.!!$R1 848
19 TraesCS4A01G371400 chr2A 672543264 672544098 834 False 1465.00 1465 98.323000 1 835 1 chr2A.!!$F1 834
20 TraesCS4A01G371400 chr2A 686362461 686363096 635 False 606.00 606 83.828000 1188 1861 1 chr2A.!!$F2 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 813 2.109774 CTGCTTCCAATGCCCCAATTA 58.890 47.619 0.00 0.0 0.00 1.40 F
2045 2418 0.379669 CAATCGCTGTGAGGAATGGC 59.620 55.000 0.00 0.0 0.00 4.40 F
2248 2627 0.106268 TGGCCCACTGTTGTGAATGT 60.106 50.000 0.00 0.0 46.55 2.71 F
3598 4968 0.034089 GTAGTGCTGGGAGCCCAAAT 60.034 55.000 9.94 0.0 46.63 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2420 0.107945 CTCAGCCCTGCCTTGACTAC 60.108 60.000 0.00 0.0 0.00 2.73 R
2889 3269 0.179034 GCCGAGGATCTTTGAGCCAT 60.179 55.000 4.65 0.0 41.08 4.40 R
3634 5004 1.890573 GCAATGTCCCTAAAGGCACCA 60.891 52.381 0.00 0.0 34.51 4.17 R
4814 17097 0.250467 AACAGAGGCGACAACAGCAT 60.250 50.000 0.00 0.0 36.08 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
811 813 2.109774 CTGCTTCCAATGCCCCAATTA 58.890 47.619 0.00 0.00 0.00 1.40
820 822 4.202243 CCAATGCCCCAATTATGGTACTTG 60.202 45.833 0.00 0.00 46.01 3.16
979 981 2.592287 GGAAAACGCCGTGACCCA 60.592 61.111 0.00 0.00 0.00 4.51
980 982 2.635338 GAAAACGCCGTGACCCAC 59.365 61.111 0.00 0.00 0.00 4.61
992 1008 3.699134 GACCCACCCCCAGATTCGC 62.699 68.421 0.00 0.00 0.00 4.70
1100 1448 4.431131 CCTTCCCCATGCTGCCGT 62.431 66.667 0.00 0.00 0.00 5.68
1287 1635 3.141488 CGTCCTCCTCTCCCACGG 61.141 72.222 0.00 0.00 0.00 4.94
1549 1900 4.117661 GCCGAGGTCGACGAGCTT 62.118 66.667 28.38 13.84 40.67 3.74
1589 1940 3.869272 GATTCGCACGGCTGGCTG 61.869 66.667 0.00 0.00 0.00 4.85
1590 1941 4.393155 ATTCGCACGGCTGGCTGA 62.393 61.111 8.50 0.00 0.00 4.26
1605 1956 4.774124 CTGGCTGACTTATTCCATTCTGA 58.226 43.478 0.00 0.00 0.00 3.27
1612 1963 4.918588 ACTTATTCCATTCTGAAACGGGT 58.081 39.130 8.78 2.84 0.00 5.28
1667 2027 5.330295 TCGAACTGCGACTAGATTAGTTTC 58.670 41.667 0.00 0.00 45.59 2.78
1674 2034 5.048507 GCGACTAGATTAGTTTCGGGAAAT 58.951 41.667 0.00 0.00 39.59 2.17
1683 2049 9.159364 AGATTAGTTTCGGGAAATAAACAGTAC 57.841 33.333 0.00 0.00 37.92 2.73
1684 2050 9.159364 GATTAGTTTCGGGAAATAAACAGTACT 57.841 33.333 0.00 0.00 37.92 2.73
1685 2051 6.796705 AGTTTCGGGAAATAAACAGTACTG 57.203 37.500 21.44 21.44 37.92 2.74
1686 2052 6.293698 AGTTTCGGGAAATAAACAGTACTGT 58.706 36.000 22.95 22.95 37.92 3.55
1687 2053 6.769341 AGTTTCGGGAAATAAACAGTACTGTT 59.231 34.615 31.07 31.07 42.63 3.16
1700 2066 5.967088 ACAGTACTGTTCGAGCTAATCAAT 58.033 37.500 22.95 0.00 41.83 2.57
1726 2092 2.780065 GGGAAACCGTTAACCAACAC 57.220 50.000 0.00 0.00 43.64 3.32
1739 2105 6.238814 CGTTAACCAACACCTTTAGGAAATGT 60.239 38.462 2.06 0.00 38.94 2.71
1740 2106 7.494211 GTTAACCAACACCTTTAGGAAATGTT 58.506 34.615 2.06 0.31 38.94 2.71
1746 2112 4.023193 ACACCTTTAGGAAATGTTGCTTCG 60.023 41.667 2.06 0.00 38.94 3.79
1756 2122 6.071391 AGGAAATGTTGCTTCGGTAATCAAAT 60.071 34.615 0.00 0.00 0.00 2.32
1821 2187 5.357878 TCAGGTTACAATTTGCAGATGATCC 59.642 40.000 0.00 0.00 0.00 3.36
1823 2189 5.126061 AGGTTACAATTTGCAGATGATCCAC 59.874 40.000 0.00 0.00 0.00 4.02
1861 2227 4.202050 GGCTGGACATTTTAGTGCCATAAG 60.202 45.833 0.00 0.00 38.79 1.73
1862 2228 4.202050 GCTGGACATTTTAGTGCCATAAGG 60.202 45.833 0.00 0.00 38.23 2.69
1866 2232 5.193099 ACATTTTAGTGCCATAAGGGAGT 57.807 39.130 0.00 0.00 42.24 3.85
1867 2233 5.193679 ACATTTTAGTGCCATAAGGGAGTC 58.806 41.667 0.00 0.00 39.86 3.36
1868 2234 4.919774 TTTTAGTGCCATAAGGGAGTCA 57.080 40.909 0.00 0.00 39.86 3.41
1869 2235 5.450818 TTTTAGTGCCATAAGGGAGTCAT 57.549 39.130 0.00 0.00 39.86 3.06
1870 2236 4.422073 TTAGTGCCATAAGGGAGTCATG 57.578 45.455 0.00 0.00 39.86 3.07
1871 2237 2.481441 AGTGCCATAAGGGAGTCATGA 58.519 47.619 0.00 0.00 40.01 3.07
1873 2239 3.461085 AGTGCCATAAGGGAGTCATGAAT 59.539 43.478 0.00 0.00 40.01 2.57
1874 2240 3.817647 GTGCCATAAGGGAGTCATGAATC 59.182 47.826 14.70 14.70 40.01 2.52
1877 2243 4.759183 GCCATAAGGGAGTCATGAATCTTC 59.241 45.833 21.40 14.17 40.01 2.87
1878 2244 5.688500 GCCATAAGGGAGTCATGAATCTTCA 60.689 44.000 21.40 6.46 39.52 3.02
1879 2245 6.359804 CCATAAGGGAGTCATGAATCTTCAA 58.640 40.000 21.40 7.10 38.92 2.69
1880 2246 7.002879 CCATAAGGGAGTCATGAATCTTCAAT 58.997 38.462 21.40 8.90 38.92 2.57
1885 2253 6.094603 AGGGAGTCATGAATCTTCAATTTTCG 59.905 38.462 21.40 0.00 41.13 3.46
1886 2254 6.261118 GGAGTCATGAATCTTCAATTTTCGG 58.739 40.000 21.40 0.00 41.13 4.30
1895 2263 9.265135 TGAATCTTCAATTTTCGGTGCCGATAG 62.265 40.741 14.42 3.56 40.23 2.08
1909 2277 3.630312 TGCCGATAGCCTTAAATTTGGAC 59.370 43.478 0.00 0.00 42.71 4.02
1913 2281 4.261197 CGATAGCCTTAAATTTGGACCAGC 60.261 45.833 0.00 0.00 0.00 4.85
1970 2338 1.303888 AACTAGGGACGGTCTGCGA 60.304 57.895 8.23 0.00 0.00 5.10
1971 2339 1.593296 AACTAGGGACGGTCTGCGAC 61.593 60.000 8.23 0.79 0.00 5.19
1983 2356 2.668212 TGCGACCGGAAAAGCAGG 60.668 61.111 9.46 0.00 37.91 4.85
2031 2404 1.683943 ATCAACTGATGGGGCAATCG 58.316 50.000 0.00 0.00 32.68 3.34
2045 2418 0.379669 CAATCGCTGTGAGGAATGGC 59.620 55.000 0.00 0.00 0.00 4.40
2046 2419 0.254178 AATCGCTGTGAGGAATGGCT 59.746 50.000 0.00 0.00 0.00 4.75
2047 2420 0.463295 ATCGCTGTGAGGAATGGCTG 60.463 55.000 0.00 0.00 0.00 4.85
2089 2467 1.107114 TTTTCGCCTGTTTGCTTGGA 58.893 45.000 0.00 0.00 0.00 3.53
2131 2509 3.688673 CAGATGGCTCTTTTCTCAGTTCC 59.311 47.826 0.00 0.00 0.00 3.62
