Multiple sequence alignment - TraesCS4A01G369300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G369300 chr4A 100.000 2830 0 0 1 2830 641479727 641482556 0.000000e+00 5227.0
1 TraesCS4A01G369300 chr4A 83.895 683 73 24 2002 2681 64139971 64139323 4.010000e-173 617.0
2 TraesCS4A01G369300 chr4A 92.683 164 9 3 1 163 641478825 641478664 1.700000e-57 233.0
3 TraesCS4A01G369300 chr5D 88.750 880 49 26 1157 2006 530775793 530774934 0.000000e+00 1031.0
4 TraesCS4A01G369300 chr5D 80.300 533 51 31 650 1146 530776357 530775843 1.250000e-93 353.0
5 TraesCS4A01G369300 chr5D 90.265 113 9 2 1866 1977 24615689 24615800 2.270000e-31 147.0
6 TraesCS4A01G369300 chr5D 95.082 61 3 0 2679 2739 530774945 530774885 2.320000e-16 97.1
7 TraesCS4A01G369300 chr5B 85.260 692 78 18 2003 2678 479036399 479037082 0.000000e+00 691.0
8 TraesCS4A01G369300 chr5B 88.387 310 16 4 1157 1460 670020108 670019813 3.470000e-94 355.0
9 TraesCS4A01G369300 chr5B 83.202 381 19 20 1491 1861 670019470 670019125 9.850000e-80 307.0
10 TraesCS4A01G369300 chr5B 86.093 151 13 7 188 337 670020988 670020845 3.770000e-34 156.0
11 TraesCS4A01G369300 chr5B 81.657 169 11 10 2679 2828 670016886 670016719 3.830000e-24 122.0
12 TraesCS4A01G369300 chr3B 84.012 663 80 20 2021 2678 44752594 44751953 5.180000e-172 614.0
13 TraesCS4A01G369300 chr3B 89.024 246 20 2 413 652 497096577 497096333 5.930000e-77 298.0
14 TraesCS4A01G369300 chr3B 93.252 163 8 3 1 162 42046152 42046312 1.310000e-58 237.0
15 TraesCS4A01G369300 chr6A 82.797 715 80 25 1997 2687 562592314 562593009 1.450000e-167 599.0
16 TraesCS4A01G369300 chr6A 83.113 681 80 23 2001 2678 554107153 554107801 3.140000e-164 588.0
17 TraesCS4A01G369300 chr6A 89.627 241 19 1 417 651 224280605 224280365 4.580000e-78 302.0
18 TraesCS4A01G369300 chr2A 83.333 684 68 22 2003 2681 312638569 312639211 8.730000e-165 590.0
19 TraesCS4A01G369300 chr2A 81.528 720 84 25 2001 2688 505599896 505599194 5.330000e-152 547.0
20 TraesCS4A01G369300 chr2A 89.583 240 20 1 417 651 30698370 30698131 1.650000e-77 300.0
21 TraesCS4A01G369300 chr5A 83.086 674 76 26 2006 2678 675628950 675628314 1.890000e-161 579.0
22 TraesCS4A01G369300 chr5A 79.494 712 67 36 2002 2688 698130683 698130026 1.560000e-117 433.0
23 TraesCS4A01G369300 chr5A 88.889 243 21 1 416 652 385860342 385860100 7.670000e-76 294.0
24 TraesCS4A01G369300 chr7D 82.284 683 79 24 2003 2678 4613497 4614144 1.150000e-153 553.0
25 TraesCS4A01G369300 chr7D 91.429 105 9 0 1866 1970 13688855 13688751 8.170000e-31 145.0
26 TraesCS4A01G369300 chr7D 90.566 106 10 0 1866 1971 365079933 365079828 1.060000e-29 141.0
27 TraesCS4A01G369300 chr7D 89.381 113 6 5 1866 1974 167533230 167533120 1.370000e-28 137.0
28 TraesCS4A01G369300 chr1A 81.650 703 91 19 2002 2678 501019818 501020508 1.480000e-152 549.0
29 TraesCS4A01G369300 chr1A 81.375 698 65 30 2003 2678 244989530 244990184 2.520000e-140 508.0
30 TraesCS4A01G369300 chr1A 88.321 274 28 4 2001 2273 480600913 480601183 2.720000e-85 326.0
31 TraesCS4A01G369300 chr1A 94.231 156 7 2 1 156 522974665 522974818 1.310000e-58 237.0
32 TraesCS4A01G369300 chr1A 92.638 163 9 3 1 162 523368180 523368020 6.100000e-57 231.0
33 TraesCS4A01G369300 chr1A 94.000 150 7 2 13 162 367028173 367028026 2.840000e-55 226.0
34 TraesCS4A01G369300 chr1A 91.509 106 9 0 1866 1971 314432628 314432523 2.270000e-31 147.0
35 TraesCS4A01G369300 chr3A 81.027 701 71 30 2002 2682 475280434 475279776 4.210000e-138 501.0
36 TraesCS4A01G369300 chr3A 89.669 242 19 1 416 651 11631330 11631089 1.270000e-78 303.0
37 TraesCS4A01G369300 chr3A 88.980 245 21 2 413 651 633272280 633272524 5.930000e-77 298.0
38 TraesCS4A01G369300 chr3A 88.664 247 22 1 411 651 597327099 597327345 2.130000e-76 296.0
39 TraesCS4A01G369300 chr4D 83.393 560 65 18 2128 2678 81172873 81172333 7.040000e-136 494.0
40 TraesCS4A01G369300 chr4D 90.654 107 9 1 1866 1971 226455148 226455042 1.060000e-29 141.0
41 TraesCS4A01G369300 chr7B 80.265 679 79 29 2001 2676 114412112 114412738 7.140000e-126 460.0
42 TraesCS4A01G369300 chr7B 92.638 163 9 3 1 162 466711369 466711209 6.100000e-57 231.0
43 TraesCS4A01G369300 chr7A 87.108 287 31 6 1989 2273 127663508 127663790 1.260000e-83 320.0
44 TraesCS4A01G369300 chr7A 90.833 240 17 3 417 651 663964278 663964039 1.640000e-82 316.0
45 TraesCS4A01G369300 chr7A 88.189 254 23 4 406 652 162784086 162783833 2.130000e-76 296.0
46 TraesCS4A01G369300 chr7A 93.827 162 8 2 1 162 656175047 656174888 2.820000e-60 243.0
47 TraesCS4A01G369300 chr1D 94.410 161 8 1 1 161 285110250 285110091 2.180000e-61 246.0
48 TraesCS4A01G369300 chr1D 88.596 114 9 3 1866 1977 302891793 302891682 4.920000e-28 135.0
49 TraesCS4A01G369300 chr6B 93.210 162 9 1 1 162 138299100 138298941 1.310000e-58 237.0
50 TraesCS4A01G369300 chr1B 89.815 108 9 2 1866 1971 397836333 397836440 1.370000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G369300 chr4A 641479727 641482556 2829 False 5227.0 5227 100.00000 1 2830 1 chr4A.!!$F1 2829
1 TraesCS4A01G369300 chr4A 64139323 64139971 648 True 617.0 617 83.89500 2002 2681 1 chr4A.!!$R1 679
2 TraesCS4A01G369300 chr5D 530774885 530776357 1472 True 493.7 1031 88.04400 650 2739 3 chr5D.!!$R1 2089
3 TraesCS4A01G369300 chr5B 479036399 479037082 683 False 691.0 691 85.26000 2003 2678 1 chr5B.!!$F1 675
4 TraesCS4A01G369300 chr5B 670016719 670020988 4269 True 235.0 355 84.83475 188 2828 4 chr5B.!!$R1 2640
5 TraesCS4A01G369300 chr3B 44751953 44752594 641 True 614.0 614 84.01200 2021 2678 1 chr3B.!!$R1 657
6 TraesCS4A01G369300 chr6A 562592314 562593009 695 False 599.0 599 82.79700 1997 2687 1 chr6A.!!$F2 690
7 TraesCS4A01G369300 chr6A 554107153 554107801 648 False 588.0 588 83.11300 2001 2678 1 chr6A.!!$F1 677
8 TraesCS4A01G369300 chr2A 312638569 312639211 642 False 590.0 590 83.33300 2003 2681 1 chr2A.!!$F1 678
9 TraesCS4A01G369300 chr2A 505599194 505599896 702 True 547.0 547 81.52800 2001 2688 1 chr2A.!!$R2 687
10 TraesCS4A01G369300 chr5A 675628314 675628950 636 True 579.0 579 83.08600 2006 2678 1 chr5A.!!$R2 672
11 TraesCS4A01G369300 chr5A 698130026 698130683 657 True 433.0 433 79.49400 2002 2688 1 chr5A.!!$R3 686
12 TraesCS4A01G369300 chr7D 4613497 4614144 647 False 553.0 553 82.28400 2003 2678 1 chr7D.!!$F1 675
13 TraesCS4A01G369300 chr1A 501019818 501020508 690 False 549.0 549 81.65000 2002 2678 1 chr1A.!!$F3 676
14 TraesCS4A01G369300 chr1A 244989530 244990184 654 False 508.0 508 81.37500 2003 2678 1 chr1A.!!$F1 675
15 TraesCS4A01G369300 chr3A 475279776 475280434 658 True 501.0 501 81.02700 2002 2682 1 chr3A.!!$R2 680
16 TraesCS4A01G369300 chr4D 81172333 81172873 540 True 494.0 494 83.39300 2128 2678 1 chr4D.!!$R1 550
17 TraesCS4A01G369300 chr7B 114412112 114412738 626 False 460.0 460 80.26500 2001 2676 1 chr7B.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.037605 CCACGTACTTGGTCCAGGAC 60.038 60.0 11.7 11.7 0.00 3.85 F
1051 1186 0.030297 AGATGGGGTCTCTGATGGCT 60.030 55.0 0.0 0.0 28.45 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 1228 0.529773 CCGTGTGTGTAGCCGCATAT 60.530 55.000 0.00 0.0 32.83 1.78 R
2152 4213 1.002868 GTGGCATGCTGACTGGACT 60.003 57.895 18.92 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.794270 CCAATCGGCGTACAGTGG 58.206 61.111 6.85 2.46 0.00 4.00
18 19 1.813753 CCAATCGGCGTACAGTGGG 60.814 63.158 6.85 0.00 0.00 4.61
19 20 2.125269 AATCGGCGTACAGTGGGC 60.125 61.111 6.85 0.00 0.00 5.36
20 21 3.675619 AATCGGCGTACAGTGGGCC 62.676 63.158 6.85 10.99 43.42 5.80
24 25 4.065281 GCGTACAGTGGGCCGACT 62.065 66.667 15.64 15.64 0.00 4.18
26 27 2.264794 GTACAGTGGGCCGACTGG 59.735 66.667 40.13 26.60 46.56 4.00
