Multiple sequence alignment - TraesCS4A01G370200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G370200 chr4A 100.000 2276 0 0 1 2276 641601488 641603763 0.000000e+00 4204
1 TraesCS4A01G370200 chr4A 94.090 643 30 5 1461 2100 641607938 641608575 0.000000e+00 970
2 TraesCS4A01G370200 chr4A 80.874 847 67 47 880 1690 641610575 641611362 1.520000e-161 579
3 TraesCS4A01G370200 chr4A 83.535 413 37 21 880 1278 686385671 686385276 7.730000e-95 357
4 TraesCS4A01G370200 chr4A 93.478 92 1 2 2098 2184 655652424 655652515 5.100000e-27 132
5 TraesCS4A01G370200 chr4A 92.308 91 6 1 1920 2009 641611556 641611646 6.600000e-26 128
6 TraesCS4A01G370200 chr4D 81.262 539 50 34 170 704 479963184 479962693 2.740000e-104 388
7 TraesCS4A01G370200 chr4D 81.330 466 44 19 97 557 465910163 465909736 2.800000e-89 339
8 TraesCS4A01G370200 chr4D 86.885 305 30 4 990 1291 465908895 465908598 1.300000e-87 333
9 TraesCS4A01G370200 chr4D 91.160 181 12 3 63 242 479963355 479963178 2.260000e-60 243
10 TraesCS4A01G370200 chr4D 100.000 91 0 0 2186 2276 63985849 63985939 3.890000e-38 169
11 TraesCS4A01G370200 chr4B 88.710 310 25 8 170 479 607288876 607288577 9.930000e-99 370
12 TraesCS4A01G370200 chr4B 88.026 309 19 9 988 1287 582956876 582956577 1.290000e-92 350
13 TraesCS4A01G370200 chr2D 74.411 891 126 57 880 1725 582494978 582494145 2.860000e-74 289
14 TraesCS4A01G370200 chr2D 82.405 341 32 13 880 1210 488229103 488229425 2.880000e-69 272
15 TraesCS4A01G370200 chr2D 92.553 94 2 2 2096 2184 112924683 112924590 1.830000e-26 130
16 TraesCS4A01G370200 chr2D 92.553 94 2 2 2096 2184 540821514 540821421 1.830000e-26 130
17 TraesCS4A01G370200 chr2D 88.750 80 9 0 1943 2022 582495512 582495433 5.170000e-17 99
18 TraesCS4A01G370200 chr5D 79.762 420 49 17 880 1278 371440970 371440566 2.880000e-69 272
19 TraesCS4A01G370200 chr5B 79.196 423 51 19 880 1278 441446471 441446062 2.240000e-65 259
20 TraesCS4A01G370200 chr5B 92.553 94 2 2 2096 2184 606465158 606465251 1.830000e-26 130
21 TraesCS4A01G370200 chr7B 81.848 303 46 5 988 1287 630651824 630651528 1.750000e-61 246
22 TraesCS4A01G370200 chr7B 100.000 91 0 0 2186 2276 126733689 126733779 3.890000e-38 169
23 TraesCS4A01G370200 chr7B 92.553 94 2 3 2096 2184 734380394 734380301 1.830000e-26 130
24 TraesCS4A01G370200 chr7A 80.198 303 48 8 988 1287 662143535 662143242 1.370000e-52 217
25 TraesCS4A01G370200 chr7A 81.679 262 42 4 1026 1287 662169731 662169476 1.770000e-51 213
26 TraesCS4A01G370200 chr7A 92.553 94 2 2 2096 2184 26172625 26172718 1.830000e-26 130
27 TraesCS4A01G370200 chr5A 100.000 91 0 0 2186 2276 9777178 9777088 3.890000e-38 169
28 TraesCS4A01G370200 chr3D 100.000 91 0 0 2186 2276 590457866 590457956 3.890000e-38 169
29 TraesCS4A01G370200 chr1D 100.000 91 0 0 2186 2276 183710625 183710715 3.890000e-38 169
30 TraesCS4A01G370200 chr1B 97.000 100 3 0 2177 2276 611694305 611694206 3.890000e-38 169
31 TraesCS4A01G370200 chr1B 91.667 96 3 2 2094 2184 14952501 14952596 6.600000e-26 128
32 TraesCS4A01G370200 chr1B 91.667 96 3 2 2094 2184 14994265 14994360 6.600000e-26 128
33 TraesCS4A01G370200 chr3A 96.078 102 2 2 2174 2275 486228707 486228806 5.030000e-37 165
34 TraesCS4A01G370200 chr2A 96.040 101 3 1 2176 2276 15702507 15702408 1.810000e-36 163
35 TraesCS4A01G370200 chr2A 95.098 102 3 2 2175 2276 518889998 518890097 2.340000e-35 159
36 TraesCS4A01G370200 chr2B 92.553 94 2 3 2096 2184 52343073 52342980 1.830000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G370200 chr4A 641601488 641603763 2275 False 4204.0 4204 100.000000 1 2276 1 chr4A.!!$F1 2275
1 TraesCS4A01G370200 chr4A 641607938 641611646 3708 False 559.0 970 89.090667 880 2100 3 chr4A.!!$F3 1220
2 TraesCS4A01G370200 chr4D 465908598 465910163 1565 True 336.0 339 84.107500 97 1291 2 chr4D.!!$R1 1194
3 TraesCS4A01G370200 chr4D 479962693 479963355 662 True 315.5 388 86.211000 63 704 2 chr4D.!!$R2 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 664 0.038159 GCGGCGAGCTGGAGTTATAT 60.038 55.0 12.98 0.0 44.04 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 3907 0.032952 TGGGTTCGTTTCGTCTCCTG 59.967 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.754043 ATTGGGCCGGGATCAAGA 58.246 55.556 2.18 0.00 0.00 3.02
19 20 2.631012 ATTGGGCCGGGATCAAGAGC 62.631 60.000 2.18 0.00 0.00 4.09
20 21 3.483869 GGGCCGGGATCAAGAGCT 61.484 66.667 2.18 0.00 0.00 4.09
22 23 1.696097 GGGCCGGGATCAAGAGCTAA 61.696 60.000 2.18 0.00 0.00 3.09
23 24 0.180406 GGCCGGGATCAAGAGCTAAA 59.820 55.000 2.18 0.00 0.00 1.85
26 27 3.496160 GGCCGGGATCAAGAGCTAAATTA 60.496 47.826 2.18 0.00 0.00 1.40
27 28 4.327680 GCCGGGATCAAGAGCTAAATTAT 58.672 43.478 2.18 0.00 0.00 1.28
28 29 4.762251 GCCGGGATCAAGAGCTAAATTATT 59.238 41.667 2.18 0.00 0.00 1.40
29 30 5.335191 GCCGGGATCAAGAGCTAAATTATTG 60.335 44.000 2.18 0.00 0.00 1.90
31 32 6.486657 CCGGGATCAAGAGCTAAATTATTGAA 59.513 38.462 0.00 0.00 33.91 2.69
32 33 7.355778 CGGGATCAAGAGCTAAATTATTGAAC 58.644 38.462 0.00 0.00 33.91 3.18
37 38 9.896645 ATCAAGAGCTAAATTATTGAACTCTGA 57.103 29.630 0.00 0.00 33.91 3.27
38 39 9.725019 TCAAGAGCTAAATTATTGAACTCTGAA 57.275 29.630 0.00 0.00 33.51 3.02
39 40 9.985318 CAAGAGCTAAATTATTGAACTCTGAAG 57.015 33.333 0.00 0.00 33.51 3.02
40 41 9.950496 AAGAGCTAAATTATTGAACTCTGAAGA 57.050 29.630 0.00 0.00 33.51 2.87
41 42 9.377312 AGAGCTAAATTATTGAACTCTGAAGAC 57.623 33.333 0.00 0.00 32.06 3.01
43 44 7.819900 AGCTAAATTATTGAACTCTGAAGACGT 59.180 33.333 0.00 0.00 0.00 4.34
44 45 7.900352 GCTAAATTATTGAACTCTGAAGACGTG 59.100 37.037 0.00 0.00 0.00 4.49
45 46 7.962964 AAATTATTGAACTCTGAAGACGTGA 57.037 32.000 0.00 0.00 0.00 4.35
46 47 7.962964 AATTATTGAACTCTGAAGACGTGAA 57.037 32.000 0.00 0.00 0.00 3.18
47 48 6.764877 TTATTGAACTCTGAAGACGTGAAC 57.235 37.500 0.00 0.00 0.00 3.18
48 49 3.793797 TGAACTCTGAAGACGTGAACA 57.206 42.857 0.00 0.00 0.00 3.18
49 50 4.118093 TGAACTCTGAAGACGTGAACAA 57.882 40.909 0.00 0.00 0.00 2.83
50 51 4.500127 TGAACTCTGAAGACGTGAACAAA 58.500 39.130 0.00 0.00 0.00 2.83
51 52 4.566759 TGAACTCTGAAGACGTGAACAAAG 59.433 41.667 0.00 0.00 0.00 2.77
53 54 4.113354 ACTCTGAAGACGTGAACAAAGTC 58.887 43.478 0.00 0.00 35.30 3.01
54 55 4.112634 CTCTGAAGACGTGAACAAAGTCA 58.887 43.478 0.00 0.00 37.36 3.41
55 56 4.693283 TCTGAAGACGTGAACAAAGTCAT 58.307 39.130 0.00 3.12 37.36 3.06
56 57 4.745125 TCTGAAGACGTGAACAAAGTCATC 59.255 41.667 0.00 10.20 37.36 2.92
57 58 4.438148 TGAAGACGTGAACAAAGTCATCA 58.562 39.130 0.00 12.05 39.34 3.07
58 59 5.056480 TGAAGACGTGAACAAAGTCATCAT 58.944 37.500 0.00 0.70 37.59 2.45
59 60 5.177511 TGAAGACGTGAACAAAGTCATCATC 59.822 40.000 0.00 7.22 37.59 2.92
60 61 3.675225 AGACGTGAACAAAGTCATCATCG 59.325 43.478 0.00 0.00 37.36 3.84
77 78 2.901042 GGAGCCTCAACCTACCGG 59.099 66.667 0.00 0.00 0.00 5.28
78 79 2.187163 GAGCCTCAACCTACCGGC 59.813 66.667 0.00 0.00 42.79 6.13
79 80 2.606519 AGCCTCAACCTACCGGCA 60.607 61.111 0.00 0.00 44.85 5.69
92 93 0.745845 ACCGGCAGCATCTCATCAAC 60.746 55.000 0.00 0.00 0.00 3.18
107 109 7.962995 TCTCATCAACAGAAACCTATCTAGT 57.037 36.000 0.00 0.00 0.00 2.57
133 135 1.154205 CGACGATGGTCTTGATGGGC 61.154 60.000 6.29 0.00 41.16 5.36
232 267 4.112341 GTCGTGTACTCGCCGGCT 62.112 66.667 26.68 8.66 0.00 5.52
270 338 4.785453 GCTGGCCCAGTAGCGCTT 62.785 66.667 18.68 0.00 33.43 4.68
311 379 2.337749 CTTGATCCCCTCCGTCGTCG 62.338 65.000 0.00 0.00 0.00 5.12
313 381 2.827642 ATCCCCTCCGTCGTCGTC 60.828 66.667 0.71 0.00 35.01 4.20
502 576 4.438744 CGTCAAGAAAATGCTATGGAACCC 60.439 45.833 0.00 0.00 0.00 4.11
504 578 4.462483 TCAAGAAAATGCTATGGAACCCAC 59.538 41.667 0.00 0.00 35.80 4.61
507 581 0.106719 AATGCTATGGAACCCACCGG 60.107 55.000 0.00 0.00 35.80 5.28
510 584 1.988015 CTATGGAACCCACCGGTGT 59.012 57.895 31.80 15.16 43.71 4.16
540 614 3.137360 AGAGGAGAGGTTTGGATATTGCC 59.863 47.826 0.00 0.00 0.00 4.52
566 641 1.170919 GCTGATGCTGCTATGGGGTG 61.171 60.000 0.00 0.00 36.03 4.61
568 643 0.107066 TGATGCTGCTATGGGGTGTG 60.107 55.000 0.00 0.00 0.00 3.82
589 664 0.038159 GCGGCGAGCTGGAGTTATAT 60.038 55.000 12.98 0.00 44.04 0.86
595 670 3.506455 GCGAGCTGGAGTTATATAGGACA 59.494 47.826 0.00 0.00 0.00 4.02
596 671 4.380023 GCGAGCTGGAGTTATATAGGACAG 60.380 50.000 0.00 0.00 0.00 3.51
600 675 4.081917 GCTGGAGTTATATAGGACAGGAGC 60.082 50.000 0.00 0.00 0.00 4.70
602 677 5.655394 TGGAGTTATATAGGACAGGAGCAT 58.345 41.667 0.00 0.00 0.00 3.79
606 681 6.256819 AGTTATATAGGACAGGAGCATAGCA 58.743 40.000 0.00 0.00 0.00 3.49
628 703 1.873591 GCGCTTGTTTCTTGAGGAGAA 59.126 47.619 0.00 0.00 42.56 2.87
667 1160 3.882131 GCAGGGTGCAAGGATAGAA 57.118 52.632 0.00 0.00 44.26 2.10
669 1162 1.745653 GCAGGGTGCAAGGATAGAAAC 59.254 52.381 0.00 0.00 44.26 2.78
670 1163 2.879756 GCAGGGTGCAAGGATAGAAACA 60.880 50.000 0.00 0.00 44.26 2.83
672 1165 2.912956 AGGGTGCAAGGATAGAAACAGA 59.087 45.455 0.00 0.00 0.00 3.41
674 1167 3.055094 GGGTGCAAGGATAGAAACAGAGA 60.055 47.826 0.00 0.00 0.00 3.10