2133 2511 1.416401 TGGCTCTTTTCTCAGTTCCGT 59.584 47.619 0.00 0.00 0.00 4.69
2160 2539 3.258372 CACTTCAGTGCAGTAGTAGGGAA 59.742 47.826 0.00 0.00 39.39 3.97
2162 2541 4.160626 ACTTCAGTGCAGTAGTAGGGAATC 59.839 45.833 0.00 0.00 0.00 2.52
2187 2566 5.996644 TGACTCTTACAGGAGTTTTGGAAA 58.003 37.500 0.00 0.00 45.32 3.13
2197 2576 3.554960 GGAGTTTTGGAAATTCAGGTGCC 60.555 47.826 0.00 0.00 0.00 5.01
2224 2603 5.964758 ACTGAAAATTGCAACTGAAGAACA 58.035 33.333 0.00 0.00 0.00 3.18
2238 2617 1.843368 AGAACATCATTGGCCCACTG 58.157 50.000 0.00 0.00 0.00 3.66
2239 2618 1.076024 AGAACATCATTGGCCCACTGT 59.924 47.619 0.00 0.00 0.00 3.55
2240 2619 1.895131 GAACATCATTGGCCCACTGTT 59.105 47.619 0.00 2.97 0.00 3.16
2241 2620 1.259609 ACATCATTGGCCCACTGTTG 58.740 50.000 9.82 9.82 0.00 3.33
2242 2621 1.259609 CATCATTGGCCCACTGTTGT 58.740 50.000 0.00 0.00 0.00 3.32
2243 2622 1.067425 CATCATTGGCCCACTGTTGTG 60.067 52.381 0.00 0.00 43.45 3.33
2244 2623 0.184692 TCATTGGCCCACTGTTGTGA 59.815 50.000 0.00 0.00 46.55 3.58
2245 2624 1.039068 CATTGGCCCACTGTTGTGAA 58.961 50.000 0.00 0.00 46.55 3.18
2246 2625 1.619827 CATTGGCCCACTGTTGTGAAT 59.380 47.619 0.00 0.00 46.55 2.57
2247 2626 1.039068 TTGGCCCACTGTTGTGAATG 58.961 50.000 0.00 0.00 46.55 2.67
2248 2627 0.106268 TGGCCCACTGTTGTGAATGT 60.106 50.000 0.00 0.00 46.55 2.71
2249 2628 1.039856 GGCCCACTGTTGTGAATGTT 58.960 50.000 0.00 0.00 46.55 2.71
2250 2629 1.412343 GGCCCACTGTTGTGAATGTTT 59.588 47.619 0.00 0.00 46.55 2.83
2251 2630 2.158971 GGCCCACTGTTGTGAATGTTTT 60.159 45.455 0.00 0.00 46.55 2.43
2252 2631 2.865551 GCCCACTGTTGTGAATGTTTTG 59.134 45.455 0.00 0.00 46.55 2.44
2253 2632 3.456280 CCCACTGTTGTGAATGTTTTGG 58.544 45.455 0.00 0.00 46.55 3.28
2254 2633 3.118811 CCCACTGTTGTGAATGTTTTGGT 60.119 43.478 0.00 0.00 46.55 3.67
2255 2634 3.864583 CCACTGTTGTGAATGTTTTGGTG 59.135 43.478 0.00 0.00 46.55 4.17
2256 2635 4.493547 CACTGTTGTGAATGTTTTGGTGT 58.506 39.130 0.00 0.00 46.55 4.16
2257 2636 5.393569 CCACTGTTGTGAATGTTTTGGTGTA 60.394 40.000 0.00 0.00 46.55 2.90
2258 2637 6.096036 CACTGTTGTGAATGTTTTGGTGTAA 58.904 36.000 0.00 0.00 46.55 2.41
2259 2638 6.587990 CACTGTTGTGAATGTTTTGGTGTAAA 59.412 34.615 0.00 0.00 46.55 2.01
2260 2639 6.811170 ACTGTTGTGAATGTTTTGGTGTAAAG 59.189 34.615 0.00 0.00 0.00 1.85
2261 2640 6.692486 TGTTGTGAATGTTTTGGTGTAAAGT 58.308 32.000 0.00 0.00 0.00 2.66
2262 2641 7.827701 TGTTGTGAATGTTTTGGTGTAAAGTA 58.172 30.769 0.00 0.00 0.00 2.24
2263 2642 7.971168 TGTTGTGAATGTTTTGGTGTAAAGTAG 59.029 33.333 0.00 0.00 0.00 2.57
2264 2643 7.033530 TGTGAATGTTTTGGTGTAAAGTAGG 57.966 36.000 0.00 0.00 0.00 3.18
2265 2644 6.829298 TGTGAATGTTTTGGTGTAAAGTAGGA 59.171 34.615 0.00 0.00 0.00 2.94
2266 2645 7.339721 TGTGAATGTTTTGGTGTAAAGTAGGAA 59.660 33.333 0.00 0.00 0.00 3.36
2267 2646 8.357402 GTGAATGTTTTGGTGTAAAGTAGGAAT 58.643 33.333 0.00 0.00 0.00 3.01
2268 2647 8.573035 TGAATGTTTTGGTGTAAAGTAGGAATC 58.427 33.333 0.00 0.00 0.00 2.52
2269 2648 6.887626 TGTTTTGGTGTAAAGTAGGAATCC 57.112 37.500 0.00 0.00 0.00 3.01
2270 2649 5.771165 TGTTTTGGTGTAAAGTAGGAATCCC 59.229 40.000 0.00 0.00 0.00 3.85
2271 2650 5.586155 TTTGGTGTAAAGTAGGAATCCCA 57.414 39.130 0.00 0.00 33.88 4.37
2272 2651 4.563140 TGGTGTAAAGTAGGAATCCCAC 57.437 45.455 0.00 0.00 33.88 4.61
2273 2652 4.172807 TGGTGTAAAGTAGGAATCCCACT 58.827 43.478 0.00 0.00 33.88 4.00
2284 2663 3.157087 GGAATCCCACTGTTGTGAATGT 58.843 45.455 0.00 0.00 46.55 2.71
2288 2667 4.383850 TCCCACTGTTGTGAATGTTTTG 57.616 40.909 0.00 0.00 46.55 2.44
2302 2681 5.888724 TGAATGTTTTGGTGTCAAGTAGGAA 59.111 36.000 0.00 0.00 33.98 3.36
2306 2685 6.358178 TGTTTTGGTGTCAAGTAGGAATGTA 58.642 36.000 0.00 0.00 33.98 2.29
2336 2715 5.419471 ACTGGGAATGTCTAGTCTCAAGTAC 59.581 44.000 0.00 0.00 29.87 2.73
2337 2716 5.580998 TGGGAATGTCTAGTCTCAAGTACT 58.419 41.667 0.00 0.00 26.50 2.73
2338 2717 5.652891 TGGGAATGTCTAGTCTCAAGTACTC 59.347 44.000 0.00 0.00 26.50 2.59
2339 2718 5.068067 GGGAATGTCTAGTCTCAAGTACTCC 59.932 48.000 0.00 0.00 0.00 3.85
2340 2719 5.220892 GGAATGTCTAGTCTCAAGTACTCCG 60.221 48.000 0.00 0.00 0.00 4.63
2343 2722 4.020396 TGTCTAGTCTCAAGTACTCCGTCT 60.020 45.833 0.00 0.00 0.00 4.18
2344 2723 4.330620 GTCTAGTCTCAAGTACTCCGTCTG 59.669 50.000 0.00 0.00 0.00 3.51
2345 2724 3.143211 AGTCTCAAGTACTCCGTCTGT 57.857 47.619 0.00 0.00 0.00 3.41
2346 2725 3.488363 AGTCTCAAGTACTCCGTCTGTT 58.512 45.455 0.00 0.00 0.00 3.16
2347 2726 3.502979 AGTCTCAAGTACTCCGTCTGTTC 59.497 47.826 0.00 0.00 0.00 3.18
2348 2727 2.818432 TCTCAAGTACTCCGTCTGTTCC 59.182 50.000 0.00 0.00 0.00 3.62
2350 2729 4.008330 CTCAAGTACTCCGTCTGTTCCTA 58.992 47.826 0.00 0.00 0.00 2.94
2351 2730 4.401022 TCAAGTACTCCGTCTGTTCCTAA 58.599 43.478 0.00 0.00 0.00 2.69
2352 2731 4.828939 TCAAGTACTCCGTCTGTTCCTAAA 59.171 41.667 0.00 0.00 0.00 1.85
2353 2732 5.479375 TCAAGTACTCCGTCTGTTCCTAAAT 59.521 40.000 0.00 0.00 0.00 1.40
2354 2733 6.660521 TCAAGTACTCCGTCTGTTCCTAAATA 59.339 38.462 0.00 0.00 0.00 1.40
2355 2734 7.341256 TCAAGTACTCCGTCTGTTCCTAAATAT 59.659 37.037 0.00 0.00 0.00 1.28
2356 2735 7.657023 AGTACTCCGTCTGTTCCTAAATATT 57.343 36.000 0.00 0.00 0.00 1.28
2357 2736 8.075761 AGTACTCCGTCTGTTCCTAAATATTT 57.924 34.615 5.89 5.89 0.00 1.40
2358 2737 7.980099 AGTACTCCGTCTGTTCCTAAATATTTG 59.020 37.037 11.05 1.40 0.00 2.32
2359 2738 6.708285 ACTCCGTCTGTTCCTAAATATTTGT 58.292 36.000 11.05 0.00 0.00 2.83
2360 2739 6.817140 ACTCCGTCTGTTCCTAAATATTTGTC 59.183 38.462 11.05 0.00 0.00 3.18