27 28 3.000819 TACAGTGGGCCGACTGGG 61.001 66.667 40.13 23.99 46.56 4.45
34 35 3.728373 GGCCGACTGGGGTCCAAT 61.728 66.667 0.00 0.00 39.15 3.16
35 36 2.124695 GCCGACTGGGGTCCAATC 60.125 66.667 0.00 0.00 39.15 2.67
38 39 2.124695 GACTGGGGTCCAATCGGC 60.125 66.667 0.00 0.00 36.53 5.54
39 40 3.699134 GACTGGGGTCCAATCGGCC 62.699 68.421 0.00 0.00 36.53 6.13
40 41 3.727258 CTGGGGTCCAATCGGCCA 61.727 66.667 2.24 0.00 30.80 5.36
41 42 3.704231 CTGGGGTCCAATCGGCCAG 62.704 68.421 2.24 0.00 34.79 4.85
43 44 4.424711 GGGTCCAATCGGCCAGCA 62.425 66.667 2.24 0.00 31.95 4.41
44 45 2.825836 GGTCCAATCGGCCAGCAG 60.826 66.667 2.24 0.00 0.00 4.24
45 46 3.512516 GTCCAATCGGCCAGCAGC 61.513 66.667 2.24 0.00 42.60 5.25
46 47 4.032452 TCCAATCGGCCAGCAGCA 62.032 61.111 2.24 0.00 46.50 4.41
47 48 3.515286 CCAATCGGCCAGCAGCAG 61.515 66.667 2.24 0.00 46.50 4.24
48 49 3.515286 CAATCGGCCAGCAGCAGG 61.515 66.667 2.24 0.00 46.50 4.85
62 63 2.989639 CAGGCCGACTGGATCCAA 59.010 61.111 17.00 0.00 43.70 3.53
63 64 1.528824 CAGGCCGACTGGATCCAAT 59.471 57.895 17.00 5.36 43.70 3.16
64 65 0.533755 CAGGCCGACTGGATCCAATC 60.534 60.000 17.00 15.09 43.70 2.67
65 66 1.595382 GGCCGACTGGATCCAATCG 60.595 63.158 33.02 33.02 43.95 3.34
67 68 4.033894 CGACTGGATCCAATCGGC 57.966 61.111 32.52 15.78 41.20 5.54
68 69 1.595382 CGACTGGATCCAATCGGCC 60.595 63.158 32.52 6.34 41.20 6.13
69 70 1.526887 GACTGGATCCAATCGGCCA 59.473 57.895 17.00 0.00 0.00 5.36
70 71 4.469883 CTGGATCCAATCGGCCAG 57.530 61.111 17.00 0.00 41.62 4.85
71 72 1.895707 CTGGATCCAATCGGCCAGC 60.896 63.158 17.00 0.00 41.17 4.85
72 73 2.192979 GGATCCAATCGGCCAGCA 59.807 61.111 6.95 0.00 0.00 4.41
73 74 1.895707 GGATCCAATCGGCCAGCAG 60.896 63.158 6.95 0.00 0.00 4.24
74 75 1.153086 GATCCAATCGGCCAGCAGT 60.153 57.895 2.24 0.00 0.00 4.40
75 76 0.106708 GATCCAATCGGCCAGCAGTA 59.893 55.000 2.24 0.00 0.00 2.74
76 77 0.107456 ATCCAATCGGCCAGCAGTAG 59.893 55.000 2.24 0.00 0.00 2.57
77 78 1.524621 CCAATCGGCCAGCAGTAGG 60.525 63.158 2.24 0.00 0.00 3.18
83 84 3.775654 GCCAGCAGTAGGCCGACT 61.776 66.667 13.44 13.44 46.50 4.18
85 86 2.185350 CAGCAGTAGGCCGACTGG 59.815 66.667 37.15 23.12 45.85 4.00
86 87 3.077556 AGCAGTAGGCCGACTGGG 61.078 66.667 37.15 20.42 45.85 4.45
87 88 3.391382 GCAGTAGGCCGACTGGGT 61.391 66.667 37.15 8.79 45.85 4.51
88 89 2.056223 GCAGTAGGCCGACTGGGTA 61.056 63.158 37.15 4.82 45.85 3.69
89 90 1.400530 GCAGTAGGCCGACTGGGTAT 61.401 60.000 37.15 7.69 45.85 2.73
90 91 1.120530 CAGTAGGCCGACTGGGTATT 58.879 55.000 31.99 1.96 42.68 1.89
91 92 2.313317 CAGTAGGCCGACTGGGTATTA 58.687 52.381 31.99 0.00 42.68 0.98
92 93 2.897969 CAGTAGGCCGACTGGGTATTAT 59.102 50.000 31.99 0.47 42.68 1.28
93 94 3.323979 CAGTAGGCCGACTGGGTATTATT 59.676 47.826 31.99 0.00 42.68 1.40
94 95 3.971971 AGTAGGCCGACTGGGTATTATTT 59.028 43.478 18.68 0.00 38.44 1.40
95 96 3.945640 AGGCCGACTGGGTATTATTTT 57.054 42.857 0.00 0.00 38.44 1.82
96 97 4.245251 AGGCCGACTGGGTATTATTTTT 57.755 40.909 0.00 0.00 38.44 1.94
97 98 5.376756 AGGCCGACTGGGTATTATTTTTA 57.623 39.130 0.00 0.00 38.44 1.52
98 99 5.757988 AGGCCGACTGGGTATTATTTTTAA 58.242 37.500 0.00 0.00 38.44 1.52
99 100 6.189133 AGGCCGACTGGGTATTATTTTTAAA 58.811 36.000 0.00 0.00 38.44 1.52
100 101 6.664384 AGGCCGACTGGGTATTATTTTTAAAA 59.336 34.615 0.00 0.00 38.44 1.52
101 102 7.178805 AGGCCGACTGGGTATTATTTTTAAAAA 59.821 33.333 15.38 15.38 38.44 1.94
178 179 4.769345 AAAAATCTGGCCTGTTTTCCAA 57.231 36.364 16.34 0.00 30.98 3.53
179 180 4.769345 AAAATCTGGCCTGTTTTCCAAA 57.231 36.364 16.34 0.00 30.98 3.28
180 181 4.980339 AAATCTGGCCTGTTTTCCAAAT 57.020 36.364 3.32 0.00 30.98 2.32
181 182 6.432403 AAAATCTGGCCTGTTTTCCAAATA 57.568 33.333 16.34 0.00 30.98 1.40
182 183 6.625532 AAATCTGGCCTGTTTTCCAAATAT 57.374 33.333 3.32 0.00 30.98 1.28
183 184 6.625532 AATCTGGCCTGTTTTCCAAATATT 57.374 33.333 3.32 0.00 30.98 1.28
184 185 5.404466 TCTGGCCTGTTTTCCAAATATTG 57.596 39.130 3.32 0.00 30.98 1.90
185 186 3.934579 CTGGCCTGTTTTCCAAATATTGC 59.065 43.478 3.32 0.00 30.98 3.56
186 187 3.582208 TGGCCTGTTTTCCAAATATTGCT 59.418 39.130 3.32 0.00 0.00 3.91
191 192 6.258507 GCCTGTTTTCCAAATATTGCTAATGG 59.741 38.462 0.00 0.00 0.00 3.16
200 201 0.179103 ATTGCTAATGGCTTTGGCGC 60.179 50.000 14.95 0.00 44.25 6.53
208 209 3.047877 GCTTTGGCGCCACGTACT 61.048 61.111 32.95 0.00 0.00 2.73
210 211 1.206578 CTTTGGCGCCACGTACTTG 59.793 57.895 32.95 10.25 0.00 3.16
211 212 2.182614 CTTTGGCGCCACGTACTTGG 62.183 60.000 32.95 13.94 39.98 3.61
212 213 2.944409 TTTGGCGCCACGTACTTGGT 62.944 55.000 32.95 0.00 39.09 3.67
213 214 3.116531 GGCGCCACGTACTTGGTC 61.117 66.667 24.80 11.19 39.09 4.02
214 215 3.116531 GCGCCACGTACTTGGTCC 61.117 66.667 18.76 7.34 39.09 4.46
217 218 1.375523 GCCACGTACTTGGTCCAGG 60.376 63.158 18.76 0.00 39.09 4.45
218 219 1.823169 GCCACGTACTTGGTCCAGGA 61.823 60.000 18.76 0.00 39.09 3.86
219 220 0.037605 CCACGTACTTGGTCCAGGAC 60.038 60.000 11.70 11.70 0.00 3.85
220 221 0.966920 CACGTACTTGGTCCAGGACT 59.033 55.000 19.57 1.74 32.47 3.85
221 222 1.343465 CACGTACTTGGTCCAGGACTT 59.657 52.381 19.57 4.39 32.47 3.01
222 223 2.044758 ACGTACTTGGTCCAGGACTTT 58.955 47.619 19.57 4.05 32.47 2.66
223 224 2.436911 ACGTACTTGGTCCAGGACTTTT 59.563 45.455 19.57 4.39 32.47 2.27
224 225 3.118149 ACGTACTTGGTCCAGGACTTTTT 60.118 43.478 19.57 4.74 32.47 1.94
225 226 3.250040 CGTACTTGGTCCAGGACTTTTTG 59.750 47.826 19.57 8.04 32.47 2.44
226 227 2.031870 ACTTGGTCCAGGACTTTTTGC 58.968 47.619 19.57 1.93 32.47 3.68
227 228 1.001378 CTTGGTCCAGGACTTTTTGCG 60.001 52.381 19.57 0.00 32.47 4.85
228 229 0.181587 TGGTCCAGGACTTTTTGCGA 59.818 50.000 19.57 0.00 32.47 5.10
229 230 0.875059 GGTCCAGGACTTTTTGCGAG 59.125 55.000 19.57 0.00 32.47 5.03
259 260 1.372997 GGATGACGACGCCGCATAT 60.373 57.895 0.00 0.00 39.95 1.78
269 270 1.882625 GCCGCATATGCACTGACGA 60.883 57.895 26.52 0.00 42.21 4.20
271 272 1.490693 CCGCATATGCACTGACGACC 61.491 60.000 26.52 0.00 42.21 4.79
272 273 0.528466 CGCATATGCACTGACGACCT 60.528 55.000 26.52 0.00 42.21 3.85
276 277 0.324368 TATGCACTGACGACCTCCCT 60.324 55.000 0.00 0.00 0.00 4.20
278 279 2.262915 CACTGACGACCTCCCTGC 59.737 66.667 0.00 0.00 0.00 4.85
280 281 2.279069 ACTGACGACCTCCCTGCAG 61.279 63.158 6.78 6.78 0.00 4.41
312 314 2.237066 CGCCGCTGATAACGATGCA 61.237 57.895 0.00 0.00 0.00 3.96
313 315 1.276844 GCCGCTGATAACGATGCAC 59.723 57.895 0.00 0.00 0.00 4.57
350 352 8.988546 TCTAATCTAGTCTAGCTTCAGAATGT 57.011 34.615 1.60 0.00 37.40 2.71
353 355 8.760980 AATCTAGTCTAGCTTCAGAATGTACT 57.239 34.615 1.60 0.00 37.40 2.73
354 356 7.795482 TCTAGTCTAGCTTCAGAATGTACTC 57.205 40.000 1.60 0.00 37.40 2.59
355 357 5.493133 AGTCTAGCTTCAGAATGTACTCG 57.507 43.478 0.00 0.00 37.40 4.18
356 358 5.186942 AGTCTAGCTTCAGAATGTACTCGA 58.813 41.667 0.00 0.00 37.40 4.04
363 440 5.677344 GCTTCAGAATGTACTCGATCTGTCA 60.677 44.000 10.39 0.58 40.11 3.58
368 445 8.801246 TCAGAATGTACTCGATCTGTCATCGAA 61.801 40.741 10.39 0.00 42.89 3.71
387 464 2.732412 AGTCACCGATCTTGTGAGTG 57.268 50.000 17.11 4.79 43.07 3.51
404 496 1.204941 AGTGCGTCTGGTAGGAACATC 59.795 52.381 0.00 0.00 0.00 3.06
408 500 2.034305 GCGTCTGGTAGGAACATCGTAT 59.966 50.000 0.00 0.00 0.00 3.06
409 501 3.852572 GCGTCTGGTAGGAACATCGTATC 60.853 52.174 0.00 0.00 0.00 2.24
411 503 4.201980 CGTCTGGTAGGAACATCGTATCAA 60.202 45.833 0.00 0.00 28.85 2.57
412 504 5.657474 GTCTGGTAGGAACATCGTATCAAA 58.343 41.667 0.00 0.00 28.85 2.69
413 505 6.281405 GTCTGGTAGGAACATCGTATCAAAT 58.719 40.000 0.00 0.00 28.85 2.32
416 508 6.826668 TGGTAGGAACATCGTATCAAATGAT 58.173 36.000 1.01 1.01 38.51 2.45
417 509 7.958088 TGGTAGGAACATCGTATCAAATGATA 58.042 34.615 0.00 0.00 36.05 2.15
432 524 6.914665 TCAAATGATACTCCCTCCATTTCAT 58.085 36.000 0.00 0.00 37.18 2.57
