Multiple sequence alignment - TraesCS4A01G369900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G369900 chr4A 100.000 2561 0 0 1 2561 641587615 641590175 0.000000e+00 4730.0
1 TraesCS4A01G369900 chr4A 80.218 733 103 24 995 1702 641576696 641577411 1.760000e-141 512.0
2 TraesCS4A01G369900 chr4A 89.744 117 4 3 2343 2451 563514750 563514634 2.660000e-30 143.0
3 TraesCS4A01G369900 chr5D 86.887 816 75 17 964 1759 530442363 530441560 0.000000e+00 885.0
4 TraesCS4A01G369900 chr5D 79.678 807 109 32 906 1675 530491847 530491059 4.850000e-147 531.0
5 TraesCS4A01G369900 chr5D 81.933 631 79 15 917 1516 530439048 530438422 3.800000e-138 501.0
6 TraesCS4A01G369900 chr5D 87.342 237 16 10 467 695 230372977 230372747 2.530000e-65 259.0
7 TraesCS4A01G369900 chr5D 79.487 234 30 5 17 249 530442743 530442527 1.590000e-32 150.0
8 TraesCS4A01G369900 chr5D 86.400 125 12 5 767 889 432985922 432986043 5.750000e-27 132.0
9 TraesCS4A01G369900 chr2D 84.116 724 92 11 959 1666 131388522 131389238 0.000000e+00 678.0
10 TraesCS4A01G369900 chr2D 84.337 249 29 7 455 697 543814121 543814365 4.260000e-58 235.0
11 TraesCS4A01G369900 chr2B 84.682 581 69 14 980 1542 185793945 185794523 1.720000e-156 562.0
12 TraesCS4A01G369900 chr2B 94.118 102 6 0 348 449 52463334 52463233 3.410000e-34 156.0
13 TraesCS4A01G369900 chr2B 92.381 105 7 1 344 448 371166205 371166308 5.710000e-32 148.0
14 TraesCS4A01G369900 chr2B 91.379 58 3 2 10 65 185792448 185792505 7.600000e-11 78.7
15 TraesCS4A01G369900 chr5B 83.859 539 65 5 995 1511 669688185 669687647 6.370000e-136 494.0
16 TraesCS4A01G369900 chr5B 85.185 486 67 3 995 1476 669690557 669690073 6.370000e-136 494.0
17 TraesCS4A01G369900 chr5B 88.496 113 12 1 767 878 550223429 550223317 4.440000e-28 135.0
18 TraesCS4A01G369900 chr6D 88.219 365 35 4 1828 2191 421869134 421869491 1.820000e-116 429.0
19 TraesCS4A01G369900 chr6D 86.992 123 13 3 767 888 69849200 69849080 4.440000e-28 135.0
20 TraesCS4A01G369900 chr6D 86.400 125 11 5 764 884 6319206 6319328 5.750000e-27 132.0
21 TraesCS4A01G369900 chr2A 81.157 536 73 17 959 1474 138156144 138156671 3.070000e-109 405.0
22 TraesCS4A01G369900 chr2A 92.910 268 11 3 2189 2448 21737391 21737124 1.440000e-102 383.0
23 TraesCS4A01G369900 chr2A 85.654 237 22 9 468 697 768425278 768425509 3.290000e-59 239.0
24 TraesCS4A01G369900 chr2A 92.262 168 5 3 2289 2448 207656092 207655925 5.510000e-57 231.0
25 TraesCS4A01G369900 chr2A 94.079 152 9 0 2190 2341 207656312 207656161 5.510000e-57 231.0
26 TraesCS4A01G369900 chr2A 93.069 101 7 0 348 448 39694588 39694488 5.710000e-32 148.0
27 TraesCS4A01G369900 chr2A 89.831 118 4 3 2343 2452 207656201 207656084 7.390000e-31 145.0
28 TraesCS4A01G369900 chrUn 93.091 275 10 4 2183 2448 962718 962992 6.640000e-106 394.0
29 TraesCS4A01G369900 chr7A 92.199 282 10 6 2186 2455 664784147 664783866 3.090000e-104 388.0
30 TraesCS4A01G369900 chr7A 85.200 250 24 9 455 695 694033015 694032770 7.080000e-61 244.0
31 TraesCS4A01G369900 chr7A 93.421 152 9 1 2190 2341 34148543 34148393 9.220000e-55 224.0
32 TraesCS4A01G369900 chr7A 89.256 121 3 5 2343 2453 27477072 27476952 2.660000e-30 143.0
33 TraesCS4A01G369900 chr7D 90.592 287 21 2 1828 2113 82722205 82722486 2.410000e-100 375.0
34 TraesCS4A01G369900 chr7D 85.020 247 27 7 455 695 605758662 605758420 2.550000e-60 243.0
35 TraesCS4A01G369900 chr7D 84.739 249 28 8 455 697 618584243 618584487 9.160000e-60 241.0
36 TraesCS4A01G369900 chr7D 92.381 105 8 0 344 448 64732032 64732136 1.590000e-32 150.0
37 TraesCS4A01G369900 chr7D 87.302 126 10 5 763 884 482123294 482123417 3.440000e-29 139.0
38 TraesCS4A01G369900 chr7D 91.753 97 7 1 2464 2560 82722722 82722817 1.600000e-27 134.0
39 TraesCS4A01G369900 chr7D 86.179 123 12 1 2019 2141 82722036 82722153 7.440000e-26 128.0
40 TraesCS4A01G369900 chr4D 90.244 287 22 2 1828 2113 381400259 381400540 1.120000e-98 370.0
41 TraesCS4A01G369900 chr4D 92.661 109 7 1 2453 2560 381401052 381401160 3.410000e-34 156.0
42 TraesCS4A01G369900 chr4D 86.179 123 12 1 2019 2141 381400090 381400207 7.440000e-26 128.0
43 TraesCS4A01G369900 chr1A 88.686 274 21 4 1828 2096 532239357 532239089 2.460000e-85 326.0
44 TraesCS4A01G369900 chr1A 92.357 157 12 0 2183 2339 545521058 545520902 9.220000e-55 224.0
45 TraesCS4A01G369900 chr1A 90.826 109 9 1 2453 2560 532238664 532238556 7.390000e-31 145.0
46 TraesCS4A01G369900 chr7B 83.152 368 44 12 1828 2189 571690443 571690798 1.140000e-83 320.0
47 TraesCS4A01G369900 chr7B 91.765 170 13 1 1828 1996 692296760 692296591 4.260000e-58 235.0
48 TraesCS4A01G369900 chr7B 92.523 107 8 0 2454 2560 692295967 692295861 1.230000e-33 154.0
49 TraesCS4A01G369900 chr7B 90.826 109 10 0 341 449 383714614 383714722 2.050000e-31 147.0
50 TraesCS4A01G369900 chr7B 84.252 127 15 2 2021 2147 692296927 692296806 4.480000e-23 119.0
51 TraesCS4A01G369900 chr3A 84.861 251 27 8 455 698 633900593 633900839 2.550000e-60 243.0
52 TraesCS4A01G369900 chr3A 93.125 160 9 2 2183 2341 697747442 697747600 1.530000e-57 233.0
53 TraesCS4A01G369900 chr3A 89.431 123 5 3 2334 2448 697747551 697747673 5.710000e-32 148.0
54 TraesCS4A01G369900 chr3A 90.826 109 9 1 2453 2560 736153131 736153023 7.390000e-31 145.0
55 TraesCS4A01G369900 chr3A 84.906 106 11 1 2042 2147 736153782 736153682 4.510000e-18 102.0
56 TraesCS4A01G369900 chr6A 94.194 155 9 0 2187 2341 454800773 454800927 1.180000e-58 237.0
57 TraesCS4A01G369900 chr6A 84.211 247 29 7 455 695 118717243 118717001 5.510000e-57 231.0
58 TraesCS4A01G369900 chr6A 91.150 113 3 3 2343 2448 602855694 602855582 2.050000e-31 147.0
59 TraesCS4A01G369900 chr5A 84.553 246 28 7 456 695 457547601 457547842 4.260000e-58 235.0
60 TraesCS4A01G369900 chr5A 86.667 120 13 3 764 881 680971255 680971137 2.070000e-26 130.0
61 TraesCS4A01G369900 chr6B 92.308 156 9 1 2189 2341 277631068 277630913 4.290000e-53 219.0
62 TraesCS4A01G369900 chr6B 89.474 114 11 1 336 448 652642414 652642527 2.660000e-30 143.0
63 TraesCS4A01G369900 chr4B 92.366 131 9 1 1828 1957 281731244 281731114 4.350000e-43 185.0
64 TraesCS4A01G369900 chr4B 91.509 106 8 1 343 448 530968706 530968810 7.390000e-31 145.0
65 TraesCS4A01G369900 chr4B 87.705 122 11 3 330 448 30365138 30365018 3.440000e-29 139.0
66 TraesCS4A01G369900 chr4B 87.931 116 13 1 764 878 40171122 40171007 4.440000e-28 135.0
67 TraesCS4A01G369900 chr4B 87.179 117 14 1 767 882 580387326 580387210 5.750000e-27 132.0
68 TraesCS4A01G369900 chr4B 84.906 106 9 2 2042 2147 281731388 281731290 1.620000e-17 100.0
69 TraesCS4A01G369900 chr3D 90.435 115 10 1 765 878 91710930 91710816 1.590000e-32 150.0
70 TraesCS4A01G369900 chr3D 85.827 127 16 2 324 448 4307186 4307060 1.600000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G369900 chr4A 641587615 641590175 2560 False 4730.000000 4730 100.000000 1 2561 1 chr4A.!!$F2 2560
1 TraesCS4A01G369900 chr4A 641576696 641577411 715 False 512.000000 512 80.218000 995 1702 1 chr4A.!!$F1 707
2 TraesCS4A01G369900 chr5D 530491059 530491847 788 True 531.000000 531 79.678000 906 1675 1 chr5D.!!$R2 769
3 TraesCS4A01G369900 chr5D 530438422 530442743 4321 True 512.000000 885 82.769000 17 1759 3 chr5D.!!$R3 1742
4 TraesCS4A01G369900 chr2D 131388522 131389238 716 False 678.000000 678 84.116000 959 1666 1 chr2D.!!$F1 707
5 TraesCS4A01G369900 chr2B 185792448 185794523 2075 False 320.350000 562 88.030500 10 1542 2 chr2B.!!$F2 1532
6 TraesCS4A01G369900 chr5B 669687647 669690557 2910 True 494.000000 494 84.522000 995 1511 2 chr5B.!!$R2 516
7 TraesCS4A01G369900 chr2A 138156144 138156671 527 False 405.000000 405 81.157000 959 1474 1 chr2A.!!$F1 515
8 TraesCS4A01G369900 chr7D 82722036 82722817 781 False 212.333333 375 89.508000 1828 2560 3 chr7D.!!$F4 732
9 TraesCS4A01G369900 chr4D 381400090 381401160 1070 False 218.000000 370 89.694667 1828 2560 3 chr4D.!!$F1 732
10 TraesCS4A01G369900 chr1A 532238556 532239357 801 True 235.500000 326 89.756000 1828 2560 2 chr1A.!!$R2 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.107165 GGGATGGTAGTGGAAGGTGC 60.107 60.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 2722 0.035317 ACATCACACACGCTGGTCAT 59.965 50.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.228822 CACGGAAAATCAAAGTGGAGGG 59.771 50.000 0.00 0.00 0.00 4.30
71 72 2.107552 ACGGAAAATCAAAGTGGAGGGA 59.892 45.455 0.00 0.00 0.00 4.20
87 88 0.107165 GGGATGGTAGTGGAAGGTGC 60.107 60.000 0.00 0.00 0.00 5.01
88 89 0.912486 GGATGGTAGTGGAAGGTGCT 59.088 55.000 0.00 0.00 0.00 4.40
99 100 2.487762 TGGAAGGTGCTGCGAAAATAAG 59.512 45.455 0.00 0.00 0.00 1.73
113 259 4.922692 CGAAAATAAGCCAGCAATGTGAAA 59.077 37.500 0.00 0.00 0.00 2.69
117 263 3.540314 AAGCCAGCAATGTGAAAACAA 57.460 38.095 0.00 0.00 0.00 2.83
118 264 3.540314 AGCCAGCAATGTGAAAACAAA 57.460 38.095 0.00 0.00 0.00 2.83
123 269 3.242712 CAGCAATGTGAAAACAAACCGTC 59.757 43.478 0.00 0.00 0.00 4.79