2361 2740 6.942976 TCCGTCTGTTCCTAAATATTTGTCT 58.057 36.000 11.05 0.00 0.00 3.41
2362 2741 7.391620 TCCGTCTGTTCCTAAATATTTGTCTT 58.608 34.615 11.05 0.00 0.00 3.01
2363 2742 7.881232 TCCGTCTGTTCCTAAATATTTGTCTTT 59.119 33.333 11.05 0.00 0.00 2.52
2364 2743 8.175716 CCGTCTGTTCCTAAATATTTGTCTTTC 58.824 37.037 11.05 0.00 0.00 2.62
2365 2744 8.936864 CGTCTGTTCCTAAATATTTGTCTTTCT 58.063 33.333 11.05 0.00 0.00 2.52
2381 2760 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2382 2761 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2383 2762 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2384 2763 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2385 2764 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2386 2765 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2387 2766 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2388 2767 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2389 2768 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2392 2771 9.376075 AGAGATTTCAACAAGTGACTACATATG 57.624 33.333 0.00 0.00 35.39 1.78
2393 2772 8.498054 AGATTTCAACAAGTGACTACATATGG 57.502 34.615 7.80 0.00 35.39 2.74
2394 2773 8.321353 AGATTTCAACAAGTGACTACATATGGA 58.679 33.333 7.80 0.00 35.39 3.41
2395 2774 7.905604 TTTCAACAAGTGACTACATATGGAG 57.094 36.000 13.77 13.77 35.39 3.86
2396 2775 5.419542 TCAACAAGTGACTACATATGGAGC 58.580 41.667 15.30 8.47 0.00 4.70
2397 2776 5.187772 TCAACAAGTGACTACATATGGAGCT 59.812 40.000 15.30 1.21 0.00 4.09
2398 2777 6.379988 TCAACAAGTGACTACATATGGAGCTA 59.620 38.462 15.30 1.10 0.00 3.32
2399 2778 6.791867 ACAAGTGACTACATATGGAGCTAA 57.208 37.500 15.30 0.00 0.00 3.09
2400 2779 7.182817 ACAAGTGACTACATATGGAGCTAAA 57.817 36.000 15.30 0.00 0.00 1.85
2401 2780 7.796054 ACAAGTGACTACATATGGAGCTAAAT 58.204 34.615 15.30 0.00 0.00 1.40
2402 2781 7.712639 ACAAGTGACTACATATGGAGCTAAATG 59.287 37.037 15.30 11.15 0.00 2.32
2403 2782 7.603180 AGTGACTACATATGGAGCTAAATGA 57.397 36.000 15.30 0.00 0.00 2.57
2404 2783 7.665690 AGTGACTACATATGGAGCTAAATGAG 58.334 38.462 15.30 0.00 0.00 2.90
2405 2784 7.288852 AGTGACTACATATGGAGCTAAATGAGT 59.711 37.037 15.30 0.00 0.00 3.41
2406 2785 7.383572 GTGACTACATATGGAGCTAAATGAGTG 59.616 40.741 15.30 0.00 0.00 3.51
2407 2786 7.287696 TGACTACATATGGAGCTAAATGAGTGA 59.712 37.037 15.30 0.00 0.00 3.41
2408 2787 8.023021 ACTACATATGGAGCTAAATGAGTGAA 57.977 34.615 15.30 0.00 0.00 3.18
2409 2788 8.654997 ACTACATATGGAGCTAAATGAGTGAAT 58.345 33.333 15.30 0.00 0.00 2.57
2410 2789 7.976135 ACATATGGAGCTAAATGAGTGAATC 57.024 36.000 7.80 0.00 0.00 2.52
2411 2790 7.743749 ACATATGGAGCTAAATGAGTGAATCT 58.256 34.615 7.80 0.00 0.00 2.40
2412 2791 8.874156 ACATATGGAGCTAAATGAGTGAATCTA 58.126 33.333 7.80 0.00 0.00 1.98
2413 2792 9.149225 CATATGGAGCTAAATGAGTGAATCTAC 57.851 37.037 0.00 0.00 0.00 2.59
2414 2793 6.544928 TGGAGCTAAATGAGTGAATCTACA 57.455 37.500 0.00 0.00 0.00 2.74
2415 2794 6.341316 TGGAGCTAAATGAGTGAATCTACAC 58.659 40.000 0.00 0.00 40.60 2.90
2449 2828 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2451 2830 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2452 2831 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2453 2832 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2454 2833 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
2455 2834 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2456 2835 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2457 2836 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2458 2837 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2459 2838 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2460 2839 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2461 2840 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2462 2841 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2463 2842 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2464 2843 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2465 2844 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2466 2845 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2467 2846 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2468 2847 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2469 2848 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2470 2849 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2471 2850 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2472 2851 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2476 2855 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2477 2856 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2494 2873 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2495 2874 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2496 2875 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2497 2876 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2498 2877 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2499 2878 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2500 2879 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
2501 2880 2.449137 TTAGGAACGGAGGGAGTAGG 57.551 55.000 0.00 0.00 0.00 3.18
2502 2881 1.600058 TAGGAACGGAGGGAGTAGGA 58.400 55.000 0.00 0.00 0.00 2.94
2503 2882 0.708802 AGGAACGGAGGGAGTAGGAA 59.291 55.000 0.00 0.00 0.00 3.36
2504 2883 1.291335 AGGAACGGAGGGAGTAGGAAT 59.709 52.381 0.00 0.00 0.00 3.01