675 1168 3.935828 GGTGCAAGGATAGAAACAGAGAC 59.064 47.826 0.00 0.00 0.00 3.36
676 1169 4.563580 GGTGCAAGGATAGAAACAGAGACA 60.564 45.833 0.00 0.00 0.00 3.41
677 1170 4.390297 GTGCAAGGATAGAAACAGAGACAC 59.610 45.833 0.00 0.00 0.00 3.67
680 1173 5.567623 GCAAGGATAGAAACAGAGACACAGA 60.568 44.000 0.00 0.00 0.00 3.41
698 1191 0.179142 GAAGTAGCTCCCGTTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
704 1197 3.934391 CTCCCGTTCCGTCTGCACC 62.934 68.421 0.00 0.00 0.00 5.01
711 1204 4.323477 CCGTCTGCACCCGGGAAA 62.323 66.667 32.02 11.20 40.54 3.13
722 1215 1.308998 CCCGGGAAAGGAAATCATCG 58.691 55.000 18.48 0.00 0.00 3.84
725 1218 2.627945 CGGGAAAGGAAATCATCGTGA 58.372 47.619 0.00 0.00 0.00 4.35
752 1271 1.203052 CTCCGAAGTGGCCGTTAGTTA 59.797 52.381 0.00 0.00 37.80 2.24
776 1295 4.402616 TCCAATCCAATCCAAGAAGGTT 57.597 40.909 0.00 0.00 39.02 3.50
777 1296 4.088634 TCCAATCCAATCCAAGAAGGTTG 58.911 43.478 0.00 0.00 39.02 3.77
778 1297 3.196254 CCAATCCAATCCAAGAAGGTTGG 59.804 47.826 0.00 0.00 43.84 3.77
779 1298 3.833559 ATCCAATCCAAGAAGGTTGGT 57.166 42.857 3.64 0.00 43.39 3.67
780 1299 3.611025 TCCAATCCAAGAAGGTTGGTT 57.389 42.857 3.64 0.00 43.39 3.67
787 1306 1.883926 CAAGAAGGTTGGTTAACGGGG 59.116 52.381 0.00 0.00 37.69 5.73
801 1320 2.716017 CGGGGCGCTCTCTTTCTCT 61.716 63.158 7.48 0.00 0.00 3.10
802 1321 1.599576 GGGGCGCTCTCTTTCTCTT 59.400 57.895 7.48 0.00 0.00 2.85
803 1322 0.461163 GGGGCGCTCTCTTTCTCTTC 60.461 60.000 7.48 0.00 0.00 2.87
804 1323 0.461163 GGGCGCTCTCTTTCTCTTCC 60.461 60.000 7.64 0.00 0.00 3.46
805 1324 0.534873 GGCGCTCTCTTTCTCTTCCT 59.465 55.000 7.64 0.00 0.00 3.36
806 1325 1.470805 GGCGCTCTCTTTCTCTTCCTC 60.471 57.143 7.64 0.00 0.00 3.71
807 1326 1.476488 GCGCTCTCTTTCTCTTCCTCT 59.524 52.381 0.00 0.00 0.00 3.69
813 1332 5.127693 TCTCTTTCTCTTCCTCTTGTTCG 57.872 43.478 0.00 0.00 0.00 3.95
818 1337 2.030185 TCTCTTCCTCTTGTTCGGTTCG 60.030 50.000 0.00 0.00 0.00 3.95
829 1348 2.352342 TGTTCGGTTCGGTTTCTGTTTC 59.648 45.455 0.00 0.00 0.00 2.78
830 1349 2.607631 TCGGTTCGGTTTCTGTTTCT 57.392 45.000 0.00 0.00 0.00 2.52
831 1350 2.206750 TCGGTTCGGTTTCTGTTTCTG 58.793 47.619 0.00 0.00 0.00 3.02
834 1353 3.181504 CGGTTCGGTTTCTGTTTCTGTTT 60.182 43.478 0.00 0.00 0.00 2.83
835 1354 4.348656 GGTTCGGTTTCTGTTTCTGTTTC 58.651 43.478 0.00 0.00 0.00 2.78
836 1355 4.348656 GTTCGGTTTCTGTTTCTGTTTCC 58.651 43.478 0.00 0.00 0.00 3.13
838 1357 4.266714 TCGGTTTCTGTTTCTGTTTCCTT 58.733 39.130 0.00 0.00 0.00 3.36
839 1358 4.334481 TCGGTTTCTGTTTCTGTTTCCTTC 59.666 41.667 0.00 0.00 0.00 3.46
840 1359 4.335594 CGGTTTCTGTTTCTGTTTCCTTCT 59.664 41.667 0.00 0.00 0.00 2.85
841 1360 5.163652 CGGTTTCTGTTTCTGTTTCCTTCTT 60.164 40.000 0.00 0.00 0.00 2.52
842 1361 6.625081 CGGTTTCTGTTTCTGTTTCCTTCTTT 60.625 38.462 0.00 0.00 0.00 2.52
843 1362 6.752351 GGTTTCTGTTTCTGTTTCCTTCTTTC 59.248 38.462 0.00 0.00 0.00 2.62
844 1363 7.363007 GGTTTCTGTTTCTGTTTCCTTCTTTCT 60.363 37.037 0.00 0.00 0.00 2.52
845 1364 7.703058 TTCTGTTTCTGTTTCCTTCTTTCTT 57.297 32.000 0.00 0.00 0.00 2.52
846 1365 7.703058 TCTGTTTCTGTTTCCTTCTTTCTTT 57.297 32.000 0.00 0.00 0.00 2.52
847 1366 7.538575 TCTGTTTCTGTTTCCTTCTTTCTTTG 58.461 34.615 0.00 0.00 0.00 2.77
848 1367 6.099341 TGTTTCTGTTTCCTTCTTTCTTTGC 58.901 36.000 0.00 0.00 0.00 3.68
849 1368 4.918810 TCTGTTTCCTTCTTTCTTTGCC 57.081 40.909 0.00 0.00 0.00 4.52
850 1369 3.636764 TCTGTTTCCTTCTTTCTTTGCCC 59.363 43.478 0.00 0.00 0.00 5.36
851 1370 2.698274 TGTTTCCTTCTTTCTTTGCCCC 59.302 45.455 0.00 0.00 0.00 5.80
852 1371 2.965831 GTTTCCTTCTTTCTTTGCCCCT 59.034 45.455 0.00 0.00 0.00 4.79
853 1372 4.149598 GTTTCCTTCTTTCTTTGCCCCTA 58.850 43.478 0.00 0.00 0.00 3.53
854 1373 3.721087 TCCTTCTTTCTTTGCCCCTAG 57.279 47.619 0.00 0.00 0.00 3.02
855 1374 2.986728 TCCTTCTTTCTTTGCCCCTAGT 59.013 45.455 0.00 0.00 0.00 2.57
856 1375 3.009143 TCCTTCTTTCTTTGCCCCTAGTC 59.991 47.826 0.00 0.00 0.00 2.59
857 1376 3.348119 CTTCTTTCTTTGCCCCTAGTCC 58.652 50.000 0.00 0.00 0.00 3.85
858 1377 2.344592 TCTTTCTTTGCCCCTAGTCCA 58.655 47.619 0.00 0.00 0.00 4.02
859 1378 2.714250 TCTTTCTTTGCCCCTAGTCCAA 59.286 45.455 0.00 0.00 0.00 3.53
860 1379 2.879103 TTCTTTGCCCCTAGTCCAAG 57.121 50.000 0.00 0.00 0.00 3.61
861 1380 2.038863 TCTTTGCCCCTAGTCCAAGA 57.961 50.000 0.00 0.00 0.00 3.02
862 1381 1.628846 TCTTTGCCCCTAGTCCAAGAC 59.371 52.381 0.00 0.00 0.00 3.01
863 1382 0.323629 TTTGCCCCTAGTCCAAGACG 59.676 55.000 0.00 0.00 37.67 4.18
864 1383 1.550130 TTGCCCCTAGTCCAAGACGG 61.550 60.000 0.00 0.00 37.67 4.79
865 1384 2.901042 CCCCTAGTCCAAGACGGC 59.099 66.667 0.00 0.00 37.67 5.68
866 1385 2.732619 CCCCTAGTCCAAGACGGCC 61.733 68.421 0.00 0.00 37.67 6.13
867 1386 1.987855 CCCTAGTCCAAGACGGCCA 60.988 63.158 2.24 0.00 37.67 5.36
868 1387 1.517832 CCTAGTCCAAGACGGCCAG 59.482 63.158 2.24 0.00 37.67 4.85
869 1388 1.153549 CTAGTCCAAGACGGCCAGC 60.154 63.158 2.24 0.00 37.67 4.85
870 1389 2.890847 CTAGTCCAAGACGGCCAGCG 62.891 65.000 2.24 0.00 37.67 5.18
895 2651 1.912043 CTCCCCTCCCCTGCATATAAG 59.088 57.143 0.00 0.00 0.00 1.73
896 2652 0.329596 CCCCTCCCCTGCATATAAGC 59.670 60.000 0.00 0.00 0.00 3.09
905 2661 2.549064 TGCATATAAGCAGGCACGAT 57.451 45.000 0.00 0.00 40.11 3.73
906 2662 2.416747 TGCATATAAGCAGGCACGATC 58.583 47.619 0.00 0.00 40.11 3.69
907 2663 1.734465 GCATATAAGCAGGCACGATCC 59.266 52.381 0.00 0.00 0.00 3.36
908 2664 2.350522 CATATAAGCAGGCACGATCCC 58.649 52.381 0.00 0.00 0.00 3.85
909 2665 0.317160 TATAAGCAGGCACGATCCCG 59.683 55.000 0.00 0.00 42.50 5.14
910 2666 2.996168 ATAAGCAGGCACGATCCCGC 62.996 60.000 0.00 0.00 39.95 6.13
944 2723 0.573521 CAAAGCAACGCAAGCACAAG 59.426 50.000 0.00 0.00 45.62 3.16
963 2742 0.456824 GCAGCGACATCGTCTTCTCA 60.457 55.000 2.85 0.00 42.22 3.27
978 2757 6.018913 TCGTCTTCTCATCTTCACGTAGATAC 60.019 42.308 0.55 0.00 33.17 2.24
1006 2805 2.210144 TTTTCGGGGCCTGATGGAGG 62.210 60.000 17.51 0.00 46.13 4.30
1199 3016 0.687354 AAGGTCAGCTCCATGTTCGT 59.313 50.000 0.00 0.00 0.00 3.85
1213 3030 0.245539 GTTCGTCGACCCCATCTTCA 59.754 55.000 10.58 0.00 0.00 3.02
1278 3098 0.377554 CCGTCGAGTCGCAGTAGATT 59.622 55.000 7.92 0.00 0.00 2.40
1302 3122 3.774702 GTTCGTTCGCCTGCCGTC 61.775 66.667 0.00 0.00 38.35 4.79
1311 3131 3.129502 CCTGCCGTCGTCCGTCTA 61.130 66.667 0.00 0.00 33.66 2.59
1313 3133 2.046988 TGCCGTCGTCCGTCTAGA 60.047 61.111 0.00 0.00 33.66 2.43
1314 3134 1.437772 CTGCCGTCGTCCGTCTAGAT 61.438 60.000 0.00 0.00 33.66 1.98
1316 3136 1.434622 GCCGTCGTCCGTCTAGATGA 61.435 60.000 13.79 2.17 33.66 2.92
1317 3137 0.304098 CCGTCGTCCGTCTAGATGAC 59.696 60.000 13.79 13.25 45.45 3.06
1318 3138 0.304098 CGTCGTCCGTCTAGATGACC 59.696 60.000 13.79 2.50 45.93 4.02
1319 3139 1.666054 GTCGTCCGTCTAGATGACCT 58.334 55.000 13.79 0.00 43.91 3.85
1320 3140 2.800985 CGTCGTCCGTCTAGATGACCTA 60.801 54.545 13.79 2.96 45.93 3.08
1325 3145 6.255453 GTCGTCCGTCTAGATGACCTATATAC 59.745 46.154 13.79 2.99 43.91 1.47
1332 3152 6.374894 GTCTAGATGACCTATATACCGTTGCT 59.625 42.308 0.00 0.00 39.69 3.91
1367 3187 3.192633 GGATCACGGGCATTGTTTTTAGT 59.807 43.478 0.00 0.00 0.00 2.24
1380 3200 5.585820 TGTTTTTAGTTGTGGGGAACTTC 57.414 39.130 0.00 0.00 37.38 3.01
1384 3204 7.229907 TGTTTTTAGTTGTGGGGAACTTCTATC 59.770 37.037 0.00 0.00 37.38 2.08
1385 3205 5.431179 TTAGTTGTGGGGAACTTCTATCC 57.569 43.478 0.00 0.00 37.38 2.59
1386 3206 3.532102 AGTTGTGGGGAACTTCTATCCT 58.468 45.455 0.00 0.00 37.14 3.24
1387 3207 3.519913 AGTTGTGGGGAACTTCTATCCTC 59.480 47.826 0.00 0.00 37.99 3.71
1458 3291 5.843673 AGTGATTATCTCGAAGAAGAGCA 57.156 39.130 0.00 0.00 38.12 4.26
1459 3292 5.587289 AGTGATTATCTCGAAGAAGAGCAC 58.413 41.667 0.00 0.00 38.12 4.40
1460 3293 5.359576 AGTGATTATCTCGAAGAAGAGCACT 59.640 40.000 11.84 11.84 36.05 4.40
1461 3294 6.039616 GTGATTATCTCGAAGAAGAGCACTT 58.960 40.000 0.00 0.00 38.12 3.16
1462 3295 6.533367 GTGATTATCTCGAAGAAGAGCACTTT 59.467 38.462 0.00 0.00 38.12 2.66
1463 3296 7.064016 GTGATTATCTCGAAGAAGAGCACTTTT 59.936 37.037 0.00 0.00 38.12 2.27
1464 3297 7.604164 TGATTATCTCGAAGAAGAGCACTTTTT 59.396 33.333 0.00 0.00 38.12 1.94
1511 3344 9.955208 TTTGCTATATATCTTGTTTTCATGCTG 57.045 29.630 0.00 0.00 0.00 4.41
1515 3352 9.888878 CTATATATCTTGTTTTCATGCTGGTTG 57.111 33.333 0.00 0.00 0.00 3.77
1523 3360 1.456296 TCATGCTGGTTGTGATGCTC 58.544 50.000 0.00 0.00 0.00 4.26
1527 3364 1.089920 GCTGGTTGTGATGCTCGATT 58.910 50.000 0.00 0.00 0.00 3.34
1528 3365 1.470098 GCTGGTTGTGATGCTCGATTT 59.530 47.619 0.00 0.00 0.00 2.17
1538 3376 6.785191 TGTGATGCTCGATTTTAGGAATTTC 58.215 36.000 0.00 0.00 0.00 2.17
1546 3384 7.466860 GCTCGATTTTAGGAATTTCGTGGTATT 60.467 37.037 1.94 0.00 0.00 1.89
1604 3449 5.567623 GCTCCTTATATGGCTCGATTCAGAA 60.568 44.000 0.00 0.00 0.00 3.02
1650 3495 5.046288 GATCTGGATCCTTGTGAAATCCT 57.954 43.478 14.23 0.00 39.78 3.24
1651 3496 6.179906 GATCTGGATCCTTGTGAAATCCTA 57.820 41.667 14.23 0.00 39.78 2.94
1652 3497 6.581388 ATCTGGATCCTTGTGAAATCCTAA 57.419 37.500 14.23 0.00 39.78 2.69
1653 3498 5.994250 TCTGGATCCTTGTGAAATCCTAAG 58.006 41.667 14.23 0.00 39.78 2.18