130 276 0.452585 AAAACAAACCGTCCACACCG 59.547 50.000 0.00 0.00 0.00 4.94
137 283 4.446413 CGTCCACACCGCCCTACC 62.446 72.222 0.00 0.00 0.00 3.18
147 293 1.269703 CCGCCCTACCAACTACCCTT 61.270 60.000 0.00 0.00 0.00 3.95
152 298 3.882444 CCCTACCAACTACCCTTTTAGC 58.118 50.000 0.00 0.00 0.00 3.09
157 303 2.749621 CCAACTACCCTTTTAGCAGCAG 59.250 50.000 0.00 0.00 0.00 4.24
163 309 4.844349 ACCCTTTTAGCAGCAGAGATTA 57.156 40.909 0.00 0.00 0.00 1.75
168 314 5.877012 CCTTTTAGCAGCAGAGATTACTTCA 59.123 40.000 0.00 0.00 0.00 3.02
169 315 6.372659 CCTTTTAGCAGCAGAGATTACTTCAA 59.627 38.462 0.00 0.00 0.00 2.69
170 316 7.094634 CCTTTTAGCAGCAGAGATTACTTCAAA 60.095 37.037 0.00 0.00 0.00 2.69
173 616 6.006759 AGCAGCAGAGATTACTTCAAAAAC 57.993 37.500 0.00 0.00 0.00 2.43
178 621 6.920210 AGCAGAGATTACTTCAAAAACTTTGC 59.080 34.615 0.00 0.00 35.36 3.68
179 622 6.129352 GCAGAGATTACTTCAAAAACTTTGCG 60.129 38.462 0.00 0.00 0.00 4.85
201 644 2.350057 TTGATTGGTTGAACCGGTCA 57.650 45.000 8.04 14.87 42.58 4.02
205 648 0.768622 TTGGTTGAACCGGTCATCCT 59.231 50.000 23.20 5.72 43.88 3.24
239 682 4.512298 TGTCCCCACCATCCATCTTATAT 58.488 43.478 0.00 0.00 0.00 0.86
245 688 6.176183 CCCACCATCCATCTTATATCAGAAC 58.824 44.000 0.00 0.00 0.00 3.01
247 690 6.013032 CCACCATCCATCTTATATCAGAACCT 60.013 42.308 0.00 0.00 0.00 3.50
249 692 8.766476 CACCATCCATCTTATATCAGAACCTAT 58.234 37.037 0.00 0.00 0.00 2.57
250 693 8.766476 ACCATCCATCTTATATCAGAACCTATG 58.234 37.037 0.00 0.00 0.00 2.23
251 694 8.985922 CCATCCATCTTATATCAGAACCTATGA 58.014 37.037 0.00 0.00 0.00 2.15
268 1212 6.929625 ACCTATGACTCTGGATTTATGATCG 58.070 40.000 0.00 0.00 0.00 3.69
272 1216 4.230657 GACTCTGGATTTATGATCGACGG 58.769 47.826 0.00 0.00 0.00 4.79
287 1231 2.102420 TCGACGGATGGCAGTCATTAAT 59.898 45.455 6.24 0.00 38.88 1.40
291 1235 4.776349 ACGGATGGCAGTCATTAATGTAA 58.224 39.130 14.97 0.00 35.97 2.41
292 1236 5.189928 ACGGATGGCAGTCATTAATGTAAA 58.810 37.500 14.97 0.00 35.97 2.01
298 1242 7.936496 TGGCAGTCATTAATGTAAAATCTGA 57.064 32.000 14.97 0.00 0.00 3.27
309 1253 7.849804 AATGTAAAATCTGATACTCAAGCGT 57.150 32.000 0.00 0.00 0.00 5.07
311 1255 7.060600 TGTAAAATCTGATACTCAAGCGTTG 57.939 36.000 0.00 0.00 0.00 4.10
323 1267 2.047560 GCGTTGGCTAAGACCGGT 60.048 61.111 6.92 6.92 35.83 5.28
324 1268 2.098831 GCGTTGGCTAAGACCGGTC 61.099 63.158 27.67 27.67 35.83 4.79
325 1269 1.804326 CGTTGGCTAAGACCGGTCG 60.804 63.158 28.26 15.82 34.09 4.79
326 1270 1.291272 GTTGGCTAAGACCGGTCGT 59.709 57.895 28.26 27.18 34.09 4.34
327 1271 0.527565 GTTGGCTAAGACCGGTCGTA 59.472 55.000 28.26 26.83 34.09 3.43
328 1272 1.067635 GTTGGCTAAGACCGGTCGTAA 60.068 52.381 28.26 16.44 34.09 3.18
329 1273 1.477553 TGGCTAAGACCGGTCGTAAT 58.522 50.000 28.26 17.81 34.09 1.89
330 1274 1.135527 TGGCTAAGACCGGTCGTAATG 59.864 52.381 28.26 18.55 34.09 1.90
331 1275 1.537562 GGCTAAGACCGGTCGTAATGG 60.538 57.143 28.26 17.88 34.09 3.16
332 1276 1.406539 GCTAAGACCGGTCGTAATGGA 59.593 52.381 28.26 9.28 34.09 3.41
333 1277 2.159198 GCTAAGACCGGTCGTAATGGAA 60.159 50.000 28.26 8.54 34.09 3.53
334 1278 2.667473 AAGACCGGTCGTAATGGAAG 57.333 50.000 28.26 0.00 34.09 3.46
335 1279 1.553706 AGACCGGTCGTAATGGAAGT 58.446 50.000 28.26 4.27 34.09 3.01
336 1280 2.726821 AGACCGGTCGTAATGGAAGTA 58.273 47.619 28.26 0.00 34.09 2.24
337 1281 3.294214 AGACCGGTCGTAATGGAAGTAT 58.706 45.455 28.26 3.48 34.09 2.12
338 1282 3.317430 AGACCGGTCGTAATGGAAGTATC 59.683 47.826 28.26 0.00 34.09 2.24
339 1283 3.025978 ACCGGTCGTAATGGAAGTATCA 58.974 45.455 0.00 0.00 0.00 2.15
340 1284 3.640029 ACCGGTCGTAATGGAAGTATCAT 59.360 43.478 0.00 0.00 0.00 2.45
341 1285 4.828939 ACCGGTCGTAATGGAAGTATCATA 59.171 41.667 0.00 0.00 0.00 2.15
342 1286 5.159209 CCGGTCGTAATGGAAGTATCATAC 58.841 45.833 0.00 0.00 0.00 2.39
343 1287 5.048224 CCGGTCGTAATGGAAGTATCATACT 60.048 44.000 0.00 0.00 41.73 2.12
357 1301 8.927675 AAGTATCATACTTAGTACTCCCTCTG 57.072 38.462 8.41 0.00 46.53 3.35
358 1302 8.048016 AGTATCATACTTAGTACTCCCTCTGT 57.952 38.462 0.00 0.00 34.86 3.41
359 1303 8.158789 AGTATCATACTTAGTACTCCCTCTGTC 58.841 40.741 0.00 0.00 34.86 3.51
360 1304 5.692928 TCATACTTAGTACTCCCTCTGTCC 58.307 45.833 0.00 0.00 0.00 4.02
361 1305 3.002038 ACTTAGTACTCCCTCTGTCCG 57.998 52.381 0.00 0.00 0.00 4.79
362 1306 2.299521 CTTAGTACTCCCTCTGTCCGG 58.700 57.143 0.00 0.00 0.00 5.14
363 1307 1.588239 TAGTACTCCCTCTGTCCGGA 58.412 55.000 0.00 0.00 0.00 5.14
364 1308 0.702902 AGTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
365 1309 1.076677 AGTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
366 1310 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
367 1311 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
368 1312 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
369 1313 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
370 1314 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
371 1315 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
372 1316 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
373 1317 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
374 1318 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
375 1319 2.094390 TCTGTCCGGAAATACTTGTCGG 60.094 50.000 5.23 0.00 41.80 4.79
376 1320 1.894466 TGTCCGGAAATACTTGTCGGA 59.106 47.619 5.23 0.00 46.06 4.55
377 1321 2.660189 TCCGGAAATACTTGTCGGAC 57.340 50.000 0.00 0.00 43.84 4.79
378 1322 1.894466 TCCGGAAATACTTGTCGGACA 59.106 47.619 0.00 6.76 43.84 4.02
379 1323 2.299582 TCCGGAAATACTTGTCGGACAA 59.700 45.455 21.30 21.30 43.84 3.18
380 1324 3.068560 CCGGAAATACTTGTCGGACAAA 58.931 45.455 22.60 10.91 42.94 2.83
381 1325 3.687698 CCGGAAATACTTGTCGGACAAAT 59.312 43.478 22.60 16.57 42.94 2.32
382 1326 4.436852 CCGGAAATACTTGTCGGACAAATG 60.437 45.833 22.60 15.05 42.94 2.32
383 1327 4.436852 CGGAAATACTTGTCGGACAAATGG 60.437 45.833 22.60 14.41 37.69 3.16
384 1328 4.698304 GGAAATACTTGTCGGACAAATGGA 59.302 41.667 22.60 10.75 37.69 3.41
385 1329 5.357032 GGAAATACTTGTCGGACAAATGGAT 59.643 40.000 22.60 12.46 37.69 3.41
386 1330 6.540914 GGAAATACTTGTCGGACAAATGGATA 59.459 38.462 22.60 11.40 37.69 2.59
387 1331 7.066525 GGAAATACTTGTCGGACAAATGGATAA 59.933 37.037 22.60 0.00 37.69 1.75
388 1332 7.931578 AATACTTGTCGGACAAATGGATAAA 57.068 32.000 22.60 0.00 37.69 1.40
389 1333 8.519799 AATACTTGTCGGACAAATGGATAAAT 57.480 30.769 22.60 1.59 37.69 1.40
390 1334 9.621629 AATACTTGTCGGACAAATGGATAAATA 57.378 29.630 22.60 0.00 37.69 1.40
391 1335 9.793259 ATACTTGTCGGACAAATGGATAAATAT 57.207 29.630 22.60 0.22 37.69 1.28
393 1337 9.273016 ACTTGTCGGACAAATGGATAAATATAG 57.727 33.333 22.60 9.52 37.69 1.31
394 1338 9.489084 CTTGTCGGACAAATGGATAAATATAGA 57.511 33.333 22.60 0.00 37.69 1.98
396 1340 9.435688 TGTCGGACAAATGGATAAATATAGATG 57.564 33.333 8.68 0.00 0.00 2.90
397 1341 9.436957 GTCGGACAAATGGATAAATATAGATGT 57.563 33.333 2.62 0.00 0.00 3.06
438 1382 8.637196 ACATCTAGATACATCCATTCTTACGA 57.363 34.615 4.54 0.00 0.00 3.43
439 1383 8.516234 ACATCTAGATACATCCATTCTTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
440 1384 8.515414 CATCTAGATACATCCATTCTTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
441 1385 8.459911 TCTAGATACATCCATTCTTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
442 1386 8.909923 TCTAGATACATCCATTCTTACGACAAA 58.090 33.333 0.00 0.00 0.00 2.83
443 1387 9.698309 CTAGATACATCCATTCTTACGACAAAT 57.302 33.333 0.00 0.00 0.00 2.32
461 1405 9.416794 ACGACAAATATTTTTAAACATCATGCA 57.583 25.926 0.00 0.00 0.00 3.96
531 1475 9.653287 AGAAAATGAAAGTTGAGTATCGTATCA 57.347 29.630 0.00 0.00 38.61 2.15
534 1478 9.599866 AAATGAAAGTTGAGTATCGTATCATGA 57.400 29.630 0.00 0.00 38.61 3.07
535 1479 9.770097 AATGAAAGTTGAGTATCGTATCATGAT 57.230 29.630 13.81 13.81 38.61 2.45
537 1481 9.678941 TGAAAGTTGAGTATCGTATCATGATAC 57.321 33.333 28.73 28.73 43.85 2.24
538 1482 9.130312 GAAAGTTGAGTATCGTATCATGATACC 57.870 37.037 30.97 20.57 44.33 2.73
539 1483 6.843208 AGTTGAGTATCGTATCATGATACCG 58.157 40.000 30.97 25.84 44.33 4.02
540 1484 6.430308 AGTTGAGTATCGTATCATGATACCGT 59.570 38.462 30.97 23.61 44.33 4.83
541 1485 7.605309 AGTTGAGTATCGTATCATGATACCGTA 59.395 37.037 30.97 22.79 44.33 4.02
542 1486 8.396390 GTTGAGTATCGTATCATGATACCGTAT 58.604 37.037 30.97 24.41 44.33 3.06
543 1487 8.139521 TGAGTATCGTATCATGATACCGTATC 57.860 38.462 30.97 23.38 44.33 2.24
544 1488 7.767198 TGAGTATCGTATCATGATACCGTATCA 59.233 37.037 30.97 25.00 44.33 2.15
574 1518 8.744008 AAATGATATACTACTACGTGTCATGC 57.256 34.615 0.00 0.00 0.00 4.06
575 1519 6.870971 TGATATACTACTACGTGTCATGCA 57.129 37.500 0.00 0.00 0.00 3.96
576 1520 7.448748 TGATATACTACTACGTGTCATGCAT 57.551 36.000 0.00 0.00 0.00 3.96
577 1521 7.305474 TGATATACTACTACGTGTCATGCATG 58.695 38.462 21.07 21.07 39.90 4.06
578 1522 3.165058 ACTACTACGTGTCATGCATGG 57.835 47.619 25.97 12.57 38.39 3.66
579 1523 2.496070 ACTACTACGTGTCATGCATGGT 59.504 45.455 25.97 17.54 38.39 3.55