2505 2884 1.687660 GGAACGGAGGGAGTAGGAATC 59.312 57.143 0.00 0.00 0.00 2.52
2506 2885 2.385803 GAACGGAGGGAGTAGGAATCA 58.614 52.381 0.00 0.00 0.00 2.57
2507 2886 2.777459 ACGGAGGGAGTAGGAATCAT 57.223 50.000 0.00 0.00 0.00 2.45
2508 2887 2.320781 ACGGAGGGAGTAGGAATCATG 58.679 52.381 0.00 0.00 0.00 3.07
2509 2888 1.620819 CGGAGGGAGTAGGAATCATGG 59.379 57.143 0.00 0.00 0.00 3.66
2510 2889 2.695585 GGAGGGAGTAGGAATCATGGT 58.304 52.381 0.00 0.00 0.00 3.55
2511 2890 2.635427 GGAGGGAGTAGGAATCATGGTC 59.365 54.545 0.00 0.00 0.00 4.02
2512 2891 3.582164 GAGGGAGTAGGAATCATGGTCT 58.418 50.000 0.00 0.00 0.00 3.85
2513 2892 3.312890 AGGGAGTAGGAATCATGGTCTG 58.687 50.000 0.00 0.00 0.00 3.51
2514 2893 2.370189 GGGAGTAGGAATCATGGTCTGG 59.630 54.545 0.00 0.00 0.00 3.86
2515 2894 3.309296 GGAGTAGGAATCATGGTCTGGA 58.691 50.000 0.00 0.00 0.00 3.86
2598 2977 7.231317 TGAGCTCTAGTAGTCTAGTAGGAGTAC 59.769 44.444 16.19 12.69 42.88 2.73
2676 3055 8.519799 AAACTTTCTCCAGTTCAAATGTCTTA 57.480 30.769 0.00 0.00 35.87 2.10
2677 3056 8.697507 AACTTTCTCCAGTTCAAATGTCTTAT 57.302 30.769 0.00 0.00 30.76 1.73
2763 3143 2.204237 GAGTTTTTGTGCTGGCAAAGG 58.796 47.619 0.00 0.00 39.20 3.11
2781 3161 0.386731 GGTTTGGAAACGATGTGGCG 60.387 55.000 0.00 0.00 39.77 5.69
2789 3169 3.197092 CGATGTGGCGCATGCTGA 61.197 61.111 19.78 0.00 42.25 4.26
2889 3269 1.175983 GGAACGGTCATGGTTGGCAA 61.176 55.000 1.31 0.00 0.00 4.52
2985 3366 8.037758 TGATTTGTTCTTGGTGCTTTCTAAAAA 58.962 29.630 0.00 0.00 0.00 1.94
3046 3427 9.554395 TCATTTGAACATGTAAGTAACTCTTGA 57.446 29.630 0.00 0.00 37.56 3.02
3183 4545 8.841300 GGTAGGATTAATTTCCAGTTGATCTTC 58.159 37.037 0.00 0.00 38.32 2.87
3202 4564 9.102757 TGATCTTCTAAGTCACTGAAATATTGC 57.897 33.333 0.00 0.00 0.00 3.56
3488 4857 7.009179 AGTGGTGGTGATGGATATTATACAG 57.991 40.000 0.00 0.00 0.00 2.74
3598 4968 0.034089 GTAGTGCTGGGAGCCCAAAT 60.034 55.000 9.94 0.00 46.63 2.32
3634 5004 4.095932 TCGTGCTAGTGAATCGTTCAGTAT 59.904 41.667 12.57 2.57 42.82 2.12
4186 16426 1.067071 GGTACGGTAAGCACTGCTCTT 60.067 52.381 3.40 0.00 38.25 2.85
4342 16585 0.679960 TAGGACAGCAGAGCGCAGTA 60.680 55.000 11.47 0.00 41.01 2.74
4380 16627 4.657039 AGTTCCAGTACCTGACCAAAACTA 59.343 41.667 0.00 0.00 32.44 2.24
4386 16650 1.340889 ACCTGACCAAAACTACGCGTA 59.659 47.619 19.40 19.40 0.00 4.42
4405 16669 6.795114 ACGCGTAAAATGAAGTAATGAAGTTG 59.205 34.615 11.67 0.00 0.00 3.16
4474 16749 4.385405 GAGGCGCTGTGAGCAGGT 62.385 66.667 7.64 0.00 42.58 4.00
4550 16825 2.635427 GGTCTCTCAGTTTCTGGACCTT 59.365 50.000 12.81 0.00 37.36 3.50
4679 16962 7.948357 ACACTAAAAATAAGTCCCCTGTTTTC 58.052 34.615 0.00 0.00 0.00 2.29
4682 16965 3.801307 AATAAGTCCCCTGTTTTCGGT 57.199 42.857 0.00 0.00 0.00 4.69
4691 16974 1.208259 CTGTTTTCGGTTTTGCCAGC 58.792 50.000 0.00 0.00 36.97 4.85
4723 17006 7.561237 TGTTTTCTTTTGAACGTTTCTGAAG 57.439 32.000 0.46 5.38 38.30 3.02
4733 17016 1.594862 CGTTTCTGAAGCGGATGATCC 59.405 52.381 17.31 0.08 0.00 3.36
4763 17046 6.588204 TGCAGATATTTTAACCCGTCAGTAT 58.412 36.000 0.00 0.00 0.00 2.12
4776 17059 4.084013 CCCGTCAGTATGTCTTGTTCAAAC 60.084 45.833 0.00 0.00 37.40 2.93
4778 17061 5.924254 CCGTCAGTATGTCTTGTTCAAACTA 59.076 40.000 0.00 0.00 37.40 2.24
4813 17096 9.399403 GTGTTTGGAATAAAGAAATGTCTTCTC 57.601 33.333 0.00 0.00 43.59 2.87
4814 17097 9.130661 TGTTTGGAATAAAGAAATGTCTTCTCA 57.869 29.630 0.00 0.00 43.59 3.27
4821 17151 6.645790 AAAGAAATGTCTTCTCATGCTGTT 57.354 33.333 0.00 0.00 43.59 3.16
4837 17167 0.380378 TGTTGTCGCCTCTGTTTTGC 59.620 50.000 0.00 0.00 0.00 3.68
4863 17194 2.033424 AGCGCCTTTTTCTGTTGACTTC 59.967 45.455 2.29 0.00 0.00 3.01
4864 17195 2.033424 GCGCCTTTTTCTGTTGACTTCT 59.967 45.455 0.00 0.00 0.00 2.85
4883 17214 3.408634 TCTTTTGAAGCCCCTAGTTTCG 58.591 45.455 0.00 0.00 38.46 3.46
4909 17277 6.238211 CCGCACCTAAAAAGATATGTCTTCTG 60.238 42.308 5.07 0.00 43.80 3.02
5020 17515 0.944386 GTTGCTTCGTCTGCTTCCAA 59.056 50.000 0.00 0.00 0.00 3.53
5040 17546 5.183713 TCCAATGTTTGCTGTAAATCCTCTG 59.816 40.000 0.00 0.00 0.00 3.35
5042 17548 6.294675 CCAATGTTTGCTGTAAATCCTCTGAA 60.295 38.462 0.00 0.00 0.00 3.02
5043 17549 5.689383 TGTTTGCTGTAAATCCTCTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
5044 17550 4.518970 TGTTTGCTGTAAATCCTCTGAACC 59.481 41.667 0.00 0.00 0.00 3.62
5045 17551 4.640771 TTGCTGTAAATCCTCTGAACCT 57.359 40.909 0.00 0.00 0.00 3.50
5046 17552 5.755409 TTGCTGTAAATCCTCTGAACCTA 57.245 39.130 0.00 0.00 0.00 3.08
5047 17553 5.957771 TGCTGTAAATCCTCTGAACCTAT 57.042 39.130 0.00 0.00 0.00 2.57
5049 17555 6.817184 TGCTGTAAATCCTCTGAACCTATAC 58.183 40.000 0.00 0.00 0.00 1.47
5050 17556 6.382859 TGCTGTAAATCCTCTGAACCTATACA 59.617 38.462 0.00 0.00 0.00 2.29
5051 17557 7.071196 TGCTGTAAATCCTCTGAACCTATACAT 59.929 37.037 0.00 0.00 0.00 2.29
5053 17559 8.783660 TGTAAATCCTCTGAACCTATACATCT 57.216 34.615 0.00 0.00 0.00 2.90
5055 17561 9.084533 GTAAATCCTCTGAACCTATACATCTCT 57.915 37.037 0.00 0.00 0.00 3.10
5057 17563 8.877864 AATCCTCTGAACCTATACATCTCTAG 57.122 38.462 0.00 0.00 0.00 2.43
5058 17564 6.242396 TCCTCTGAACCTATACATCTCTAGC 58.758 44.000 0.00 0.00 0.00 3.42
5059 17565 5.417580 CCTCTGAACCTATACATCTCTAGCC 59.582 48.000 0.00 0.00 0.00 3.93
5060 17566 5.326069 TCTGAACCTATACATCTCTAGCCC 58.674 45.833 0.00 0.00 0.00 5.19
5062 17568 5.716979 TGAACCTATACATCTCTAGCCCTT 58.283 41.667 0.00 0.00 0.00 3.95
5063 17569 5.540337 TGAACCTATACATCTCTAGCCCTTG 59.460 44.000 0.00 0.00 0.00 3.61