433 525 8.044574 TCAAATGATACTCCCTCCATTTCATA 57.955 34.615 0.00 0.00 37.18 2.15
434 526 8.501904 TCAAATGATACTCCCTCCATTTCATAA 58.498 33.333 0.00 0.00 37.18 1.90
435 527 9.305555 CAAATGATACTCCCTCCATTTCATAAT 57.694 33.333 0.00 0.00 37.18 1.28
436 528 8.874744 AATGATACTCCCTCCATTTCATAATG 57.125 34.615 0.00 0.00 40.70 1.90
437 529 7.392766 TGATACTCCCTCCATTTCATAATGT 57.607 36.000 0.00 0.00 39.62 2.71
438 530 8.504811 TGATACTCCCTCCATTTCATAATGTA 57.495 34.615 0.00 0.00 39.62 2.29
439 531 8.597167 TGATACTCCCTCCATTTCATAATGTAG 58.403 37.037 0.00 0.00 39.62 2.74
440 532 6.831664 ACTCCCTCCATTTCATAATGTAGT 57.168 37.500 0.00 0.00 39.62 2.73
441 533 7.931015 ACTCCCTCCATTTCATAATGTAGTA 57.069 36.000 0.00 0.00 39.62 1.82
442 534 7.736893 ACTCCCTCCATTTCATAATGTAGTAC 58.263 38.462 0.00 0.00 39.62 2.73
443 535 7.569111 ACTCCCTCCATTTCATAATGTAGTACT 59.431 37.037 0.00 0.00 39.62 2.73
444 536 8.331931 TCCCTCCATTTCATAATGTAGTACTT 57.668 34.615 0.00 0.00 39.62 2.24
445 537 8.778059 TCCCTCCATTTCATAATGTAGTACTTT 58.222 33.333 0.00 4.33 39.62 2.66
446 538 9.057089 CCCTCCATTTCATAATGTAGTACTTTC 57.943 37.037 0.00 0.00 39.62 2.62
447 539 9.838339 CCTCCATTTCATAATGTAGTACTTTCT 57.162 33.333 0.00 0.00 39.62 2.52
456 548 9.613957 CATAATGTAGTACTTTCTCTATCCACG 57.386 37.037 0.00 0.00 0.00 4.94
457 549 7.642082 AATGTAGTACTTTCTCTATCCACGT 57.358 36.000 0.00 0.00 0.00 4.49
458 550 6.432607 TGTAGTACTTTCTCTATCCACGTG 57.567 41.667 9.08 9.08 0.00 4.49
459 551 5.942236 TGTAGTACTTTCTCTATCCACGTGT 59.058 40.000 15.65 0.00 0.00 4.49
460 552 5.979288 AGTACTTTCTCTATCCACGTGTT 57.021 39.130 15.65 4.05 0.00 3.32
461 553 6.342338 AGTACTTTCTCTATCCACGTGTTT 57.658 37.500 15.65 3.66 0.00 2.83
462 554 6.388278 AGTACTTTCTCTATCCACGTGTTTC 58.612 40.000 15.65 0.00 0.00 2.78
463 555 5.209818 ACTTTCTCTATCCACGTGTTTCA 57.790 39.130 15.65 0.00 0.00 2.69
464 556 5.607477 ACTTTCTCTATCCACGTGTTTCAA 58.393 37.500 15.65 0.00 0.00 2.69
465 557 5.465724 ACTTTCTCTATCCACGTGTTTCAAC 59.534 40.000 15.65 0.00 0.00 3.18
466 558 4.866508 TCTCTATCCACGTGTTTCAACT 57.133 40.909 15.65 0.00 0.00 3.16
467 559 5.209818 TCTCTATCCACGTGTTTCAACTT 57.790 39.130 15.65 0.00 0.00 2.66
468 560 5.607477 TCTCTATCCACGTGTTTCAACTTT 58.393 37.500 15.65 0.00 0.00 2.66
469 561 5.465390 TCTCTATCCACGTGTTTCAACTTTG 59.535 40.000 15.65 0.00 0.00 2.77
470 562 5.361427 TCTATCCACGTGTTTCAACTTTGA 58.639 37.500 15.65 0.28 34.92 2.69
471 563 3.750639 TCCACGTGTTTCAACTTTGAC 57.249 42.857 15.65 0.00 36.83 3.18
472 564 2.420722 TCCACGTGTTTCAACTTTGACC 59.579 45.455 15.65 0.00 36.83 4.02
473 565 2.436670 CACGTGTTTCAACTTTGACCG 58.563 47.619 7.58 0.00 36.83 4.79
474 566 2.078392 ACGTGTTTCAACTTTGACCGT 58.922 42.857 0.00 0.00 36.83 4.83
475 567 3.062369 CACGTGTTTCAACTTTGACCGTA 59.938 43.478 7.58 0.00 36.83 4.02
476 568 3.683822 ACGTGTTTCAACTTTGACCGTAA 59.316 39.130 0.00 0.00 36.83 3.18
477 569 4.153835 ACGTGTTTCAACTTTGACCGTAAA 59.846 37.500 0.00 0.00 36.83 2.01
478 570 5.163733 ACGTGTTTCAACTTTGACCGTAAAT 60.164 36.000 0.00 0.00 36.83 1.40
479 571 5.740099 CGTGTTTCAACTTTGACCGTAAATT 59.260 36.000 0.00 0.00 36.83 1.82
480 572 6.251801 CGTGTTTCAACTTTGACCGTAAATTT 59.748 34.615 0.00 0.00 36.83 1.82
481 573 7.428761 CGTGTTTCAACTTTGACCGTAAATTTA 59.571 33.333 0.00 0.00 36.83 1.40
482 574 9.074443 GTGTTTCAACTTTGACCGTAAATTTAA 57.926 29.630 0.00 0.00 36.83 1.52
483 575 9.074443 TGTTTCAACTTTGACCGTAAATTTAAC 57.926 29.630 0.00 0.00 36.83 2.01
484 576 9.292846 GTTTCAACTTTGACCGTAAATTTAACT 57.707 29.630 0.00 0.00 36.83 2.24
493 585 9.715121 TTGACCGTAAATTTAACTATCAAGACT 57.285 29.630 0.00 0.00 0.00 3.24
494 586 9.146984 TGACCGTAAATTTAACTATCAAGACTG 57.853 33.333 0.00 0.00 0.00 3.51
495 587 9.362539 GACCGTAAATTTAACTATCAAGACTGA 57.637 33.333 0.00 0.00 35.56 3.41
496 588 9.886132 ACCGTAAATTTAACTATCAAGACTGAT 57.114 29.630 0.00 0.00 44.71 2.90
501 593 6.662414 TTTAACTATCAAGACTGATTGCGG 57.338 37.500 0.00 0.00 39.36 5.69
502 594 2.555199 ACTATCAAGACTGATTGCGGC 58.445 47.619 0.00 0.00 39.36 6.53
503 595 2.093500 ACTATCAAGACTGATTGCGGCA 60.093 45.455 0.00 0.00 39.36 5.69
504 596 1.376543 ATCAAGACTGATTGCGGCAG 58.623 50.000 1.67 0.00 39.36 4.85
505 597 0.674581 TCAAGACTGATTGCGGCAGG 60.675 55.000 1.67 0.00 37.69 4.85
506 598 0.674581 CAAGACTGATTGCGGCAGGA 60.675 55.000 1.67 0.00 37.69 3.86
507 599 0.392193 AAGACTGATTGCGGCAGGAG 60.392 55.000 1.67 3.18 37.69 3.69
508 600 2.437359 ACTGATTGCGGCAGGAGC 60.437 61.111 1.67 0.00 37.69 4.70
509 601 2.437180 CTGATTGCGGCAGGAGCA 60.437 61.111 1.67 0.00 44.61 4.26
514 606 3.776158 TGCGGCAGGAGCAAAAAT 58.224 50.000 0.00 0.00 44.61 1.82
515 607 1.586028 TGCGGCAGGAGCAAAAATC 59.414 52.632 0.00 0.00 44.61 2.17
516 608 1.177895 TGCGGCAGGAGCAAAAATCA 61.178 50.000 0.00 0.00 44.61 2.57
517 609 0.174162 GCGGCAGGAGCAAAAATCAT 59.826 50.000 0.00 0.00 44.61 2.45
518 610 1.405105 GCGGCAGGAGCAAAAATCATA 59.595 47.619 0.00 0.00 44.61 2.15
519 611 2.035066 GCGGCAGGAGCAAAAATCATAT 59.965 45.455 0.00 0.00 44.61 1.78
520 612 3.854784 GCGGCAGGAGCAAAAATCATATC 60.855 47.826 0.00 0.00 44.61 1.63
521 613 3.316029 CGGCAGGAGCAAAAATCATATCA 59.684 43.478 0.00 0.00 44.61 2.15
522 614 4.556104 CGGCAGGAGCAAAAATCATATCAG 60.556 45.833 0.00 0.00 44.61 2.90
523 615 4.340381 GGCAGGAGCAAAAATCATATCAGT 59.660 41.667 0.00 0.00 44.61 3.41
524 616 5.279384 GCAGGAGCAAAAATCATATCAGTG 58.721 41.667 0.00 0.00 41.58 3.66
525 617 5.066893 GCAGGAGCAAAAATCATATCAGTGA 59.933 40.000 0.00 0.00 41.58 3.41
526 618 6.405065 GCAGGAGCAAAAATCATATCAGTGAA 60.405 38.462 0.00 0.00 41.58 3.18
527 619 7.683704 GCAGGAGCAAAAATCATATCAGTGAAT 60.684 37.037 0.00 0.00 41.58 2.57
528 620 8.195436 CAGGAGCAAAAATCATATCAGTGAATT 58.805 33.333 0.00 0.00 0.00 2.17
529 621 8.411683 AGGAGCAAAAATCATATCAGTGAATTC 58.588 33.333 0.00 0.00 0.00 2.17
530 622 7.377928 GGAGCAAAAATCATATCAGTGAATTCG 59.622 37.037 0.00 0.00 0.00 3.34
531 623 7.765307 AGCAAAAATCATATCAGTGAATTCGT 58.235 30.769 0.00 0.00 0.00 3.85
532 624 8.892723 AGCAAAAATCATATCAGTGAATTCGTA 58.107 29.630 0.00 0.00 0.00 3.43
533 625 9.669353 GCAAAAATCATATCAGTGAATTCGTAT 57.331 29.630 0.00 0.00 0.00 3.06
566 658 9.459640 GAAGTTTTTAATTATATTTCTCCCGCC 57.540 33.333 0.00 0.00 0.00 6.13
567 659 7.645402 AGTTTTTAATTATATTTCTCCCGCCG 58.355 34.615 0.00 0.00 0.00 6.46
568 660 5.616488 TTTAATTATATTTCTCCCGCCGC 57.384 39.130 0.00 0.00 0.00 6.53
569 661 2.851263 ATTATATTTCTCCCGCCGCA 57.149 45.000 0.00 0.00 0.00 5.69
570 662 2.163818 TTATATTTCTCCCGCCGCAG 57.836 50.000 0.00 0.00 0.00 5.18
571 663 1.045407 TATATTTCTCCCGCCGCAGT 58.955 50.000 0.00 0.00 0.00 4.40
572 664 0.180406 ATATTTCTCCCGCCGCAGTT 59.820 50.000 0.00 0.00 0.00 3.16
573 665 0.742990 TATTTCTCCCGCCGCAGTTG 60.743 55.000 0.00 0.00 0.00 3.16
574 666 2.463589 ATTTCTCCCGCCGCAGTTGA 62.464 55.000 0.00 0.00 0.00 3.18
575 667 2.463589 TTTCTCCCGCCGCAGTTGAT 62.464 55.000 0.00 0.00 0.00 2.57
576 668 2.852495 TTCTCCCGCCGCAGTTGATC 62.852 60.000 0.00 0.00 0.00 2.92
577 669 3.376935 CTCCCGCCGCAGTTGATCT 62.377 63.158 0.00 0.00 0.00 2.75
578 670 2.436646 CCCGCCGCAGTTGATCTT 60.437 61.111 0.00 0.00 0.00 2.40
579 671 2.753966 CCCGCCGCAGTTGATCTTG 61.754 63.158 0.00 0.00 0.00 3.02
580 672 2.034879 CCGCCGCAGTTGATCTTGT 61.035 57.895 0.00 0.00 0.00 3.16
581 673 1.577328 CCGCCGCAGTTGATCTTGTT 61.577 55.000 0.00 0.00 0.00 2.83
582 674 0.453282 CGCCGCAGTTGATCTTGTTG 60.453 55.000 0.00 0.00 0.00 3.33
583 675 0.874390 GCCGCAGTTGATCTTGTTGA 59.126 50.000 0.00 0.00 0.00 3.18
584 676 1.470098 GCCGCAGTTGATCTTGTTGAT 59.530 47.619 0.00 0.00 38.27 2.57
585 677 2.095059 GCCGCAGTTGATCTTGTTGATT 60.095 45.455 0.00 0.00 35.14 2.57
586 678 3.126858 GCCGCAGTTGATCTTGTTGATTA 59.873 43.478 0.00 0.00 35.14 1.75