580 1524 3.697542 ACTACTACGTGTCATGCATGGTA 59.302 43.478 25.97 17.72 38.39 3.25
581 1525 3.603158 ACTACGTGTCATGCATGGTAA 57.397 42.857 25.97 9.59 38.39 2.85
582 1526 4.137116 ACTACGTGTCATGCATGGTAAT 57.863 40.909 25.97 7.81 38.39 1.89
583 1527 5.270893 ACTACGTGTCATGCATGGTAATA 57.729 39.130 25.97 11.52 38.39 0.98
584 1528 5.666462 ACTACGTGTCATGCATGGTAATAA 58.334 37.500 25.97 2.92 38.39 1.40
585 1529 6.110033 ACTACGTGTCATGCATGGTAATAAA 58.890 36.000 25.97 2.13 38.39 1.40
586 1530 6.765989 ACTACGTGTCATGCATGGTAATAAAT 59.234 34.615 25.97 7.64 38.39 1.40
587 1531 7.929245 ACTACGTGTCATGCATGGTAATAAATA 59.071 33.333 25.97 0.55 38.39 1.40
588 1532 7.561021 ACGTGTCATGCATGGTAATAAATAA 57.439 32.000 25.97 0.00 38.39 1.40
589 1533 7.990917 ACGTGTCATGCATGGTAATAAATAAA 58.009 30.769 25.97 0.00 38.39 1.40
590 1534 8.462811 ACGTGTCATGCATGGTAATAAATAAAA 58.537 29.630 25.97 0.00 38.39 1.52
591 1535 9.462174 CGTGTCATGCATGGTAATAAATAAAAT 57.538 29.630 25.97 0.00 0.00 1.82
633 1577 6.114187 TGATAGTACAATGCATTAGGGAGG 57.886 41.667 12.53 0.80 0.00 4.30
634 1578 5.606749 TGATAGTACAATGCATTAGGGAGGT 59.393 40.000 12.53 7.32 0.00 3.85
635 1579 6.785466 TGATAGTACAATGCATTAGGGAGGTA 59.215 38.462 12.53 6.29 0.00 3.08
636 1580 5.552870 AGTACAATGCATTAGGGAGGTAG 57.447 43.478 12.53 0.00 0.00 3.18
637 1581 4.969359 AGTACAATGCATTAGGGAGGTAGT 59.031 41.667 12.53 8.97 0.00 2.73
638 1582 6.141083 AGTACAATGCATTAGGGAGGTAGTA 58.859 40.000 12.53 4.10 0.00 1.82
639 1583 6.787957 AGTACAATGCATTAGGGAGGTAGTAT 59.212 38.462 12.53 0.00 0.00 2.12
640 1584 6.115448 ACAATGCATTAGGGAGGTAGTATC 57.885 41.667 12.53 0.00 0.00 2.24
641 1585 5.606749 ACAATGCATTAGGGAGGTAGTATCA 59.393 40.000 12.53 0.00 0.00 2.15
642 1586 6.101150 ACAATGCATTAGGGAGGTAGTATCAA 59.899 38.462 12.53 0.00 0.00 2.57
643 1587 6.959606 ATGCATTAGGGAGGTAGTATCAAT 57.040 37.500 0.00 0.00 0.00 2.57
644 1588 8.321353 CAATGCATTAGGGAGGTAGTATCAATA 58.679 37.037 12.53 0.00 0.00 1.90
645 1589 7.241042 TGCATTAGGGAGGTAGTATCAATAC 57.759 40.000 0.00 0.00 0.00 1.89
646 1590 6.785466 TGCATTAGGGAGGTAGTATCAATACA 59.215 38.462 3.18 0.00 35.74 2.29
647 1591 7.097834 GCATTAGGGAGGTAGTATCAATACAC 58.902 42.308 3.18 0.21 35.74 2.90
648 1592 7.038941 GCATTAGGGAGGTAGTATCAATACACT 60.039 40.741 3.18 0.00 35.74 3.55
649 1593 8.871125 CATTAGGGAGGTAGTATCAATACACTT 58.129 37.037 3.18 0.00 35.74 3.16
650 1594 8.849543 TTAGGGAGGTAGTATCAATACACTTT 57.150 34.615 3.18 0.00 35.74 2.66
651 1595 9.940974 TTAGGGAGGTAGTATCAATACACTTTA 57.059 33.333 3.18 0.00 35.74 1.85
652 1596 8.247666 AGGGAGGTAGTATCAATACACTTTAC 57.752 38.462 3.18 0.00 35.74 2.01
653 1597 7.842743 AGGGAGGTAGTATCAATACACTTTACA 59.157 37.037 3.18 0.00 35.74 2.41
654 1598 8.648693 GGGAGGTAGTATCAATACACTTTACAT 58.351 37.037 3.18 0.00 35.74 2.29
655 1599 9.477484 GGAGGTAGTATCAATACACTTTACATG 57.523 37.037 3.18 0.00 35.74 3.21
692 1636 5.546621 TGGTACTCTCCATTATAACCAGC 57.453 43.478 0.00 0.00 32.07 4.85
693 1637 4.347000 TGGTACTCTCCATTATAACCAGCC 59.653 45.833 0.00 0.00 32.07 4.85
694 1638 4.593634 GGTACTCTCCATTATAACCAGCCT 59.406 45.833 0.00 0.00 0.00 4.58
695 1639 5.778750 GGTACTCTCCATTATAACCAGCCTA 59.221 44.000 0.00 0.00 0.00 3.93
696 1640 6.269307 GGTACTCTCCATTATAACCAGCCTAA 59.731 42.308 0.00 0.00 0.00 2.69
697 1641 6.824958 ACTCTCCATTATAACCAGCCTAAA 57.175 37.500 0.00 0.00 0.00 1.85
698 1642 7.394144 ACTCTCCATTATAACCAGCCTAAAT 57.606 36.000 0.00 0.00 0.00 1.40
699 1643 7.454225 ACTCTCCATTATAACCAGCCTAAATC 58.546 38.462 0.00 0.00 0.00 2.17
700 1644 7.293535 ACTCTCCATTATAACCAGCCTAAATCT 59.706 37.037 0.00 0.00 0.00 2.40
701 1645 7.453393 TCTCCATTATAACCAGCCTAAATCTG 58.547 38.462 0.00 0.00 0.00 2.90
702 1646 7.292356 TCTCCATTATAACCAGCCTAAATCTGA 59.708 37.037 0.00 0.00 33.54 3.27
703 1647 7.988937 TCCATTATAACCAGCCTAAATCTGAT 58.011 34.615 0.00 0.00 33.54 2.90
704 1648 8.448008 TCCATTATAACCAGCCTAAATCTGATT 58.552 33.333 0.00 0.00 33.54 2.57
705 1649 8.517878 CCATTATAACCAGCCTAAATCTGATTG 58.482 37.037 3.22 0.00 33.54 2.67
706 1650 9.288576 CATTATAACCAGCCTAAATCTGATTGA 57.711 33.333 3.22 0.00 33.54 2.57
708 1652 9.866655 TTATAACCAGCCTAAATCTGATTGATT 57.133 29.630 3.22 0.00 46.49 2.57
779 1723 1.619827 TCCGTTGTACTCCATCCGTTT 59.380 47.619 0.00 0.00 0.00 3.60
781 1725 2.353406 CCGTTGTACTCCATCCGTTTCT 60.353 50.000 0.00 0.00 0.00 2.52
782 1726 3.119388 CCGTTGTACTCCATCCGTTTCTA 60.119 47.826 0.00 0.00 0.00 2.10
783 1727 4.487948 CGTTGTACTCCATCCGTTTCTAA 58.512 43.478 0.00 0.00 0.00 2.10
784 1728 4.925054 CGTTGTACTCCATCCGTTTCTAAA 59.075 41.667 0.00 0.00 0.00 1.85
793 1737 8.925338 ACTCCATCCGTTTCTAAATATAAGTCT 58.075 33.333 0.00 0.00 0.00 3.24
828 1814 8.806429 TTTCAATATGGACTACATGTGAATGT 57.194 30.769 9.11 1.93 41.03 2.71
829 1815 9.898152 TTTCAATATGGACTACATGTGAATGTA 57.102 29.630 9.11 0.00 41.03 2.29
837 1823 9.588096 TGGACTACATGTGAATGTATATAGACT 57.412 33.333 9.11 0.00 36.54 3.24
867 1853 7.934855 AGATTGTAGATTCACTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
868 1854 8.345724 AGATTGTAGATTCACTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
869 1855 8.800332 AGATTGTAGATTCACTCATTTTGCTTT 58.200 29.630 0.00 0.00 0.00 3.51
870 1856 8.752766 ATTGTAGATTCACTCATTTTGCTTTG 57.247 30.769 0.00 0.00 0.00 2.77
871 1857 7.275888 TGTAGATTCACTCATTTTGCTTTGT 57.724 32.000 0.00 0.00 0.00 2.83
872 1858 8.389779 TGTAGATTCACTCATTTTGCTTTGTA 57.610 30.769 0.00 0.00 0.00 2.41
873 1859 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
901 1887 8.783999 AGATCACTCATTTTACTTCGTATACG 57.216 34.615 19.23 19.23 41.45 3.06
902 1888 7.861372 AGATCACTCATTTTACTTCGTATACGG 59.139 37.037 24.18 12.19 40.29 4.02
904 1890 6.968904 TCACTCATTTTACTTCGTATACGGTC 59.031 38.462 24.18 0.00 40.29 4.79
912 1898 3.067742 ACTTCGTATACGGTCCATTCCAG 59.932 47.826 24.18 9.27 40.29 3.86
915 1901 2.555325 CGTATACGGTCCATTCCAGCTA 59.445 50.000 17.61 0.00 35.37 3.32
922 1908 4.652421 ACGGTCCATTCCAGCTATTACTTA 59.348 41.667 0.00 0.00 0.00 2.24
923 1909 5.129815 ACGGTCCATTCCAGCTATTACTTAA 59.870 40.000 0.00 0.00 0.00 1.85
926 1912 7.307989 CGGTCCATTCCAGCTATTACTTAATTG 60.308 40.741 0.00 0.00 0.00 2.32
929 1919 7.719633 TCCATTCCAGCTATTACTTAATTGGTC 59.280 37.037 0.00 0.00 29.34 4.02
935 1925 9.003658 CCAGCTATTACTTAATTGGTCCTATTG 57.996 37.037 8.62 0.00 29.34 1.90
1079 2106 3.432588 CCTCGTCGTCGGCACTCT 61.433 66.667 1.55 0.00 37.69 3.24
1081 2108 4.400109 TCGTCGTCGGCACTCTGC 62.400 66.667 1.55 0.00 44.08 4.26
1106 2133 2.283298 GATCATCACAAGGACATGCGT 58.717 47.619 0.00 0.00 0.00 5.24
1109 2136 0.246360 ATCACAAGGACATGCGTCGA 59.754 50.000 0.00 0.00 43.61 4.20
1152 2182 0.038892 GTTACGACTCCTGCGTGGAA 60.039 55.000 0.00 0.00 45.63 3.53
1224 2283 2.203294 GTCGTGGCCACCAACCTT 60.203 61.111 29.95 0.00 34.18 3.50
1372 2431 3.491652 GCCTCAAAGCGGCGTCTC 61.492 66.667 9.37 0.00 37.87 3.36
1374 2433 2.097038 CCTCAAAGCGGCGTCTCAG 61.097 63.158 9.37 3.02 0.00 3.35
1380 2439 0.667792 AAGCGGCGTCTCAGAAACTC 60.668 55.000 9.37 0.00 0.00 3.01
1395 2454 0.036010 AACTCTTGGATGCCACCGAG 60.036 55.000 7.07 7.07 41.48 4.63
1416 2475 2.513204 CCCAGCTCCTGCGACATG 60.513 66.667 0.00 0.00 45.42 3.21
1420 2479 2.894387 GCTCCTGCGACATGCTCC 60.894 66.667 0.00 0.00 46.63 4.70
1501 2573 1.229428 TATGCGATTGCTAGCTTGCC 58.771 50.000 17.57 2.17 43.34 4.52
1551 2630 6.489700 TCAAGTTTAATTCTTGGTCTCATGCA 59.510 34.615 15.87 0.00 41.52 3.96
1552 2631 6.899393 AGTTTAATTCTTGGTCTCATGCAA 57.101 33.333 0.00 0.00 0.00 4.08
1559 2638 5.885230 TCTTGGTCTCATGCAACTTATTG 57.115 39.130 0.00 0.00 38.99 1.90
1590 2669 1.376543 CAGCTAGCTGGTGGTTGATG 58.623 55.000 33.06 7.82 40.17 3.07
1596 2675 2.165167 AGCTGGTGGTTGATGTGATTG 58.835 47.619 0.00 0.00 0.00 2.67
1603 2682 4.081752 GGTGGTTGATGTGATTGCCATTTA 60.082 41.667 0.00 0.00 0.00 1.40
1608 2687 3.627123 TGATGTGATTGCCATTTACTCGG 59.373 43.478 0.00 0.00 0.00 4.63
1611 2690 2.354821 GTGATTGCCATTTACTCGGTCC 59.645 50.000 0.00 0.00 0.00 4.46
1638 2722 6.592994 TCGCATAAAATGAAATTGCCATTTGA 59.407 30.769 15.53 10.96 41.71 2.69
1641 2725 8.399425 GCATAAAATGAAATTGCCATTTGATGA 58.601 29.630 27.80 14.22 46.30 2.92
1645 2729 4.823157 TGAAATTGCCATTTGATGACCAG 58.177 39.130 0.00 0.00 32.35 4.00
1652 2736 1.536766 CATTTGATGACCAGCGTGTGT 59.463 47.619 0.00 0.00 0.00 3.72
1660 2744 0.179059 ACCAGCGTGTGTGATGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
1675 2764 8.338259 GTGTGATGTCAATTCCATATACAGAAC 58.662 37.037 0.00 0.00 0.00 3.01
1679 2768 5.057149 GTCAATTCCATATACAGAACGGCT 58.943 41.667 0.00 0.00 0.00 5.52
1702 2796 7.205992 GCTCTAATGTGACAGATAACATCTCA 58.794 38.462 0.00 0.00 37.58 3.27
1706 2800 7.936950 AATGTGACAGATAACATCTCATACG 57.063 36.000 0.00 0.00 37.58 3.06
1717 2811 4.843728 ACATCTCATACGGGAATTGTTGT 58.156 39.130 0.00 0.00 0.00 3.32
1718 2812 4.876107 ACATCTCATACGGGAATTGTTGTC 59.124 41.667 0.00 0.00 0.00 3.18
1720 2814 3.193903 TCTCATACGGGAATTGTTGTCGA 59.806 43.478 0.00 0.00 0.00 4.20