1654 3499 5.488919 TCTGGATCCTTGTGAAATCCTAAGT 59.511 40.000 14.23 0.00 39.78 2.24
1655 3500 6.012508 TCTGGATCCTTGTGAAATCCTAAGTT 60.013 38.462 14.23 0.00 39.78 2.66
1656 3501 6.552008 TGGATCCTTGTGAAATCCTAAGTTT 58.448 36.000 14.23 0.00 39.78 2.66
1657 3502 7.010160 TGGATCCTTGTGAAATCCTAAGTTTT 58.990 34.615 14.23 0.00 39.78 2.43
1658 3503 7.039784 TGGATCCTTGTGAAATCCTAAGTTTTG 60.040 37.037 14.23 0.00 39.78 2.44
1665 3510 8.001881 TGTGAAATCCTAAGTTTTGCACTTTA 57.998 30.769 0.00 0.00 43.89 1.85
1693 3538 4.453480 AAGAAACTTCTCATCCACCCAA 57.547 40.909 0.00 0.00 36.28 4.12
1694 3539 4.453480 AGAAACTTCTCATCCACCCAAA 57.547 40.909 0.00 0.00 29.94 3.28
1695 3540 5.003096 AGAAACTTCTCATCCACCCAAAT 57.997 39.130 0.00 0.00 29.94 2.32
1696 3541 5.012893 AGAAACTTCTCATCCACCCAAATC 58.987 41.667 0.00 0.00 29.94 2.17
1697 3542 4.664688 AACTTCTCATCCACCCAAATCT 57.335 40.909 0.00 0.00 0.00 2.40
1698 3543 4.227864 ACTTCTCATCCACCCAAATCTC 57.772 45.455 0.00 0.00 0.00 2.75
1699 3544 3.848975 ACTTCTCATCCACCCAAATCTCT 59.151 43.478 0.00 0.00 0.00 3.10
1700 3545 4.290722 ACTTCTCATCCACCCAAATCTCTT 59.709 41.667 0.00 0.00 0.00 2.85
1701 3546 4.934797 TCTCATCCACCCAAATCTCTTT 57.065 40.909 0.00 0.00 0.00 2.52
1702 3547 6.012508 ACTTCTCATCCACCCAAATCTCTTTA 60.013 38.462 0.00 0.00 0.00 1.85
1703 3548 5.745227 TCTCATCCACCCAAATCTCTTTAC 58.255 41.667 0.00 0.00 0.00 2.01
1704 3549 5.250543 TCTCATCCACCCAAATCTCTTTACA 59.749 40.000 0.00 0.00 0.00 2.41
1705 3550 5.886609 TCATCCACCCAAATCTCTTTACAA 58.113 37.500 0.00 0.00 0.00 2.41
1706 3551 6.310941 TCATCCACCCAAATCTCTTTACAAA 58.689 36.000 0.00 0.00 0.00 2.83
1707 3552 6.953520 TCATCCACCCAAATCTCTTTACAAAT 59.046 34.615 0.00 0.00 0.00 2.32
1708 3553 6.588719 TCCACCCAAATCTCTTTACAAATG 57.411 37.500 0.00 0.00 0.00 2.32
1709 3554 6.310941 TCCACCCAAATCTCTTTACAAATGA 58.689 36.000 0.00 0.00 0.00 2.57
1710 3555 6.780031 TCCACCCAAATCTCTTTACAAATGAA 59.220 34.615 0.00 0.00 0.00 2.57
1711 3556 7.454380 TCCACCCAAATCTCTTTACAAATGAAT 59.546 33.333 0.00 0.00 0.00 2.57
1712 3557 8.096414 CCACCCAAATCTCTTTACAAATGAATT 58.904 33.333 0.00 0.00 0.00 2.17
1714 3559 7.603784 ACCCAAATCTCTTTACAAATGAATTGC 59.396 33.333 0.00 0.00 43.13 3.56
1720 3565 9.985730 ATCTCTTTACAAATGAATTGCTTTTCA 57.014 25.926 4.69 4.69 43.13 2.69
1731 3576 5.302568 TGAATTGCTTTTCATGTGGTTCTCT 59.697 36.000 0.00 0.00 30.82 3.10
1732 3577 6.489700 TGAATTGCTTTTCATGTGGTTCTCTA 59.510 34.615 0.00 0.00 30.82 2.43
1733 3578 6.899393 ATTGCTTTTCATGTGGTTCTCTAA 57.101 33.333 0.00 0.00 0.00 2.10
1734 3579 6.899393 TTGCTTTTCATGTGGTTCTCTAAT 57.101 33.333 0.00 0.00 0.00 1.73
1735 3580 7.994425 TTGCTTTTCATGTGGTTCTCTAATA 57.006 32.000 0.00 0.00 0.00 0.98
1736 3581 7.994425 TGCTTTTCATGTGGTTCTCTAATAA 57.006 32.000 0.00 0.00 0.00 1.40
1737 3582 8.579850 TGCTTTTCATGTGGTTCTCTAATAAT 57.420 30.769 0.00 0.00 0.00 1.28
1738 3583 8.677300 TGCTTTTCATGTGGTTCTCTAATAATC 58.323 33.333 0.00 0.00 0.00 1.75
1739 3584 8.131731 GCTTTTCATGTGGTTCTCTAATAATCC 58.868 37.037 0.00 0.00 0.00 3.01
1740 3585 9.401058 CTTTTCATGTGGTTCTCTAATAATCCT 57.599 33.333 0.00 0.00 0.00 3.24
1743 3588 8.783660 TCATGTGGTTCTCTAATAATCCTAGT 57.216 34.615 0.00 0.00 0.00 2.57
1744 3589 8.861086 TCATGTGGTTCTCTAATAATCCTAGTC 58.139 37.037 0.00 0.00 0.00 2.59
1745 3590 8.865090 CATGTGGTTCTCTAATAATCCTAGTCT 58.135 37.037 0.00 0.00 0.00 3.24
1746 3591 8.840200 TGTGGTTCTCTAATAATCCTAGTCTT 57.160 34.615 0.00 0.00 0.00 3.01
1747 3592 9.931698 TGTGGTTCTCTAATAATCCTAGTCTTA 57.068 33.333 0.00 0.00 0.00 2.10
1752 3597 9.947189 TTCTCTAATAATCCTAGTCTTAACCCA 57.053 33.333 0.00 0.00 0.00 4.51
1760 3605 8.849543 AATCCTAGTCTTAACCCATAGTGTTA 57.150 34.615 0.00 0.00 0.00 2.41
1774 3619 7.342799 ACCCATAGTGTTAAAAGAGGACGTATA 59.657 37.037 0.00 0.00 0.00 1.47
1776 3621 9.193133 CCATAGTGTTAAAAGAGGACGTATATG 57.807 37.037 0.00 0.00 0.00 1.78
1777 3622 9.745880 CATAGTGTTAAAAGAGGACGTATATGT 57.254 33.333 0.00 0.00 0.00 2.29
1781 3641 9.537848 GTGTTAAAAGAGGACGTATATGTTTTG 57.462 33.333 0.00 0.00 0.00 2.44
1803 3663 0.976641 AGACCTGGACAAATCGCTGA 59.023 50.000 0.00 0.00 0.00 4.26
1804 3664 1.347707 AGACCTGGACAAATCGCTGAA 59.652 47.619 0.00 0.00 0.00 3.02
1805 3665 2.151202 GACCTGGACAAATCGCTGAAA 58.849 47.619 0.00 0.00 0.00 2.69
1818 3683 1.961277 CTGAAAACGGTGCCTCGCT 60.961 57.895 0.00 0.00 0.00 4.93
1819 3684 1.507141 CTGAAAACGGTGCCTCGCTT 61.507 55.000 0.00 0.00 0.00 4.68
1829 3694 0.944311 TGCCTCGCTTGAGTTTCGTC 60.944 55.000 0.00 0.00 38.10 4.20
1831 3696 1.014564 CCTCGCTTGAGTTTCGTCCC 61.015 60.000 0.00 0.00 38.10 4.46
1832 3697 0.319555 CTCGCTTGAGTTTCGTCCCA 60.320 55.000 0.00 0.00 34.89 4.37
1833 3698 0.319555 TCGCTTGAGTTTCGTCCCAG 60.320 55.000 0.00 0.00 0.00 4.45
1834 3699 1.291877 CGCTTGAGTTTCGTCCCAGG 61.292 60.000 0.00 0.00 0.00 4.45
1835 3700 0.034896 GCTTGAGTTTCGTCCCAGGA 59.965 55.000 0.00 0.00 0.00 3.86
1837 3702 2.143925 CTTGAGTTTCGTCCCAGGAAC 58.856 52.381 0.00 0.00 0.00 3.62
1838 3703 0.395312 TGAGTTTCGTCCCAGGAACC 59.605 55.000 0.00 0.00 0.00 3.62
1839 3704 0.395312 GAGTTTCGTCCCAGGAACCA 59.605 55.000 0.00 0.00 0.00 3.67
1841 3706 1.423921 AGTTTCGTCCCAGGAACCAAT 59.576 47.619 0.00 0.00 0.00 3.16
1858 3732 7.178451 AGGAACCAATAAGAATCCAACGAAAAT 59.822 33.333 0.00 0.00 32.47 1.82
1862 3736 6.757947 CCAATAAGAATCCAACGAAAATGCAT 59.242 34.615 0.00 0.00 0.00 3.96
1868 3742 2.487762 TCCAACGAAAATGCATCACCTC 59.512 45.455 0.00 0.00 0.00 3.85
1870 3744 3.236816 CAACGAAAATGCATCACCTCAC 58.763 45.455 0.00 0.00 0.00 3.51
1872 3746 3.084039 ACGAAAATGCATCACCTCACAT 58.916 40.909 0.00 0.00 0.00 3.21
1873 3747 3.119743 ACGAAAATGCATCACCTCACATG 60.120 43.478 0.00 0.00 0.00 3.21
1884 3758 5.408880 TCACCTCACATGGTTTAACGATA 57.591 39.130 0.00 0.00 38.45 2.92
1885 3759 5.984725 TCACCTCACATGGTTTAACGATAT 58.015 37.500 0.00 0.00 38.45 1.63
1886 3760 7.114866 TCACCTCACATGGTTTAACGATATA 57.885 36.000 0.00 0.00 38.45 0.86
1887 3761 7.732025 TCACCTCACATGGTTTAACGATATAT 58.268 34.615 0.00 0.00 38.45 0.86
1888 3762 8.862085 TCACCTCACATGGTTTAACGATATATA 58.138 33.333 0.00 0.00 38.45 0.86
1904 3778 8.880991 ACGATATATAATCACTTGTAGAGGGT 57.119 34.615 0.00 0.00 0.00 4.34
1905 3779 8.740906 ACGATATATAATCACTTGTAGAGGGTG 58.259 37.037 0.00 0.00 0.00 4.61
1906 3780 7.702772 CGATATATAATCACTTGTAGAGGGTGC 59.297 40.741 0.00 0.00 0.00 5.01
1907 3781 2.789409 AATCACTTGTAGAGGGTGCC 57.211 50.000 0.00 0.00 0.00 5.01
1909 3783 1.656587 TCACTTGTAGAGGGTGCCAT 58.343 50.000 0.00 0.00 0.00 4.40
1910 3784 1.985159 TCACTTGTAGAGGGTGCCATT 59.015 47.619 0.00 0.00 0.00 3.16
1911 3785 2.086869 CACTTGTAGAGGGTGCCATTG 58.913 52.381 0.00 0.00 0.00 2.82
1912 3786 1.705186 ACTTGTAGAGGGTGCCATTGT 59.295 47.619 0.00 0.00 0.00 2.71
1913 3787 2.108250 ACTTGTAGAGGGTGCCATTGTT 59.892 45.455 0.00 0.00 0.00 2.83
1914 3788 2.969821 TGTAGAGGGTGCCATTGTTT 57.030 45.000 0.00 0.00 0.00 2.83
1917 3791 0.251787 AGAGGGTGCCATTGTTTCCC 60.252 55.000 0.00 0.00 38.50 3.97
1918 3792 0.541764 GAGGGTGCCATTGTTTCCCA 60.542 55.000 0.00 0.00 40.48 4.37
1919 3793 0.542702 AGGGTGCCATTGTTTCCCAG 60.543 55.000 0.00 0.00 40.48 4.45
1920 3794 0.541764 GGGTGCCATTGTTTCCCAGA 60.542 55.000 0.00 0.00 38.15 3.86
1921 3795 0.603065 GGTGCCATTGTTTCCCAGAC 59.397 55.000 0.00 0.00 0.00 3.51
1922 3796 1.327303 GTGCCATTGTTTCCCAGACA 58.673 50.000 0.00 0.00 0.00 3.41
1923 3797 1.686052 GTGCCATTGTTTCCCAGACAA 59.314 47.619 0.00 0.00 40.86 3.18
1924 3798 2.102252 GTGCCATTGTTTCCCAGACAAA 59.898 45.455 0.00 0.00 40.10 2.83
1925 3799 2.768527 TGCCATTGTTTCCCAGACAAAA 59.231 40.909 0.00 0.00 40.10 2.44
1926 3800 3.390639 TGCCATTGTTTCCCAGACAAAAT 59.609 39.130 0.00 0.00 40.10 1.82
1927 3801 3.747529 GCCATTGTTTCCCAGACAAAATG 59.252 43.478 0.00 0.00 40.10 2.32
1928 3802 4.317488 CCATTGTTTCCCAGACAAAATGG 58.683 43.478 0.00 0.00 40.10 3.16
1929 3803 4.040217 CCATTGTTTCCCAGACAAAATGGA 59.960 41.667 6.80 0.00 38.52 3.41
1930 3804 5.454471 CCATTGTTTCCCAGACAAAATGGAA 60.454 40.000 6.80 0.00 38.52 3.53
1931 3805 4.935352 TGTTTCCCAGACAAAATGGAAG 57.065 40.909 0.00 0.00 40.51 3.46
1932 3806 4.285863 TGTTTCCCAGACAAAATGGAAGT 58.714 39.130 0.00 0.00 40.51 3.01
1933 3807 4.340950 TGTTTCCCAGACAAAATGGAAGTC 59.659 41.667 0.00 0.00 40.51 3.01
1934 3808 3.154827 TCCCAGACAAAATGGAAGTCC 57.845 47.619 0.00 0.00 40.51 3.85
1974 3848 2.095059 CCAACAATGCTGCTTCACCTAC 60.095 50.000 0.00 0.00 0.00 3.18
2009 3883 5.378292 TCCTAACTACTCGCATCATGATC 57.622 43.478 4.86 0.25 0.00 2.92
2010 3884 4.218635 TCCTAACTACTCGCATCATGATCC 59.781 45.833 4.86 0.00 0.00 3.36
2011 3885 4.219507 CCTAACTACTCGCATCATGATCCT 59.780 45.833 4.86 0.00 0.00 3.24
2012 3886 3.932545 ACTACTCGCATCATGATCCTC 57.067 47.619 4.86 0.00 0.00 3.71
2013 3887 3.225940 ACTACTCGCATCATGATCCTCA 58.774 45.455 4.86 0.00 0.00 3.86
2014 3888 3.638627 ACTACTCGCATCATGATCCTCAA 59.361 43.478 4.86 0.00 0.00 3.02
2015 3889 3.109044 ACTCGCATCATGATCCTCAAG 57.891 47.619 4.86 2.27 0.00 3.02