5189 17695 4.076394 TGTTAGTGGGTTTTAGTGGCATC 58.924 43.478 0.00 0.00 0.00 3.91
5241 17747 9.565213 AAGTATAGAACTTGTGTACATTACGTC 57.435 33.333 0.00 0.00 46.90 4.34
5257 17769 2.972625 ACGTCTGTGGTATCATTGGTG 58.027 47.619 0.00 0.00 0.00 4.17
5414 17949 6.452494 TCTCTCGTCTCACCCTTAAATTAG 57.548 41.667 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
782 784 4.282703 GGGCATTGGAAGCAGATTGATATT 59.717 41.667 0.00 0.00 0.00 1.28
786 788 1.477553 GGGCATTGGAAGCAGATTGA 58.522 50.000 0.00 0.00 0.00 2.57
811 813 5.183140 GGAGTAAATTGCACACAAGTACCAT 59.817 40.000 0.00 0.00 39.69 3.55
820 822 4.009675 TGGAGATGGAGTAAATTGCACAC 58.990 43.478 0.00 0.00 0.00 3.82
919 921 1.536662 GTGGAGGTGGAGGTGAGGT 60.537 63.158 0.00 0.00 0.00 3.85
920 922 2.294078 GGTGGAGGTGGAGGTGAGG 61.294 68.421 0.00 0.00 0.00 3.86
922 924 2.603473 CGGTGGAGGTGGAGGTGA 60.603 66.667 0.00 0.00 0.00 4.02
923 925 4.394712 GCGGTGGAGGTGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
1071 1087 1.002274 GGGAAGGAGGAGCTGGAGA 59.998 63.158 0.00 0.00 0.00 3.71
1085 1433 2.361104 GAACGGCAGCATGGGGAA 60.361 61.111 0.00 0.00 35.86 3.97
1549 1900 1.188219 ACCTCTTGAAGCAGGCGAGA 61.188 55.000 9.60 0.00 32.32 4.04
1589 1940 4.941873 ACCCGTTTCAGAATGGAATAAGTC 59.058 41.667 3.92 0.00 43.43 3.01
1590 1941 4.918588 ACCCGTTTCAGAATGGAATAAGT 58.081 39.130 3.92 0.00 43.43 2.24
1591 1942 5.897377 AACCCGTTTCAGAATGGAATAAG 57.103 39.130 3.92 0.00 43.43 1.73
1605 1956 3.058115 GCAACTGCAAAACCCGTTT 57.942 47.368 0.00 0.00 41.59 3.60
1657 2008 9.159364 GTACTGTTTATTTCCCGAAACTAATCT 57.841 33.333 0.00 0.00 36.66 2.40
1683 2049 4.212847 CCATGGATTGATTAGCTCGAACAG 59.787 45.833 5.56 0.00 0.00 3.16
1684 2050 4.129380 CCATGGATTGATTAGCTCGAACA 58.871 43.478 5.56 0.00 0.00 3.18
1685 2051 3.499918 CCCATGGATTGATTAGCTCGAAC 59.500 47.826 15.22 0.00 0.00 3.95
1686 2052 3.496692 CCCCATGGATTGATTAGCTCGAA 60.497 47.826 15.22 0.00 0.00 3.71
1687 2053 2.038952 CCCCATGGATTGATTAGCTCGA 59.961 50.000 15.22 0.00 0.00 4.04
1700 2066 1.073931 TTAACGGTTTCCCCCATGGA 58.926 50.000 15.22 0.00 43.18 3.41
1725 2091 3.506067 CCGAAGCAACATTTCCTAAAGGT 59.494 43.478 0.00 0.00 36.91 3.50
1726 2092 3.506067 ACCGAAGCAACATTTCCTAAAGG 59.494 43.478 0.00 0.00 0.00 3.11
1739 2105 5.698832 CAACTGATTTGATTACCGAAGCAA 58.301 37.500 0.00 0.00 39.13 3.91
1740 2106 4.379394 GCAACTGATTTGATTACCGAAGCA 60.379 41.667 0.00 0.00 37.39 3.91
1746 2112 5.048083 TCAACCAGCAACTGATTTGATTACC 60.048 40.000 0.00 0.00 37.39 2.85
1756 2122 3.076621 CAGCTAATCAACCAGCAACTGA 58.923 45.455 0.00 0.00 40.36 3.41
1821 2187 2.170738 CCGTAATGGGCACACAGTG 58.829 57.895 0.00 0.00 36.51 3.66
1840 2206 4.339247 CCCTTATGGCACTAAAATGTCCAG 59.661 45.833 0.00 0.00 31.95 3.86
1861 2227 6.261118 CGAAAATTGAAGATTCATGACTCCC 58.739 40.000 9.29 3.35 37.00 4.30
1862 2228 6.127897 ACCGAAAATTGAAGATTCATGACTCC 60.128 38.462 9.29 0.00 37.00 3.85
1866 2232 5.401550 GCACCGAAAATTGAAGATTCATGA 58.598 37.500 0.00 0.00 37.00 3.07
1867 2233 4.563976 GGCACCGAAAATTGAAGATTCATG 59.436 41.667 0.00 0.00 37.00 3.07
1868 2234 4.675146 CGGCACCGAAAATTGAAGATTCAT 60.675 41.667 2.01 0.00 42.83 2.57
1869 2235 3.365868 CGGCACCGAAAATTGAAGATTCA 60.366 43.478 2.01 0.00 42.83 2.57
1870 2236 3.119990 TCGGCACCGAAAATTGAAGATTC 60.120 43.478 9.81 0.00 46.01 2.52
1871 2237 2.817258 TCGGCACCGAAAATTGAAGATT 59.183 40.909 9.81 0.00 46.01 2.40
1873 2239 1.885560 TCGGCACCGAAAATTGAAGA 58.114 45.000 9.81 0.00 46.01 2.87
1885 2253 3.243401 CCAAATTTAAGGCTATCGGCACC 60.243 47.826 0.00 0.00 44.01 5.01
1886 2254 3.630312 TCCAAATTTAAGGCTATCGGCAC 59.370 43.478 0.00 0.00 44.01 5.01
1895 2263 2.094026 CCAGCTGGTCCAAATTTAAGGC 60.094 50.000 25.53 0.00 0.00 4.35
1909 2277 2.488355 CAATTGCGAGCCAGCTGG 59.512 61.111 29.34 29.34 38.13 4.85
1913 2281 0.962356 ACTTCCCAATTGCGAGCCAG 60.962 55.000 0.00 0.00 0.00 4.85
1950 2318 1.218316 GCAGACCGTCCCTAGTTGG 59.782 63.158 0.00 0.00 0.00 3.77
1965 2333 2.680913 CCTGCTTTTCCGGTCGCAG 61.681 63.158 21.43 21.43 46.97 5.18
1966 2334 2.668212 CCTGCTTTTCCGGTCGCA 60.668 61.111 0.00 5.46 0.00 5.10
1967 2335 3.431725 CCCTGCTTTTCCGGTCGC 61.432 66.667 0.00 0.35 0.00 5.19
1970 2338 2.597578 ATTAACCCTGCTTTTCCGGT 57.402 45.000 0.00 0.00 0.00 5.28
1971 2339 3.584834 CAAATTAACCCTGCTTTTCCGG 58.415 45.455 0.00 0.00 0.00 5.14
1973 2341 3.580895 TCCCAAATTAACCCTGCTTTTCC 59.419 43.478 0.00 0.00 0.00 3.13
1975 2343 4.904853 TCTTCCCAAATTAACCCTGCTTTT 59.095 37.500 0.00 0.00 0.00 2.27
1983 2356 7.274904 GCTCGTAAATTTCTTCCCAAATTAACC 59.725 37.037 0.00 0.00 35.35 2.85
2031 2404 1.065854 ACTACAGCCATTCCTCACAGC 60.066 52.381 0.00 0.00 0.00 4.40
2045 2418 0.392193 CAGCCCTGCCTTGACTACAG 60.392 60.000 0.00 0.00 0.00 2.74
2046 2419 0.835971 TCAGCCCTGCCTTGACTACA 60.836 55.000 0.00 0.00 0.00 2.74
2047 2420 0.107945 CTCAGCCCTGCCTTGACTAC 60.108 60.000 0.00 0.00 0.00 2.73
2089 2467 6.208988 TCTGCTCGTCAAGTCATTAACTAT 57.791 37.500 0.00 0.00 37.17 2.12
2118 2496 3.002348 GTGTCCAACGGAACTGAGAAAAG 59.998 47.826 0.00 0.00 31.38 2.27
2153 2531 5.523438 CTGTAAGAGTCAGGATTCCCTAC 57.477 47.826 0.00 0.00 36.92 3.18
2162 2541 4.040461 TCCAAAACTCCTGTAAGAGTCAGG 59.960 45.833 5.70 5.70 46.44 3.86
2182 2561 2.158475 AGTCTTGGCACCTGAATTTCCA 60.158 45.455 0.00 0.00 0.00 3.53
2184 2563 3.149196 TCAGTCTTGGCACCTGAATTTC 58.851 45.455 7.92 0.00 32.55 2.17
2187 2566 2.957402 TTCAGTCTTGGCACCTGAAT 57.043 45.000 15.55 0.17 39.58 2.57