587 679 4.379394 GCCGCAGTTGATCTTGTTGATTAA 60.379 41.667 0.00 0.00 35.14 1.40
588 680 5.698832 CCGCAGTTGATCTTGTTGATTAAA 58.301 37.500 0.00 0.00 33.37 1.52
589 681 6.324819 CCGCAGTTGATCTTGTTGATTAAAT 58.675 36.000 0.00 0.00 33.37 1.40
590 682 6.808212 CCGCAGTTGATCTTGTTGATTAAATT 59.192 34.615 0.00 0.00 33.37 1.82
591 683 7.329226 CCGCAGTTGATCTTGTTGATTAAATTT 59.671 33.333 0.00 0.00 33.37 1.82
592 684 9.340695 CGCAGTTGATCTTGTTGATTAAATTTA 57.659 29.630 0.00 0.00 33.37 1.40
612 704 7.611213 ATTTATGGTCAAAGTTAGACTTCGG 57.389 36.000 0.00 0.00 37.47 4.30
613 705 3.396260 TGGTCAAAGTTAGACTTCGGG 57.604 47.619 0.00 0.00 37.47 5.14
614 706 2.967201 TGGTCAAAGTTAGACTTCGGGA 59.033 45.455 0.00 0.00 37.47 5.14
615 707 3.388676 TGGTCAAAGTTAGACTTCGGGAA 59.611 43.478 0.00 0.00 37.47 3.97
616 708 4.141665 TGGTCAAAGTTAGACTTCGGGAAA 60.142 41.667 0.00 0.00 37.47 3.13
617 709 4.212847 GGTCAAAGTTAGACTTCGGGAAAC 59.787 45.833 0.00 0.00 37.47 2.78
618 710 4.053295 TCAAAGTTAGACTTCGGGAAACG 58.947 43.478 0.00 0.00 37.47 3.60
619 711 2.075979 AGTTAGACTTCGGGAAACGC 57.924 50.000 0.00 0.00 43.86 4.84
620 712 0.712222 GTTAGACTTCGGGAAACGCG 59.288 55.000 3.53 3.53 43.86 6.01
621 713 0.388907 TTAGACTTCGGGAAACGCGG 60.389 55.000 12.47 0.00 43.86 6.46
622 714 2.216750 TAGACTTCGGGAAACGCGGG 62.217 60.000 12.47 0.00 43.86 6.13
625 717 4.708386 TTCGGGAAACGCGGGCAT 62.708 61.111 12.47 0.00 43.86 4.40
626 718 3.312285 TTCGGGAAACGCGGGCATA 62.312 57.895 12.47 0.00 43.86 3.14
627 719 3.569690 CGGGAAACGCGGGCATAC 61.570 66.667 12.47 0.00 36.19 2.39
628 720 2.124860 GGGAAACGCGGGCATACT 60.125 61.111 12.47 0.00 0.00 2.12
629 721 1.144496 GGGAAACGCGGGCATACTA 59.856 57.895 12.47 0.00 0.00 1.82
630 722 0.250166 GGGAAACGCGGGCATACTAT 60.250 55.000 12.47 0.00 0.00 2.12
631 723 1.001181 GGGAAACGCGGGCATACTATA 59.999 52.381 12.47 0.00 0.00 1.31
632 724 2.354403 GGGAAACGCGGGCATACTATAT 60.354 50.000 12.47 0.00 0.00 0.86
633 725 3.332034 GGAAACGCGGGCATACTATATT 58.668 45.455 12.47 0.00 0.00 1.28
634 726 3.749609 GGAAACGCGGGCATACTATATTT 59.250 43.478 12.47 0.00 0.00 1.40
635 727 4.214758 GGAAACGCGGGCATACTATATTTT 59.785 41.667 12.47 0.00 0.00 1.82
636 728 5.409214 GGAAACGCGGGCATACTATATTTTA 59.591 40.000 12.47 0.00 0.00 1.52
637 729 6.401796 GGAAACGCGGGCATACTATATTTTAG 60.402 42.308 12.47 0.00 0.00 1.85
638 730 5.395682 ACGCGGGCATACTATATTTTAGA 57.604 39.130 12.47 0.00 0.00 2.10
639 731 5.786311 ACGCGGGCATACTATATTTTAGAA 58.214 37.500 12.47 0.00 0.00 2.10
640 732 6.403878 ACGCGGGCATACTATATTTTAGAAT 58.596 36.000 12.47 0.00 0.00 2.40
641 733 6.312918 ACGCGGGCATACTATATTTTAGAATG 59.687 38.462 12.47 0.00 0.00 2.67
642 734 6.238103 CGCGGGCATACTATATTTTAGAATGG 60.238 42.308 0.00 0.00 0.00 3.16
643 735 6.821665 GCGGGCATACTATATTTTAGAATGGA 59.178 38.462 0.00 0.00 0.00 3.41
644 736 7.011482 GCGGGCATACTATATTTTAGAATGGAG 59.989 40.741 0.00 0.00 0.00 3.86
645 737 7.495934 CGGGCATACTATATTTTAGAATGGAGG 59.504 40.741 0.00 0.00 0.00 4.30
646 738 7.775561 GGGCATACTATATTTTAGAATGGAGGG 59.224 40.741 0.00 0.00 0.00 4.30
647 739 8.548877 GGCATACTATATTTTAGAATGGAGGGA 58.451 37.037 0.00 0.00 0.00 4.20
648 740 9.606631 GCATACTATATTTTAGAATGGAGGGAG 57.393 37.037 0.00 0.00 0.00 4.30
652 744 9.900112 ACTATATTTTAGAATGGAGGGAGTACT 57.100 33.333 0.00 0.00 0.00 2.73
654 746 8.798975 ATATTTTAGAATGGAGGGAGTACTGA 57.201 34.615 0.00 0.00 0.00 3.41
655 747 6.945636 TTTTAGAATGGAGGGAGTACTGAA 57.054 37.500 0.00 0.00 0.00 3.02
656 748 6.945636 TTTAGAATGGAGGGAGTACTGAAA 57.054 37.500 0.00 0.00 0.00 2.69
657 749 4.828072 AGAATGGAGGGAGTACTGAAAC 57.172 45.455 0.00 0.00 0.00 2.78
660 752 2.972348 TGGAGGGAGTACTGAAACACT 58.028 47.619 0.00 0.00 0.00 3.55
666 758 6.287589 AGGGAGTACTGAAACACTGATAAG 57.712 41.667 0.00 0.00 0.00 1.73
673 765 3.997021 CTGAAACACTGATAAGGACGCTT 59.003 43.478 0.00 0.00 0.00 4.68
685 777 1.212751 GACGCTTTGACCAATGGCC 59.787 57.895 0.00 0.00 0.00 5.36
695 787 2.652095 CCAATGGCCACTTGCAGGG 61.652 63.158 8.16 0.00 43.89 4.45
713 805 2.565841 GGGCTAAGATAAGCACACAGG 58.434 52.381 0.00 0.00 45.64 4.00
717 809 4.054671 GCTAAGATAAGCACACAGGCTAG 58.945 47.826 0.00 0.00 45.07 3.42
719 811 3.810310 AGATAAGCACACAGGCTAGAC 57.190 47.619 0.00 0.00 45.07 2.59
721 813 3.515502 AGATAAGCACACAGGCTAGACAA 59.484 43.478 0.00 0.00 45.07 3.18
723 815 1.051812 AGCACACAGGCTAGACAACT 58.948 50.000 0.00 0.00 43.70 3.16
735 827 3.175710 ACAACTTCGGCCCCAGGT 61.176 61.111 0.00 0.00 0.00 4.00
744 836 0.315886 CGGCCCCAGGTTTTTGTTAC 59.684 55.000 0.00 0.00 0.00 2.50
748 840 2.432874 GCCCCAGGTTTTTGTTACAACT 59.567 45.455 0.00 0.00 0.00 3.16
763 855 2.919228 ACAACTGAAACCACTCCACTC 58.081 47.619 0.00 0.00 0.00 3.51
764 856 2.222027 CAACTGAAACCACTCCACTCC 58.778 52.381 0.00 0.00 0.00 3.85
765 857 0.393077 ACTGAAACCACTCCACTCCG 59.607 55.000 0.00 0.00 0.00 4.63
766 858 0.320771 CTGAAACCACTCCACTCCGG 60.321 60.000 0.00 0.00 0.00 5.14
767 859 0.761323 TGAAACCACTCCACTCCGGA 60.761 55.000 2.93 2.93 43.61 5.14
768 860 0.613777 GAAACCACTCCACTCCGGAT 59.386 55.000 3.57 0.00 45.19 4.18
769 861 0.324943 AAACCACTCCACTCCGGATG 59.675 55.000 3.57 5.72 45.19 3.51
770 862 0.836400 AACCACTCCACTCCGGATGT 60.836 55.000 3.57 2.11 45.19 3.06
771 863 1.219124 CCACTCCACTCCGGATGTG 59.781 63.158 20.66 20.66 45.19 3.21
772 864 1.257750 CCACTCCACTCCGGATGTGA 61.258 60.000 26.08 13.86 45.19 3.58
773 865 0.826715 CACTCCACTCCGGATGTGAT 59.173 55.000 26.08 13.82 45.19 3.06
809 916 3.004002 CGTGTGCTAATCCGGTATCTGTA 59.996 47.826 0.00 0.00 0.00 2.74
810 917 4.547532 GTGTGCTAATCCGGTATCTGTAG 58.452 47.826 0.00 0.00 0.00 2.74
811 918 4.277672 GTGTGCTAATCCGGTATCTGTAGA 59.722 45.833 0.00 0.00 0.00 2.59
812 919 4.277672 TGTGCTAATCCGGTATCTGTAGAC 59.722 45.833 0.00 0.00 0.00 2.59
835 945 4.194640 TGTAGCAGTACTAGTACCTTCCG 58.805 47.826 25.97 12.73 36.75 4.30
852 965 0.306533 CCGGTGTCCAAACAAAGTCG 59.693 55.000 0.00 0.00 37.08 4.18
873 991 4.039092 ACTCAAGCCCCGCTGCAT 62.039 61.111 0.00 0.00 39.62 3.96
874 992 3.515286 CTCAAGCCCCGCTGCATG 61.515 66.667 0.00 0.00 39.62 4.06
883 1001 2.216046 CCCCGCTGCATGCATATATAG 58.784 52.381 22.97 9.56 43.06 1.31
915 1045 5.797434 CAGATCCATCGATGTTATCACTACG 59.203 44.000 26.90 11.01 0.00 3.51
918 1048 3.914966 CCATCGATGTTATCACTACGCTC 59.085 47.826 23.27 0.00 0.00 5.03
919 1049 4.320567 CCATCGATGTTATCACTACGCTCT 60.321 45.833 23.27 0.00 0.00 4.09
920 1050 4.895224 TCGATGTTATCACTACGCTCTT 57.105 40.909 0.00 0.00 0.00 2.85
921 1051 4.845387 TCGATGTTATCACTACGCTCTTC 58.155 43.478 0.00 0.00 0.00 2.87
922 1052 4.334481 TCGATGTTATCACTACGCTCTTCA 59.666 41.667 0.00 0.00 0.00 3.02
923 1053 4.672862 CGATGTTATCACTACGCTCTTCAG 59.327 45.833 0.00 0.00 0.00 3.02
936 1067 2.992543 GCTCTTCAGCACTCACAACTAG 59.007 50.000 0.00 0.00 46.06 2.57
945 1076 5.119898 CAGCACTCACAACTAGACATTCTTC 59.880 44.000 0.00 0.00 0.00 2.87
946 1077 4.090642 GCACTCACAACTAGACATTCTTCG 59.909 45.833 0.00 0.00 0.00 3.79
947 1078 5.223382 CACTCACAACTAGACATTCTTCGT 58.777 41.667 0.00 0.00 0.00 3.85
948 1079 5.343593 CACTCACAACTAGACATTCTTCGTC 59.656 44.000 0.00 0.00 0.00 4.20
949 1080 5.241949 ACTCACAACTAGACATTCTTCGTCT 59.758 40.000 0.00 0.00 45.53 4.18
950 1081 5.700846 TCACAACTAGACATTCTTCGTCTC 58.299 41.667 0.00 0.00 42.69 3.36
951 1082 4.555360 CACAACTAGACATTCTTCGTCTCG 59.445 45.833 0.00 0.00 42.69 4.04
952 1083 4.215827 ACAACTAGACATTCTTCGTCTCGT 59.784 41.667 0.00 0.00 42.69 4.18
953 1084 5.154932 CAACTAGACATTCTTCGTCTCGTT 58.845 41.667 0.00 4.85 45.18 3.85
954 1085 4.724303 ACTAGACATTCTTCGTCTCGTTG 58.276 43.478 0.00 0.00 42.69 4.10
955 1086 3.917329 AGACATTCTTCGTCTCGTTGA 57.083 42.857 0.00 0.00 39.56 3.18
956 1087 4.442375 AGACATTCTTCGTCTCGTTGAT 57.558 40.909 0.00 0.00 39.56 2.57