2016 3890 2.224233 ACTCGCATCATGATCCTCAAGG 60.224 50.000 4.86 0.00 0.00 3.61
2017 3891 0.873054 CGCATCATGATCCTCAAGGC 59.127 55.000 4.86 3.52 34.44 4.35
2018 3892 1.812708 CGCATCATGATCCTCAAGGCA 60.813 52.381 4.86 0.00 34.44 4.75
2019 3893 2.304092 GCATCATGATCCTCAAGGCAA 58.696 47.619 4.86 0.00 34.44 4.52
2020 3894 2.293677 GCATCATGATCCTCAAGGCAAG 59.706 50.000 4.86 0.00 34.44 4.01
2021 3895 3.552875 CATCATGATCCTCAAGGCAAGT 58.447 45.455 4.86 0.00 34.44 3.16
2022 3896 4.711399 CATCATGATCCTCAAGGCAAGTA 58.289 43.478 4.86 0.00 34.44 2.24
2023 3897 4.842531 TCATGATCCTCAAGGCAAGTAA 57.157 40.909 0.00 0.00 34.44 2.24
2024 3898 5.178096 TCATGATCCTCAAGGCAAGTAAA 57.822 39.130 0.00 0.00 34.44 2.01
2025 3899 5.569355 TCATGATCCTCAAGGCAAGTAAAA 58.431 37.500 0.00 0.00 34.44 1.52
2026 3900 5.415701 TCATGATCCTCAAGGCAAGTAAAAC 59.584 40.000 0.00 0.00 34.44 2.43
2027 3901 4.724399 TGATCCTCAAGGCAAGTAAAACA 58.276 39.130 0.00 0.00 34.44 2.83
2028 3902 5.136828 TGATCCTCAAGGCAAGTAAAACAA 58.863 37.500 0.00 0.00 34.44 2.83
2029 3903 4.911514 TCCTCAAGGCAAGTAAAACAAC 57.088 40.909 0.00 0.00 34.44 3.32
2030 3904 4.532834 TCCTCAAGGCAAGTAAAACAACT 58.467 39.130 0.00 0.00 34.44 3.16
2031 3905 4.953579 TCCTCAAGGCAAGTAAAACAACTT 59.046 37.500 0.00 0.00 40.33 2.66
2032 3906 5.067283 TCCTCAAGGCAAGTAAAACAACTTC 59.933 40.000 0.00 0.00 37.61 3.01
2033 3907 5.257082 TCAAGGCAAGTAAAACAACTTCC 57.743 39.130 0.00 0.00 37.61 3.46
2034 3908 4.707448 TCAAGGCAAGTAAAACAACTTCCA 59.293 37.500 0.00 0.00 37.61 3.53
2035 3909 4.918810 AGGCAAGTAAAACAACTTCCAG 57.081 40.909 0.00 0.00 37.61 3.86
2036 3910 3.636764 AGGCAAGTAAAACAACTTCCAGG 59.363 43.478 0.00 0.00 37.61 4.45
2037 3911 3.634910 GGCAAGTAAAACAACTTCCAGGA 59.365 43.478 0.00 0.00 37.61 3.86
2038 3912 4.261614 GGCAAGTAAAACAACTTCCAGGAG 60.262 45.833 0.00 0.00 37.61 3.69
2039 3913 4.578928 GCAAGTAAAACAACTTCCAGGAGA 59.421 41.667 0.00 0.00 37.61 3.71
2040 3914 5.505819 GCAAGTAAAACAACTTCCAGGAGAC 60.506 44.000 0.00 0.00 37.61 3.36
2041 3915 4.377897 AGTAAAACAACTTCCAGGAGACG 58.622 43.478 0.00 0.00 0.00 4.18
2042 3916 3.553828 AAAACAACTTCCAGGAGACGA 57.446 42.857 0.00 0.00 0.00 4.20
2043 3917 3.553828 AAACAACTTCCAGGAGACGAA 57.446 42.857 0.00 0.00 0.00 3.85
2044 3918 3.553828 AACAACTTCCAGGAGACGAAA 57.446 42.857 0.00 0.00 0.00 3.46
2045 3919 2.835027 ACAACTTCCAGGAGACGAAAC 58.165 47.619 0.00 0.00 0.00 2.78
2046 3920 1.792949 CAACTTCCAGGAGACGAAACG 59.207 52.381 0.00 0.00 0.00 3.60
2047 3921 1.325355 ACTTCCAGGAGACGAAACGA 58.675 50.000 0.00 0.00 0.00 3.85
2048 3922 1.684983 ACTTCCAGGAGACGAAACGAA 59.315 47.619 0.00 0.00 0.00 3.85
2049 3923 2.059541 CTTCCAGGAGACGAAACGAAC 58.940 52.381 0.00 0.00 0.00 3.95
2050 3924 0.316204 TCCAGGAGACGAAACGAACC 59.684 55.000 0.00 0.00 0.00 3.62
2051 3925 0.669625 CCAGGAGACGAAACGAACCC 60.670 60.000 0.00 0.00 0.00 4.11
2052 3926 0.032952 CAGGAGACGAAACGAACCCA 59.967 55.000 0.00 0.00 0.00 4.51
2053 3927 0.317479 AGGAGACGAAACGAACCCAG 59.683 55.000 0.00 0.00 0.00 4.45
2054 3928 0.316204 GGAGACGAAACGAACCCAGA 59.684 55.000 0.00 0.00 0.00 3.86
2055 3929 1.067071 GGAGACGAAACGAACCCAGAT 60.067 52.381 0.00 0.00 0.00 2.90
2056 3930 1.993370 GAGACGAAACGAACCCAGATG 59.007 52.381 0.00 0.00 0.00 2.90
2057 3931 1.616865 AGACGAAACGAACCCAGATGA 59.383 47.619 0.00 0.00 0.00 2.92
2058 3932 2.233922 AGACGAAACGAACCCAGATGAT 59.766 45.455 0.00 0.00 0.00 2.45
2059 3933 2.603560 GACGAAACGAACCCAGATGATC 59.396 50.000 0.00 0.00 0.00 2.92
2060 3934 2.233922 ACGAAACGAACCCAGATGATCT 59.766 45.455 0.00 0.00 0.00 2.75
2061 3935 2.860735 CGAAACGAACCCAGATGATCTC 59.139 50.000 0.00 0.00 0.00 2.75
2062 3936 2.586258 AACGAACCCAGATGATCTCG 57.414 50.000 0.00 0.00 0.00 4.04
2063 3937 1.763968 ACGAACCCAGATGATCTCGA 58.236 50.000 7.83 0.00 0.00 4.04
2064 3938 1.405821 ACGAACCCAGATGATCTCGAC 59.594 52.381 7.83 0.00 0.00 4.20
2065 3939 1.405463 CGAACCCAGATGATCTCGACA 59.595 52.381 0.00 0.00 0.00 4.35
2066 3940 2.035193 CGAACCCAGATGATCTCGACAT 59.965 50.000 0.00 0.00 0.00 3.06
2067 3941 3.491619 CGAACCCAGATGATCTCGACATT 60.492 47.826 0.00 0.00 0.00 2.71
2068 3942 4.261614 CGAACCCAGATGATCTCGACATTA 60.262 45.833 0.00 0.00 0.00 1.90
2069 3943 5.601662 GAACCCAGATGATCTCGACATTAA 58.398 41.667 0.00 0.00 0.00 1.40
2070 3944 5.815233 ACCCAGATGATCTCGACATTAAT 57.185 39.130 0.00 0.00 0.00 1.40
2071 3945 6.918067 ACCCAGATGATCTCGACATTAATA 57.082 37.500 0.00 0.00 0.00 0.98
2072 3946 7.303182 ACCCAGATGATCTCGACATTAATAA 57.697 36.000 0.00 0.00 0.00 1.40
2073 3947 7.735917 ACCCAGATGATCTCGACATTAATAAA 58.264 34.615 0.00 0.00 0.00 1.40
2074 3948 7.657761 ACCCAGATGATCTCGACATTAATAAAC 59.342 37.037 0.00 0.00 0.00 2.01
2075 3949 7.148738 CCCAGATGATCTCGACATTAATAAACG 60.149 40.741 0.00 0.00 0.00 3.60
2076 3950 7.382488 CCAGATGATCTCGACATTAATAAACGT 59.618 37.037 0.00 0.00 0.00 3.99
2077 3951 8.755941 CAGATGATCTCGACATTAATAAACGTT 58.244 33.333 0.00 0.00 0.00 3.99
2078 3952 9.961265 AGATGATCTCGACATTAATAAACGTTA 57.039 29.630 0.00 0.00 0.00 3.18
2080 3954 8.057812 TGATCTCGACATTAATAAACGTTAGC 57.942 34.615 0.00 0.00 0.00 3.09
2081 3955 7.703197 TGATCTCGACATTAATAAACGTTAGCA 59.297 33.333 0.00 0.00 0.00 3.49
2082 3956 7.997107 TCTCGACATTAATAAACGTTAGCAT 57.003 32.000 0.00 0.00 0.00 3.79
2083 3957 9.687210 ATCTCGACATTAATAAACGTTAGCATA 57.313 29.630 0.00 0.00 0.00 3.14
2084 3958 9.177304 TCTCGACATTAATAAACGTTAGCATAG 57.823 33.333 0.00 0.00 0.00 2.23
2085 3959 9.177304 CTCGACATTAATAAACGTTAGCATAGA 57.823 33.333 0.00 0.00 0.00 1.98
2086 3960 9.687210 TCGACATTAATAAACGTTAGCATAGAT 57.313 29.630 0.00 0.00 0.00 1.98
2098 3972 9.680315 AACGTTAGCATAGATTTAGATACACTC 57.320 33.333 0.00 0.00 0.00 3.51
2099 3973 8.847196 ACGTTAGCATAGATTTAGATACACTCA 58.153 33.333 0.00 0.00 0.00 3.41
2100 3974 9.335891 CGTTAGCATAGATTTAGATACACTCAG 57.664 37.037 0.00 0.00 0.00 3.35
2103 3977 8.121305 AGCATAGATTTAGATACACTCAGAGG 57.879 38.462 1.53 0.00 0.00 3.69
2104 3978 7.178274 AGCATAGATTTAGATACACTCAGAGGG 59.822 40.741 0.00 0.00 0.00 4.30
2105 3979 7.039363 GCATAGATTTAGATACACTCAGAGGGT 60.039 40.741 11.01 11.01 35.11 4.34
2106 3980 6.723298 AGATTTAGATACACTCAGAGGGTG 57.277 41.667 16.28 4.48 40.19 4.61
2108 3982 6.670027 AGATTTAGATACACTCAGAGGGTGTT 59.330 38.462 16.28 2.52 44.25 3.32
2109 3983 6.681729 TTTAGATACACTCAGAGGGTGTTT 57.318 37.500 16.28 6.71 44.25 2.83
2110 3984 4.543590 AGATACACTCAGAGGGTGTTTG 57.456 45.455 16.28 0.00 44.25 2.93
2111 3985 3.904339 AGATACACTCAGAGGGTGTTTGT 59.096 43.478 16.28 5.02 44.25 2.83
2112 3986 4.348168 AGATACACTCAGAGGGTGTTTGTT 59.652 41.667 16.28 0.00 44.25 2.83
2113 3987 3.366052 ACACTCAGAGGGTGTTTGTTT 57.634 42.857 3.86 0.00 44.25 2.83
2114 3988 3.279434 ACACTCAGAGGGTGTTTGTTTC 58.721 45.455 3.86 0.00 44.25 2.78
2115 3989 2.618709 CACTCAGAGGGTGTTTGTTTCC 59.381 50.000 1.53 0.00 0.00 3.13
2116 3990 2.241176 ACTCAGAGGGTGTTTGTTTCCA 59.759 45.455 1.53 0.00 0.00 3.53
2117 3991 2.880890 CTCAGAGGGTGTTTGTTTCCAG 59.119 50.000 0.00 0.00 0.00 3.86
2118 3992 1.956477 CAGAGGGTGTTTGTTTCCAGG 59.044 52.381 0.00 0.00 0.00 4.45
2119 3993 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
2120 3994 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
2121 3995 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
2122 3996 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
2123 3997 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
2124 3998 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
2125 3999 3.317149 GGTGTTTGTTTCCAGGGACTTAC 59.683 47.826 0.00 0.00 34.60 2.34
2126 4000 4.204799 GTGTTTGTTTCCAGGGACTTACT 58.795 43.478 0.00 0.00 34.60 2.24
2127 4001 4.036380 GTGTTTGTTTCCAGGGACTTACTG 59.964 45.833 0.00 0.00 34.60 2.74
2135 4009 3.629142 CAGGGACTTACTGGTTTAGGG 57.371 52.381 0.00 0.00 34.60 3.53
2136 4010 3.178865 CAGGGACTTACTGGTTTAGGGA 58.821 50.000 0.00 0.00 34.60 4.20
2137 4011 3.055312 CAGGGACTTACTGGTTTAGGGAC 60.055 52.174 0.00 0.00 34.60 4.46
2138 4012 3.179685 GGGACTTACTGGTTTAGGGACT 58.820 50.000 0.00 0.00 46.37 3.85
2139 4013 3.586174 GGGACTTACTGGTTTAGGGACTT 59.414 47.826 0.00 0.00 41.75 3.01
2140 4014 4.779489 GGGACTTACTGGTTTAGGGACTTA 59.221 45.833 0.00 0.00 41.75 2.24
2141 4015 5.249163 GGGACTTACTGGTTTAGGGACTTAA 59.751 44.000 0.00 0.00 41.75 1.85
2142 4016 6.239973 GGGACTTACTGGTTTAGGGACTTAAA 60.240 42.308 0.00 0.00 41.75 1.52
2143 4017 7.226441 GGACTTACTGGTTTAGGGACTTAAAA 58.774 38.462 0.00 0.00 41.75 1.52
2144 4018 7.720957 GGACTTACTGGTTTAGGGACTTAAAAA 59.279 37.037 0.00 0.00 41.75 1.94
2164 4038 6.590234 AAAAAGTCATGTCCCATCTAAACC 57.410 37.500 0.00 0.00 0.00 3.27
2165 4039 4.927267 AAGTCATGTCCCATCTAAACCA 57.073 40.909 0.00 0.00 0.00 3.67
2166 4040 4.927267 AGTCATGTCCCATCTAAACCAA 57.073 40.909 0.00 0.00 0.00 3.67
2167 4041 5.255397 AGTCATGTCCCATCTAAACCAAA 57.745 39.130 0.00 0.00 0.00 3.28
2168 4042 5.010282 AGTCATGTCCCATCTAAACCAAAC 58.990 41.667 0.00 0.00 0.00 2.93
2169 4043 4.764823 GTCATGTCCCATCTAAACCAAACA 59.235 41.667 0.00 0.00 0.00 2.83