2197 2576 6.267817 TCTTCAGTTGCAATTTTCAGTCTTG 58.732 36.000 0.59 0.00 0.00 3.02
2224 2603 1.203038 TCACAACAGTGGGCCAATGAT 60.203 47.619 37.66 25.46 33.46 2.45
2238 2617 7.434013 CCTACTTTACACCAAAACATTCACAAC 59.566 37.037 0.00 0.00 0.00 3.32
2239 2618 7.339721 TCCTACTTTACACCAAAACATTCACAA 59.660 33.333 0.00 0.00 0.00 3.33
2240 2619 6.829298 TCCTACTTTACACCAAAACATTCACA 59.171 34.615 0.00 0.00 0.00 3.58
2241 2620 7.266922 TCCTACTTTACACCAAAACATTCAC 57.733 36.000 0.00 0.00 0.00 3.18
2242 2621 7.883391 TTCCTACTTTACACCAAAACATTCA 57.117 32.000 0.00 0.00 0.00 2.57
2243 2622 8.027189 GGATTCCTACTTTACACCAAAACATTC 58.973 37.037 0.00 0.00 0.00 2.67
2244 2623 7.039293 GGGATTCCTACTTTACACCAAAACATT 60.039 37.037 2.01 0.00 0.00 2.71
2245 2624 6.436218 GGGATTCCTACTTTACACCAAAACAT 59.564 38.462 2.01 0.00 0.00 2.71
2246 2625 5.771165 GGGATTCCTACTTTACACCAAAACA 59.229 40.000 2.01 0.00 0.00 2.83
2247 2626 5.771165 TGGGATTCCTACTTTACACCAAAAC 59.229 40.000 2.01 0.00 0.00 2.43
2248 2627 5.771165 GTGGGATTCCTACTTTACACCAAAA 59.229 40.000 11.70 0.00 0.00 2.44
2249 2628 5.073965 AGTGGGATTCCTACTTTACACCAAA 59.926 40.000 15.47 0.00 0.00 3.28
2250 2629 4.600111 AGTGGGATTCCTACTTTACACCAA 59.400 41.667 15.47 0.00 0.00 3.67
2251 2630 4.019681 CAGTGGGATTCCTACTTTACACCA 60.020 45.833 18.30 0.00 0.00 4.17
2252 2631 4.019591 ACAGTGGGATTCCTACTTTACACC 60.020 45.833 18.30 0.00 0.00 4.16
2253 2632 5.161943 ACAGTGGGATTCCTACTTTACAC 57.838 43.478 18.30 8.21 0.00 2.90
2254 2633 5.072600 ACAACAGTGGGATTCCTACTTTACA 59.927 40.000 18.30 0.00 0.00 2.41
2255 2634 5.411669 CACAACAGTGGGATTCCTACTTTAC 59.588 44.000 18.30 1.78 0.00 2.01
2256 2635 5.308497 TCACAACAGTGGGATTCCTACTTTA 59.692 40.000 18.30 0.00 29.90 1.85
2257 2636 4.104102 TCACAACAGTGGGATTCCTACTTT 59.896 41.667 18.30 10.32 29.90 2.66
2258 2637 3.650942 TCACAACAGTGGGATTCCTACTT 59.349 43.478 18.30 8.20 29.90 2.24
2259 2638 3.248024 TCACAACAGTGGGATTCCTACT 58.752 45.455 15.47 15.47 29.90 2.57
2260 2639 3.695830 TCACAACAGTGGGATTCCTAC 57.304 47.619 11.06 11.06 29.90 3.18
2261 2640 4.042809 ACATTCACAACAGTGGGATTCCTA 59.957 41.667 2.01 0.00 36.92 2.94
2262 2641 3.181429 ACATTCACAACAGTGGGATTCCT 60.181 43.478 2.01 0.00 36.92 3.36
2263 2642 3.157087 ACATTCACAACAGTGGGATTCC 58.843 45.455 0.00 0.00 36.92 3.01
2264 2643 4.853924 AACATTCACAACAGTGGGATTC 57.146 40.909 0.00 0.00 36.92 2.52
2265 2644 5.358922 CAAAACATTCACAACAGTGGGATT 58.641 37.500 0.00 0.00 36.92 3.01
2266 2645 4.202243 CCAAAACATTCACAACAGTGGGAT 60.202 41.667 0.00 0.00 36.92 3.85
2267 2646 3.131933 CCAAAACATTCACAACAGTGGGA 59.868 43.478 0.00 0.00 34.48 4.37
2268 2647 3.118811 ACCAAAACATTCACAACAGTGGG 60.119 43.478 0.00 0.00 34.04 4.61
2269 2648 3.864583 CACCAAAACATTCACAACAGTGG 59.135 43.478 0.00 0.00 34.04 4.00
2270 2649 4.493547 ACACCAAAACATTCACAACAGTG 58.506 39.130 0.00 0.00 34.56 3.66
2271 2650 4.219507 TGACACCAAAACATTCACAACAGT 59.780 37.500 0.00 0.00 0.00 3.55
2272 2651 4.742417 TGACACCAAAACATTCACAACAG 58.258 39.130 0.00 0.00 0.00 3.16
2273 2652 4.790765 TGACACCAAAACATTCACAACA 57.209 36.364 0.00 0.00 0.00 3.33
2284 2663 6.708949 GTCTACATTCCTACTTGACACCAAAA 59.291 38.462 0.00 0.00 0.00 2.44
2288 2667 4.466726 AGGTCTACATTCCTACTTGACACC 59.533 45.833 0.00 0.00 31.66 4.16
2302 2681 4.884961 AGACATTCCCAGTAGGTCTACAT 58.115 43.478 10.34 0.00 37.08 2.29
2306 2685 4.230964 AGACTAGACATTCCCAGTAGGTCT 59.769 45.833 0.00 0.00 41.37 3.85
2336 2715 7.042335 AGACAAATATTTAGGAACAGACGGAG 58.958 38.462 0.00 0.00 0.00 4.63
2337 2716 6.942976 AGACAAATATTTAGGAACAGACGGA 58.057 36.000 0.00 0.00 0.00 4.69
2338 2717 7.611213 AAGACAAATATTTAGGAACAGACGG 57.389 36.000 0.00 0.00 0.00 4.79
2339 2718 8.936864 AGAAAGACAAATATTTAGGAACAGACG 58.063 33.333 0.00 0.00 0.00 4.18
2355 2734 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2356 2735 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2357 2736 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2358 2737 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2359 2738 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2360 2739 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2361 2740 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2362 2741 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2363 2742 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2364 2743 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2366 2745 9.376075 CATATGTAGTCACTTGTTGAAATCTCT 57.624 33.333 0.00 0.00 35.39 3.10
2367 2746 8.607459 CCATATGTAGTCACTTGTTGAAATCTC 58.393 37.037 1.24 0.00 35.39 2.75
2368 2747 8.321353 TCCATATGTAGTCACTTGTTGAAATCT 58.679 33.333 1.24 0.00 35.39 2.40
2369 2748 8.492673 TCCATATGTAGTCACTTGTTGAAATC 57.507 34.615 1.24 0.00 35.39 2.17
2370 2749 7.066284 GCTCCATATGTAGTCACTTGTTGAAAT 59.934 37.037 1.24 0.00 35.39 2.17
2371 2750 6.371548 GCTCCATATGTAGTCACTTGTTGAAA 59.628 38.462 1.24 0.00 35.39 2.69
2372 2751 5.874810 GCTCCATATGTAGTCACTTGTTGAA 59.125 40.000 1.24 0.00 35.39 2.69
2373 2752 5.187772 AGCTCCATATGTAGTCACTTGTTGA 59.812 40.000 1.24 0.00 0.00 3.18
2374 2753 5.423015 AGCTCCATATGTAGTCACTTGTTG 58.577 41.667 1.24 0.00 0.00 3.33
2375 2754 5.683876 AGCTCCATATGTAGTCACTTGTT 57.316 39.130 1.24 0.00 0.00 2.83
2376 2755 6.791867 TTAGCTCCATATGTAGTCACTTGT 57.208 37.500 1.24 0.00 0.00 3.16
2377 2756 7.928167 TCATTTAGCTCCATATGTAGTCACTTG 59.072 37.037 1.24 0.00 0.00 3.16