1722 2816 4.116961 TCATACGGGAATTGTTGTCGATC 58.883 43.478 0.00 0.00 0.00 3.69
1739 2840 3.260632 TCGATCCACATTTTGTCTCCAGA 59.739 43.478 0.00 0.00 0.00 3.86
1759 2860 0.803117 CAAGACAGGCTGCATGAGTG 59.197 55.000 22.12 11.16 0.00 3.51
1760 2861 0.322277 AAGACAGGCTGCATGAGTGG 60.322 55.000 22.12 0.00 0.00 4.00
1761 2862 1.748122 GACAGGCTGCATGAGTGGG 60.748 63.158 22.12 0.00 0.00 4.61
1762 2863 2.439701 CAGGCTGCATGAGTGGGG 60.440 66.667 8.91 0.00 0.00 4.96
1763 2864 2.611800 AGGCTGCATGAGTGGGGA 60.612 61.111 0.50 0.00 0.00 4.81
1764 2865 2.439156 GGCTGCATGAGTGGGGAC 60.439 66.667 0.50 0.00 0.00 4.46
1777 2878 4.097361 GGGACCTCCTGTTCGGCC 62.097 72.222 0.00 0.00 35.95 6.13
1778 2879 4.097361 GGACCTCCTGTTCGGCCC 62.097 72.222 0.00 0.00 0.00 5.80
1779 2880 3.003763 GACCTCCTGTTCGGCCCT 61.004 66.667 0.00 0.00 0.00 5.19
1783 2884 1.684049 CTCCTGTTCGGCCCTCTCT 60.684 63.158 0.00 0.00 0.00 3.10
1785 2886 2.125350 CTGTTCGGCCCTCTCTGC 60.125 66.667 0.00 0.00 0.00 4.26
1786 2887 3.997064 CTGTTCGGCCCTCTCTGCG 62.997 68.421 0.00 0.00 0.00 5.18
1792 2893 4.400961 GCCCTCTCTGCGCCAGTT 62.401 66.667 4.18 0.00 32.61 3.16
1794 2895 2.659016 CCTCTCTGCGCCAGTTCA 59.341 61.111 4.18 0.00 32.61 3.18
1796 2897 1.447489 CTCTCTGCGCCAGTTCAGG 60.447 63.158 4.18 0.00 32.61 3.86
1797 2898 2.435586 CTCTGCGCCAGTTCAGGG 60.436 66.667 4.18 0.00 32.61 4.45
1804 2905 2.360852 CCAGTTCAGGGCTGCTGG 60.361 66.667 0.00 0.00 41.89 4.85
1806 2907 3.573229 AGTTCAGGGCTGCTGGCA 61.573 61.111 18.73 0.00 44.01 4.92
1830 2931 1.063006 GCACGACGCCGACAGTATA 59.937 57.895 0.00 0.00 39.50 1.47
1865 3027 6.479660 ACAGAACCACAACTATTGCAAAATTG 59.520 34.615 1.71 10.92 0.00 2.32
1976 3138 8.395633 GGCAACTTATAATTATTGTCGACAAGT 58.604 33.333 32.19 22.49 39.47 3.16
2025 3191 2.806856 CTGCCATCGCTTCGCTCAC 61.807 63.158 0.00 0.00 35.36 3.51
2026 3192 2.510238 GCCATCGCTTCGCTCACT 60.510 61.111 0.00 0.00 0.00 3.41
2028 3194 0.598680 GCCATCGCTTCGCTCACTAT 60.599 55.000 0.00 0.00 0.00 2.12
2113 3279 0.253160 TGCTCCAACTATCCACCCCT 60.253 55.000 0.00 0.00 0.00 4.79
2114 3280 0.470341 GCTCCAACTATCCACCCCTC 59.530 60.000 0.00 0.00 0.00 4.30
2115 3281 1.972207 GCTCCAACTATCCACCCCTCT 60.972 57.143 0.00 0.00 0.00 3.69
2116 3282 2.043227 CTCCAACTATCCACCCCTCTC 58.957 57.143 0.00 0.00 0.00 3.20
2117 3283 1.132500 CCAACTATCCACCCCTCTCC 58.868 60.000 0.00 0.00 0.00 3.71
2118 3284 1.344496 CCAACTATCCACCCCTCTCCT 60.344 57.143 0.00 0.00 0.00 3.69
2119 3285 2.043227 CAACTATCCACCCCTCTCCTC 58.957 57.143 0.00 0.00 0.00 3.71
2120 3286 0.563672 ACTATCCACCCCTCTCCTCC 59.436 60.000 0.00 0.00 0.00 4.30
2121 3287 0.563173 CTATCCACCCCTCTCCTCCA 59.437 60.000 0.00 0.00 0.00 3.86
2122 3288 0.264955 TATCCACCCCTCTCCTCCAC 59.735 60.000 0.00 0.00 0.00 4.02
2123 3289 2.553438 ATCCACCCCTCTCCTCCACC 62.553 65.000 0.00 0.00 0.00 4.61
2124 3290 2.122729 CACCCCTCTCCTCCACCA 59.877 66.667 0.00 0.00 0.00 4.17
2125 3291 2.122954 ACCCCTCTCCTCCACCAC 59.877 66.667 0.00 0.00 0.00 4.16
2126 3292 2.689034 CCCCTCTCCTCCACCACC 60.689 72.222 0.00 0.00 0.00 4.61
2127 3293 2.689034 CCCTCTCCTCCACCACCC 60.689 72.222 0.00 0.00 0.00 4.61
2128 3294 2.689034 CCTCTCCTCCACCACCCC 60.689 72.222 0.00 0.00 0.00 4.95
2129 3295 2.689034 CTCTCCTCCACCACCCCC 60.689 72.222 0.00 0.00 0.00 5.40
2130 3296 3.537506 TCTCCTCCACCACCCCCA 61.538 66.667 0.00 0.00 0.00 4.96
2131 3297 3.330720 CTCCTCCACCACCCCCAC 61.331 72.222 0.00 0.00 0.00 4.61
2132 3298 3.869934 TCCTCCACCACCCCCACT 61.870 66.667 0.00 0.00 0.00 4.00
2141 3307 1.978617 CACCCCCACTCCATTGCAC 60.979 63.158 0.00 0.00 0.00 4.57
2144 3581 1.535204 CCCCCACTCCATTGCACAAC 61.535 60.000 0.00 0.00 0.00 3.32
2147 3584 0.038892 CCACTCCATTGCACAACTGC 60.039 55.000 0.00 0.00 44.52 4.40
2171 3608 5.063180 TCTGCAGCCATAAATTTTCTGTG 57.937 39.130 9.47 0.00 0.00 3.66
2181 3618 8.379902 GCCATAAATTTTCTGTGGTAAAATTCG 58.620 33.333 0.00 1.31 42.68 3.34
2195 3632 9.712359 GTGGTAAAATTCGAAACATATACTTCC 57.288 33.333 0.00 0.00 0.00 3.46
2199 3636 7.478520 AAATTCGAAACATATACTTCCTCCG 57.521 36.000 0.00 0.00 0.00 4.63
2203 3640 4.738740 CGAAACATATACTTCCTCCGTCAC 59.261 45.833 0.00 0.00 0.00 3.67
2204 3641 3.984508 ACATATACTTCCTCCGTCACG 57.015 47.619 0.00 0.00 0.00 4.35
2219 3656 1.798813 GTCACGGTTTAGAAGGCACAG 59.201 52.381 0.00 0.00 0.00 3.66
2222 3659 3.069872 TCACGGTTTAGAAGGCACAGTTA 59.930 43.478 0.00 0.00 0.00 2.24
2223 3660 3.810941 CACGGTTTAGAAGGCACAGTTAA 59.189 43.478 0.00 0.00 0.00 2.01
2225 3662 4.514066 ACGGTTTAGAAGGCACAGTTAAAG 59.486 41.667 0.00 0.00 0.00 1.85
2226 3663 4.514066 CGGTTTAGAAGGCACAGTTAAAGT 59.486 41.667 0.00 0.00 0.00 2.66
2227 3664 5.008316 CGGTTTAGAAGGCACAGTTAAAGTT 59.992 40.000 0.00 0.00 0.00 2.66
2228 3665 6.206498 GGTTTAGAAGGCACAGTTAAAGTTG 58.794 40.000 0.00 0.00 0.00 3.16
2229 3666 3.990318 AGAAGGCACAGTTAAAGTTGC 57.010 42.857 0.00 0.00 0.00 4.17
2232 3669 1.333619 AGGCACAGTTAAAGTTGCGTG 59.666 47.619 0.00 0.00 0.00 5.34
2244 3705 3.096489 AGTTGCGTGCATTTTCACAAT 57.904 38.095 0.00 0.00 36.80 2.71
2246 3707 4.229096 AGTTGCGTGCATTTTCACAATAG 58.771 39.130 0.00 0.00 36.80 1.73
2247 3708 4.023279 AGTTGCGTGCATTTTCACAATAGA 60.023 37.500 0.00 0.00 36.80 1.98
2248 3709 3.820689 TGCGTGCATTTTCACAATAGAC 58.179 40.909 0.00 0.00 36.80 2.59
2251 3712 4.679197 GCGTGCATTTTCACAATAGACAAA 59.321 37.500 0.00 0.00 36.80 2.83
2260 3721 8.825667 TTTTCACAATAGACAAAATTTAGGGC 57.174 30.769 0.00 0.00 0.00 5.19
2262 3723 4.798387 CACAATAGACAAAATTTAGGGCGC 59.202 41.667 0.00 0.00 0.00 6.53
2264 3725 5.127031 ACAATAGACAAAATTTAGGGCGCAT 59.873 36.000 10.83 0.00 0.00 4.73
2267 3728 2.345876 ACAAAATTTAGGGCGCATTGC 58.654 42.857 10.83 0.00 45.38 3.56
2282 3743 6.901699 GCGCATTGCATTTATTTCTAGTAG 57.098 37.500 9.69 0.00 45.45 2.57
2285 3746 7.571244 GCGCATTGCATTTATTTCTAGTAGCTA 60.571 37.037 9.69 0.00 45.45 3.32
2315 3776 8.740906 AGTACTATTTCTATATGCATGCGTAGT 58.259 33.333 23.20 16.83 0.00 2.73
2316 3777 7.818493 ACTATTTCTATATGCATGCGTAGTG 57.182 36.000 23.20 17.51 0.00 2.74
2317 3778 7.378966 ACTATTTCTATATGCATGCGTAGTGT 58.621 34.615 23.20 10.69 0.00 3.55
2318 3779 5.905480 TTTCTATATGCATGCGTAGTGTG 57.095 39.130 23.20 13.27 0.00 3.82
2319 3780 4.846779 TCTATATGCATGCGTAGTGTGA 57.153 40.909 23.20 15.02 0.00 3.58
2320 3781 5.195001 TCTATATGCATGCGTAGTGTGAA 57.805 39.130 23.20 2.26 0.00 3.18
2321 3782 5.783111 TCTATATGCATGCGTAGTGTGAAT 58.217 37.500 23.20 9.61 0.00 2.57
2322 3783 4.737353 ATATGCATGCGTAGTGTGAATG 57.263 40.909 23.20 0.00 0.00 2.67
2323 3784 0.447406 TGCATGCGTAGTGTGAATGC 59.553 50.000 14.09 0.00 43.08 3.56
2324 3785 0.729116 GCATGCGTAGTGTGAATGCT 59.271 50.000 0.00 0.00 40.34 3.79
2325 3786 1.933181 GCATGCGTAGTGTGAATGCTA 59.067 47.619 0.00 0.00 40.34 3.49
2326 3787 2.545526 GCATGCGTAGTGTGAATGCTAT 59.454 45.455 0.00 0.00 40.34 2.97
2327 3788 3.002656 GCATGCGTAGTGTGAATGCTATT 59.997 43.478 0.00 0.00 40.34 1.73
2328 3789 4.496341 GCATGCGTAGTGTGAATGCTATTT 60.496 41.667 0.00 0.00 40.34 1.40
2329 3790 5.572211 CATGCGTAGTGTGAATGCTATTTT 58.428 37.500 0.00 0.00 0.00 1.82
2330 3791 5.621197 TGCGTAGTGTGAATGCTATTTTT 57.379 34.783 0.00 0.00 0.00 1.94
2352 3813 5.902613 TTAGCCCATCTTTATATGCATGC 57.097 39.130 11.82 11.82 0.00 4.06
2353 3814 2.751259 AGCCCATCTTTATATGCATGCG 59.249 45.455 14.09 0.00 0.00 4.73
2354 3815 2.489329 GCCCATCTTTATATGCATGCGT 59.511 45.455 18.07 18.07 0.00 5.24
2355 3816 3.689161 GCCCATCTTTATATGCATGCGTA 59.311 43.478 21.43 21.43 0.00 4.42
2356 3817 4.201851 GCCCATCTTTATATGCATGCGTAG 60.202 45.833 23.20 12.64 0.00 3.51
2357 3818 4.937620 CCCATCTTTATATGCATGCGTAGT 59.062 41.667 23.20 14.19 0.00 2.73
2358 3819 5.163824 CCCATCTTTATATGCATGCGTAGTG 60.164 44.000 23.20 13.27 0.00 2.74
2359 3820 5.409520 CCATCTTTATATGCATGCGTAGTGT 59.590 40.000 23.20 10.69 0.00 3.55
2360 3821 5.905480 TCTTTATATGCATGCGTAGTGTG 57.095 39.130 23.20 13.87 0.00 3.82
2361 3822 5.596845 TCTTTATATGCATGCGTAGTGTGA 58.403 37.500 23.20 15.61 0.00 3.58
2362 3823 6.045955 TCTTTATATGCATGCGTAGTGTGAA 58.954 36.000 23.20 10.08 0.00 3.18
2363 3824 6.705825 TCTTTATATGCATGCGTAGTGTGAAT 59.294 34.615 23.20 9.61 0.00 2.57
2364 3825 6.859420 TTATATGCATGCGTAGTGTGAATT 57.141 33.333 23.20 8.00 0.00 2.17
2365 3826 5.756195 ATATGCATGCGTAGTGTGAATTT 57.244 34.783 23.20 2.22 0.00 1.82
2366 3827 3.913548 TGCATGCGTAGTGTGAATTTT 57.086 38.095 14.09 0.00 0.00 1.82
2367 3828 4.235939 TGCATGCGTAGTGTGAATTTTT 57.764 36.364 14.09 0.00 0.00 1.94
2368 3829 5.363979 TGCATGCGTAGTGTGAATTTTTA 57.636 34.783 14.09 0.00 0.00 1.52
2369 3830 5.389778 TGCATGCGTAGTGTGAATTTTTAG 58.610 37.500 14.09 0.00 0.00 1.85
2370 3831 4.262976 GCATGCGTAGTGTGAATTTTTAGC 59.737 41.667 0.00 0.00 0.00 3.09
2371 3832 4.413495 TGCGTAGTGTGAATTTTTAGCC 57.587 40.909 0.00 0.00 0.00 3.93
2372 3833 3.189702 TGCGTAGTGTGAATTTTTAGCCC 59.810 43.478 0.00 0.00 0.00 5.19
2373 3834 3.189702 GCGTAGTGTGAATTTTTAGCCCA 59.810 43.478 0.00 0.00 0.00 5.36
2374 3835 4.142469 GCGTAGTGTGAATTTTTAGCCCAT 60.142 41.667 0.00 0.00 0.00 4.00