2170 4044 5.009631 TCATGTCCCATCTAAACCAAACAG 58.990 41.667 0.00 0.00 0.00 3.16
2171 4045 3.761897 TGTCCCATCTAAACCAAACAGG 58.238 45.455 0.00 0.00 45.67 4.00
2172 4046 3.396276 TGTCCCATCTAAACCAAACAGGA 59.604 43.478 0.00 0.00 41.22 3.86
2173 4047 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
2174 4048 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
2175 4049 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
2176 4050 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
2177 4051 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
2179 4053 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
2180 4054 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
2181 4055 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
2182 4056 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
2183 4057 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
2184 4058 4.695606 ACCAAACAGGAGGGACTTATAGA 58.304 43.478 0.00 0.00 41.55 1.98
2185 4059 5.289510 ACCAAACAGGAGGGACTTATAGAT 58.710 41.667 0.00 0.00 41.55 1.98
2186 4060 6.449956 ACCAAACAGGAGGGACTTATAGATA 58.550 40.000 0.00 0.00 41.55 1.98
2187 4061 6.555360 ACCAAACAGGAGGGACTTATAGATAG 59.445 42.308 0.00 0.00 41.55 2.08
2188 4062 6.014156 CCAAACAGGAGGGACTTATAGATAGG 60.014 46.154 0.00 0.00 41.55 2.57
2189 4063 5.278127 ACAGGAGGGACTTATAGATAGGG 57.722 47.826 0.00 0.00 41.55 3.53
2190 4064 4.027437 CAGGAGGGACTTATAGATAGGGC 58.973 52.174 0.00 0.00 41.55 5.19
2191 4065 3.933221 AGGAGGGACTTATAGATAGGGCT 59.067 47.826 0.00 0.00 41.55 5.19
2192 4066 4.027437 GGAGGGACTTATAGATAGGGCTG 58.973 52.174 0.00 0.00 41.55 4.85
2193 4067 4.027437 GAGGGACTTATAGATAGGGCTGG 58.973 52.174 0.00 0.00 41.55 4.85
2194 4068 3.668115 AGGGACTTATAGATAGGGCTGGA 59.332 47.826 0.00 0.00 27.25 3.86
2195 4069 3.770388 GGGACTTATAGATAGGGCTGGAC 59.230 52.174 0.00 0.00 0.00 4.02
2196 4070 3.770388 GGACTTATAGATAGGGCTGGACC 59.230 52.174 0.00 0.00 37.93 4.46
2197 4071 4.417437 GACTTATAGATAGGGCTGGACCA 58.583 47.826 0.00 0.00 42.05 4.02
2198 4072 4.827789 ACTTATAGATAGGGCTGGACCAA 58.172 43.478 0.00 0.00 42.05 3.67
2199 4073 5.224441 ACTTATAGATAGGGCTGGACCAAA 58.776 41.667 0.00 0.00 42.05 3.28
2200 4074 5.670361 ACTTATAGATAGGGCTGGACCAAAA 59.330 40.000 0.00 0.00 42.05 2.44
2201 4075 4.713792 ATAGATAGGGCTGGACCAAAAG 57.286 45.455 0.00 0.00 42.05 2.27
2202 4076 1.064389 AGATAGGGCTGGACCAAAAGC 60.064 52.381 0.00 0.00 42.05 3.51
2203 4077 1.002857 ATAGGGCTGGACCAAAAGCT 58.997 50.000 0.00 0.00 42.05 3.74
2204 4078 0.328258 TAGGGCTGGACCAAAAGCTC 59.672 55.000 0.00 0.00 42.05 4.09
2205 4079 2.335712 GGGCTGGACCAAAAGCTCG 61.336 63.158 0.00 0.00 42.05 5.03
2206 4080 1.600916 GGCTGGACCAAAAGCTCGT 60.601 57.895 0.00 0.00 39.46 4.18
2207 4081 0.321298 GGCTGGACCAAAAGCTCGTA 60.321 55.000 0.00 0.00 39.46 3.43
2208 4082 1.079503 GCTGGACCAAAAGCTCGTAG 58.920 55.000 0.00 0.00 36.47 3.51
2209 4083 1.079503 CTGGACCAAAAGCTCGTAGC 58.920 55.000 0.00 0.00 42.84 3.58
2236 4110 2.667137 GCTTAATGAGCGCTCGATAGT 58.333 47.619 30.75 16.38 42.46 2.12
2237 4111 3.053455 GCTTAATGAGCGCTCGATAGTT 58.947 45.455 30.75 20.77 42.46 2.24
2238 4112 3.120451 GCTTAATGAGCGCTCGATAGTTC 59.880 47.826 30.75 14.02 42.46 3.01
2239 4113 1.759994 AATGAGCGCTCGATAGTTCG 58.240 50.000 30.75 0.00 46.87 3.95
2240 4114 0.039978 ATGAGCGCTCGATAGTTCGG 60.040 55.000 30.75 0.00 45.53 4.30
2241 4115 2.011881 GAGCGCTCGATAGTTCGGC 61.012 63.158 23.61 0.00 45.53 5.54
2242 4116 2.026301 GCGCTCGATAGTTCGGCT 59.974 61.111 0.00 0.00 45.53 5.52
2243 4117 2.011881 GCGCTCGATAGTTCGGCTC 61.012 63.158 0.00 0.00 45.53 4.70
2244 4118 1.722852 CGCTCGATAGTTCGGCTCG 60.723 63.158 0.00 0.00 45.53 5.03
2245 4119 1.355916 GCTCGATAGTTCGGCTCGT 59.644 57.895 0.00 0.00 45.53 4.18
2246 4120 0.248539 GCTCGATAGTTCGGCTCGTT 60.249 55.000 0.00 0.00 45.53 3.85
2247 4121 1.003116 GCTCGATAGTTCGGCTCGTTA 60.003 52.381 0.00 0.00 45.53 3.18
2248 4122 2.540361 GCTCGATAGTTCGGCTCGTTAA 60.540 50.000 0.00 0.00 45.53 2.01
2249 4123 3.289911 CTCGATAGTTCGGCTCGTTAAG 58.710 50.000 0.00 0.00 45.53 1.85
2250 4124 2.540361 TCGATAGTTCGGCTCGTTAAGC 60.540 50.000 0.00 0.00 45.53 3.09
2251 4125 4.786127 TCGATAGTTCGGCTCGTTAAGCT 61.786 47.826 0.00 0.00 44.82 3.74
2252 4126 6.541400 TCGATAGTTCGGCTCGTTAAGCTC 62.541 50.000 0.00 0.00 44.82 4.09
2266 4140 4.796225 GCTCGTAGCTCGCTTCTT 57.204 55.556 0.00 0.00 38.45 2.52
2267 4141 3.920144 GCTCGTAGCTCGCTTCTTA 57.080 52.632 0.00 0.00 38.45 2.10
2268 4142 2.190325 GCTCGTAGCTCGCTTCTTAA 57.810 50.000 0.00 0.00 38.45 1.85
2269 4143 2.733517 GCTCGTAGCTCGCTTCTTAAT 58.266 47.619 0.00 0.00 38.45 1.40
2270 4144 2.469516 GCTCGTAGCTCGCTTCTTAATG 59.530 50.000 0.00 0.00 38.45 1.90
2271 4145 3.792459 GCTCGTAGCTCGCTTCTTAATGA 60.792 47.826 0.00 0.00 38.45 2.57
2272 4146 4.352039 CTCGTAGCTCGCTTCTTAATGAA 58.648 43.478 0.00 0.00 39.67 2.57
2273 4147 4.103357 TCGTAGCTCGCTTCTTAATGAAC 58.897 43.478 0.00 0.00 39.67 3.18
2274 4148 3.857665 CGTAGCTCGCTTCTTAATGAACA 59.142 43.478 0.00 0.00 0.00 3.18
2275 4149 4.027295 CGTAGCTCGCTTCTTAATGAACAG 60.027 45.833 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.533711 CTCTTGATCCCGGCCCAAT 59.466 57.895 0.00 0.00 0.00 3.16
3 4 1.696097 TTAGCTCTTGATCCCGGCCC 61.696 60.000 0.00 0.00 0.00 5.80
4 5 0.180406 TTTAGCTCTTGATCCCGGCC 59.820 55.000 0.00 0.00 0.00 6.13
5 6 2.262423 ATTTAGCTCTTGATCCCGGC 57.738 50.000 0.00 0.00 0.00 6.13
6 7 5.997746 TCAATAATTTAGCTCTTGATCCCGG 59.002 40.000 0.00 0.00 0.00 5.73
7 8 7.227512 AGTTCAATAATTTAGCTCTTGATCCCG 59.772 37.037 0.00 0.00 0.00 5.14
8 9 8.457238 AGTTCAATAATTTAGCTCTTGATCCC 57.543 34.615 0.00 0.00 0.00 3.85
9 10 9.336171 AGAGTTCAATAATTTAGCTCTTGATCC 57.664 33.333 0.00 0.00 0.00 3.36
11 12 9.896645 TCAGAGTTCAATAATTTAGCTCTTGAT 57.103 29.630 0.00 0.00 30.47 2.57
12 13 9.725019 TTCAGAGTTCAATAATTTAGCTCTTGA 57.275 29.630 0.00 0.00 30.47 3.02
13 14 9.985318 CTTCAGAGTTCAATAATTTAGCTCTTG 57.015 33.333 0.00 0.00 30.47 3.02
14 15 9.950496 TCTTCAGAGTTCAATAATTTAGCTCTT 57.050 29.630 0.00 0.00 30.47 2.85
16 17 8.324567 CGTCTTCAGAGTTCAATAATTTAGCTC 58.675 37.037 0.00 0.00 0.00 4.09
17 18 7.819900 ACGTCTTCAGAGTTCAATAATTTAGCT 59.180 33.333 0.00 0.00 0.00 3.32
19 20 9.140286 TCACGTCTTCAGAGTTCAATAATTTAG 57.860 33.333 0.00 0.00 0.00 1.85
20 21 9.483916 TTCACGTCTTCAGAGTTCAATAATTTA 57.516 29.630 0.00 0.00 0.00 1.40
22 23 7.441157 TGTTCACGTCTTCAGAGTTCAATAATT 59.559 33.333 0.00 0.00 0.00 1.40
23 24 6.929049 TGTTCACGTCTTCAGAGTTCAATAAT 59.071 34.615 0.00 0.00 0.00 1.28
26 27 4.693283 TGTTCACGTCTTCAGAGTTCAAT 58.307 39.130 0.00 0.00 0.00 2.57
27 28 4.118093 TGTTCACGTCTTCAGAGTTCAA 57.882 40.909 0.00 0.00 0.00 2.69
28 29 3.793797 TGTTCACGTCTTCAGAGTTCA 57.206 42.857 0.00 0.00 0.00 3.18
29 30 4.567159 ACTTTGTTCACGTCTTCAGAGTTC 59.433 41.667 0.00 0.00 0.00 3.01
31 32 4.113354 GACTTTGTTCACGTCTTCAGAGT 58.887 43.478 6.37 6.37 0.00 3.24
32 33 4.112634 TGACTTTGTTCACGTCTTCAGAG 58.887 43.478 0.00 0.00 0.00 3.35
36 37 5.597813 ATGATGACTTTGTTCACGTCTTC 57.402 39.130 0.00 0.00 34.38 2.87
37 38 4.150627 CGATGATGACTTTGTTCACGTCTT 59.849 41.667 0.00 0.00 0.00 3.01
38 39 3.675225 CGATGATGACTTTGTTCACGTCT 59.325 43.478 0.00 0.00 0.00 4.18
39 40 3.181530 CCGATGATGACTTTGTTCACGTC 60.182 47.826 0.00 0.00 0.00 4.34
40 41 2.736721 CCGATGATGACTTTGTTCACGT 59.263 45.455 0.00 0.00 0.00 4.49
41 42 2.993220 TCCGATGATGACTTTGTTCACG 59.007 45.455 0.00 0.00 0.00 4.35
43 44 3.002791 GCTCCGATGATGACTTTGTTCA 58.997 45.455 0.00 0.00 0.00 3.18
44 45 2.352960 GGCTCCGATGATGACTTTGTTC 59.647 50.000 0.00 0.00 0.00 3.18
45 46 2.026822 AGGCTCCGATGATGACTTTGTT 60.027 45.455 0.00 0.00 0.00 2.83
46 47 1.556911 AGGCTCCGATGATGACTTTGT 59.443 47.619 0.00 0.00 0.00 2.83
47 48 2.208431 GAGGCTCCGATGATGACTTTG 58.792 52.381 2.15 0.00 0.00 2.77
48 49 1.833630 TGAGGCTCCGATGATGACTTT 59.166 47.619 12.86 0.00 0.00 2.66
49 50 1.489481 TGAGGCTCCGATGATGACTT 58.511 50.000 12.86 0.00 0.00 3.01
50 51 1.137872 GTTGAGGCTCCGATGATGACT 59.862 52.381 12.86 0.00 0.00 3.41
51 52 1.576356 GTTGAGGCTCCGATGATGAC 58.424 55.000 12.86 0.00 0.00 3.06
53 54 0.467384 AGGTTGAGGCTCCGATGATG 59.533 55.000 12.86 0.00 0.00 3.07
54 55 1.689273 GTAGGTTGAGGCTCCGATGAT 59.311 52.381 12.86 0.00 0.00 2.45
55 56 1.112113 GTAGGTTGAGGCTCCGATGA 58.888 55.000 12.86 0.00 0.00 2.92
56 57 0.105039 GGTAGGTTGAGGCTCCGATG 59.895 60.000 12.86 0.00 0.00 3.84
57 58 1.392710 CGGTAGGTTGAGGCTCCGAT 61.393 60.000 12.86 0.00 40.29 4.18
58 59 2.050350 CGGTAGGTTGAGGCTCCGA 61.050 63.158 12.86 0.00 40.29 4.55
59 60 2.494918 CGGTAGGTTGAGGCTCCG 59.505 66.667 12.86 2.77 0.00 4.63
60 61 2.901042 CCGGTAGGTTGAGGCTCC 59.099 66.667 12.86 0.00 0.00 4.70
77 78 3.427233 GGTTTCTGTTGATGAGATGCTGC 60.427 47.826 0.00 0.00 0.00 5.25
78 79 4.008330 AGGTTTCTGTTGATGAGATGCTG 58.992 43.478 0.00 0.00 0.00 4.41
79 80 4.298103 AGGTTTCTGTTGATGAGATGCT 57.702 40.909 0.00 0.00 0.00 3.79
92 93 7.070798 GTCGATCGTTACTAGATAGGTTTCTG 58.929 42.308 15.94 0.00 0.00 3.02