2378 2757 8.023021 TCATTTAGCTCCATATGTAGTCACTT 57.977 34.615 1.24 0.00 0.00 3.16
2379 2758 7.288852 ACTCATTTAGCTCCATATGTAGTCACT 59.711 37.037 1.24 0.00 0.00 3.41
2380 2759 7.383572 CACTCATTTAGCTCCATATGTAGTCAC 59.616 40.741 1.24 0.00 0.00 3.67
2381 2760 7.287696 TCACTCATTTAGCTCCATATGTAGTCA 59.712 37.037 1.24 0.00 0.00 3.41
2382 2761 7.661968 TCACTCATTTAGCTCCATATGTAGTC 58.338 38.462 1.24 0.00 0.00 2.59
2383 2762 7.603180 TCACTCATTTAGCTCCATATGTAGT 57.397 36.000 1.24 0.00 0.00 2.73
2384 2763 9.149225 GATTCACTCATTTAGCTCCATATGTAG 57.851 37.037 1.24 0.00 0.00 2.74
2385 2764 8.874156 AGATTCACTCATTTAGCTCCATATGTA 58.126 33.333 1.24 0.00 0.00 2.29
2386 2765 7.743749 AGATTCACTCATTTAGCTCCATATGT 58.256 34.615 1.24 0.00 0.00 2.29
2387 2766 9.149225 GTAGATTCACTCATTTAGCTCCATATG 57.851 37.037 0.00 0.00 0.00 1.78
2388 2767 8.874156 TGTAGATTCACTCATTTAGCTCCATAT 58.126 33.333 0.00 0.00 0.00 1.78
2389 2768 8.144478 GTGTAGATTCACTCATTTAGCTCCATA 58.856 37.037 0.00 0.00 35.68 2.74
2390 2769 6.989169 GTGTAGATTCACTCATTTAGCTCCAT 59.011 38.462 0.00 0.00 35.68 3.41
2391 2770 6.155221 AGTGTAGATTCACTCATTTAGCTCCA 59.845 38.462 0.00 0.00 44.07 3.86
2392 2771 6.578023 AGTGTAGATTCACTCATTTAGCTCC 58.422 40.000 0.00 0.00 44.07 4.70
2423 2802 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2425 2804 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2426 2805 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2427 2806 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2428 2807 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
2429 2808 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
2430 2809 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
2431 2810 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
2432 2811 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
2433 2812 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2434 2813 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2450 2829 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2451 2830 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2468 2847 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2469 2848 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2470 2849 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2471 2850 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2472 2851 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2473 2852 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2474 2853 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2475 2854 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2476 2855 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2477 2856 5.543020 CCTACTCCCTCCGTTCCTAAATATT 59.457 44.000 0.00 0.00 0.00 1.28
2478 2857 5.085219 CCTACTCCCTCCGTTCCTAAATAT 58.915 45.833 0.00 0.00 0.00 1.28
2479 2858 4.168675 TCCTACTCCCTCCGTTCCTAAATA 59.831 45.833 0.00 0.00 0.00 1.40
2480 2859 3.052338 TCCTACTCCCTCCGTTCCTAAAT 60.052 47.826 0.00 0.00 0.00 1.40
2481 2860 2.312741 TCCTACTCCCTCCGTTCCTAAA 59.687 50.000 0.00 0.00 0.00 1.85
2482 2861 1.925255 TCCTACTCCCTCCGTTCCTAA 59.075 52.381 0.00 0.00 0.00 2.69
2483 2862 1.600058 TCCTACTCCCTCCGTTCCTA 58.400 55.000 0.00 0.00 0.00 2.94
2484 2863 0.708802 TTCCTACTCCCTCCGTTCCT 59.291 55.000 0.00 0.00 0.00 3.36
2485 2864 1.687660 GATTCCTACTCCCTCCGTTCC 59.312 57.143 0.00 0.00 0.00 3.62
2486 2865 2.385803 TGATTCCTACTCCCTCCGTTC 58.614 52.381 0.00 0.00 0.00 3.95
2487 2866 2.544844 TGATTCCTACTCCCTCCGTT 57.455 50.000 0.00 0.00 0.00 4.44
2488 2867 2.320781 CATGATTCCTACTCCCTCCGT 58.679 52.381 0.00 0.00 0.00 4.69
2489 2868 1.620819 CCATGATTCCTACTCCCTCCG 59.379 57.143 0.00 0.00 0.00 4.63
2490 2869 2.635427 GACCATGATTCCTACTCCCTCC 59.365 54.545 0.00 0.00 0.00 4.30
2491 2870 3.323403 CAGACCATGATTCCTACTCCCTC 59.677 52.174 0.00 0.00 0.00 4.30
2492 2871 3.312890 CAGACCATGATTCCTACTCCCT 58.687 50.000 0.00 0.00 0.00 4.20
2493 2872 2.370189 CCAGACCATGATTCCTACTCCC 59.630 54.545 0.00 0.00 0.00 4.30
2494 2873 3.070302 GTCCAGACCATGATTCCTACTCC 59.930 52.174 0.00 0.00 0.00 3.85
2495 2874 3.964031 AGTCCAGACCATGATTCCTACTC 59.036 47.826 0.00 0.00 0.00 2.59
2496 2875 4.000928 AGTCCAGACCATGATTCCTACT 57.999 45.455 0.00 0.00 0.00 2.57
2497 2876 5.279708 CCATAGTCCAGACCATGATTCCTAC 60.280 48.000 7.65 0.00 33.23 3.18
2498 2877 4.840680 CCATAGTCCAGACCATGATTCCTA 59.159 45.833 7.65 0.00 33.23 2.94
2499 2878 3.649981 CCATAGTCCAGACCATGATTCCT 59.350 47.826 7.65 0.00 33.23 3.36
2500 2879 3.648067 TCCATAGTCCAGACCATGATTCC 59.352 47.826 7.65 0.00 33.23 3.01
2501 2880 4.346418 ACTCCATAGTCCAGACCATGATTC 59.654 45.833 7.65 0.00 33.23 2.52
2502 2881 4.302067 ACTCCATAGTCCAGACCATGATT 58.698 43.478 7.65 0.00 33.23 2.57
2503 2882 3.933886 ACTCCATAGTCCAGACCATGAT 58.066 45.455 7.65 0.00 33.23 2.45
2504 2883 3.404869 ACTCCATAGTCCAGACCATGA 57.595 47.619 7.65 0.00 33.23 3.07
2505 2884 3.006323 GCTACTCCATAGTCCAGACCATG 59.994 52.174 0.00 0.00 37.15 3.66
2506 2885 3.116939 AGCTACTCCATAGTCCAGACCAT 60.117 47.826 0.00 0.00 37.15 3.55
2507 2886 2.245028 AGCTACTCCATAGTCCAGACCA 59.755 50.000 0.00 0.00 37.15 4.02
2508 2887 2.952116 AGCTACTCCATAGTCCAGACC 58.048 52.381 0.00 0.00 37.15 3.85
2509 2888 4.202172 GGAAAGCTACTCCATAGTCCAGAC 60.202 50.000 9.44 0.00 37.15 3.51
2510 2889 3.961408 GGAAAGCTACTCCATAGTCCAGA 59.039 47.826 9.44 0.00 37.15 3.86
2511 2890 3.964031 AGGAAAGCTACTCCATAGTCCAG 59.036 47.826 15.37 0.00 37.15 3.86