2375 3836 5.569413 CGTAGTGTGAATTTTTAGCCCATC 58.431 41.667 0.00 0.00 0.00 3.51
2376 3837 5.354234 CGTAGTGTGAATTTTTAGCCCATCT 59.646 40.000 0.00 0.00 0.00 2.90
2377 3838 5.904362 AGTGTGAATTTTTAGCCCATCTC 57.096 39.130 0.00 0.00 0.00 2.75
2378 3839 5.324409 AGTGTGAATTTTTAGCCCATCTCA 58.676 37.500 0.00 0.00 0.00 3.27
2379 3840 5.954150 AGTGTGAATTTTTAGCCCATCTCAT 59.046 36.000 0.00 0.00 0.00 2.90
2380 3841 7.118723 AGTGTGAATTTTTAGCCCATCTCATA 58.881 34.615 0.00 0.00 0.00 2.15
2381 3842 7.615365 AGTGTGAATTTTTAGCCCATCTCATAA 59.385 33.333 0.00 0.00 0.00 1.90
2382 3843 7.702348 GTGTGAATTTTTAGCCCATCTCATAAC 59.298 37.037 0.00 0.00 0.00 1.89
2383 3844 7.147915 TGTGAATTTTTAGCCCATCTCATAACC 60.148 37.037 0.00 0.00 0.00 2.85
2384 3845 6.894654 TGAATTTTTAGCCCATCTCATAACCA 59.105 34.615 0.00 0.00 0.00 3.67
2385 3846 7.398618 TGAATTTTTAGCCCATCTCATAACCAA 59.601 33.333 0.00 0.00 0.00 3.67
2386 3847 7.919385 ATTTTTAGCCCATCTCATAACCAAT 57.081 32.000 0.00 0.00 0.00 3.16
2387 3848 9.432982 AATTTTTAGCCCATCTCATAACCAATA 57.567 29.630 0.00 0.00 0.00 1.90
2388 3849 8.463930 TTTTTAGCCCATCTCATAACCAATAG 57.536 34.615 0.00 0.00 0.00 1.73
2389 3850 7.387265 TTTAGCCCATCTCATAACCAATAGA 57.613 36.000 0.00 0.00 0.00 1.98
2390 3851 7.574021 TTAGCCCATCTCATAACCAATAGAT 57.426 36.000 0.00 0.00 0.00 1.98
2391 3852 8.679344 TTAGCCCATCTCATAACCAATAGATA 57.321 34.615 0.00 0.00 0.00 1.98
2392 3853 7.574021 AGCCCATCTCATAACCAATAGATAA 57.426 36.000 0.00 0.00 0.00 1.75
2393 3854 8.167691 AGCCCATCTCATAACCAATAGATAAT 57.832 34.615 0.00 0.00 0.00 1.28
2394 3855 8.270744 AGCCCATCTCATAACCAATAGATAATC 58.729 37.037 0.00 0.00 0.00 1.75
2395 3856 8.049117 GCCCATCTCATAACCAATAGATAATCA 58.951 37.037 0.00 0.00 0.00 2.57
2396 3857 9.388506 CCCATCTCATAACCAATAGATAATCAC 57.611 37.037 0.00 0.00 0.00 3.06
2397 3858 9.388506 CCATCTCATAACCAATAGATAATCACC 57.611 37.037 0.00 0.00 0.00 4.02
2402 3863 9.615660 TCATAACCAATAGATAATCACCTAGGT 57.384 33.333 9.21 9.21 0.00 3.08
2403 3864 9.877178 CATAACCAATAGATAATCACCTAGGTC 57.123 37.037 12.84 0.00 0.00 3.85
2404 3865 6.936968 ACCAATAGATAATCACCTAGGTCC 57.063 41.667 12.84 0.00 0.00 4.46
2405 3866 5.785940 ACCAATAGATAATCACCTAGGTCCC 59.214 44.000 12.84 0.00 0.00 4.46
2406 3867 5.785423 CCAATAGATAATCACCTAGGTCCCA 59.215 44.000 12.84 0.00 0.00 4.37
2407 3868 6.070538 CCAATAGATAATCACCTAGGTCCCAG 60.071 46.154 12.84 0.16 0.00 4.45
2408 3869 4.834406 AGATAATCACCTAGGTCCCAGA 57.166 45.455 12.84 6.81 0.00 3.86
2409 3870 4.746466 AGATAATCACCTAGGTCCCAGAG 58.254 47.826 12.84 0.00 0.00 3.35
2410 3871 4.420552 AGATAATCACCTAGGTCCCAGAGA 59.579 45.833 12.84 5.56 0.00 3.10
2420 3881 3.767711 AGGTCCCAGAGAATTTTCAACC 58.232 45.455 0.00 1.23 0.00 3.77
2421 3882 2.488153 GGTCCCAGAGAATTTTCAACCG 59.512 50.000 0.00 0.00 0.00 4.44
2422 3883 2.095212 GTCCCAGAGAATTTTCAACCGC 60.095 50.000 0.00 0.00 0.00 5.68
2423 3884 1.135689 CCCAGAGAATTTTCAACCGCG 60.136 52.381 0.00 0.00 0.00 6.46
2424 3885 1.606606 CAGAGAATTTTCAACCGCGC 58.393 50.000 0.00 0.00 0.00 6.86
2426 3887 0.521735 GAGAATTTTCAACCGCGCCT 59.478 50.000 0.00 0.00 0.00 5.52
2427 3888 0.958822 AGAATTTTCAACCGCGCCTT 59.041 45.000 0.00 0.00 0.00 4.35
2428 3889 1.068541 AGAATTTTCAACCGCGCCTTC 60.069 47.619 0.00 0.00 0.00 3.46
2432 3893 1.595466 TTTCAACCGCGCCTTCTAAA 58.405 45.000 0.00 0.00 0.00 1.85
2433 3894 0.869730 TTCAACCGCGCCTTCTAAAC 59.130 50.000 0.00 0.00 0.00 2.01
2434 3895 0.952010 TCAACCGCGCCTTCTAAACC 60.952 55.000 0.00 0.00 0.00 3.27
2435 3896 2.030958 AACCGCGCCTTCTAAACCG 61.031 57.895 0.00 0.00 0.00 4.44
2438 3899 2.450345 CGCGCCTTCTAAACCGGAC 61.450 63.158 9.46 0.00 0.00 4.79
2439 3900 2.450345 GCGCCTTCTAAACCGGACG 61.450 63.158 9.46 0.00 0.00 4.79
2440 3901 1.213537 CGCCTTCTAAACCGGACGA 59.786 57.895 9.46 0.00 0.00 4.20
2441 3902 0.801067 CGCCTTCTAAACCGGACGAG 60.801 60.000 9.46 0.98 0.00 4.18
2442 3903 0.459759 GCCTTCTAAACCGGACGAGG 60.460 60.000 9.46 7.56 37.30 4.63
2445 3906 2.098770 CCTTCTAAACCGGACGAGGTAG 59.901 54.545 9.46 0.00 45.21 3.18
2447 3908 3.627395 TCTAAACCGGACGAGGTAGTA 57.373 47.619 9.46 0.00 45.21 1.82
2448 3909 3.950397 TCTAAACCGGACGAGGTAGTAA 58.050 45.455 9.46 0.00 45.21 2.24
2449 3910 4.526970 TCTAAACCGGACGAGGTAGTAAT 58.473 43.478 9.46 0.00 45.21 1.89
2450 3911 5.680619 TCTAAACCGGACGAGGTAGTAATA 58.319 41.667 9.46 0.00 45.21 0.98
2451 3912 6.299141 TCTAAACCGGACGAGGTAGTAATAT 58.701 40.000 9.46 0.00 45.21 1.28
2452 3913 7.450074 TCTAAACCGGACGAGGTAGTAATATA 58.550 38.462 9.46 0.00 45.21 0.86
2457 3918 7.955918 ACCGGACGAGGTAGTAATATATTTTT 58.044 34.615 9.46 0.00 43.89 1.94
2479 3940 7.566760 TTTCATAATCCATACACATGTCCAC 57.433 36.000 0.00 0.00 0.00 4.02
2506 6115 8.939201 ATCTTACTGTAGACATGTTCAGAATG 57.061 34.615 23.48 15.44 37.54 2.67
2551 7049 1.707989 TGCTGTCCTGTCCCCAAAATA 59.292 47.619 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.089361 ACCATCCCTCCACTTTGATTTTC 58.911 43.478 0.00 0.00 0.00 2.29
70 71 2.014068 GCAGCACCTTCCACTACCATC 61.014 57.143 0.00 0.00 0.00 3.51
71 72 0.035056 GCAGCACCTTCCACTACCAT 60.035 55.000 0.00 0.00 0.00 3.55
87 88 2.634982 TTGCTGGCTTATTTTCGCAG 57.365 45.000 0.00 0.00 0.00 5.18
88 89 2.230992 ACATTGCTGGCTTATTTTCGCA 59.769 40.909 0.00 0.00 0.00 5.10
99 100 2.287644 GGTTTGTTTTCACATTGCTGGC 59.712 45.455 0.00 0.00 31.06 4.85
113 259 2.474612 GCGGTGTGGACGGTTTGTT 61.475 57.895 0.00 0.00 0.00 2.83
123 269 1.546589 TAGTTGGTAGGGCGGTGTGG 61.547 60.000 0.00 0.00 0.00 4.17
130 276 2.893215 AAAAGGGTAGTTGGTAGGGC 57.107 50.000 0.00 0.00 0.00 5.19
137 283 3.674997 TCTGCTGCTAAAAGGGTAGTTG 58.325 45.455 0.00 0.00 0.00 3.16
147 293 7.744087 TTTTGAAGTAATCTCTGCTGCTAAA 57.256 32.000 0.00 0.00 0.00 1.85
152 298 7.096312 GCAAAGTTTTTGAAGTAATCTCTGCTG 60.096 37.037 5.77 0.00 0.00 4.41
157 303 7.679659 AACGCAAAGTTTTTGAAGTAATCTC 57.320 32.000 5.77 0.00 40.88 2.75
170 316 9.417490 GGTTCAACCAATCAAAACGCAAAGTTT 62.417 37.037 0.01 0.00 45.66 2.66
173 616 4.260172 GGTTCAACCAATCAAAACGCAAAG 60.260 41.667 0.01 0.00 38.42 2.77
178 621 2.223618 ACCGGTTCAACCAATCAAAACG 60.224 45.455 7.52 0.00 38.47 3.60
179 622 3.181485 TGACCGGTTCAACCAATCAAAAC 60.181 43.478 9.42 0.00 38.47 2.43
201 644 1.489230 GGACATACAAACCCCGAGGAT 59.511 52.381 0.00 0.00 36.73 3.24
208 651 0.406361 TGGTGGGGACATACAAACCC 59.594 55.000 0.00 0.00 46.14 4.11
223 666 7.013823 AGGTTCTGATATAAGATGGATGGTG 57.986 40.000 0.00 0.00 0.00 4.17
239 682 7.565029 TCATAAATCCAGAGTCATAGGTTCTGA 59.435 37.037 11.39 1.94 40.54 3.27
245 688 7.032580 GTCGATCATAAATCCAGAGTCATAGG 58.967 42.308 0.00 0.00 0.00 2.57
247 690 6.349363 CCGTCGATCATAAATCCAGAGTCATA 60.349 42.308 0.00 0.00 0.00 2.15
249 692 4.261614 CCGTCGATCATAAATCCAGAGTCA 60.262 45.833 0.00 0.00 0.00 3.41
250 693 4.023107 TCCGTCGATCATAAATCCAGAGTC 60.023 45.833 0.00 0.00 0.00 3.36
251 694 3.889538 TCCGTCGATCATAAATCCAGAGT 59.110 43.478 0.00 0.00 0.00 3.24
256 1200 2.673368 GCCATCCGTCGATCATAAATCC 59.327 50.000 0.00 0.00 0.00 3.01
268 1212 3.206150 ACATTAATGACTGCCATCCGTC 58.794 45.455 22.16 0.00 33.53 4.79
272 1216 8.623903 TCAGATTTTACATTAATGACTGCCATC 58.376 33.333 22.16 13.43 33.53 3.51
298 1242 3.522553 GTCTTAGCCAACGCTTGAGTAT 58.477 45.455 0.00 0.00 45.55 2.12
302 1246 0.669318 CGGTCTTAGCCAACGCTTGA 60.669 55.000 0.00 0.00 45.55 3.02
303 1247 1.635663 CCGGTCTTAGCCAACGCTTG 61.636 60.000 0.00 0.00 45.55 4.01
309 1253 1.255882 TTACGACCGGTCTTAGCCAA 58.744 50.000 30.92 11.21 0.00 4.52
311 1255 1.537562 CCATTACGACCGGTCTTAGCC 60.538 57.143 30.92 5.79 0.00 3.93
316 1260 1.553706 ACTTCCATTACGACCGGTCT 58.446 50.000 30.92 20.06 0.00 3.85
317 1261 3.067180 TGATACTTCCATTACGACCGGTC 59.933 47.826 25.28 25.28 0.00 4.79
318 1262 3.025978 TGATACTTCCATTACGACCGGT 58.974 45.455 6.92 6.92 0.00 5.28
319 1263 3.720949 TGATACTTCCATTACGACCGG 57.279 47.619 0.00 0.00 0.00 5.28
320 1264 6.010294 AGTATGATACTTCCATTACGACCG 57.990 41.667 0.00 0.00 34.86 4.79
321 1265 8.574737 ACTAAGTATGATACTTCCATTACGACC 58.425 37.037 20.15 0.00 45.38 4.79
327 1271 9.091220 GGGAGTACTAAGTATGATACTTCCATT 57.909 37.037 20.15 7.03 45.38 3.16
328 1272 8.457757 AGGGAGTACTAAGTATGATACTTCCAT 58.542 37.037 20.15 10.08 45.38 3.41
329 1273 7.823635 AGGGAGTACTAAGTATGATACTTCCA 58.176 38.462 20.15 4.56 45.38 3.53
330 1274 8.165397 AGAGGGAGTACTAAGTATGATACTTCC 58.835 40.741 20.15 14.13 45.38 3.46
331 1275 9.005777 CAGAGGGAGTACTAAGTATGATACTTC 57.994 40.741 20.15 7.29 45.38 3.01
333 1277 8.048016 ACAGAGGGAGTACTAAGTATGATACT 57.952 38.462 0.00 0.00 41.73 2.12
334 1278 7.391275 GGACAGAGGGAGTACTAAGTATGATAC 59.609 44.444 0.00 0.00 0.00 2.24
335 1279 7.460071 GGACAGAGGGAGTACTAAGTATGATA 58.540 42.308 0.00 0.00 0.00 2.15
336 1280 6.308566 GGACAGAGGGAGTACTAAGTATGAT 58.691 44.000 0.00 0.00 0.00 2.45
337 1281 5.686913 CGGACAGAGGGAGTACTAAGTATGA 60.687 48.000 0.00 0.00 0.00 2.15
338 1282 4.515944 CGGACAGAGGGAGTACTAAGTATG 59.484 50.000 0.00 0.00 0.00 2.39