107 109 2.679336 TCAAGACCATCGTCGATCGTTA 59.321 45.455 15.94 2.04 44.28 3.18
502 576 1.065701 CCTCTTCTCGATACACCGGTG 59.934 57.143 32.83 32.83 0.00 4.94
504 578 1.604755 CTCCTCTTCTCGATACACCGG 59.395 57.143 0.00 0.00 0.00 5.28
507 581 3.547746 ACCTCTCCTCTTCTCGATACAC 58.452 50.000 0.00 0.00 0.00 2.90
510 584 3.954904 CCAAACCTCTCCTCTTCTCGATA 59.045 47.826 0.00 0.00 0.00 2.92
606 681 1.808945 CTCCTCAAGAAACAAGCGCAT 59.191 47.619 11.47 0.00 0.00 4.73
663 1156 5.770663 AGCTACTTCTGTGTCTCTGTTTCTA 59.229 40.000 0.00 0.00 0.00 2.10
664 1157 4.586841 AGCTACTTCTGTGTCTCTGTTTCT 59.413 41.667 0.00 0.00 0.00 2.52
667 1160 3.257127 GGAGCTACTTCTGTGTCTCTGTT 59.743 47.826 0.00 0.00 0.00 3.16
669 1162 2.165437 GGGAGCTACTTCTGTGTCTCTG 59.835 54.545 0.00 0.00 0.00 3.35
670 1163 2.452505 GGGAGCTACTTCTGTGTCTCT 58.547 52.381 0.00 0.00 0.00 3.10
672 1165 1.178276 CGGGAGCTACTTCTGTGTCT 58.822 55.000 0.00 0.00 0.00 3.41
674 1167 1.272769 GAACGGGAGCTACTTCTGTGT 59.727 52.381 0.00 0.00 27.52 3.72
675 1168 1.404315 GGAACGGGAGCTACTTCTGTG 60.404 57.143 0.00 0.00 27.52 3.66
676 1169 0.896226 GGAACGGGAGCTACTTCTGT 59.104 55.000 0.00 0.00 28.09 3.41
677 1170 3.742983 GGAACGGGAGCTACTTCTG 57.257 57.895 0.00 0.00 0.00 3.02
698 1191 0.611896 ATTTCCTTTCCCGGGTGCAG 60.612 55.000 22.86 14.50 0.00 4.41
704 1197 1.670811 CACGATGATTTCCTTTCCCGG 59.329 52.381 0.00 0.00 0.00 5.73
705 1198 2.627945 TCACGATGATTTCCTTTCCCG 58.372 47.619 0.00 0.00 0.00 5.14
707 1200 4.820284 GGATCACGATGATTTCCTTTCC 57.180 45.455 0.00 0.00 37.20 3.13
722 1215 1.630148 CACTTCGGAGTTCGGATCAC 58.370 55.000 0.00 0.00 39.77 3.06
725 1218 1.218316 GCCACTTCGGAGTTCGGAT 59.782 57.895 4.38 0.00 39.77 4.18
752 1271 6.285329 ACCTTCTTGGATTGGATTGGATAT 57.715 37.500 0.00 0.00 39.71 1.63
776 1295 3.305177 GAGAGCGCCCCGTTAACCA 62.305 63.158 2.29 0.00 0.00 3.67
777 1296 2.510918 GAGAGCGCCCCGTTAACC 60.511 66.667 2.29 0.00 0.00 2.85
778 1297 0.672711 AAAGAGAGCGCCCCGTTAAC 60.673 55.000 2.29 0.00 0.00 2.01
779 1298 0.390735 GAAAGAGAGCGCCCCGTTAA 60.391 55.000 2.29 0.00 0.00 2.01
780 1299 1.217244 GAAAGAGAGCGCCCCGTTA 59.783 57.895 2.29 0.00 0.00 3.18
787 1306 1.476488 AGAGGAAGAGAAAGAGAGCGC 59.524 52.381 0.00 0.00 0.00 5.92
801 1320 0.754472 ACCGAACCGAACAAGAGGAA 59.246 50.000 0.00 0.00 0.00 3.36
802 1321 0.754472 AACCGAACCGAACAAGAGGA 59.246 50.000 0.00 0.00 0.00 3.71
803 1322 1.529865 GAAACCGAACCGAACAAGAGG 59.470 52.381 0.00 0.00 0.00 3.69
804 1323 2.221055 CAGAAACCGAACCGAACAAGAG 59.779 50.000 0.00 0.00 0.00 2.85
805 1324 2.206750 CAGAAACCGAACCGAACAAGA 58.793 47.619 0.00 0.00 0.00 3.02
806 1325 1.937899 ACAGAAACCGAACCGAACAAG 59.062 47.619 0.00 0.00 0.00 3.16
807 1326 2.027003 ACAGAAACCGAACCGAACAA 57.973 45.000 0.00 0.00 0.00 2.83
813 1332 4.348656 GAAACAGAAACAGAAACCGAACC 58.651 43.478 0.00 0.00 0.00 3.62
818 1337 5.836821 AGAAGGAAACAGAAACAGAAACC 57.163 39.130 0.00 0.00 0.00 3.27
829 1348 3.243873 GGGGCAAAGAAAGAAGGAAACAG 60.244 47.826 0.00 0.00 0.00 3.16
830 1349 2.698274 GGGGCAAAGAAAGAAGGAAACA 59.302 45.455 0.00 0.00 0.00 2.83
831 1350 2.965831 AGGGGCAAAGAAAGAAGGAAAC 59.034 45.455 0.00 0.00 0.00 2.78
834 1353 2.986728 ACTAGGGGCAAAGAAAGAAGGA 59.013 45.455 0.00 0.00 0.00 3.36
835 1354 3.348119 GACTAGGGGCAAAGAAAGAAGG 58.652 50.000 0.00 0.00 0.00 3.46
836 1355 3.244911 TGGACTAGGGGCAAAGAAAGAAG 60.245 47.826 0.00 0.00 0.00 2.85
838 1357 2.344592 TGGACTAGGGGCAAAGAAAGA 58.655 47.619 0.00 0.00 0.00 2.52
839 1358 2.879103 TGGACTAGGGGCAAAGAAAG 57.121 50.000 0.00 0.00 0.00 2.62
840 1359 2.714250 TCTTGGACTAGGGGCAAAGAAA 59.286 45.455 0.00 0.00 0.00 2.52
841 1360 2.039879 GTCTTGGACTAGGGGCAAAGAA 59.960 50.000 0.00 0.00 0.00 2.52
842 1361 1.628846 GTCTTGGACTAGGGGCAAAGA 59.371 52.381 0.00 0.00 0.00 2.52
843 1362 1.676014 CGTCTTGGACTAGGGGCAAAG 60.676 57.143 0.00 0.00 0.00 2.77
844 1363 0.323629 CGTCTTGGACTAGGGGCAAA 59.676 55.000 0.00 0.00 0.00 3.68
845 1364 1.550130 CCGTCTTGGACTAGGGGCAA 61.550 60.000 0.00 0.00 42.00 4.52
846 1365 1.987855 CCGTCTTGGACTAGGGGCA 60.988 63.158 0.00 0.00 42.00 5.36
847 1366 2.901042 CCGTCTTGGACTAGGGGC 59.099 66.667 0.00 0.00 42.00 5.80
848 1367 2.732619 GGCCGTCTTGGACTAGGGG 61.733 68.421 0.00 0.00 45.46 4.79
849 1368 2.901042 GGCCGTCTTGGACTAGGG 59.099 66.667 0.00 0.00 45.46 3.53
873 1392 2.719917 ATATGCAGGGGAGGGGAGGG 62.720 65.000 0.00 0.00 0.00 4.30
874 1393 0.119155 TATATGCAGGGGAGGGGAGG 59.881 60.000 0.00 0.00 0.00 4.30
875 1394 1.912043 CTTATATGCAGGGGAGGGGAG 59.088 57.143 0.00 0.00 0.00 4.30
886 1405 2.416747 GATCGTGCCTGCTTATATGCA 58.583 47.619 12.30 12.30 41.05 3.96
903 2659 4.962836 CCATGGGGCTGCGGGATC 62.963 72.222 2.85 0.00 0.00 3.36
917 2673 2.639327 GCGTTGCTTTGGAGGCCAT 61.639 57.895 5.01 0.00 31.53 4.40
923 2679 1.065600 GTGCTTGCGTTGCTTTGGA 59.934 52.632 0.00 0.00 0.00 3.53
938 2694 2.097160 CGATGTCGCTGCTTGTGC 59.903 61.111 0.00 0.00 40.20 4.57
944 2723 0.456824 TGAGAAGACGATGTCGCTGC 60.457 55.000 1.77 0.06 44.43 5.25
963 2742 6.761099 ACTTGTCTGTATCTACGTGAAGAT 57.239 37.500 0.00 1.59 39.54 2.40
978 2757 0.313987 GGCCCCGAAAAACTTGTCTG 59.686 55.000 0.00 0.00 0.00 3.51
1031 2830 4.087892 GCGCCTCCTTCTCCAGCA 62.088 66.667 0.00 0.00 0.00 4.41
1034 2833 3.393970 CCTGCGCCTCCTTCTCCA 61.394 66.667 4.18 0.00 0.00 3.86
1199 3016 2.721167 CCGCTGAAGATGGGGTCGA 61.721 63.158 0.00 0.00 33.51 4.20
1255 3075 4.813526 CTGCGACTCGACGGACGG 62.814 72.222 1.63 0.00 42.82 4.79
1256 3076 2.613814 CTACTGCGACTCGACGGACG 62.614 65.000 1.63 0.00 44.09 4.79
1257 3077 1.060622 CTACTGCGACTCGACGGAC 59.939 63.158 1.63 0.00 0.00 4.79
1278 3098 2.726912 GGCGAACGAACGACGACA 60.727 61.111 0.00 0.00 45.77 4.35
1310 3130 7.400439 AGTAGCAACGGTATATAGGTCATCTA 58.600 38.462 0.00 0.00 0.00 1.98
1311 3131 6.246919 AGTAGCAACGGTATATAGGTCATCT 58.753 40.000 0.00 0.00 0.00 2.90
1313 3133 6.912951 AAGTAGCAACGGTATATAGGTCAT 57.087 37.500 0.00 0.00 0.00 3.06
1314 3134 6.720112 AAAGTAGCAACGGTATATAGGTCA 57.280 37.500 0.00 0.00 0.00 4.02
1320 3140 9.871238 CCTCATAATAAAGTAGCAACGGTATAT 57.129 33.333 0.00 0.00 0.00 0.86
1325 3145 6.929049 TGATCCTCATAATAAAGTAGCAACGG 59.071 38.462 0.00 0.00 0.00 4.44
1332 3152 5.305902 TGCCCGTGATCCTCATAATAAAGTA 59.694 40.000 0.00 0.00 0.00 2.24
1351 3171 3.056304 CCACAACTAAAAACAATGCCCG 58.944 45.455 0.00 0.00 0.00 6.13
1356 3176 6.382859 AGAAGTTCCCCACAACTAAAAACAAT 59.617 34.615 0.00 0.00 35.45 2.71
1367 3187 3.526899 TGAGGATAGAAGTTCCCCACAA 58.473 45.455 0.00 0.00 33.45 3.33
1385 3205 5.218885 CAATATACAGCTCCTCGAGTTGAG 58.781 45.833 12.31 12.58 42.17 3.02
1386 3206 4.645136 ACAATATACAGCTCCTCGAGTTGA 59.355 41.667 12.31 1.16 42.17 3.18
1387 3207 4.742167 CACAATATACAGCTCCTCGAGTTG 59.258 45.833 12.31 7.53 44.47 3.16
1432 3265 6.754209 GCTCTTCTTCGAGATAATCACTTGAA 59.246 38.462 0.00 0.00 36.64 2.69
1485 3318 9.955208 CAGCATGAAAACAAGATATATAGCAAA 57.045 29.630 0.00 0.00 39.69 3.68
1486 3319 8.570488 CCAGCATGAAAACAAGATATATAGCAA 58.430 33.333 0.00 0.00 39.69 3.91
1487 3320 7.720957 ACCAGCATGAAAACAAGATATATAGCA 59.279 33.333 0.00 0.00 39.69 3.49
1488 3321 8.103948 ACCAGCATGAAAACAAGATATATAGC 57.896 34.615 0.00 0.00 39.69 2.97
1489 3322 9.888878 CAACCAGCATGAAAACAAGATATATAG 57.111 33.333 0.00 0.00 39.69 1.31
1490 3323 9.407380 ACAACCAGCATGAAAACAAGATATATA 57.593 29.630 0.00 0.00 39.69 0.86
1491 3324 8.192774 CACAACCAGCATGAAAACAAGATATAT 58.807 33.333 0.00 0.00 39.69 0.86
1502 3335 2.229543 GAGCATCACAACCAGCATGAAA 59.770 45.455 0.00 0.00 33.20 2.69
1504 3337 1.456296 GAGCATCACAACCAGCATGA 58.544 50.000 0.00 0.00 33.20 3.07
1509 3342 3.837213 AAAATCGAGCATCACAACCAG 57.163 42.857 0.00 0.00 33.17 4.00
1511 3344 3.938963 TCCTAAAATCGAGCATCACAACC 59.061 43.478 0.00 0.00 33.17 3.77
1515 3352 5.904080 CGAAATTCCTAAAATCGAGCATCAC 59.096 40.000 0.00 0.00 35.65 3.06
1523 3360 9.594038 CATAATACCACGAAATTCCTAAAATCG 57.406 33.333 0.00 0.00 39.30 3.34
1571 3409 7.778382 TCGAGCCATATAAGGAGCACTAATATA 59.222 37.037 0.00 0.00 0.00 0.86
1576 3414 3.763057 TCGAGCCATATAAGGAGCACTA 58.237 45.455 0.00 0.00 0.00 2.74
1578 3416 3.601443 ATCGAGCCATATAAGGAGCAC 57.399 47.619 0.00 0.00 0.00 4.40
1579 3417 3.578282 TGAATCGAGCCATATAAGGAGCA 59.422 43.478 0.00 0.00 0.00 4.26
1580 3418 4.081972 TCTGAATCGAGCCATATAAGGAGC 60.082 45.833 0.00 0.00 0.00 4.70
1583 3428 7.496529 TTTTTCTGAATCGAGCCATATAAGG 57.503 36.000 0.00 0.00 0.00 2.69
1665 3510 8.367911 GGGTGGATGAGAAGTTTCTTTTAAAAT 58.632 33.333 0.09 0.00 37.73 1.82
1678 3523 4.500499 AGAGATTTGGGTGGATGAGAAG 57.500 45.455 0.00 0.00 0.00 2.85
1690 3535 8.767478 AGCAATTCATTTGTAAAGAGATTTGG 57.233 30.769 13.19 0.00 37.65 3.28
1694 3539 9.985730 TGAAAAGCAATTCATTTGTAAAGAGAT 57.014 25.926 0.53 0.00 37.65 2.75
1695 3540 9.985730 ATGAAAAGCAATTCATTTGTAAAGAGA 57.014 25.926 10.25 0.00 45.39 3.10
1697 3542 9.545105 ACATGAAAAGCAATTCATTTGTAAAGA 57.455 25.926 12.68 0.00 45.39 2.52
1698 3543 9.588774 CACATGAAAAGCAATTCATTTGTAAAG 57.411 29.630 16.43 7.71 45.39 1.85
1699 3544 8.557864 CCACATGAAAAGCAATTCATTTGTAAA 58.442 29.630 20.12 0.00 45.39 2.01