2512 2891 3.995636 AGGAAAGCTACTCCATAGTCCA 58.004 45.455 15.37 0.00 37.15 4.02
2513 2892 4.698575 CAAGGAAAGCTACTCCATAGTCC 58.301 47.826 15.37 0.00 37.15 3.85
2514 2893 4.123506 GCAAGGAAAGCTACTCCATAGTC 58.876 47.826 15.37 0.00 37.15 2.59
2515 2894 3.519510 TGCAAGGAAAGCTACTCCATAGT 59.480 43.478 15.37 0.00 39.91 2.12
2648 3027 7.775561 AGACATTTGAACTGGAGAAAGTTTACT 59.224 33.333 0.00 0.00 40.48 2.24
2718 3097 9.647918 TCCTCACTTACATTATCTATCTCAACT 57.352 33.333 0.00 0.00 0.00 3.16
2763 3143 1.001745 GCGCCACATCGTTTCCAAAC 61.002 55.000 0.00 0.00 35.59 2.93
2781 3161 0.807496 GAGTGGAAGGTTCAGCATGC 59.193 55.000 10.51 10.51 34.76 4.06
2789 3169 1.202770 CGGGTTCTTGAGTGGAAGGTT 60.203 52.381 0.00 0.00 0.00 3.50
2889 3269 0.179034 GCCGAGGATCTTTGAGCCAT 60.179 55.000 4.65 0.00 41.08 4.40
2960 3340 8.419076 TTTTTAGAAAGCACCAAGAACAAATC 57.581 30.769 0.00 0.00 0.00 2.17
3004 3385 9.685276 TGTTCAAATGACCATCAGTAGATATTT 57.315 29.630 0.00 0.00 31.88 1.40
3014 3395 8.511321 GTTACTTACATGTTCAAATGACCATCA 58.489 33.333 2.30 0.00 0.00 3.07
3183 4545 8.668510 AGTATGGCAATATTTCAGTGACTTAG 57.331 34.615 0.00 0.00 29.14 2.18
3202 4564 6.992063 AGCTACACAAATCTCAAAGTATGG 57.008 37.500 0.00 0.00 0.00 2.74
3488 4857 9.593134 CTCTTCCTTGTAGATAATATATGCCAC 57.407 37.037 0.00 0.00 0.00 5.01
3634 5004 1.890573 GCAATGTCCCTAAAGGCACCA 60.891 52.381 0.00 0.00 34.51 4.17
4342 16585 5.136105 ACTGGAACTTCAAAAGATCAAGCT 58.864 37.500 0.00 0.00 35.39 3.74
4380 16627 6.476243 ACTTCATTACTTCATTTTACGCGT 57.524 33.333 19.17 19.17 0.00 6.01
4386 16650 9.878599 CTACGAACAACTTCATTACTTCATTTT 57.121 29.630 0.00 0.00 0.00 1.82
4405 16669 5.581085 AGATTTGCCACTATGAACTACGAAC 59.419 40.000 0.00 0.00 0.00 3.95
4474 16749 4.127171 GCTAAACTGTCTGAAACTCCACA 58.873 43.478 0.00 0.00 0.00 4.17
4550 16825 9.739276 AATTGATAGACAATAGACCAAGAAACA 57.261 29.630 0.00 0.00 46.90 2.83
4679 16962 2.303549 TTTGGGTGCTGGCAAAACCG 62.304 55.000 11.06 0.00 43.94 4.44
4682 16965 0.835941 ACATTTGGGTGCTGGCAAAA 59.164 45.000 0.00 0.00 0.00 2.44
4691 16974 5.350091 ACGTTCAAAAGAAAACATTTGGGTG 59.650 36.000 0.00 0.00 37.19 4.61
4723 17006 2.099592 TCTGCAAAATTGGATCATCCGC 59.900 45.455 0.00 0.00 40.17 5.54
4733 17016 7.543868 TGACGGGTTAAAATATCTGCAAAATTG 59.456 33.333 0.00 0.00 0.00 2.32
4763 17046 9.781834 CACAAATTAACTAGTTTGAACAAGACA 57.218 29.630 14.49 0.00 36.68 3.41
4806 17089 1.127582 GCGACAACAGCATGAGAAGAC 59.872 52.381 0.00 0.00 39.69 3.01
4813 17096 0.952497 ACAGAGGCGACAACAGCATG 60.952 55.000 0.00 0.00 46.00 4.06
4814 17097 0.250467 AACAGAGGCGACAACAGCAT 60.250 50.000 0.00 0.00 36.08 3.79
4821 17151 0.944386 GAAGCAAAACAGAGGCGACA 59.056 50.000 0.00 0.00 0.00 4.35
4837 17167 0.868406 ACAGAAAAAGGCGCTCGAAG 59.132 50.000 7.64 0.00 0.00 3.79
4863 17194 2.095212 GCGAAACTAGGGGCTTCAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
4864 17195 1.883926 GCGAAACTAGGGGCTTCAAAA 59.116 47.619 0.00 0.00 0.00 2.44
4873 17204 1.952102 TAGGTGCGGCGAAACTAGGG 61.952 60.000 9.00 0.00 0.00 3.53
4881 17212 2.676632 TATCTTTTTAGGTGCGGCGA 57.323 45.000 12.98 0.00 0.00 5.54
4882 17213 2.612212 ACATATCTTTTTAGGTGCGGCG 59.388 45.455 0.51 0.51 0.00 6.46
4883 17214 3.877508 AGACATATCTTTTTAGGTGCGGC 59.122 43.478 0.00 0.00 0.00 6.53
4909 17277 8.466617 TCTACTAGTTCAGTATCTCCCATTTC 57.533 38.462 0.00 0.00 39.06 2.17
4959 17367 7.500559 AGTTTATTCATTCTCTCACAATAGGCC 59.499 37.037 0.00 0.00 0.00 5.19
4988 17458 3.993081 ACGAAGCAACTCAGAAGATTCAG 59.007 43.478 0.00 0.00 0.00 3.02
5020 17515 5.183904 GGTTCAGAGGATTTACAGCAAACAT 59.816 40.000 0.00 0.00 0.00 2.71
5040 17546 5.046950 CCAAGGGCTAGAGATGTATAGGTTC 60.047 48.000 0.00 0.00 0.00 3.62
5042 17548 4.108124 TCCAAGGGCTAGAGATGTATAGGT 59.892 45.833 0.00 0.00 0.00 3.08
5043 17549 4.678256 TCCAAGGGCTAGAGATGTATAGG 58.322 47.826 0.00 0.00 0.00 2.57
5044 17550 5.337169 GCTTCCAAGGGCTAGAGATGTATAG 60.337 48.000 0.00 0.00 0.00 1.31
5045 17551 4.528596 GCTTCCAAGGGCTAGAGATGTATA 59.471 45.833 0.00 0.00 0.00 1.47
5046 17552 3.326297 GCTTCCAAGGGCTAGAGATGTAT 59.674 47.826 0.00 0.00 0.00 2.29
5047 17553 2.700897 GCTTCCAAGGGCTAGAGATGTA 59.299 50.000 0.00 0.00 0.00 2.29
5049 17555 1.487976 TGCTTCCAAGGGCTAGAGATG 59.512 52.381 0.00 0.00 0.00 2.90
5050 17556 1.885049 TGCTTCCAAGGGCTAGAGAT 58.115 50.000 0.00 0.00 0.00 2.75
5051 17557 1.656587 TTGCTTCCAAGGGCTAGAGA 58.343 50.000 0.00 0.00 0.00 3.10
5053 17559 2.843730 TGTATTGCTTCCAAGGGCTAGA 59.156 45.455 0.00 0.00 33.80 2.43
5055 17561 2.356741 GGTGTATTGCTTCCAAGGGCTA 60.357 50.000 0.00 0.00 33.80 3.93
5056 17562 1.616994 GGTGTATTGCTTCCAAGGGCT 60.617 52.381 0.00 0.00 33.80 5.19
5057 17563 0.817654 GGTGTATTGCTTCCAAGGGC 59.182 55.000 0.00 0.00 33.80 5.19
5058 17564 2.369394 GAGGTGTATTGCTTCCAAGGG 58.631 52.381 0.00 0.00 33.80 3.95
5059 17565 2.290896 TGGAGGTGTATTGCTTCCAAGG 60.291 50.000 0.00 0.00 35.13 3.61
5060 17566 3.012518 CTGGAGGTGTATTGCTTCCAAG 58.987 50.000 0.00 0.00 37.48 3.61
5062 17568 1.340017 GCTGGAGGTGTATTGCTTCCA 60.340 52.381 0.00 0.00 36.55 3.53
5063 17569 1.383523 GCTGGAGGTGTATTGCTTCC 58.616 55.000 0.00 0.00 0.00 3.46
5189 17695 8.173410 AGTTAGAACTGGAATTGCACTTGCAG 62.173 42.308 28.66 28.66 46.47 4.41
5241 17747 3.440173 GGTTCACACCAATGATACCACAG 59.560 47.826 0.00 0.00 43.61 3.66
5257 17769 1.264288 CTTGGTCTTCGCTTGGTTCAC 59.736 52.381 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.