339 1283 4.446023 CCGGACAGAGGGAGTACTAAGTAT 60.446 50.000 0.00 0.00 0.00 2.12
340 1284 3.118112 CCGGACAGAGGGAGTACTAAGTA 60.118 52.174 0.00 0.00 0.00 2.24
341 1285 2.356947 CCGGACAGAGGGAGTACTAAGT 60.357 54.545 0.00 0.00 0.00 2.24
342 1286 2.092538 TCCGGACAGAGGGAGTACTAAG 60.093 54.545 0.00 0.00 0.00 2.18
343 1287 1.918262 TCCGGACAGAGGGAGTACTAA 59.082 52.381 0.00 0.00 0.00 2.24
344 1288 1.588239 TCCGGACAGAGGGAGTACTA 58.412 55.000 0.00 0.00 0.00 1.82
345 1289 0.702902 TTCCGGACAGAGGGAGTACT 59.297 55.000 1.83 0.00 33.01 2.73
346 1290 1.553706 TTTCCGGACAGAGGGAGTAC 58.446 55.000 1.83 0.00 33.01 2.73
347 1291 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
348 1292 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
349 1293 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
350 1294 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
351 1295 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
352 1296 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
353 1297 3.179830 CGACAAGTATTTCCGGACAGAG 58.820 50.000 1.83 0.00 0.00 3.35
354 1298 2.094390 CCGACAAGTATTTCCGGACAGA 60.094 50.000 1.83 0.00 42.49 3.41
355 1299 2.094390 TCCGACAAGTATTTCCGGACAG 60.094 50.000 1.83 0.00 43.47 3.51
356 1300 1.894466 TCCGACAAGTATTTCCGGACA 59.106 47.619 1.83 0.00 43.47 4.02
357 1301 2.660189 TCCGACAAGTATTTCCGGAC 57.340 50.000 1.83 0.00 43.47 4.79
358 1302 1.894466 TGTCCGACAAGTATTTCCGGA 59.106 47.619 0.00 0.00 45.74 5.14
359 1303 2.373540 TGTCCGACAAGTATTTCCGG 57.626 50.000 0.00 0.00 41.36 5.14
360 1304 4.436852 CCATTTGTCCGACAAGTATTTCCG 60.437 45.833 13.51 0.00 39.53 4.30
361 1305 4.698304 TCCATTTGTCCGACAAGTATTTCC 59.302 41.667 13.51 0.00 39.53 3.13
362 1306 5.873179 TCCATTTGTCCGACAAGTATTTC 57.127 39.130 13.51 0.00 39.53 2.17
363 1307 7.931578 TTATCCATTTGTCCGACAAGTATTT 57.068 32.000 13.51 4.26 39.53 1.40
364 1308 7.931578 TTTATCCATTTGTCCGACAAGTATT 57.068 32.000 13.51 3.16 39.53 1.89
365 1309 9.793259 ATATTTATCCATTTGTCCGACAAGTAT 57.207 29.630 13.51 3.62 39.53 2.12
367 1311 9.273016 CTATATTTATCCATTTGTCCGACAAGT 57.727 33.333 13.51 8.64 39.53 3.16
368 1312 9.489084 TCTATATTTATCCATTTGTCCGACAAG 57.511 33.333 13.51 4.09 39.53 3.16
370 1314 9.435688 CATCTATATTTATCCATTTGTCCGACA 57.564 33.333 0.00 0.00 0.00 4.35
371 1315 9.436957 ACATCTATATTTATCCATTTGTCCGAC 57.563 33.333 0.00 0.00 0.00 4.79
435 1379 9.416794 TGCATGATGTTTAAAAATATTTGTCGT 57.583 25.926 0.39 0.00 0.00 4.34
448 1392 9.348476 TGCCTAGTTAATATGCATGATGTTTAA 57.652 29.630 10.16 3.43 31.00 1.52
449 1393 8.916628 TGCCTAGTTAATATGCATGATGTTTA 57.083 30.769 10.16 0.00 31.00 2.01
450 1394 7.822161 TGCCTAGTTAATATGCATGATGTTT 57.178 32.000 10.16 0.00 31.00 2.83
451 1395 7.822161 TTGCCTAGTTAATATGCATGATGTT 57.178 32.000 10.16 1.75 35.32 2.71
452 1396 8.413309 AATTGCCTAGTTAATATGCATGATGT 57.587 30.769 10.16 0.00 35.32 3.06
453 1397 9.701098 AAAATTGCCTAGTTAATATGCATGATG 57.299 29.630 10.16 0.00 35.32 3.07
454 1398 9.701098 CAAAATTGCCTAGTTAATATGCATGAT 57.299 29.630 10.16 0.00 35.32 2.45
455 1399 8.911965 TCAAAATTGCCTAGTTAATATGCATGA 58.088 29.630 10.16 0.00 35.32 3.07
456 1400 9.701098 ATCAAAATTGCCTAGTTAATATGCATG 57.299 29.630 10.16 0.00 35.32 4.06
505 1449 9.653287 TGATACGATACTCAACTTTCATTTTCT 57.347 29.630 0.00 0.00 0.00 2.52
508 1452 9.599866 TCATGATACGATACTCAACTTTCATTT 57.400 29.630 0.00 0.00 0.00 2.32
509 1453 9.770097 ATCATGATACGATACTCAACTTTCATT 57.230 29.630 6.36 0.00 0.00 2.57
511 1455 9.678941 GTATCATGATACGATACTCAACTTTCA 57.321 33.333 25.89 0.00 41.27 2.69
512 1456 9.130312 GGTATCATGATACGATACTCAACTTTC 57.870 37.037 30.32 13.81 43.13 2.62
513 1457 7.808381 CGGTATCATGATACGATACTCAACTTT 59.192 37.037 30.32 0.00 43.13 2.66
514 1458 7.040617 ACGGTATCATGATACGATACTCAACTT 60.041 37.037 30.32 11.26 43.13 2.66
515 1459 6.430308 ACGGTATCATGATACGATACTCAACT 59.570 38.462 30.32 10.79 43.13 3.16
516 1460 6.609533 ACGGTATCATGATACGATACTCAAC 58.390 40.000 30.32 17.00 43.13 3.18
517 1461 6.812879 ACGGTATCATGATACGATACTCAA 57.187 37.500 30.32 2.00 43.13 3.02
518 1462 7.767198 TGATACGGTATCATGATACGATACTCA 59.233 37.037 30.32 24.93 43.13 3.41
519 1463 8.139521 TGATACGGTATCATGATACGATACTC 57.860 38.462 30.32 23.33 43.13 2.59
548 1492 9.836076 GCATGACACGTAGTAGTATATCATTTA 57.164 33.333 0.00 0.00 41.61 1.40
549 1493 8.357402 TGCATGACACGTAGTAGTATATCATTT 58.643 33.333 0.00 0.00 41.61 2.32
550 1494 7.882179 TGCATGACACGTAGTAGTATATCATT 58.118 34.615 0.00 0.00 41.61 2.57
551 1495 7.448748 TGCATGACACGTAGTAGTATATCAT 57.551 36.000 0.00 0.00 41.61 2.45
552 1496 6.870971 TGCATGACACGTAGTAGTATATCA 57.129 37.500 0.00 0.00 41.61 2.15
553 1497 6.747739 CCATGCATGACACGTAGTAGTATATC 59.252 42.308 28.31 0.00 41.61 1.63
554 1498 6.208797 ACCATGCATGACACGTAGTAGTATAT 59.791 38.462 28.31 0.00 41.61 0.86
555 1499 5.533528 ACCATGCATGACACGTAGTAGTATA 59.466 40.000 28.31 0.00 41.61 1.47
556 1500 4.341235 ACCATGCATGACACGTAGTAGTAT 59.659 41.667 28.31 0.00 41.61 2.12
557 1501 3.697542 ACCATGCATGACACGTAGTAGTA 59.302 43.478 28.31 0.00 41.61 1.82
558 1502 2.496070 ACCATGCATGACACGTAGTAGT 59.504 45.455 28.31 9.97 41.61 2.73
559 1503 3.165058 ACCATGCATGACACGTAGTAG 57.835 47.619 28.31 9.32 41.61 2.57
560 1504 4.722361 TTACCATGCATGACACGTAGTA 57.278 40.909 28.31 15.65 41.61 1.82
562 1506 6.597262 TTTATTACCATGCATGACACGTAG 57.403 37.500 28.31 11.52 0.00 3.51
563 1507 8.664211 TTATTTATTACCATGCATGACACGTA 57.336 30.769 28.31 17.38 0.00 3.57
564 1508 7.561021 TTATTTATTACCATGCATGACACGT 57.439 32.000 28.31 18.40 0.00 4.49
565 1509 8.848948 TTTTATTTATTACCATGCATGACACG 57.151 30.769 28.31 13.38 0.00 4.49
607 1551 8.489489 CCTCCCTAATGCATTGTACTATCATAT 58.511 37.037 22.27 0.00 0.00 1.78
608 1552 7.457852 ACCTCCCTAATGCATTGTACTATCATA 59.542 37.037 22.27 0.00 0.00 2.15
609 1553 6.273260 ACCTCCCTAATGCATTGTACTATCAT 59.727 38.462 22.27 0.00 0.00 2.45
610 1554 5.606749 ACCTCCCTAATGCATTGTACTATCA 59.393 40.000 22.27 0.00 0.00 2.15
611 1555 6.115448 ACCTCCCTAATGCATTGTACTATC 57.885 41.667 22.27 0.00 0.00 2.08
612 1556 6.787957 ACTACCTCCCTAATGCATTGTACTAT 59.212 38.462 22.27 4.83 0.00 2.12
613 1557 6.141083 ACTACCTCCCTAATGCATTGTACTA 58.859 40.000 22.27 0.04 0.00 1.82
614 1558 4.969359 ACTACCTCCCTAATGCATTGTACT 59.031 41.667 22.27 0.00 0.00 2.73
615 1559 5.291905 ACTACCTCCCTAATGCATTGTAC 57.708 43.478 22.27 0.00 0.00 2.90
616 1560 6.785466 TGATACTACCTCCCTAATGCATTGTA 59.215 38.462 22.27 12.57 0.00 2.41
617 1561 5.606749 TGATACTACCTCCCTAATGCATTGT 59.393 40.000 22.27 12.09 0.00 2.71
618 1562 6.114187 TGATACTACCTCCCTAATGCATTG 57.886 41.667 22.27 11.41 0.00 2.82
619 1563 6.763715 TTGATACTACCTCCCTAATGCATT 57.236 37.500 17.56 17.56 0.00 3.56
620 1564 6.959606 ATTGATACTACCTCCCTAATGCAT 57.040 37.500 0.00 0.00 0.00 3.96
621 1565 6.785466 TGTATTGATACTACCTCCCTAATGCA 59.215 38.462 0.00 0.00 34.41 3.96
622 1566 7.038941 AGTGTATTGATACTACCTCCCTAATGC 60.039 40.741 3.11 0.00 34.41 3.56
623 1567 8.423906 AGTGTATTGATACTACCTCCCTAATG 57.576 38.462 3.11 0.00 34.41 1.90
624 1568 9.448587 AAAGTGTATTGATACTACCTCCCTAAT 57.551 33.333 3.11 0.00 34.41 1.73
625 1569 8.849543 AAAGTGTATTGATACTACCTCCCTAA 57.150 34.615 3.11 0.00 34.41 2.69
626 1570 9.359653 GTAAAGTGTATTGATACTACCTCCCTA 57.640 37.037 3.11 0.00 34.41 3.53
627 1571 7.842743 TGTAAAGTGTATTGATACTACCTCCCT 59.157 37.037 3.11 0.00 34.41 4.20
628 1572 8.015185 TGTAAAGTGTATTGATACTACCTCCC 57.985 38.462 3.11 0.00 34.41 4.30
629 1573 9.477484 CATGTAAAGTGTATTGATACTACCTCC 57.523 37.037 3.11 0.00 34.41 4.30
670 1614 4.347000 GGCTGGTTATAATGGAGAGTACCA 59.653 45.833 0.00 0.00 44.41 3.25
671 1615 4.593634 AGGCTGGTTATAATGGAGAGTACC 59.406 45.833 0.00 0.00 0.00 3.34
672 1616 5.810080 AGGCTGGTTATAATGGAGAGTAC 57.190 43.478 0.00 0.00 0.00 2.73
673 1617 7.924358 TTTAGGCTGGTTATAATGGAGAGTA 57.076 36.000 0.00 0.00 0.00 2.59
674 1618 6.824958 TTTAGGCTGGTTATAATGGAGAGT 57.175 37.500 0.00 0.00 0.00 3.24
675 1619 7.605691 CAGATTTAGGCTGGTTATAATGGAGAG 59.394 40.741 0.00 0.00 0.00 3.20
676 1620 7.292356 TCAGATTTAGGCTGGTTATAATGGAGA 59.708 37.037 0.00 0.00 34.20 3.71
677 1621 7.453393 TCAGATTTAGGCTGGTTATAATGGAG 58.547 38.462 0.00 0.00 34.20 3.86
678 1622 7.387265 TCAGATTTAGGCTGGTTATAATGGA 57.613 36.000 0.00 0.00 34.20 3.41
679 1623 8.517878 CAATCAGATTTAGGCTGGTTATAATGG 58.482 37.037 0.00 0.00 34.63 3.16
680 1624 9.288576 TCAATCAGATTTAGGCTGGTTATAATG 57.711 33.333 0.00 0.00 34.63 1.90
682 1626 9.866655 AATCAATCAGATTTAGGCTGGTTATAA 57.133 29.630 0.00 0.00 44.48 0.98
697 1641 9.872684 ACTCCATTAATACCAAATCAATCAGAT 57.127 29.630 0.00 0.00 39.09 2.90
748 1692 7.605410 TGGAGTACAACGGAAGATAAAATTC 57.395 36.000 0.00 0.00 0.00 2.17
749 1693 7.282450 GGATGGAGTACAACGGAAGATAAAATT 59.718 37.037 0.00 0.00 0.00 1.82
760 1704 1.997606 GAAACGGATGGAGTACAACGG 59.002 52.381 7.59 0.00 37.69 4.44
764 1708 9.976511 CTTATATTTAGAAACGGATGGAGTACA 57.023 33.333 0.00 0.00 0.00 2.90
842 1828 9.453572 AAGCAAAATGAGTGAATCTACAATCTA 57.546 29.630 0.00 0.00 36.14 1.98