1700 3545 7.714377 ACCACATGAAAAGCAATTCATTTGTAA 59.286 29.630 20.12 0.00 45.39 2.41
1701 3546 7.215789 ACCACATGAAAAGCAATTCATTTGTA 58.784 30.769 20.12 0.00 45.39 2.41
1702 3547 6.056884 ACCACATGAAAAGCAATTCATTTGT 58.943 32.000 20.12 13.45 45.39 2.83
1703 3548 6.548441 ACCACATGAAAAGCAATTCATTTG 57.452 33.333 17.19 17.19 45.39 2.32
1704 3549 6.993902 AGAACCACATGAAAAGCAATTCATTT 59.006 30.769 12.68 5.95 45.39 2.32
1705 3550 6.527423 AGAACCACATGAAAAGCAATTCATT 58.473 32.000 12.68 1.85 45.39 2.57
1707 3552 5.302568 AGAGAACCACATGAAAAGCAATTCA 59.697 36.000 0.00 6.65 43.03 2.57
1708 3553 5.776744 AGAGAACCACATGAAAAGCAATTC 58.223 37.500 0.00 0.00 0.00 2.17
1709 3554 5.796424 AGAGAACCACATGAAAAGCAATT 57.204 34.783 0.00 0.00 0.00 2.32
1710 3555 6.899393 TTAGAGAACCACATGAAAAGCAAT 57.101 33.333 0.00 0.00 0.00 3.56
1711 3556 6.899393 ATTAGAGAACCACATGAAAAGCAA 57.101 33.333 0.00 0.00 0.00 3.91
1712 3557 7.994425 TTATTAGAGAACCACATGAAAAGCA 57.006 32.000 0.00 0.00 0.00 3.91
1714 3559 9.401058 AGGATTATTAGAGAACCACATGAAAAG 57.599 33.333 0.00 0.00 0.00 2.27
1720 3565 9.440761 AAGACTAGGATTATTAGAGAACCACAT 57.559 33.333 0.00 0.00 0.00 3.21
1732 3577 9.448587 ACACTATGGGTTAAGACTAGGATTATT 57.551 33.333 0.00 0.00 0.00 1.40
1733 3578 9.448587 AACACTATGGGTTAAGACTAGGATTAT 57.551 33.333 0.00 0.00 0.00 1.28
1734 3579 8.849543 AACACTATGGGTTAAGACTAGGATTA 57.150 34.615 0.00 0.00 0.00 1.75
1735 3580 7.750947 AACACTATGGGTTAAGACTAGGATT 57.249 36.000 0.00 0.00 0.00 3.01
1736 3581 8.849543 TTAACACTATGGGTTAAGACTAGGAT 57.150 34.615 1.52 0.00 36.19 3.24
1737 3582 8.669055 TTTAACACTATGGGTTAAGACTAGGA 57.331 34.615 5.48 0.00 40.59 2.94
1738 3583 9.379791 CTTTTAACACTATGGGTTAAGACTAGG 57.620 37.037 5.48 0.00 40.59 3.02
1741 3586 8.101419 CCTCTTTTAACACTATGGGTTAAGACT 58.899 37.037 5.48 0.00 40.59 3.24
1742 3587 8.098912 TCCTCTTTTAACACTATGGGTTAAGAC 58.901 37.037 5.48 0.00 40.59 3.01
1743 3588 8.098912 GTCCTCTTTTAACACTATGGGTTAAGA 58.901 37.037 5.48 2.62 40.59 2.10
1744 3589 7.064253 CGTCCTCTTTTAACACTATGGGTTAAG 59.936 40.741 5.48 0.00 40.59 1.85
1745 3590 6.875195 CGTCCTCTTTTAACACTATGGGTTAA 59.125 38.462 1.52 1.52 38.54 2.01
1746 3591 6.014327 ACGTCCTCTTTTAACACTATGGGTTA 60.014 38.462 0.00 0.00 0.00 2.85
1747 3592 5.221783 ACGTCCTCTTTTAACACTATGGGTT 60.222 40.000 0.00 0.00 0.00 4.11
1748 3593 4.285260 ACGTCCTCTTTTAACACTATGGGT 59.715 41.667 0.00 0.00 0.00 4.51
1749 3594 4.828829 ACGTCCTCTTTTAACACTATGGG 58.171 43.478 0.00 0.00 0.00 4.00
1750 3595 9.193133 CATATACGTCCTCTTTTAACACTATGG 57.807 37.037 0.00 0.00 0.00 2.74
1751 3596 9.745880 ACATATACGTCCTCTTTTAACACTATG 57.254 33.333 0.00 0.00 0.00 2.23
1760 3605 5.708230 TGGCAAAACATATACGTCCTCTTTT 59.292 36.000 0.00 0.00 0.00 2.27
1791 3651 2.307049 CACCGTTTTCAGCGATTTGTC 58.693 47.619 0.00 0.00 0.00 3.18
1792 3652 1.599419 GCACCGTTTTCAGCGATTTGT 60.599 47.619 0.00 0.00 0.00 2.83
1793 3653 1.052287 GCACCGTTTTCAGCGATTTG 58.948 50.000 0.00 0.00 0.00 2.32
1797 3657 1.959226 GAGGCACCGTTTTCAGCGA 60.959 57.895 0.00 0.00 0.00 4.93
1798 3658 2.556287 GAGGCACCGTTTTCAGCG 59.444 61.111 0.00 0.00 0.00 5.18
1799 3659 2.556287 CGAGGCACCGTTTTCAGC 59.444 61.111 0.00 0.00 0.00 4.26
1800 3660 1.507141 AAGCGAGGCACCGTTTTCAG 61.507 55.000 0.00 0.00 28.84 3.02
1803 3663 1.507141 CTCAAGCGAGGCACCGTTTT 61.507 55.000 0.00 0.00 35.44 2.43
1804 3664 1.961277 CTCAAGCGAGGCACCGTTT 60.961 57.895 0.00 0.00 35.44 3.60
1805 3665 2.357517 CTCAAGCGAGGCACCGTT 60.358 61.111 0.00 0.00 35.44 4.44
1818 3683 1.202722 GGTTCCTGGGACGAAACTCAA 60.203 52.381 0.00 0.00 0.00 3.02
1819 3684 0.395312 GGTTCCTGGGACGAAACTCA 59.605 55.000 0.00 0.00 0.00 3.41
1829 3694 4.249638 TGGATTCTTATTGGTTCCTGGG 57.750 45.455 0.00 0.00 0.00 4.45
1831 3696 4.941263 TCGTTGGATTCTTATTGGTTCCTG 59.059 41.667 0.00 0.00 0.00 3.86
1832 3697 5.174037 TCGTTGGATTCTTATTGGTTCCT 57.826 39.130 0.00 0.00 0.00 3.36
1833 3698 5.890424 TTCGTTGGATTCTTATTGGTTCC 57.110 39.130 0.00 0.00 0.00 3.62
1834 3699 7.201435 GCATTTTCGTTGGATTCTTATTGGTTC 60.201 37.037 0.00 0.00 0.00 3.62
1835 3700 6.589907 GCATTTTCGTTGGATTCTTATTGGTT 59.410 34.615 0.00 0.00 0.00 3.67
1837 3702 6.098679 TGCATTTTCGTTGGATTCTTATTGG 58.901 36.000 0.00 0.00 0.00 3.16
1838 3703 7.488792 TGATGCATTTTCGTTGGATTCTTATTG 59.511 33.333 0.00 0.00 0.00 1.90
1839 3704 7.489113 GTGATGCATTTTCGTTGGATTCTTATT 59.511 33.333 0.00 0.00 0.00 1.40
1841 3706 6.321717 GTGATGCATTTTCGTTGGATTCTTA 58.678 36.000 0.00 0.00 0.00 2.10
1858 3732 2.291209 AAACCATGTGAGGTGATGCA 57.709 45.000 0.00 0.00 42.25 3.96
1862 3736 3.755112 TCGTTAAACCATGTGAGGTGA 57.245 42.857 0.00 0.00 42.25 4.02
1884 3758 5.606749 TGGCACCCTCTACAAGTGATTATAT 59.393 40.000 0.00 0.00 33.21 0.86
1885 3759 4.966168 TGGCACCCTCTACAAGTGATTATA 59.034 41.667 0.00 0.00 33.21 0.98
1886 3760 3.780294 TGGCACCCTCTACAAGTGATTAT 59.220 43.478 0.00 0.00 33.21 1.28
1887 3761 3.178046 TGGCACCCTCTACAAGTGATTA 58.822 45.455 0.00 0.00 33.21 1.75
1888 3762 1.985159 TGGCACCCTCTACAAGTGATT 59.015 47.619 0.00 0.00 33.21 2.57
1900 3774 0.542702 CTGGGAAACAATGGCACCCT 60.543 55.000 9.70 0.00 40.98 4.34
1902 3776 0.603065 GTCTGGGAAACAATGGCACC 59.397 55.000 0.00 0.00 0.00 5.01
1903 3777 1.327303 TGTCTGGGAAACAATGGCAC 58.673 50.000 0.00 0.00 0.00 5.01
1904 3778 2.079170 TTGTCTGGGAAACAATGGCA 57.921 45.000 0.00 0.00 31.90 4.92
1905 3779 3.467374 TTTTGTCTGGGAAACAATGGC 57.533 42.857 0.00 0.00 36.57 4.40
1906 3780 4.040217 TCCATTTTGTCTGGGAAACAATGG 59.960 41.667 8.53 8.53 37.79 3.16
1907 3781 5.212532 TCCATTTTGTCTGGGAAACAATG 57.787 39.130 0.00 0.00 36.57 2.82
1909 3783 4.714308 ACTTCCATTTTGTCTGGGAAACAA 59.286 37.500 0.00 0.00 38.83 2.83
1910 3784 4.285863 ACTTCCATTTTGTCTGGGAAACA 58.714 39.130 0.00 0.00 38.83 2.83
1911 3785 4.262036 GGACTTCCATTTTGTCTGGGAAAC 60.262 45.833 0.00 0.00 38.83 2.78
1912 3786 3.895041 GGACTTCCATTTTGTCTGGGAAA 59.105 43.478 0.00 0.00 38.83 3.13
1913 3787 3.117322 TGGACTTCCATTTTGTCTGGGAA 60.117 43.478 0.00 0.00 42.01 3.97
1914 3788 2.445145 TGGACTTCCATTTTGTCTGGGA 59.555 45.455 0.00 0.00 42.01 4.37
1926 3800 4.394729 GACCTTACAATTGTGGACTTCCA 58.605 43.478 21.42 0.00 45.30 3.53
1927 3801 3.435671 CGACCTTACAATTGTGGACTTCC 59.564 47.826 21.42 3.71 0.00 3.46
1928 3802 4.062991 ACGACCTTACAATTGTGGACTTC 58.937 43.478 21.42 9.57 0.00 3.01
1929 3803 4.062991 GACGACCTTACAATTGTGGACTT 58.937 43.478 21.42 8.51 0.00 3.01
1930 3804 3.556423 GGACGACCTTACAATTGTGGACT 60.556 47.826 21.42 0.00 0.00 3.85
1931 3805 2.740447 GGACGACCTTACAATTGTGGAC 59.260 50.000 21.42 13.27 0.00 4.02
1932 3806 2.289819 GGGACGACCTTACAATTGTGGA 60.290 50.000 21.42 8.65 35.85 4.02
1933 3807 2.081462 GGGACGACCTTACAATTGTGG 58.919 52.381 21.42 16.42 35.85 4.17
1934 3808 2.081462 GGGGACGACCTTACAATTGTG 58.919 52.381 21.42 7.09 40.03 3.33
1935 3809 1.700739 TGGGGACGACCTTACAATTGT 59.299 47.619 16.68 16.68 40.03 2.71
1942 3816 1.612199 GCATTGTTGGGGACGACCTTA 60.612 52.381 3.44 0.00 44.73 2.69
1974 3848 6.348213 CGAGTAGTTAGGATTTGGTTTTGTGG 60.348 42.308 0.00 0.00 0.00 4.17
2009 3883 4.918810 AGTTGTTTTACTTGCCTTGAGG 57.081 40.909 0.00 0.00 38.53 3.86
2010 3884 5.163561 TGGAAGTTGTTTTACTTGCCTTGAG 60.164 40.000 5.72 0.00 43.40 3.02
2011 3885 4.707448 TGGAAGTTGTTTTACTTGCCTTGA 59.293 37.500 5.72 0.00 43.40 3.02
2012 3886 5.004922 TGGAAGTTGTTTTACTTGCCTTG 57.995 39.130 5.72 0.00 43.40 3.61
2013 3887 4.099419 CCTGGAAGTTGTTTTACTTGCCTT 59.901 41.667 5.72 0.00 43.40 4.35
2014 3888 3.636764 CCTGGAAGTTGTTTTACTTGCCT 59.363 43.478 5.72 0.00 43.40 4.75
2015 3889 3.634910 TCCTGGAAGTTGTTTTACTTGCC 59.365 43.478 0.00 3.02 43.40 4.52
2016 3890 4.578928 TCTCCTGGAAGTTGTTTTACTTGC 59.421 41.667 0.00 0.00 44.04 4.01
2017 3891 5.277345 CGTCTCCTGGAAGTTGTTTTACTTG 60.277 44.000 0.00 0.00 38.43 3.16
2018 3892 4.814771 CGTCTCCTGGAAGTTGTTTTACTT 59.185 41.667 0.00 0.00 40.92 2.24
2019 3893 4.100498 TCGTCTCCTGGAAGTTGTTTTACT 59.900 41.667 0.00 0.00 0.00 2.24
2020 3894 4.374399 TCGTCTCCTGGAAGTTGTTTTAC 58.626 43.478 0.00 0.00 0.00 2.01
2021 3895 4.675976 TCGTCTCCTGGAAGTTGTTTTA 57.324 40.909 0.00 0.00 0.00 1.52
2022 3896 3.553828 TCGTCTCCTGGAAGTTGTTTT 57.446 42.857 0.00 0.00 0.00 2.43
2023 3897 3.553828 TTCGTCTCCTGGAAGTTGTTT 57.446 42.857 0.00 0.00 0.00 2.83
2024 3898 3.203716 GTTTCGTCTCCTGGAAGTTGTT 58.796 45.455 0.00 0.00 0.00 2.83
2025 3899 2.802057 CGTTTCGTCTCCTGGAAGTTGT 60.802 50.000 0.00 0.00 0.00 3.32
2026 3900 1.792949 CGTTTCGTCTCCTGGAAGTTG 59.207 52.381 0.00 0.00 0.00 3.16
2027 3901 1.684983 TCGTTTCGTCTCCTGGAAGTT 59.315 47.619 0.00 0.00 0.00 2.66
2028 3902 1.325355 TCGTTTCGTCTCCTGGAAGT 58.675 50.000 0.00 0.00 0.00 3.01
2029 3903 2.059541 GTTCGTTTCGTCTCCTGGAAG 58.940 52.381 0.00 0.00 0.00 3.46
2030 3904 1.269936 GGTTCGTTTCGTCTCCTGGAA 60.270 52.381 0.00 0.00 0.00 3.53
2031 3905 0.316204 GGTTCGTTTCGTCTCCTGGA 59.684 55.000 0.00 0.00 0.00 3.86
2032 3906 0.669625 GGGTTCGTTTCGTCTCCTGG 60.670 60.000 0.00 0.00 0.00 4.45