958 1089 3.512680 ACATTCTTCGTCTCGTTGATCC 58.487 45.455 0.00 0.00 0.00 3.36
959 1090 3.193691 ACATTCTTCGTCTCGTTGATCCT 59.806 43.478 0.00 0.00 0.00 3.24
960 1091 2.921634 TCTTCGTCTCGTTGATCCTG 57.078 50.000 0.00 0.00 0.00 3.86
961 1092 1.135373 TCTTCGTCTCGTTGATCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
963 1095 1.136774 CGTCTCGTTGATCCTGCGA 59.863 57.895 0.00 0.00 0.00 5.10
966 1098 2.540973 CGTCTCGTTGATCCTGCGAATA 60.541 50.000 0.00 0.00 34.13 1.75
996 1128 6.533723 CGATTCTACTAGCTACATCGATCTCT 59.466 42.308 0.00 0.00 36.47 3.10
997 1129 7.464045 CGATTCTACTAGCTACATCGATCTCTG 60.464 44.444 0.00 0.00 36.47 3.35
1014 1146 5.003692 TCTCTGGAAGAAGTTGATCATCG 57.996 43.478 0.00 0.00 46.34 3.84
1015 1147 4.706962 TCTCTGGAAGAAGTTGATCATCGA 59.293 41.667 0.00 0.00 46.34 3.59
1017 1149 5.171476 TCTGGAAGAAGTTGATCATCGAAC 58.829 41.667 0.00 0.00 42.31 3.95
1018 1150 3.926527 TGGAAGAAGTTGATCATCGAACG 59.073 43.478 0.00 0.00 0.00 3.95
1019 1151 4.174009 GGAAGAAGTTGATCATCGAACGA 58.826 43.478 0.00 0.00 0.00 3.85
1020 1152 4.625742 GGAAGAAGTTGATCATCGAACGAA 59.374 41.667 0.00 0.00 0.00 3.85
1021 1153 5.220303 GGAAGAAGTTGATCATCGAACGAAG 60.220 44.000 0.00 0.00 0.00 3.79
1051 1186 0.030297 AGATGGGGTCTCTGATGGCT 60.030 55.000 0.00 0.00 28.45 4.75
1054 1189 1.997874 GGGGTCTCTGATGGCTGGT 60.998 63.158 0.00 0.00 0.00 4.00
1080 1215 3.508840 GCCGGTTCTTGGCGATGG 61.509 66.667 1.90 0.00 43.70 3.51
1092 1227 0.751643 GGCGATGGCACCAAAGGTAT 60.752 55.000 1.01 0.00 42.47 2.73
1093 1228 1.476110 GGCGATGGCACCAAAGGTATA 60.476 52.381 1.01 0.00 42.47 1.47
1094 1229 2.504367 GCGATGGCACCAAAGGTATAT 58.496 47.619 0.00 0.00 39.62 0.86
1095 1230 3.558321 GGCGATGGCACCAAAGGTATATA 60.558 47.826 1.01 0.00 42.47 0.86
1096 1231 4.261801 GCGATGGCACCAAAGGTATATAT 58.738 43.478 0.00 0.00 39.62 0.86
1114 1249 2.663852 GCGGCTACACACACGGTT 60.664 61.111 0.00 0.00 0.00 4.44
1117 1252 1.282248 CGGCTACACACACGGTTCAG 61.282 60.000 0.00 0.00 0.00 3.02
1143 1278 3.087781 TGCTTGCAGCCATGTTTATGTA 58.912 40.909 5.82 0.00 41.51 2.29
1146 1281 4.741676 GCTTGCAGCCATGTTTATGTATTC 59.258 41.667 0.00 0.00 34.48 1.75
1149 1287 4.955450 TGCAGCCATGTTTATGTATTCCTT 59.045 37.500 0.00 0.00 32.21 3.36
1169 1355 1.775039 TTGCTTGCAGCTCGTGTGAC 61.775 55.000 9.12 0.00 42.97 3.67
1206 1392 1.162085 AAAGGAGGAGGTGGAGGCT 59.838 57.895 0.00 0.00 0.00 4.58
1266 1470 4.719369 GACGTCACCTCGCCGCTT 62.719 66.667 11.55 0.00 0.00 4.68
1352 1562 3.681835 GTCTCCGGTGTCTGGCGT 61.682 66.667 0.00 0.00 0.00 5.68
1353 1563 2.034532 TCTCCGGTGTCTGGCGTA 59.965 61.111 0.00 0.00 0.00 4.42
1364 1574 1.136984 CTGGCGTACACGAGGAGAC 59.863 63.158 5.84 0.00 43.02 3.36
1370 1586 0.304098 GTACACGAGGAGACGATCGG 59.696 60.000 20.98 1.61 43.12 4.18
1407 1623 2.602568 AGCCGGGACTGGTACGTT 60.603 61.111 2.18 0.00 0.00 3.99
1410 1626 1.876497 GCCGGGACTGGTACGTTACA 61.876 60.000 2.18 0.00 0.00 2.41
1421 1637 2.093152 GGTACGTTACAATTGCGACCAG 59.907 50.000 5.05 0.00 0.00 4.00
1434 1650 4.552365 ACCAGCCGCCGATGATGG 62.552 66.667 0.00 0.00 37.07 3.51
1453 1669 9.494271 GATGATGGCACTCTATACTTTGATTTA 57.506 33.333 0.00 0.00 0.00 1.40
1460 1676 7.399523 CACTCTATACTTTGATTTAACGTGGC 58.600 38.462 0.00 0.00 0.00 5.01
1463 1679 5.968528 ATACTTTGATTTAACGTGGCCAA 57.031 34.783 7.24 0.00 0.00 4.52
1464 1680 3.972403 ACTTTGATTTAACGTGGCCAAC 58.028 40.909 7.24 0.15 0.00 3.77
1465 1681 3.243602 ACTTTGATTTAACGTGGCCAACC 60.244 43.478 7.24 0.00 0.00 3.77
1467 1683 1.249407 GATTTAACGTGGCCAACCCA 58.751 50.000 7.24 0.00 42.79 4.51
1483 2011 4.275810 CAACCCATTGGATCTTGATCTGT 58.724 43.478 3.62 0.00 34.81 3.41
1494 2022 8.408043 TGGATCTTGATCTGTTAATTGTTTGT 57.592 30.769 10.03 0.00 0.00 2.83
1570 2098 4.465446 CAGGAGGAGAGGCCGGGA 62.465 72.222 2.18 0.00 43.43 5.14
1631 2159 4.760047 ACGCCTGACCGGACATGC 62.760 66.667 20.62 20.62 33.16 4.06
1632 2160 4.457496 CGCCTGACCGGACATGCT 62.457 66.667 25.51 0.00 33.16 3.79
1657 2185 6.419116 TCGTAGAGTGTACGCAATACTAGTAG 59.581 42.308 14.58 0.00 40.40 2.57
1658 2186 6.199908 CGTAGAGTGTACGCAATACTAGTAGT 59.800 42.308 6.93 8.14 34.56 2.73
1659 2187 7.379797 CGTAGAGTGTACGCAATACTAGTAGTA 59.620 40.741 12.38 12.38 34.56 1.82
1660 2188 7.475771 AGAGTGTACGCAATACTAGTAGTAC 57.524 40.000 12.25 17.23 32.84 2.73
1661 2189 6.481644 AGAGTGTACGCAATACTAGTAGTACC 59.518 42.308 19.58 13.88 32.84 3.34
1662 2190 6.115446 AGTGTACGCAATACTAGTAGTACCA 58.885 40.000 19.58 10.43 32.84 3.25
1663 2191 6.037610 AGTGTACGCAATACTAGTAGTACCAC 59.962 42.308 19.58 17.30 32.84 4.16
1664 2192 4.542662 ACGCAATACTAGTAGTACCACG 57.457 45.455 12.25 16.28 32.84 4.94
1665 2193 3.941483 ACGCAATACTAGTAGTACCACGT 59.059 43.478 19.66 19.66 32.84 4.49
1692 2223 1.527844 GCTGCTGGAATGCCTAGGG 60.528 63.158 11.72 0.00 34.31 3.53
1713 2244 2.125106 GCCCTACTGCCTTGACCG 60.125 66.667 0.00 0.00 0.00 4.79
1714 2245 2.955881 GCCCTACTGCCTTGACCGT 61.956 63.158 0.00 0.00 0.00 4.83
1748 2279 3.765381 TGCACAATATGTCCATATGGGG 58.235 45.455 21.78 3.62 34.45 4.96
1761 2292 3.490348 CATATGGGGTCATTTCCCTGTC 58.510 50.000 0.00 0.00 46.27 3.51
1893 2432 0.682292 GAGGTGCTCATAGGGGTAGC 59.318 60.000 0.00 0.00 36.77 3.58
1894 2433 1.115930 AGGTGCTCATAGGGGTAGCG 61.116 60.000 0.00 0.00 39.14 4.26
1908 2447 2.094597 GGGTAGCGTGTGTATGTGTACA 60.095 50.000 0.00 0.00 38.46 2.90
1918 2457 6.578944 GTGTGTATGTGTACATTCATAGGGA 58.421 40.000 0.00 0.00 42.43 4.20
1938 2477 2.287393 TGAGTGTATGCGCGTATGTT 57.713 45.000 20.45 2.21 0.00 2.71
1993 2532 7.683437 AAGGTTAACTTGGACTTTATAGCAC 57.317 36.000 5.42 0.00 38.21 4.40
1994 2533 6.775708 AGGTTAACTTGGACTTTATAGCACA 58.224 36.000 5.42 0.00 0.00 4.57
2019 3152 8.671921 CATACACAAGAGAGAAGTGCATATTTT 58.328 33.333 0.00 0.00 36.76 1.82
2026 4011 9.959721 AAGAGAGAAGTGCATATTTTAACCTTA 57.040 29.630 0.00 0.00 0.00 2.69
2042 4027 7.901283 TTAACCTTAAACTTTTGCCCTAGTT 57.099 32.000 0.00 0.00 36.20 2.24
2055 4040 7.842887 TTTGCCCTAGTTTAATTTACAACCT 57.157 32.000 0.00 0.00 0.00 3.50
2057 4042 8.937207 TTGCCCTAGTTTAATTTACAACCTTA 57.063 30.769 0.00 0.00 0.00 2.69
2092 4077 4.763279 CGTCTAAATTACAACCCCCAACTT 59.237 41.667 0.00 0.00 0.00 2.66
2107 4092 2.882137 CCAACTTTCAAAACCGGCTAGA 59.118 45.455 0.00 0.00 0.00 2.43
2121 4106 1.847088 GGCTAGAATTCAACCCTCCCT 59.153 52.381 8.44 0.00 0.00 4.20
2123 4108 3.458487 GGCTAGAATTCAACCCTCCCTTA 59.542 47.826 8.44 0.00 0.00 2.69
2173 4234 1.968017 CCAGTCAGCATGCCACGTT 60.968 57.895 15.66 0.00 34.76 3.99
2267 4329 7.716560 AGAAATCAAATTCCCAGAAAAACAAGG 59.283 33.333 0.00 0.00 0.00 3.61
2269 4331 5.912892 TCAAATTCCCAGAAAAACAAGGAC 58.087 37.500 0.00 0.00 0.00 3.85
2282 4382 3.619233 ACAAGGACAAACGAATTTCCG 57.381 42.857 0.00 0.00 0.00 4.30
2288 4388 5.838529 AGGACAAACGAATTTCCGAAAAAT 58.161 33.333 0.00 0.00 0.00 1.82
2289 4389 5.918576 AGGACAAACGAATTTCCGAAAAATC 59.081 36.000 0.00 0.00 0.00 2.17
2563 4734 0.252513 TCGATCAACAGGGAGGGGAA 60.253 55.000 0.00 0.00 0.00 3.97
2595 4766 0.841289 ACCGGTTTTGAGACTTGGGA 59.159 50.000 0.00 0.00 0.00 4.37
2610 5120 8.160765 TGAGACTTGGGAATTGTAATTTAGACA 58.839 33.333 0.00 0.00 0.00 3.41
2728 5394 2.619646 GCTTTCCCACTGGTTTTTCGTA 59.380 45.455 0.00 0.00 0.00 3.43
2731 5397 2.841215 TCCCACTGGTTTTTCGTACAG 58.159 47.619 0.00 0.00 37.01 2.74
2739 5405 7.377662 CCACTGGTTTTTCGTACAGTTAATTTC 59.622 37.037 0.00 0.00 41.85 2.17
2740 5406 8.126700 CACTGGTTTTTCGTACAGTTAATTTCT 58.873 33.333 0.00 0.00 41.85 2.52
2741 5407 9.328845 ACTGGTTTTTCGTACAGTTAATTTCTA 57.671 29.630 0.00 0.00 41.03 2.10
2742 5408 9.807386 CTGGTTTTTCGTACAGTTAATTTCTAG 57.193 33.333 0.00 0.00 0.00 2.43
2743 5409 8.776470 TGGTTTTTCGTACAGTTAATTTCTAGG 58.224 33.333 0.00 0.00 0.00 3.02
2775 5459 9.011095 GCTACCTTCCCCACTATTTTTATATTC 57.989 37.037 0.00 0.00 0.00 1.75