843 1829 7.934855 AGCAAAATGAGTGAATCTACAATCT 57.065 32.000 0.00 0.00 36.14 2.40
844 1830 8.857216 CAAAGCAAAATGAGTGAATCTACAATC 58.143 33.333 0.00 0.00 35.78 2.67
846 1832 7.715657 ACAAAGCAAAATGAGTGAATCTACAA 58.284 30.769 0.00 0.00 0.00 2.41
847 1833 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
893 1879 1.338973 GCTGGAATGGACCGTATACGA 59.661 52.381 26.37 6.85 43.02 3.43
899 1885 3.039011 AGTAATAGCTGGAATGGACCGT 58.961 45.455 0.00 0.00 0.00 4.83
900 1886 3.753294 AGTAATAGCTGGAATGGACCG 57.247 47.619 0.00 0.00 0.00 4.79
901 1887 7.040409 CCAATTAAGTAATAGCTGGAATGGACC 60.040 40.741 0.00 0.00 0.00 4.46
902 1888 7.502561 ACCAATTAAGTAATAGCTGGAATGGAC 59.497 37.037 0.00 0.00 29.79 4.02
904 1890 7.040409 GGACCAATTAAGTAATAGCTGGAATGG 60.040 40.741 0.00 0.00 29.79 3.16
912 1898 8.919777 ACCAATAGGACCAATTAAGTAATAGC 57.080 34.615 0.00 0.00 38.69 2.97
915 1901 7.069455 GGCAACCAATAGGACCAATTAAGTAAT 59.931 37.037 0.00 0.00 38.69 1.89
922 1908 3.099141 CAGGCAACCAATAGGACCAATT 58.901 45.455 0.00 0.00 38.69 2.32
923 1909 2.738743 CAGGCAACCAATAGGACCAAT 58.261 47.619 0.00 0.00 38.69 3.16
926 1912 0.323360 TGCAGGCAACCAATAGGACC 60.323 55.000 0.00 0.00 38.69 4.46
929 1919 4.942761 ATTTATGCAGGCAACCAATAGG 57.057 40.909 0.00 0.00 42.21 2.57
935 1925 3.065019 CGTGTATTTATGCAGGCAACC 57.935 47.619 0.00 0.00 37.17 3.77
987 2014 2.833943 AGGATGCATCGCCATATGACTA 59.166 45.455 20.15 0.00 0.00 2.59
1079 2106 1.815003 CTTGTGATGATCGCGGGCA 60.815 57.895 6.13 5.09 0.00 5.36
1081 2108 1.143838 TCCTTGTGATGATCGCGGG 59.856 57.895 6.13 10.26 0.00 6.13
1333 2392 1.443872 CAGCACGTAGGTCACCGAC 60.444 63.158 0.00 0.00 0.00 4.79
1371 2430 2.553028 GGTGGCATCCAAGAGTTTCTGA 60.553 50.000 0.00 0.00 34.18 3.27
1372 2431 1.815003 GGTGGCATCCAAGAGTTTCTG 59.185 52.381 0.00 0.00 34.18 3.02
1374 2433 0.804989 CGGTGGCATCCAAGAGTTTC 59.195 55.000 0.00 0.00 34.18 2.78
1405 2464 1.830587 AACAGGAGCATGTCGCAGGA 61.831 55.000 0.00 0.00 46.13 3.86
1406 2465 1.364626 GAACAGGAGCATGTCGCAGG 61.365 60.000 0.00 0.00 46.13 4.85
1512 2588 1.285950 CTTGACGTCAGTGCCGAGA 59.714 57.895 19.11 0.00 0.00 4.04
1521 2597 6.053005 AGACCAAGAATTAAACTTGACGTCA 58.947 36.000 15.76 15.76 44.92 4.35
1590 2669 2.354821 GGACCGAGTAAATGGCAATCAC 59.645 50.000 0.00 0.00 0.00 3.06
1596 2675 1.217882 CGATGGACCGAGTAAATGGC 58.782 55.000 0.00 0.00 0.00 4.40
1603 2682 2.684001 TTTTATGCGATGGACCGAGT 57.316 45.000 0.00 0.00 0.00 4.18
1608 2687 5.050837 GGCAATTTCATTTTATGCGATGGAC 60.051 40.000 0.00 0.00 37.88 4.02
1611 2690 5.970140 TGGCAATTTCATTTTATGCGATG 57.030 34.783 0.00 0.00 37.88 3.84
1638 2722 0.035317 ACATCACACACGCTGGTCAT 59.965 50.000 0.00 0.00 0.00 3.06
1641 2725 0.179059 TTGACATCACACACGCTGGT 60.179 50.000 0.00 0.00 0.00 4.00
1645 2729 1.535028 TGGAATTGACATCACACACGC 59.465 47.619 0.00 0.00 0.00 5.34
1652 2736 6.705825 CCGTTCTGTATATGGAATTGACATCA 59.294 38.462 0.00 0.00 0.00 3.07
1660 2744 6.665992 TTAGAGCCGTTCTGTATATGGAAT 57.334 37.500 0.00 0.00 36.61 3.01
1675 2764 4.682787 TGTTATCTGTCACATTAGAGCCG 58.317 43.478 0.00 0.00 0.00 5.52
1702 2796 3.118555 TGGATCGACAACAATTCCCGTAT 60.119 43.478 0.00 0.00 0.00 3.06
1704 2798 1.002659 TGGATCGACAACAATTCCCGT 59.997 47.619 0.00 0.00 0.00 5.28
1706 2800 2.432444 TGTGGATCGACAACAATTCCC 58.568 47.619 8.23 0.00 0.00 3.97
1717 2811 3.260632 TCTGGAGACAAAATGTGGATCGA 59.739 43.478 0.00 0.00 42.06 3.59
1718 2812 3.372206 GTCTGGAGACAAAATGTGGATCG 59.628 47.826 1.75 0.00 44.18 3.69
1739 2840 0.399454 ACTCATGCAGCCTGTCTTGT 59.601 50.000 0.00 0.00 0.00 3.16
1759 2860 4.097361 GCCGAACAGGAGGTCCCC 62.097 72.222 0.00 0.00 45.00 4.81
1760 2861 4.097361 GGCCGAACAGGAGGTCCC 62.097 72.222 0.00 0.00 45.00 4.46
1761 2862 4.097361 GGGCCGAACAGGAGGTCC 62.097 72.222 0.00 0.00 45.95 4.46
1762 2863 3.003763 AGGGCCGAACAGGAGGTC 61.004 66.667 0.00 0.00 45.00 3.85
1763 2864 3.003763 GAGGGCCGAACAGGAGGT 61.004 66.667 0.00 0.00 45.00 3.85
1764 2865 2.685380 AGAGGGCCGAACAGGAGG 60.685 66.667 0.00 0.00 45.00 4.30
1765 2866 1.684049 AGAGAGGGCCGAACAGGAG 60.684 63.158 0.00 0.00 45.00 3.69
1767 2868 2.581354 CAGAGAGGGCCGAACAGG 59.419 66.667 0.00 0.00 44.97 4.00
1769 2870 4.069232 CGCAGAGAGGGCCGAACA 62.069 66.667 0.00 0.00 0.00 3.18
1776 2877 2.125350 GAACTGGCGCAGAGAGGG 60.125 66.667 10.83 0.00 35.18 4.30
1777 2878 1.447489 CTGAACTGGCGCAGAGAGG 60.447 63.158 10.83 0.00 35.18 3.69
1778 2879 1.447489 CCTGAACTGGCGCAGAGAG 60.447 63.158 10.83 1.08 35.18 3.20
1779 2880 2.659016 CCTGAACTGGCGCAGAGA 59.341 61.111 10.83 0.00 35.18 3.10
1787 2888 2.360852 CCAGCAGCCCTGAACTGG 60.361 66.667 7.32 7.32 44.64 4.00
1788 2889 3.060615 GCCAGCAGCCCTGAACTG 61.061 66.667 0.00 0.00 44.64 3.16
1789 2890 3.573229 TGCCAGCAGCCCTGAACT 61.573 61.111 0.00 0.00 44.64 3.01
1817 2918 6.535865 TGTAAATGAAAATATACTGTCGGCGT 59.464 34.615 6.85 0.00 0.00 5.68
1818 2919 6.939627 TGTAAATGAAAATATACTGTCGGCG 58.060 36.000 0.00 0.00 0.00 6.46
1819 2920 8.138365 TCTGTAAATGAAAATATACTGTCGGC 57.862 34.615 0.00 0.00 0.00 5.54
1820 2921 9.916397 GTTCTGTAAATGAAAATATACTGTCGG 57.084 33.333 0.00 0.00 0.00 4.79
1821 2922 9.916397 GGTTCTGTAAATGAAAATATACTGTCG 57.084 33.333 0.00 0.00 0.00 4.35
1865 3027 9.624697 TGATGATGTAGAATTTGCAGTTAAAAC 57.375 29.630 0.00 0.00 0.00 2.43
1938 3100 3.741476 GTTGCCTGCCGAGCCTTG 61.741 66.667 0.00 0.00 0.00 3.61
1996 3158 5.411831 AAGCGATGGCAGATCATAGATAA 57.588 39.130 1.50 0.00 43.41 1.75
2069 3235 6.602410 TGGAGAATGAAATGGTGCATTTAA 57.398 33.333 0.00 0.00 43.05 1.52
2070 3236 6.795144 ATGGAGAATGAAATGGTGCATTTA 57.205 33.333 0.00 0.00 43.05 1.40
2071 3237 5.687166 ATGGAGAATGAAATGGTGCATTT 57.313 34.783 0.00 0.00 45.25 2.32
2072 3238 5.424757 CAATGGAGAATGAAATGGTGCATT 58.575 37.500 0.00 0.00 33.18 3.56
2073 3239 4.682320 GCAATGGAGAATGAAATGGTGCAT 60.682 41.667 0.00 0.00 0.00 3.96
2085 3251 4.166725 TGGATAGTTGGAGCAATGGAGAAT 59.833 41.667 0.00 0.00 0.00 2.40
2113 3279 3.537506 TGGGGGTGGTGGAGGAGA 61.538 66.667 0.00 0.00 0.00 3.71
2114 3280 3.330720 GTGGGGGTGGTGGAGGAG 61.331 72.222 0.00 0.00 0.00 3.69
2115 3281 3.864983 GAGTGGGGGTGGTGGAGGA 62.865 68.421 0.00 0.00 0.00 3.71
2116 3282 3.330720 GAGTGGGGGTGGTGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
2117 3283 3.330720 GGAGTGGGGGTGGTGGAG 61.331 72.222 0.00 0.00 0.00 3.86
2118 3284 3.515383 ATGGAGTGGGGGTGGTGGA 62.515 63.158 0.00 0.00 0.00 4.02
2119 3285 2.547595 AATGGAGTGGGGGTGGTGG 61.548 63.158 0.00 0.00 0.00 4.61
2120 3286 1.304381 CAATGGAGTGGGGGTGGTG 60.304 63.158 0.00 0.00 0.00 4.17
2121 3287 3.180282 CAATGGAGTGGGGGTGGT 58.820 61.111 0.00 0.00 0.00 4.16
2122 3288 2.362889 GCAATGGAGTGGGGGTGG 60.363 66.667 0.00 0.00 0.00 4.61
2123 3289 1.978617 GTGCAATGGAGTGGGGGTG 60.979 63.158 0.00 0.00 0.00 4.61
2124 3290 2.017668 TTGTGCAATGGAGTGGGGGT 62.018 55.000 0.00 0.00 0.00 4.95
2125 3291 1.228831 TTGTGCAATGGAGTGGGGG 60.229 57.895 0.00 0.00 0.00 5.40
2126 3292 0.540365 AGTTGTGCAATGGAGTGGGG 60.540 55.000 0.00 0.00 0.00 4.96
2127 3293 0.599558 CAGTTGTGCAATGGAGTGGG 59.400 55.000 0.00 0.00 0.00 4.61
2147 3584 5.518847 CACAGAAAATTTATGGCTGCAGATG 59.481 40.000 20.43 0.00 0.00 2.90
2160 3597 9.372369 TGTTTCGAATTTTACCACAGAAAATTT 57.628 25.926 0.00 0.00 43.26 1.82
2181 3618 4.738740 CGTGACGGAGGAAGTATATGTTTC 59.261 45.833 0.00 0.00 0.00 2.78
2198 3635 0.788391 GTGCCTTCTAAACCGTGACG 59.212 55.000 0.00 0.00 0.00 4.35
2199 3636 1.798813 CTGTGCCTTCTAAACCGTGAC 59.201 52.381 0.00 0.00 0.00 3.67
2203 3640 4.514066 ACTTTAACTGTGCCTTCTAAACCG 59.486 41.667 0.00 0.00 0.00 4.44
2204 3641 6.206498 CAACTTTAACTGTGCCTTCTAAACC 58.794 40.000 0.00 0.00 0.00 3.27
2207 3644 4.024387 CGCAACTTTAACTGTGCCTTCTAA 60.024 41.667 0.00 0.00 0.00 2.10
2208 3645 3.496884 CGCAACTTTAACTGTGCCTTCTA 59.503 43.478 0.00 0.00 0.00 2.10
2210 3647 2.032924 ACGCAACTTTAACTGTGCCTTC 59.967 45.455 0.00 0.00 0.00 3.46
2213 3650 1.753956 CACGCAACTTTAACTGTGCC 58.246 50.000 0.00 0.00 0.00 5.01
2219 3656 4.266502 TGTGAAAATGCACGCAACTTTAAC 59.733 37.500 0.00 3.51 41.63 2.01
2222 3659 2.886081 TGTGAAAATGCACGCAACTTT 58.114 38.095 0.00 0.00 41.63 2.66
2223 3660 2.575694 TGTGAAAATGCACGCAACTT 57.424 40.000 0.00 0.00 41.63 2.66
2225 3662 4.088496 GTCTATTGTGAAAATGCACGCAAC 59.912 41.667 3.46 0.00 41.63 4.17
2226 3663 4.225984 GTCTATTGTGAAAATGCACGCAA 58.774 39.130 3.83 3.83 41.63 4.85
2227 3664 3.251972 TGTCTATTGTGAAAATGCACGCA 59.748 39.130 0.00 0.00 41.63 5.24
2228 3665 3.820689 TGTCTATTGTGAAAATGCACGC 58.179 40.909 0.00 0.00 41.63 5.34
2229 3666 6.746104 TTTTGTCTATTGTGAAAATGCACG 57.254 33.333 0.00 0.00 41.63 5.34
2244 3705 4.676723 GCAATGCGCCCTAAATTTTGTCTA 60.677 41.667 4.18 0.00 32.94 2.59
2246 3707 2.348362 GCAATGCGCCCTAAATTTTGTC 59.652 45.455 4.18 0.00 32.94 3.18
2247 3708 2.289320 TGCAATGCGCCCTAAATTTTGT 60.289 40.909 4.18 0.00 41.33 2.83
2248 3709 2.344950 TGCAATGCGCCCTAAATTTTG 58.655 42.857 4.18 0.00 41.33 2.44
2251 3712 2.985957 AATGCAATGCGCCCTAAATT 57.014 40.000 4.18 0.00 41.33 1.82