2033 3907 0.032952 TGGGTTCGTTTCGTCTCCTG 59.967 55.000 0.00 0.00 0.00 3.86
2034 3908 0.317479 CTGGGTTCGTTTCGTCTCCT 59.683 55.000 0.00 0.00 0.00 3.69
2035 3909 0.316204 TCTGGGTTCGTTTCGTCTCC 59.684 55.000 0.00 0.00 0.00 3.71
2036 3910 1.993370 CATCTGGGTTCGTTTCGTCTC 59.007 52.381 0.00 0.00 0.00 3.36
2037 3911 1.616865 TCATCTGGGTTCGTTTCGTCT 59.383 47.619 0.00 0.00 0.00 4.18
2038 3912 2.074547 TCATCTGGGTTCGTTTCGTC 57.925 50.000 0.00 0.00 0.00 4.20
2039 3913 2.233922 AGATCATCTGGGTTCGTTTCGT 59.766 45.455 0.00 0.00 0.00 3.85
2040 3914 2.860735 GAGATCATCTGGGTTCGTTTCG 59.139 50.000 0.00 0.00 0.00 3.46
2041 3915 2.860735 CGAGATCATCTGGGTTCGTTTC 59.139 50.000 0.00 0.00 0.00 2.78
2042 3916 2.496070 TCGAGATCATCTGGGTTCGTTT 59.504 45.455 0.00 0.00 0.00 3.60
2043 3917 2.100197 TCGAGATCATCTGGGTTCGTT 58.900 47.619 0.00 0.00 0.00 3.85
2044 3918 1.405821 GTCGAGATCATCTGGGTTCGT 59.594 52.381 0.00 0.00 0.00 3.85
2045 3919 1.405463 TGTCGAGATCATCTGGGTTCG 59.595 52.381 0.00 0.00 0.00 3.95
2046 3920 3.742433 ATGTCGAGATCATCTGGGTTC 57.258 47.619 0.00 0.00 0.00 3.62
2047 3921 5.614324 TTAATGTCGAGATCATCTGGGTT 57.386 39.130 0.00 0.00 0.00 4.11
2048 3922 5.815233 ATTAATGTCGAGATCATCTGGGT 57.185 39.130 0.00 0.00 0.00 4.51
2049 3923 7.148738 CGTTTATTAATGTCGAGATCATCTGGG 60.149 40.741 0.00 0.00 0.00 4.45
2050 3924 7.382488 ACGTTTATTAATGTCGAGATCATCTGG 59.618 37.037 0.00 0.00 0.00 3.86
2051 3925 8.286996 ACGTTTATTAATGTCGAGATCATCTG 57.713 34.615 0.00 0.00 0.00 2.90
2052 3926 8.873215 AACGTTTATTAATGTCGAGATCATCT 57.127 30.769 0.00 0.00 32.35 2.90
2054 3928 8.700644 GCTAACGTTTATTAATGTCGAGATCAT 58.299 33.333 5.91 0.00 32.35 2.45
2055 3929 7.703197 TGCTAACGTTTATTAATGTCGAGATCA 59.297 33.333 5.91 0.00 32.35 2.92
2056 3930 8.057812 TGCTAACGTTTATTAATGTCGAGATC 57.942 34.615 5.91 0.00 32.35 2.75
2057 3931 7.997107 TGCTAACGTTTATTAATGTCGAGAT 57.003 32.000 5.91 0.00 32.35 2.75
2058 3932 7.997107 ATGCTAACGTTTATTAATGTCGAGA 57.003 32.000 5.91 0.00 32.35 4.04
2059 3933 9.177304 TCTATGCTAACGTTTATTAATGTCGAG 57.823 33.333 5.91 0.00 32.35 4.04
2060 3934 9.687210 ATCTATGCTAACGTTTATTAATGTCGA 57.313 29.630 5.91 0.00 32.35 4.20
2072 3946 9.680315 GAGTGTATCTAAATCTATGCTAACGTT 57.320 33.333 5.88 5.88 0.00 3.99
2073 3947 8.847196 TGAGTGTATCTAAATCTATGCTAACGT 58.153 33.333 0.00 0.00 0.00 3.99
2074 3948 9.335891 CTGAGTGTATCTAAATCTATGCTAACG 57.664 37.037 0.00 0.00 0.00 3.18
2077 3951 9.237187 CCTCTGAGTGTATCTAAATCTATGCTA 57.763 37.037 3.66 0.00 0.00 3.49
2078 3952 7.178274 CCCTCTGAGTGTATCTAAATCTATGCT 59.822 40.741 3.66 0.00 0.00 3.79
2079 3953 7.039363 ACCCTCTGAGTGTATCTAAATCTATGC 60.039 40.741 3.66 0.00 0.00 3.14
2080 3954 8.303156 CACCCTCTGAGTGTATCTAAATCTATG 58.697 40.741 3.66 0.00 0.00 2.23
2081 3955 8.007742 ACACCCTCTGAGTGTATCTAAATCTAT 58.992 37.037 3.66 0.00 46.37 1.98
2082 3956 7.355101 ACACCCTCTGAGTGTATCTAAATCTA 58.645 38.462 3.66 0.00 46.37 1.98
2083 3957 6.198639 ACACCCTCTGAGTGTATCTAAATCT 58.801 40.000 3.66 0.00 46.37 2.40
2084 3958 6.472686 ACACCCTCTGAGTGTATCTAAATC 57.527 41.667 3.66 0.00 46.37 2.17
2090 3964 9.999040 TGGAAACAAACACCCTCTGAGTGTATC 62.999 44.444 3.66 0.00 41.75 2.24
2091 3965 8.330617 TGGAAACAAACACCCTCTGAGTGTAT 62.331 42.308 3.66 0.00 41.75 2.29
2092 3966 7.097017 TGGAAACAAACACCCTCTGAGTGTA 62.097 44.000 3.66 0.00 41.75 2.90
2093 3967 6.396762 TGGAAACAAACACCCTCTGAGTGT 62.397 45.833 3.66 0.31 42.86 3.55
2094 3968 2.618709 GGAAACAAACACCCTCTGAGTG 59.381 50.000 3.66 0.00 41.15 3.51
2095 3969 2.241176 TGGAAACAAACACCCTCTGAGT 59.759 45.455 3.66 0.00 37.44 3.41
2096 3970 2.880890 CTGGAAACAAACACCCTCTGAG 59.119 50.000 0.00 0.00 42.06 3.35
2097 3971 2.422803 CCTGGAAACAAACACCCTCTGA 60.423 50.000 0.00 0.00 42.06 3.27
2098 3972 1.956477 CCTGGAAACAAACACCCTCTG 59.044 52.381 0.00 0.00 42.06 3.35
2099 3973 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
2100 3974 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
2101 3975 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
2102 3976 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
2103 3977 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
2104 3978 4.036380 CAGTAAGTCCCTGGAAACAAACAC 59.964 45.833 0.00 0.00 42.06 3.32
2105 3979 4.204012 CAGTAAGTCCCTGGAAACAAACA 58.796 43.478 0.00 0.00 42.06 2.83
2106 3980 4.830826 CAGTAAGTCCCTGGAAACAAAC 57.169 45.455 0.00 0.00 42.06 2.93
2115 3989 3.055312 GTCCCTAAACCAGTAAGTCCCTG 60.055 52.174 0.00 0.00 0.00 4.45
2116 3990 3.179685 GTCCCTAAACCAGTAAGTCCCT 58.820 50.000 0.00 0.00 0.00 4.20
2117 3991 3.179685 AGTCCCTAAACCAGTAAGTCCC 58.820 50.000 0.00 0.00 0.00 4.46
2118 3992 4.904895 AAGTCCCTAAACCAGTAAGTCC 57.095 45.455 0.00 0.00 0.00 3.85
2119 3993 8.681486 TTTTTAAGTCCCTAAACCAGTAAGTC 57.319 34.615 0.00 0.00 0.00 3.01
2147 4021 8.172223 TCCTGTTTGGTTTAGATGGGACATGA 62.172 42.308 0.00 0.00 39.47 3.07
2148 4022 6.039519 TCCTGTTTGGTTTAGATGGGACATG 61.040 44.000 0.00 0.00 39.47 3.21
2149 4023 4.044065 TCCTGTTTGGTTTAGATGGGACAT 59.956 41.667 0.00 0.00 39.47 3.06
2150 4024 3.396276 TCCTGTTTGGTTTAGATGGGACA 59.604 43.478 0.00 0.00 39.32 4.02
2151 4025 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
2152 4026 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
2153 4027 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
2154 4028 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
2155 4029 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
2156 4030 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
2157 4031 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
2158 4032 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
2159 4033 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
2160 4034 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
2161 4035 5.098663 TCTATAAGTCCCTCCTGTTTGGTT 58.901 41.667 0.00 0.00 37.07 3.67
2162 4036 4.695606 TCTATAAGTCCCTCCTGTTTGGT 58.304 43.478 0.00 0.00 37.07 3.67
2163 4037 5.896073 ATCTATAAGTCCCTCCTGTTTGG 57.104 43.478 0.00 0.00 37.10 3.28
2164 4038 6.014156 CCCTATCTATAAGTCCCTCCTGTTTG 60.014 46.154 0.00 0.00 0.00 2.93
2165 4039 6.085416 CCCTATCTATAAGTCCCTCCTGTTT 58.915 44.000 0.00 0.00 0.00 2.83
2166 4040 5.656420 CCCTATCTATAAGTCCCTCCTGTT 58.344 45.833 0.00 0.00 0.00 3.16
2167 4041 4.511294 GCCCTATCTATAAGTCCCTCCTGT 60.511 50.000 0.00 0.00 0.00 4.00
2168 4042 4.027437 GCCCTATCTATAAGTCCCTCCTG 58.973 52.174 0.00 0.00 0.00 3.86
2169 4043 3.933221 AGCCCTATCTATAAGTCCCTCCT 59.067 47.826 0.00 0.00 0.00 3.69
2170 4044 4.027437 CAGCCCTATCTATAAGTCCCTCC 58.973 52.174 0.00 0.00 0.00 4.30
2171 4045 4.027437 CCAGCCCTATCTATAAGTCCCTC 58.973 52.174 0.00 0.00 0.00 4.30
2172 4046 3.668115 TCCAGCCCTATCTATAAGTCCCT 59.332 47.826 0.00 0.00 0.00 4.20
2173 4047 3.770388 GTCCAGCCCTATCTATAAGTCCC 59.230 52.174 0.00 0.00 0.00 4.46
2174 4048 3.770388 GGTCCAGCCCTATCTATAAGTCC 59.230 52.174 0.00 0.00 0.00 3.85
2175 4049 4.417437 TGGTCCAGCCCTATCTATAAGTC 58.583 47.826 0.00 0.00 36.04 3.01
2176 4050 4.487282 TGGTCCAGCCCTATCTATAAGT 57.513 45.455 0.00 0.00 36.04 2.24
2177 4051 5.825593 TTTGGTCCAGCCCTATCTATAAG 57.174 43.478 0.00 0.00 36.04 1.73
2178 4052 5.456186 GCTTTTGGTCCAGCCCTATCTATAA 60.456 44.000 0.00 0.00 36.04 0.98
2179 4053 4.041691 GCTTTTGGTCCAGCCCTATCTATA 59.958 45.833 0.00 0.00 36.04 1.31
2180 4054 3.181439 GCTTTTGGTCCAGCCCTATCTAT 60.181 47.826 0.00 0.00 36.04 1.98
2181 4055 2.172717 GCTTTTGGTCCAGCCCTATCTA 59.827 50.000 0.00 0.00 36.04 1.98
2182 4056 1.064389 GCTTTTGGTCCAGCCCTATCT 60.064 52.381 0.00 0.00 36.04 1.98
2183 4057 1.064389 AGCTTTTGGTCCAGCCCTATC 60.064 52.381 0.00 0.00 36.62 2.08
2184 4058 1.002857 AGCTTTTGGTCCAGCCCTAT 58.997 50.000 0.00 0.00 36.62 2.57
2185 4059 0.328258 GAGCTTTTGGTCCAGCCCTA 59.672 55.000 0.00 0.00 40.79 3.53
2186 4060 1.075659 GAGCTTTTGGTCCAGCCCT 59.924 57.895 0.00 0.00 40.79 5.19
2187 4061 2.335712 CGAGCTTTTGGTCCAGCCC 61.336 63.158 0.00 0.00 43.49 5.19
2188 4062 0.321298 TACGAGCTTTTGGTCCAGCC 60.321 55.000 0.00 0.00 43.49 4.85
2189 4063 1.079503 CTACGAGCTTTTGGTCCAGC 58.920 55.000 0.00 0.00 43.49 4.85
2190 4064 1.079503 GCTACGAGCTTTTGGTCCAG 58.920 55.000 0.00 0.00 43.49 3.86
2191 4065 3.226884 GCTACGAGCTTTTGGTCCA 57.773 52.632 0.00 0.00 43.49 4.02
2217 4091 4.877270 GAACTATCGAGCGCTCATTAAG 57.123 45.455 34.69 25.78 0.00 1.85
2228 4102 4.385121 GCTTAACGAGCCGAACTATCGAG 61.385 52.174 0.00 0.00 46.18 4.04
2229 4103 2.540361 GCTTAACGAGCCGAACTATCGA 60.540 50.000 0.00 0.00 46.18 3.59
2230 4104 1.779724 GCTTAACGAGCCGAACTATCG 59.220 52.381 1.50 0.00 46.01 2.92
2249 4123 2.190325 TTAAGAAGCGAGCTACGAGC 57.810 50.000 9.32 2.75 45.77 5.03
2250 4124 3.953766 TCATTAAGAAGCGAGCTACGAG 58.046 45.455 9.32 0.00 45.77 4.18
2251 4125 4.103357 GTTCATTAAGAAGCGAGCTACGA 58.897 43.478 9.32 0.00 44.44 3.43
2252 4126 3.857665 TGTTCATTAAGAAGCGAGCTACG 59.142 43.478 0.00 0.00 45.66 3.51
2253 4127 5.382573 CTGTTCATTAAGAAGCGAGCTAC 57.617 43.478 0.00 0.00 36.78 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.