2776 5460 9.216117 CTACCTTCCCCACTATTTTTATATTCG 57.784 37.037 0.00 0.00 0.00 3.34
2780 5464 8.630054 TTCCCCACTATTTTTATATTCGGATG 57.370 34.615 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.813753 CCCACTGTACGCCGATTGG 60.814 63.158 0.00 0.00 38.77 3.16
1 2 2.461110 GCCCACTGTACGCCGATTG 61.461 63.158 0.00 0.00 0.00 2.67
2 3 2.125269 GCCCACTGTACGCCGATT 60.125 61.111 0.00 0.00 0.00 3.34
3 4 4.157120 GGCCCACTGTACGCCGAT 62.157 66.667 0.00 0.00 31.92 4.18
7 8 4.065281 AGTCGGCCCACTGTACGC 62.065 66.667 0.64 0.00 0.00 4.42
8 9 2.126071 CAGTCGGCCCACTGTACG 60.126 66.667 21.26 0.00 39.26 3.67
9 10 2.264794 CCAGTCGGCCCACTGTAC 59.735 66.667 26.22 2.69 42.10 2.90
10 11 3.000819 CCCAGTCGGCCCACTGTA 61.001 66.667 26.22 0.00 42.10 2.74
17 18 3.699134 GATTGGACCCCAGTCGGCC 62.699 68.421 0.00 0.00 44.54 6.13
18 19 2.124695 GATTGGACCCCAGTCGGC 60.125 66.667 0.00 0.00 44.54 5.54
21 22 2.124695 GCCGATTGGACCCCAGTC 60.125 66.667 1.98 0.00 42.73 3.51
22 23 3.728373 GGCCGATTGGACCCCAGT 61.728 66.667 1.98 0.00 37.27 4.00
23 24 3.704231 CTGGCCGATTGGACCCCAG 62.704 68.421 1.02 6.06 46.01 4.45
24 25 3.727258 CTGGCCGATTGGACCCCA 61.727 66.667 1.02 0.00 46.01 4.96
26 27 4.424711 TGCTGGCCGATTGGACCC 62.425 66.667 1.02 0.00 46.01 4.46
27 28 2.825836 CTGCTGGCCGATTGGACC 60.826 66.667 1.02 3.89 46.01 4.46
29 30 3.982316 CTGCTGCTGGCCGATTGGA 62.982 63.158 1.98 0.00 40.92 3.53
30 31 3.515286 CTGCTGCTGGCCGATTGG 61.515 66.667 0.00 0.00 40.92 3.16
31 32 3.515286 CCTGCTGCTGGCCGATTG 61.515 66.667 12.79 0.00 40.92 2.67
41 42 4.479993 ATCCAGTCGGCCTGCTGC 62.480 66.667 15.45 0.00 40.06 5.25
42 43 2.202987 GATCCAGTCGGCCTGCTG 60.203 66.667 14.32 14.32 40.06 4.41
43 44 3.474570 GGATCCAGTCGGCCTGCT 61.475 66.667 6.95 0.00 40.06 4.24
44 45 2.615227 ATTGGATCCAGTCGGCCTGC 62.615 60.000 15.53 0.00 40.06 4.85
45 46 0.533755 GATTGGATCCAGTCGGCCTG 60.534 60.000 20.21 0.00 41.15 4.85
46 47 1.832912 GATTGGATCCAGTCGGCCT 59.167 57.895 20.21 0.00 0.00 5.19
47 48 4.464262 GATTGGATCCAGTCGGCC 57.536 61.111 20.21 0.00 0.00 6.13
51 52 0.533755 CTGGCCGATTGGATCCAGTC 60.534 60.000 23.82 23.82 39.45 3.51
52 53 1.528824 CTGGCCGATTGGATCCAGT 59.471 57.895 15.53 12.79 39.45 4.00
53 54 1.895707 GCTGGCCGATTGGATCCAG 60.896 63.158 15.53 17.48 44.28 3.86
54 55 2.192979 GCTGGCCGATTGGATCCA 59.807 61.111 11.44 11.44 37.49 3.41
55 56 1.895707 CTGCTGGCCGATTGGATCC 60.896 63.158 4.20 4.20 37.49 3.36
56 57 0.106708 TACTGCTGGCCGATTGGATC 59.893 55.000 1.98 0.00 37.49 3.36
57 58 0.107456 CTACTGCTGGCCGATTGGAT 59.893 55.000 1.98 0.00 37.49 3.41
58 59 1.522092 CTACTGCTGGCCGATTGGA 59.478 57.895 1.98 0.00 37.49 3.53
59 60 1.524621 CCTACTGCTGGCCGATTGG 60.525 63.158 0.00 0.00 38.77 3.16
60 61 2.182842 GCCTACTGCTGGCCGATTG 61.183 63.158 0.00 0.00 44.32 2.67
61 62 2.190578 GCCTACTGCTGGCCGATT 59.809 61.111 0.00 0.00 44.32 3.34
67 68 2.185350 CAGTCGGCCTACTGCTGG 59.815 66.667 23.05 1.31 46.96 4.85
69 70 2.509931 TACCCAGTCGGCCTACTGCT 62.510 60.000 27.79 18.11 44.56 4.24
70 71 1.400530 ATACCCAGTCGGCCTACTGC 61.401 60.000 27.79 1.63 44.56 4.40
71 72 1.120530 AATACCCAGTCGGCCTACTG 58.879 55.000 26.58 26.58 45.33 2.74
72 73 2.761786 TAATACCCAGTCGGCCTACT 57.238 50.000 3.59 3.59 33.26 2.57
73 74 4.347360 AAATAATACCCAGTCGGCCTAC 57.653 45.455 0.00 0.00 33.26 3.18
74 75 5.376756 AAAAATAATACCCAGTCGGCCTA 57.623 39.130 0.00 0.00 33.26 3.93
75 76 3.945640 AAAATAATACCCAGTCGGCCT 57.054 42.857 0.00 0.00 33.26 5.19
76 77 6.453926 TTTAAAAATAATACCCAGTCGGCC 57.546 37.500 0.00 0.00 33.26 6.13
157 158 4.769345 TTGGAAAACAGGCCAGATTTTT 57.231 36.364 5.01 4.34 35.23 1.94
158 159 4.769345 TTTGGAAAACAGGCCAGATTTT 57.231 36.364 5.01 8.50 35.23 1.82
159 160 4.980339 ATTTGGAAAACAGGCCAGATTT 57.020 36.364 5.01 3.79 35.23 2.17
160 161 6.408869 CAATATTTGGAAAACAGGCCAGATT 58.591 36.000 5.01 0.00 35.23 2.40
161 162 5.627503 GCAATATTTGGAAAACAGGCCAGAT 60.628 40.000 5.01 0.00 35.23 2.90
162 163 4.322650 GCAATATTTGGAAAACAGGCCAGA 60.323 41.667 5.01 0.00 35.23 3.86
163 164 3.934579 GCAATATTTGGAAAACAGGCCAG 59.065 43.478 5.01 0.00 35.23 4.85
164 165 3.582208 AGCAATATTTGGAAAACAGGCCA 59.418 39.130 5.01 0.00 0.00 5.36
165 166 4.206477 AGCAATATTTGGAAAACAGGCC 57.794 40.909 0.00 0.00 0.00 5.19
166 167 6.258507 CCATTAGCAATATTTGGAAAACAGGC 59.741 38.462 0.00 0.00 0.00 4.85
167 168 6.258507 GCCATTAGCAATATTTGGAAAACAGG 59.741 38.462 7.21 0.00 42.97 4.00
168 169 7.237920 GCCATTAGCAATATTTGGAAAACAG 57.762 36.000 7.21 0.00 42.97 3.16
171 172 7.336427 CCAAAGCCATTAGCAATATTTGGAAAA 59.664 33.333 7.21 0.00 45.06 2.29
172 173 6.822676 CCAAAGCCATTAGCAATATTTGGAAA 59.177 34.615 7.21 0.00 45.06 3.13
173 174 6.347696 CCAAAGCCATTAGCAATATTTGGAA 58.652 36.000 7.21 0.00 45.06 3.53
174 175 5.684552 GCCAAAGCCATTAGCAATATTTGGA 60.685 40.000 15.86 0.00 45.06 3.53
191 192 2.613506 AAGTACGTGGCGCCAAAGC 61.614 57.895 34.66 18.87 0.00 3.51
200 201 0.037605 GTCCTGGACCAAGTACGTGG 60.038 60.000 24.18 24.18 44.92 4.94
206 207 2.031870 GCAAAAAGTCCTGGACCAAGT 58.968 47.619 22.81 1.55 32.18 3.16
207 208 1.001378 CGCAAAAAGTCCTGGACCAAG 60.001 52.381 22.81 10.06 32.18 3.61
208 209 1.028905 CGCAAAAAGTCCTGGACCAA 58.971 50.000 22.81 0.00 32.18 3.67
210 211 0.875059 CTCGCAAAAAGTCCTGGACC 59.125 55.000 22.81 5.87 32.18 4.46
211 212 1.801178 CTCTCGCAAAAAGTCCTGGAC 59.199 52.381 19.20 19.20 0.00 4.02
212 213 1.270839 CCTCTCGCAAAAAGTCCTGGA 60.271 52.381 0.00 0.00 0.00 3.86
213 214 1.160137 CCTCTCGCAAAAAGTCCTGG 58.840 55.000 0.00 0.00 0.00 4.45
214 215 2.169832 TCCTCTCGCAAAAAGTCCTG 57.830 50.000 0.00 0.00 0.00 3.86
217 218 3.074412 TCCATTCCTCTCGCAAAAAGTC 58.926 45.455 0.00 0.00 0.00 3.01
218 219 3.140325 TCCATTCCTCTCGCAAAAAGT 57.860 42.857 0.00 0.00 0.00 2.66
219 220 3.667960 CGTTCCATTCCTCTCGCAAAAAG 60.668 47.826 0.00 0.00 0.00 2.27
220 221 2.225491 CGTTCCATTCCTCTCGCAAAAA 59.775 45.455 0.00 0.00 0.00 1.94
221 222 1.804151 CGTTCCATTCCTCTCGCAAAA 59.196 47.619 0.00 0.00 0.00 2.44
222 223 1.438651 CGTTCCATTCCTCTCGCAAA 58.561 50.000 0.00 0.00 0.00 3.68
223 224 0.391130 CCGTTCCATTCCTCTCGCAA 60.391 55.000 0.00 0.00 0.00 4.85
224 225 1.218047 CCGTTCCATTCCTCTCGCA 59.782 57.895 0.00 0.00 0.00 5.10
225 226 0.105039 ATCCGTTCCATTCCTCTCGC 59.895 55.000 0.00 0.00 0.00 5.03
226 227 1.409064 TCATCCGTTCCATTCCTCTCG 59.591 52.381 0.00 0.00 0.00 4.04
227 228 2.799917 CGTCATCCGTTCCATTCCTCTC 60.800 54.545 0.00 0.00 0.00 3.20
228 229 1.137086 CGTCATCCGTTCCATTCCTCT 59.863 52.381 0.00 0.00 0.00 3.69
229 230 1.136305 TCGTCATCCGTTCCATTCCTC 59.864 52.381 0.00 0.00 37.94 3.71
259 260 2.203640 AGGGAGGTCGTCAGTGCA 60.204 61.111 0.00 0.00 0.00 4.57
293 294 2.943345 GCATCGTTATCAGCGGCGG 61.943 63.158 9.78 0.00 0.00 6.13
337 339 5.590663 ACAGATCGAGTACATTCTGAAGCTA 59.409 40.000 16.27 0.00 38.25 3.32
338 340 4.400884 ACAGATCGAGTACATTCTGAAGCT 59.599 41.667 16.27 0.00 38.25 3.74
339 341 4.677584 ACAGATCGAGTACATTCTGAAGC 58.322 43.478 16.27 0.00 38.25 3.86
342 344 5.277538 CGATGACAGATCGAGTACATTCTGA 60.278 44.000 16.27 0.00 43.59 3.27
344 346 4.816925 TCGATGACAGATCGAGTACATTCT 59.183 41.667 2.72 0.00 44.42 2.40
345 347 5.096954 TCGATGACAGATCGAGTACATTC 57.903 43.478 2.72 0.00 44.42 2.67
354 356 2.455032 GGTGACTTCGATGACAGATCG 58.545 52.381 5.16 0.00 42.38 3.69
355 357 2.097629 TCGGTGACTTCGATGACAGATC 59.902 50.000 5.16 0.00 0.00 2.75
356 358 2.092323 TCGGTGACTTCGATGACAGAT 58.908 47.619 5.16 0.00 0.00 2.90
368 445 1.337260 GCACTCACAAGATCGGTGACT 60.337 52.381 16.24 7.67 40.16 3.41
370 447 0.388520 CGCACTCACAAGATCGGTGA 60.389 55.000 18.27 18.27 42.62 4.02
387 464 0.172803 ACGATGTTCCTACCAGACGC 59.827 55.000 0.00 0.00 0.00 5.19
408 500 6.325993 TGAAATGGAGGGAGTATCATTTGA 57.674 37.500 0.00 0.00 39.15 2.69