2256 3717 2.431782 AGAAATAAATGCAATGCGCCCT 59.568 40.909 4.18 0.00 41.33 5.19
2257 3718 2.825205 AGAAATAAATGCAATGCGCCC 58.175 42.857 4.18 0.00 41.33 6.13
2258 3719 4.610945 ACTAGAAATAAATGCAATGCGCC 58.389 39.130 4.18 0.00 41.33 6.53
2259 3720 5.340667 GCTACTAGAAATAAATGCAATGCGC 59.659 40.000 0.00 0.00 42.89 6.09
2260 3721 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
2292 3753 7.329471 CACACTACGCATGCATATAGAAATAGT 59.671 37.037 19.57 5.11 0.00 2.12
2293 3754 7.542130 TCACACTACGCATGCATATAGAAATAG 59.458 37.037 19.57 6.89 0.00 1.73
2295 3756 6.223120 TCACACTACGCATGCATATAGAAAT 58.777 36.000 19.57 4.78 0.00 2.17
2303 3764 1.064505 GCATTCACACTACGCATGCAT 59.935 47.619 19.57 4.54 40.06 3.96
2304 3765 0.447406 GCATTCACACTACGCATGCA 59.553 50.000 19.57 0.00 40.06 3.96
2305 3766 0.729116 AGCATTCACACTACGCATGC 59.271 50.000 7.91 7.91 40.53 4.06
2306 3767 4.801147 AATAGCATTCACACTACGCATG 57.199 40.909 0.00 0.00 0.00 4.06
2307 3768 5.818136 AAAATAGCATTCACACTACGCAT 57.182 34.783 0.00 0.00 0.00 4.73
2308 3769 5.621197 AAAAATAGCATTCACACTACGCA 57.379 34.783 0.00 0.00 0.00 5.24
2327 3788 7.153985 GCATGCATATAAAGATGGGCTAAAAA 58.846 34.615 14.21 0.00 0.00 1.94
2328 3789 6.570186 CGCATGCATATAAAGATGGGCTAAAA 60.570 38.462 19.57 0.00 0.00 1.52
2329 3790 5.106197 CGCATGCATATAAAGATGGGCTAAA 60.106 40.000 19.57 0.00 0.00 1.85
2330 3791 4.395854 CGCATGCATATAAAGATGGGCTAA 59.604 41.667 19.57 0.00 0.00 3.09
2331 3792 3.940852 CGCATGCATATAAAGATGGGCTA 59.059 43.478 19.57 0.00 0.00 3.93
2332 3793 2.751259 CGCATGCATATAAAGATGGGCT 59.249 45.455 19.57 0.00 0.00 5.19
2333 3794 2.489329 ACGCATGCATATAAAGATGGGC 59.511 45.455 19.57 0.00 33.32 5.36
2334 3795 4.937620 ACTACGCATGCATATAAAGATGGG 59.062 41.667 19.57 0.00 35.49 4.00
2335 3796 5.409520 ACACTACGCATGCATATAAAGATGG 59.590 40.000 19.57 0.00 0.00 3.51
2336 3797 6.146021 TCACACTACGCATGCATATAAAGATG 59.854 38.462 19.57 4.60 0.00 2.90
2337 3798 6.223120 TCACACTACGCATGCATATAAAGAT 58.777 36.000 19.57 0.00 0.00 2.40
2338 3799 5.596845 TCACACTACGCATGCATATAAAGA 58.403 37.500 19.57 4.87 0.00 2.52
2339 3800 5.905480 TCACACTACGCATGCATATAAAG 57.095 39.130 19.57 7.37 0.00 1.85
2340 3801 6.859420 ATTCACACTACGCATGCATATAAA 57.141 33.333 19.57 1.53 0.00 1.40
2341 3802 6.859420 AATTCACACTACGCATGCATATAA 57.141 33.333 19.57 0.86 0.00 0.98
2342 3803 6.859420 AAATTCACACTACGCATGCATATA 57.141 33.333 19.57 5.83 0.00 0.86
2343 3804 5.756195 AAATTCACACTACGCATGCATAT 57.244 34.783 19.57 4.84 0.00 1.78
2344 3805 5.559427 AAAATTCACACTACGCATGCATA 57.441 34.783 19.57 5.77 0.00 3.14
2345 3806 4.439305 AAAATTCACACTACGCATGCAT 57.561 36.364 19.57 4.54 0.00 3.96
2346 3807 3.913548 AAAATTCACACTACGCATGCA 57.086 38.095 19.57 0.00 0.00 3.96
2347 3808 4.262976 GCTAAAAATTCACACTACGCATGC 59.737 41.667 7.91 7.91 0.00 4.06
2348 3809 4.793216 GGCTAAAAATTCACACTACGCATG 59.207 41.667 0.00 0.00 0.00 4.06
2349 3810 4.142469 GGGCTAAAAATTCACACTACGCAT 60.142 41.667 0.00 0.00 0.00 4.73
2350 3811 3.189702 GGGCTAAAAATTCACACTACGCA 59.810 43.478 0.00 0.00 0.00 5.24
2351 3812 3.189702 TGGGCTAAAAATTCACACTACGC 59.810 43.478 0.00 0.00 0.00 4.42
2352 3813 5.354234 AGATGGGCTAAAAATTCACACTACG 59.646 40.000 0.00 0.00 0.00 3.51
2353 3814 6.374333 TGAGATGGGCTAAAAATTCACACTAC 59.626 38.462 0.00 0.00 0.00 2.73
2354 3815 6.480763 TGAGATGGGCTAAAAATTCACACTA 58.519 36.000 0.00 0.00 0.00 2.74
2355 3816 5.324409 TGAGATGGGCTAAAAATTCACACT 58.676 37.500 0.00 0.00 0.00 3.55
2356 3817 5.643379 TGAGATGGGCTAAAAATTCACAC 57.357 39.130 0.00 0.00 0.00 3.82
2357 3818 7.147915 GGTTATGAGATGGGCTAAAAATTCACA 60.148 37.037 0.00 0.00 0.00 3.58
2358 3819 7.147915 TGGTTATGAGATGGGCTAAAAATTCAC 60.148 37.037 0.00 0.00 0.00 3.18
2359 3820 6.894654 TGGTTATGAGATGGGCTAAAAATTCA 59.105 34.615 0.00 0.00 0.00 2.57
2360 3821 7.346751 TGGTTATGAGATGGGCTAAAAATTC 57.653 36.000 0.00 0.00 0.00 2.17
2361 3822 7.732222 TTGGTTATGAGATGGGCTAAAAATT 57.268 32.000 0.00 0.00 0.00 1.82
2362 3823 7.919385 ATTGGTTATGAGATGGGCTAAAAAT 57.081 32.000 0.00 0.00 0.00 1.82
2363 3824 8.278639 TCTATTGGTTATGAGATGGGCTAAAAA 58.721 33.333 0.00 0.00 0.00 1.94
2364 3825 7.811282 TCTATTGGTTATGAGATGGGCTAAAA 58.189 34.615 0.00 0.00 0.00 1.52
2365 3826 7.387265 TCTATTGGTTATGAGATGGGCTAAA 57.613 36.000 0.00 0.00 0.00 1.85
2366 3827 7.574021 ATCTATTGGTTATGAGATGGGCTAA 57.426 36.000 0.00 0.00 0.00 3.09
2367 3828 8.679344 TTATCTATTGGTTATGAGATGGGCTA 57.321 34.615 0.00 0.00 31.25 3.93
2368 3829 7.574021 TTATCTATTGGTTATGAGATGGGCT 57.426 36.000 0.00 0.00 31.25 5.19
2369 3830 8.049117 TGATTATCTATTGGTTATGAGATGGGC 58.951 37.037 0.00 0.00 31.25 5.36
2370 3831 9.388506 GTGATTATCTATTGGTTATGAGATGGG 57.611 37.037 0.00 0.00 31.25 4.00
2371 3832 9.388506 GGTGATTATCTATTGGTTATGAGATGG 57.611 37.037 0.00 0.00 31.25 3.51
2376 3837 9.615660 ACCTAGGTGATTATCTATTGGTTATGA 57.384 33.333 15.42 0.00 0.00 2.15
2377 3838 9.877178 GACCTAGGTGATTATCTATTGGTTATG 57.123 37.037 22.10 0.00 0.00 1.90
2378 3839 9.047947 GGACCTAGGTGATTATCTATTGGTTAT 57.952 37.037 22.10 0.00 0.00 1.89
2379 3840 7.456902 GGGACCTAGGTGATTATCTATTGGTTA 59.543 40.741 22.10 0.00 0.00 2.85
2380 3841 6.272558 GGGACCTAGGTGATTATCTATTGGTT 59.727 42.308 22.10 0.00 0.00 3.67
2381 3842 5.785940 GGGACCTAGGTGATTATCTATTGGT 59.214 44.000 22.10 0.00 0.00 3.67
2382 3843 5.785423 TGGGACCTAGGTGATTATCTATTGG 59.215 44.000 22.10 0.00 0.00 3.16
2383 3844 6.726299 TCTGGGACCTAGGTGATTATCTATTG 59.274 42.308 22.10 0.00 0.00 1.90
2384 3845 6.875469 TCTGGGACCTAGGTGATTATCTATT 58.125 40.000 22.10 0.00 0.00 1.73
2385 3846 6.278239 TCTCTGGGACCTAGGTGATTATCTAT 59.722 42.308 22.10 0.00 0.00 1.98
2386 3847 5.615692 TCTCTGGGACCTAGGTGATTATCTA 59.384 44.000 22.10 0.00 0.00 1.98
2387 3848 4.420552 TCTCTGGGACCTAGGTGATTATCT 59.579 45.833 22.10 0.00 0.00 1.98
2388 3849 4.742012 TCTCTGGGACCTAGGTGATTATC 58.258 47.826 22.10 2.89 0.00 1.75
2389 3850 4.834406 TCTCTGGGACCTAGGTGATTAT 57.166 45.455 22.10 0.00 0.00 1.28
2390 3851 4.620086 TTCTCTGGGACCTAGGTGATTA 57.380 45.455 22.10 1.70 0.00 1.75
2391 3852 3.491766 TTCTCTGGGACCTAGGTGATT 57.508 47.619 22.10 0.00 0.00 2.57
2392 3853 3.715648 ATTCTCTGGGACCTAGGTGAT 57.284 47.619 22.10 0.00 0.00 3.06
2393 3854 3.491766 AATTCTCTGGGACCTAGGTGA 57.508 47.619 22.10 9.45 0.00 4.02
2394 3855 4.019321 TGAAAATTCTCTGGGACCTAGGTG 60.019 45.833 22.10 4.66 0.00 4.00
2395 3856 4.175962 TGAAAATTCTCTGGGACCTAGGT 58.824 43.478 16.26 16.26 0.00 3.08
2396 3857 4.844349 TGAAAATTCTCTGGGACCTAGG 57.156 45.455 7.41 7.41 0.00 3.02
2397 3858 4.944317 GGTTGAAAATTCTCTGGGACCTAG 59.056 45.833 0.00 0.00 0.00 3.02
2398 3859 4.564821 CGGTTGAAAATTCTCTGGGACCTA 60.565 45.833 0.00 0.00 0.00 3.08
2399 3860 3.767711 GGTTGAAAATTCTCTGGGACCT 58.232 45.455 0.00 0.00 0.00 3.85
2400 3861 2.488153 CGGTTGAAAATTCTCTGGGACC 59.512 50.000 0.00 0.00 0.00 4.46
2401 3862 2.095212 GCGGTTGAAAATTCTCTGGGAC 60.095 50.000 0.00 0.00 0.00 4.46
2402 3863 2.159382 GCGGTTGAAAATTCTCTGGGA 58.841 47.619 0.00 0.00 0.00 4.37
2403 3864 1.135689 CGCGGTTGAAAATTCTCTGGG 60.136 52.381 0.00 0.00 0.00 4.45
2404 3865 1.729149 GCGCGGTTGAAAATTCTCTGG 60.729 52.381 8.83 0.00 0.00 3.86
2405 3866 1.606606 GCGCGGTTGAAAATTCTCTG 58.393 50.000 8.83 0.00 0.00 3.35
2406 3867 0.521735 GGCGCGGTTGAAAATTCTCT 59.478 50.000 8.83 0.00 0.00 3.10
2407 3868 0.521735 AGGCGCGGTTGAAAATTCTC 59.478 50.000 8.83 0.00 0.00 2.87
2408 3869 0.958822 AAGGCGCGGTTGAAAATTCT 59.041 45.000 8.83 0.00 0.00 2.40
2409 3870 1.068541 AGAAGGCGCGGTTGAAAATTC 60.069 47.619 8.83 0.00 0.00 2.17
2410 3871 0.958822 AGAAGGCGCGGTTGAAAATT 59.041 45.000 8.83 0.00 0.00 1.82
2420 3881 2.125832 TCCGGTTTAGAAGGCGCG 60.126 61.111 0.00 0.00 0.00 6.86
2421 3882 2.450345 CGTCCGGTTTAGAAGGCGC 61.450 63.158 0.00 0.00 0.00 6.53
2422 3883 0.801067 CTCGTCCGGTTTAGAAGGCG 60.801 60.000 0.00 0.00 0.00 5.52
2423 3884 0.459759 CCTCGTCCGGTTTAGAAGGC 60.460 60.000 0.00 0.00 0.00 4.35
2424 3885 0.893447 ACCTCGTCCGGTTTAGAAGG 59.107 55.000 0.00 4.00 31.94 3.46
2426 3887 2.795329 ACTACCTCGTCCGGTTTAGAA 58.205 47.619 0.00 0.00 38.49 2.10
2427 3888 2.496899 ACTACCTCGTCCGGTTTAGA 57.503 50.000 0.00 0.00 38.49 2.10
2428 3889 4.907879 ATTACTACCTCGTCCGGTTTAG 57.092 45.455 0.00 0.00 38.49 1.85
2432 3893 7.530426 AAAATATATTACTACCTCGTCCGGT 57.470 36.000 0.00 0.00 41.10 5.28
2433 3894 8.084073 TGAAAAATATATTACTACCTCGTCCGG 58.916 37.037 0.00 0.00 0.00 5.14
2434 3895 9.635520 ATGAAAAATATATTACTACCTCGTCCG 57.364 33.333 0.00 0.00 0.00 4.79
2452 3913 9.199645 TGGACATGTGTATGGATTATGAAAAAT 57.800 29.630 1.15 0.00 38.66 1.82
2457 3918 5.069781 TCGTGGACATGTGTATGGATTATGA 59.930 40.000 1.15 0.00 38.66 2.15
2474 3935 4.959596 TGTCTACAGTAAGATCGTGGAC 57.040 45.455 7.08 7.08 40.41 4.02
2479 3940 6.786207 TCTGAACATGTCTACAGTAAGATCG 58.214 40.000 19.57 0.00 0.00 3.69
2506 6115 0.179108 GGACGGCATACACAGAGTCC 60.179 60.000 0.00 0.00 40.85 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.