409 501 8.696043 TTATGAAATGGAGGGAGTATCATTTG 57.304 34.615 0.00 0.00 39.15 2.32
411 503 8.451245 ACATTATGAAATGGAGGGAGTATCATT 58.549 33.333 0.00 0.00 45.72 2.57
412 504 7.993416 ACATTATGAAATGGAGGGAGTATCAT 58.007 34.615 0.00 0.00 45.72 2.45
413 505 7.392766 ACATTATGAAATGGAGGGAGTATCA 57.607 36.000 0.00 0.00 45.72 2.15
430 522 9.613957 CGTGGATAGAGAAAGTACTACATTATG 57.386 37.037 0.00 0.00 0.00 1.90
432 524 8.618677 CACGTGGATAGAGAAAGTACTACATTA 58.381 37.037 7.95 0.00 0.00 1.90
433 525 7.122353 ACACGTGGATAGAGAAAGTACTACATT 59.878 37.037 21.57 0.00 0.00 2.71
434 526 6.602406 ACACGTGGATAGAGAAAGTACTACAT 59.398 38.462 21.57 0.00 0.00 2.29
435 527 5.942236 ACACGTGGATAGAGAAAGTACTACA 59.058 40.000 21.57 0.00 0.00 2.74
436 528 6.434018 ACACGTGGATAGAGAAAGTACTAC 57.566 41.667 21.57 0.00 0.00 2.73
437 529 7.175467 TGAAACACGTGGATAGAGAAAGTACTA 59.825 37.037 21.57 0.00 0.00 1.82
438 530 5.979288 AACACGTGGATAGAGAAAGTACT 57.021 39.130 21.57 0.00 0.00 2.73
439 531 6.154445 TGAAACACGTGGATAGAGAAAGTAC 58.846 40.000 21.57 0.00 0.00 2.73
440 532 6.335471 TGAAACACGTGGATAGAGAAAGTA 57.665 37.500 21.57 0.00 0.00 2.24
441 533 5.209818 TGAAACACGTGGATAGAGAAAGT 57.790 39.130 21.57 0.00 0.00 2.66
442 534 5.696724 AGTTGAAACACGTGGATAGAGAAAG 59.303 40.000 21.57 0.00 0.00 2.62
443 535 5.607477 AGTTGAAACACGTGGATAGAGAAA 58.393 37.500 21.57 0.34 0.00 2.52
444 536 5.209818 AGTTGAAACACGTGGATAGAGAA 57.790 39.130 21.57 0.12 0.00 2.87
445 537 4.866508 AGTTGAAACACGTGGATAGAGA 57.133 40.909 21.57 0.00 0.00 3.10
446 538 5.465390 TCAAAGTTGAAACACGTGGATAGAG 59.535 40.000 21.57 0.00 33.55 2.43
447 539 5.235616 GTCAAAGTTGAAACACGTGGATAGA 59.764 40.000 21.57 0.00 39.21 1.98
448 540 5.440685 GTCAAAGTTGAAACACGTGGATAG 58.559 41.667 21.57 0.00 39.21 2.08
449 541 4.273969 GGTCAAAGTTGAAACACGTGGATA 59.726 41.667 21.57 0.00 39.21 2.59
450 542 3.066203 GGTCAAAGTTGAAACACGTGGAT 59.934 43.478 21.57 7.88 39.21 3.41
451 543 2.420722 GGTCAAAGTTGAAACACGTGGA 59.579 45.455 21.57 0.00 39.21 4.02
452 544 2.789779 CGGTCAAAGTTGAAACACGTGG 60.790 50.000 21.57 1.66 39.21 4.94
453 545 2.159626 ACGGTCAAAGTTGAAACACGTG 60.160 45.455 15.48 15.48 39.21 4.49
454 546 2.078392 ACGGTCAAAGTTGAAACACGT 58.922 42.857 0.00 2.58 39.21 4.49
455 547 2.817538 ACGGTCAAAGTTGAAACACG 57.182 45.000 0.00 2.00 39.21 4.49
456 548 7.514573 AAATTTACGGTCAAAGTTGAAACAC 57.485 32.000 0.00 0.00 39.21 3.32
457 549 9.074443 GTTAAATTTACGGTCAAAGTTGAAACA 57.926 29.630 0.00 0.00 39.21 2.83
458 550 9.292846 AGTTAAATTTACGGTCAAAGTTGAAAC 57.707 29.630 0.00 0.00 39.21 2.78
467 559 9.715121 AGTCTTGATAGTTAAATTTACGGTCAA 57.285 29.630 0.00 6.02 0.00 3.18
468 560 9.146984 CAGTCTTGATAGTTAAATTTACGGTCA 57.853 33.333 0.00 0.00 0.00 4.02
469 561 9.362539 TCAGTCTTGATAGTTAAATTTACGGTC 57.637 33.333 0.00 0.00 0.00 4.79
470 562 9.886132 ATCAGTCTTGATAGTTAAATTTACGGT 57.114 29.630 0.00 0.00 42.21 4.83
475 567 8.184192 CCGCAATCAGTCTTGATAGTTAAATTT 58.816 33.333 0.00 0.00 43.20 1.82
476 568 7.679638 GCCGCAATCAGTCTTGATAGTTAAATT 60.680 37.037 0.00 0.00 43.20 1.82
477 569 6.238484 GCCGCAATCAGTCTTGATAGTTAAAT 60.238 38.462 0.00 0.00 43.20 1.40
478 570 5.064707 GCCGCAATCAGTCTTGATAGTTAAA 59.935 40.000 0.00 0.00 43.20 1.52
479 571 4.570772 GCCGCAATCAGTCTTGATAGTTAA 59.429 41.667 0.00 0.00 43.20 2.01
480 572 4.119862 GCCGCAATCAGTCTTGATAGTTA 58.880 43.478 0.00 0.00 43.20 2.24
481 573 2.939103 GCCGCAATCAGTCTTGATAGTT 59.061 45.455 0.00 0.00 43.20 2.24
482 574 2.093500 TGCCGCAATCAGTCTTGATAGT 60.093 45.455 0.00 0.00 43.20 2.12
483 575 2.543012 CTGCCGCAATCAGTCTTGATAG 59.457 50.000 0.00 0.00 43.20 2.08
484 576 2.554142 CTGCCGCAATCAGTCTTGATA 58.446 47.619 0.00 0.00 43.20 2.15
485 577 1.376543 CTGCCGCAATCAGTCTTGAT 58.623 50.000 0.00 0.00 45.92 2.57
486 578 0.674581 CCTGCCGCAATCAGTCTTGA 60.675 55.000 0.00 0.00 37.81 3.02
487 579 0.674581 TCCTGCCGCAATCAGTCTTG 60.675 55.000 0.00 0.00 0.00 3.02
488 580 0.392193 CTCCTGCCGCAATCAGTCTT 60.392 55.000 0.00 0.00 0.00 3.01
489 581 1.220206 CTCCTGCCGCAATCAGTCT 59.780 57.895 0.00 0.00 0.00 3.24
490 582 2.467826 GCTCCTGCCGCAATCAGTC 61.468 63.158 0.00 0.00 0.00 3.51
491 583 2.437359 GCTCCTGCCGCAATCAGT 60.437 61.111 0.00 0.00 0.00 3.41
492 584 1.588824 TTTGCTCCTGCCGCAATCAG 61.589 55.000 0.00 0.00 45.67 2.90
493 585 1.177895 TTTTGCTCCTGCCGCAATCA 61.178 50.000 0.00 0.00 45.67 2.57
494 586 0.038343 TTTTTGCTCCTGCCGCAATC 60.038 50.000 0.00 0.00 45.67 2.67
495 587 0.609662 ATTTTTGCTCCTGCCGCAAT 59.390 45.000 0.00 0.00 45.67 3.56
496 588 0.038343 GATTTTTGCTCCTGCCGCAA 60.038 50.000 0.00 0.00 44.83 4.85
497 589 1.177895 TGATTTTTGCTCCTGCCGCA 61.178 50.000 0.00 0.00 38.71 5.69
498 590 0.174162 ATGATTTTTGCTCCTGCCGC 59.826 50.000 0.00 0.00 38.71 6.53
499 591 3.316029 TGATATGATTTTTGCTCCTGCCG 59.684 43.478 0.00 0.00 38.71 5.69
500 592 4.340381 ACTGATATGATTTTTGCTCCTGCC 59.660 41.667 0.00 0.00 38.71 4.85
501 593 5.066893 TCACTGATATGATTTTTGCTCCTGC 59.933 40.000 0.00 0.00 40.20 4.85
502 594 6.688637 TCACTGATATGATTTTTGCTCCTG 57.311 37.500 0.00 0.00 0.00 3.86
503 595 7.893124 ATTCACTGATATGATTTTTGCTCCT 57.107 32.000 0.00 0.00 0.00 3.69
504 596 7.377928 CGAATTCACTGATATGATTTTTGCTCC 59.622 37.037 6.22 0.00 0.00 4.70
505 597 7.912250 ACGAATTCACTGATATGATTTTTGCTC 59.088 33.333 6.22 0.00 0.00 4.26
506 598 7.765307 ACGAATTCACTGATATGATTTTTGCT 58.235 30.769 6.22 0.00 0.00 3.91
507 599 7.975866 ACGAATTCACTGATATGATTTTTGC 57.024 32.000 6.22 0.00 0.00 3.68
511 603 9.908152 TCGTATACGAATTCACTGATATGATTT 57.092 29.630 24.97 0.00 46.30 2.17
540 632 9.459640 GGCGGGAGAAATATAATTAAAAACTTC 57.540 33.333 0.00 0.00 0.00 3.01
541 633 8.132995 CGGCGGGAGAAATATAATTAAAAACTT 58.867 33.333 0.00 0.00 0.00 2.66
542 634 7.645402 CGGCGGGAGAAATATAATTAAAAACT 58.355 34.615 0.00 0.00 0.00 2.66
543 635 6.361481 GCGGCGGGAGAAATATAATTAAAAAC 59.639 38.462 9.78 0.00 0.00 2.43
544 636 6.039493 TGCGGCGGGAGAAATATAATTAAAAA 59.961 34.615 9.78 0.00 0.00 1.94
545 637 5.531659 TGCGGCGGGAGAAATATAATTAAAA 59.468 36.000 9.78 0.00 0.00 1.52
546 638 5.064558 TGCGGCGGGAGAAATATAATTAAA 58.935 37.500 9.78 0.00 0.00 1.52
547 639 4.643463 TGCGGCGGGAGAAATATAATTAA 58.357 39.130 9.78 0.00 0.00 1.40
548 640 4.250464 CTGCGGCGGGAGAAATATAATTA 58.750 43.478 9.78 0.00 32.53 1.40
549 641 3.074412 CTGCGGCGGGAGAAATATAATT 58.926 45.455 9.78 0.00 32.53 1.40
550 642 2.038557 ACTGCGGCGGGAGAAATATAAT 59.961 45.455 19.55 0.00 35.29 1.28
551 643 1.414919 ACTGCGGCGGGAGAAATATAA 59.585 47.619 19.55 0.00 35.29 0.98
552 644 1.045407 ACTGCGGCGGGAGAAATATA 58.955 50.000 19.55 0.00 35.29 0.86
553 645 0.180406 AACTGCGGCGGGAGAAATAT 59.820 50.000 19.55 0.00 35.29 1.28
554 646 0.742990 CAACTGCGGCGGGAGAAATA 60.743 55.000 19.55 0.00 35.29 1.40
555 647 2.040544 CAACTGCGGCGGGAGAAAT 61.041 57.895 19.55 2.59 35.29 2.17
556 648 2.463589 ATCAACTGCGGCGGGAGAAA 62.464 55.000 19.55 4.62 35.29 2.52
557 649 2.852495 GATCAACTGCGGCGGGAGAA 62.852 60.000 19.55 4.96 35.29 2.87
558 650 3.371097 GATCAACTGCGGCGGGAGA 62.371 63.158 19.55 10.60 35.29 3.71
559 651 2.859273 AAGATCAACTGCGGCGGGAG 62.859 60.000 14.26 11.31 37.67 4.30
560 652 2.954684 AAGATCAACTGCGGCGGGA 61.955 57.895 14.26 1.78 0.00 5.14
561 653 2.436646 AAGATCAACTGCGGCGGG 60.437 61.111 14.26 2.36 0.00 6.13
562 654 1.577328 AACAAGATCAACTGCGGCGG 61.577 55.000 9.78 7.39 0.00 6.13
563 655 0.453282 CAACAAGATCAACTGCGGCG 60.453 55.000 0.51 0.51 0.00 6.46
564 656 0.874390 TCAACAAGATCAACTGCGGC 59.126 50.000 0.00 0.00 0.00 6.53
565 657 3.837213 AATCAACAAGATCAACTGCGG 57.163 42.857 0.00 0.00 35.39 5.69
566 658 7.801547 AATTTAATCAACAAGATCAACTGCG 57.198 32.000 0.00 0.00 35.39 5.18
586 678 8.512138 CCGAAGTCTAACTTTGACCATAAATTT 58.488 33.333 8.36 0.00 41.15 1.82
587 679 7.120726 CCCGAAGTCTAACTTTGACCATAAATT 59.879 37.037 8.36 0.00 41.15 1.82
588 680 6.598064 CCCGAAGTCTAACTTTGACCATAAAT 59.402 38.462 8.36 0.00 41.15 1.40
589 681 5.935789 CCCGAAGTCTAACTTTGACCATAAA 59.064 40.000 8.36 0.00 41.15 1.40
590 682 5.246656 TCCCGAAGTCTAACTTTGACCATAA 59.753 40.000 8.36 0.00 41.15 1.90
591 683 4.773674 TCCCGAAGTCTAACTTTGACCATA 59.226 41.667 8.36 0.00 41.15 2.74
592 684 3.581332 TCCCGAAGTCTAACTTTGACCAT 59.419 43.478 8.36 0.00 41.15 3.55
593 685 2.967201 TCCCGAAGTCTAACTTTGACCA 59.033 45.455 8.36 0.00 41.15 4.02
594 686 3.672767 TCCCGAAGTCTAACTTTGACC 57.327 47.619 8.36 0.00 41.15 4.02
595 687 4.084693 CGTTTCCCGAAGTCTAACTTTGAC 60.085 45.833 8.36 0.00 41.15 3.18
596 688 4.053295 CGTTTCCCGAAGTCTAACTTTGA 58.947 43.478 8.36 0.00 41.15 2.69
597 689 3.363673 GCGTTTCCCGAAGTCTAACTTTG 60.364 47.826 0.84 0.84 38.80 2.77
598 690 2.804527 GCGTTTCCCGAAGTCTAACTTT 59.195 45.455 0.00 0.00 38.80 2.66
599 691 2.410939 GCGTTTCCCGAAGTCTAACTT 58.589 47.619 0.00 0.00 41.95 2.66
600 692 1.668047 CGCGTTTCCCGAAGTCTAACT 60.668 52.381 0.00 0.00 39.56 2.24
601 693 0.712222 CGCGTTTCCCGAAGTCTAAC 59.288 55.000 0.00 0.00 39.56 2.34
602 694 0.388907 CCGCGTTTCCCGAAGTCTAA 60.389 55.000 4.92 0.00 39.56 2.10
603 695 1.213537 CCGCGTTTCCCGAAGTCTA 59.786 57.895 4.92 0.00 39.56 2.59
604 696 2.048503 CCGCGTTTCCCGAAGTCT 60.049 61.111 4.92 0.00 39.56 3.24
605 697 3.116531 CCCGCGTTTCCCGAAGTC 61.117 66.667 4.92 0.00 39.56 3.01
608 700 3.312285 TATGCCCGCGTTTCCCGAA 62.312 57.895 4.92 0.00 39.56 4.30
609 701 3.772281 TATGCCCGCGTTTCCCGA 61.772 61.111 4.92 0.00 39.56 5.14
610 702 2.632136 TAGTATGCCCGCGTTTCCCG 62.632 60.000 4.92 0.00 40.40 5.14
611 703 0.250166 ATAGTATGCCCGCGTTTCCC 60.250 55.000 4.92 0.00 0.00 3.97
612 704 2.443887 TATAGTATGCCCGCGTTTCC 57.556 50.000 4.92 0.00 0.00 3.13
613 705 5.352643 AAAATATAGTATGCCCGCGTTTC 57.647 39.130 4.92 0.00 0.00 2.78
614 706 6.225318 TCTAAAATATAGTATGCCCGCGTTT 58.775 36.000 4.92 0.00 0.00 3.60
615 707 5.786311 TCTAAAATATAGTATGCCCGCGTT 58.214 37.500 4.92 0.00 0.00 4.84
616 708 5.395682 TCTAAAATATAGTATGCCCGCGT 57.604 39.130 4.92 0.00 0.00 6.01
617 709 6.238103 CCATTCTAAAATATAGTATGCCCGCG 60.238 42.308 0.00 0.00 0.00 6.46
618 710 6.821665 TCCATTCTAAAATATAGTATGCCCGC 59.178 38.462 0.00 0.00 0.00 6.13
619 711 7.495934 CCTCCATTCTAAAATATAGTATGCCCG 59.504 40.741 0.00 0.00 0.00 6.13
620 712 7.775561 CCCTCCATTCTAAAATATAGTATGCCC 59.224 40.741 0.00 0.00 0.00 5.36
621 713 8.548877 TCCCTCCATTCTAAAATATAGTATGCC 58.451 37.037 0.00 0.00 0.00 4.40
622 714 9.606631 CTCCCTCCATTCTAAAATATAGTATGC 57.393 37.037 0.00 0.00 0.00 3.14
626 718 9.900112 AGTACTCCCTCCATTCTAAAATATAGT 57.100 33.333 0.00 0.00 0.00 2.12
628 720 9.892444 TCAGTACTCCCTCCATTCTAAAATATA 57.108 33.333 0.00 0.00 0.00 0.86
629 721 8.798975 TCAGTACTCCCTCCATTCTAAAATAT 57.201 34.615 0.00 0.00 0.00 1.28
630 722 8.618240 TTCAGTACTCCCTCCATTCTAAAATA 57.382 34.615 0.00 0.00 0.00 1.40
631 723 7.510675 TTCAGTACTCCCTCCATTCTAAAAT 57.489 36.000 0.00 0.00 0.00 1.82
632 724 6.945636 TTCAGTACTCCCTCCATTCTAAAA 57.054 37.500 0.00 0.00 0.00 1.52
633 725 6.271391 TGTTTCAGTACTCCCTCCATTCTAAA 59.729 38.462 0.00 0.00 0.00 1.85
634 726 5.783360 TGTTTCAGTACTCCCTCCATTCTAA 59.217 40.000 0.00 0.00 0.00 2.10
635 727 5.187186 GTGTTTCAGTACTCCCTCCATTCTA 59.813 44.000 0.00 0.00 0.00 2.10
636 728 4.020128 GTGTTTCAGTACTCCCTCCATTCT 60.020 45.833 0.00 0.00 0.00 2.40
637 729 4.020128 AGTGTTTCAGTACTCCCTCCATTC 60.020 45.833 0.00 0.00 0.00 2.67
638 730 3.910627 AGTGTTTCAGTACTCCCTCCATT 59.089 43.478 0.00 0.00 0.00 3.16
639 731 3.261897 CAGTGTTTCAGTACTCCCTCCAT 59.738 47.826 0.00 0.00 0.00 3.41
640 732 2.632996 CAGTGTTTCAGTACTCCCTCCA 59.367 50.000 0.00 0.00 0.00 3.86
641 733 2.897969 TCAGTGTTTCAGTACTCCCTCC 59.102 50.000 0.00 0.00 0.00 4.30
642 734 4.810191 ATCAGTGTTTCAGTACTCCCTC 57.190 45.455 0.00 0.00 0.00 4.30
643 735 5.187967 CCTTATCAGTGTTTCAGTACTCCCT 59.812 44.000 0.00 0.00 0.00 4.20
644 736 5.187186 TCCTTATCAGTGTTTCAGTACTCCC 59.813 44.000 0.00 0.00 0.00 4.30
645 737 6.100668 GTCCTTATCAGTGTTTCAGTACTCC 58.899 44.000 0.00 0.00 0.00 3.85
646 738 5.800941 CGTCCTTATCAGTGTTTCAGTACTC 59.199 44.000 0.00 0.00 0.00 2.59
647 739 5.710984 CGTCCTTATCAGTGTTTCAGTACT 58.289 41.667 0.00 0.00 0.00 2.73
648 740 4.326548 GCGTCCTTATCAGTGTTTCAGTAC 59.673 45.833 0.00 0.00 0.00 2.73
649 741 4.219944 AGCGTCCTTATCAGTGTTTCAGTA 59.780 41.667 0.00 0.00 0.00 2.74
650 742 3.006967 AGCGTCCTTATCAGTGTTTCAGT 59.993 43.478 0.00 0.00 0.00 3.41
651 743 3.589988 AGCGTCCTTATCAGTGTTTCAG 58.410 45.455 0.00 0.00 0.00 3.02
652 744 3.678056 AGCGTCCTTATCAGTGTTTCA 57.322 42.857 0.00 0.00 0.00 2.69
653 745 4.451096 TCAAAGCGTCCTTATCAGTGTTTC 59.549 41.667 0.00 0.00 0.00 2.78
654 746 4.213482 GTCAAAGCGTCCTTATCAGTGTTT 59.787 41.667 0.00 0.00 0.00 2.83
655 747 3.746492 GTCAAAGCGTCCTTATCAGTGTT 59.254 43.478 0.00 0.00 0.00 3.32
656 748 3.326747 GTCAAAGCGTCCTTATCAGTGT 58.673 45.455 0.00 0.00 0.00 3.55
657 749 2.673368 GGTCAAAGCGTCCTTATCAGTG 59.327 50.000 0.00 0.00 0.00 3.66
660 752 3.410631 TTGGTCAAAGCGTCCTTATCA 57.589 42.857 0.00 0.00 0.00 2.15
666 758 1.212751 GCCATTGGTCAAAGCGTCC 59.787 57.895 4.26 0.00 0.00 4.79
673 765 0.758310 TGCAAGTGGCCATTGGTCAA 60.758 50.000 12.49 0.00 39.82 3.18
685 777 2.615912 GCTTATCTTAGCCCTGCAAGTG 59.384 50.000 0.00 0.00 35.06 3.16
695 787 2.911484 AGCCTGTGTGCTTATCTTAGC 58.089 47.619 0.00 0.00 38.85 3.09
696 788 5.163509 TGTCTAGCCTGTGTGCTTATCTTAG 60.164 44.000 0.00 0.00 42.75 2.18
697 789 4.709886 TGTCTAGCCTGTGTGCTTATCTTA 59.290 41.667 0.00 0.00 42.75 2.10
698 790 3.515502 TGTCTAGCCTGTGTGCTTATCTT 59.484 43.478 0.00 0.00 42.75 2.40
713 805 1.449778 GGGGCCGAAGTTGTCTAGC 60.450 63.158 0.00 0.00 0.00 3.42
717 809 2.359975 CCTGGGGCCGAAGTTGTC 60.360 66.667 0.00 0.00 0.00 3.18
719 811 1.112916 AAAACCTGGGGCCGAAGTTG 61.113 55.000 3.10 0.00 0.00 3.16
721 813 1.112916 CAAAAACCTGGGGCCGAAGT 61.113 55.000 0.00 0.00 0.00 3.01
723 815 0.688087 AACAAAAACCTGGGGCCGAA 60.688 50.000 0.00 0.00 0.00 4.30
735 827 6.015350 TGGAGTGGTTTCAGTTGTAACAAAAA 60.015 34.615 4.42 0.00 0.00 1.94
744 836 2.222027 GGAGTGGAGTGGTTTCAGTTG 58.778 52.381 0.00 0.00 0.00 3.16
748 840 0.761323 TCCGGAGTGGAGTGGTTTCA 60.761 55.000 0.00 0.00 43.74 2.69
763 855 0.310854 TGTCGATCGATCACATCCGG 59.689 55.000 22.50 7.01 0.00 5.14
764 856 2.119671 TTGTCGATCGATCACATCCG 57.880 50.000 22.50 10.62 0.00 4.18
765 857 2.989840 GGATTGTCGATCGATCACATCC 59.010 50.000 22.50 23.74 38.39 3.51
766 858 2.989840 GGGATTGTCGATCGATCACATC 59.010 50.000 22.50 20.34 39.51 3.06
767 859 2.608016 CGGGATTGTCGATCGATCACAT 60.608 50.000 22.50 14.98 39.66 3.21
768 860 1.269051 CGGGATTGTCGATCGATCACA 60.269 52.381 22.50 21.80 39.66 3.58
769 861 1.269102 ACGGGATTGTCGATCGATCAC 60.269 52.381 22.50 14.95 38.39 3.06
770 862 1.029681 ACGGGATTGTCGATCGATCA 58.970 50.000 22.50 17.37 38.39 2.92
771 863 1.269102 ACACGGGATTGTCGATCGATC 60.269 52.381 22.50 15.68 35.49 3.69
772 864 0.744874 ACACGGGATTGTCGATCGAT 59.255 50.000 22.50 5.04 35.49 3.59
773 865 0.179148 CACACGGGATTGTCGATCGA 60.179 55.000 15.15 15.15 35.49 3.59
809 916 5.697082 AGGTACTAGTACTGCTACAGTCT 57.303 43.478 27.71 13.19 40.15 3.24
810 917 5.296531 GGAAGGTACTAGTACTGCTACAGTC 59.703 48.000 27.71 13.70 40.84 3.51
811 918 5.192176 GGAAGGTACTAGTACTGCTACAGT 58.808 45.833 27.71 5.46 43.48 3.55
812 919 4.272991 CGGAAGGTACTAGTACTGCTACAG 59.727 50.000 27.71 14.07 38.49 2.74
835 945 1.002792 GCTCGACTTTGTTTGGACACC 60.003 52.381 0.00 0.00 34.98 4.16
852 965 4.400961 AGCGGGGCTTGAGTGCTC 62.401 66.667 0.00 0.00 33.89 4.26
873 991 7.060421 TGGATCTGGTCGTATCTATATATGCA 58.940 38.462 0.00 0.00 0.00 3.96
874 992 7.511959 TGGATCTGGTCGTATCTATATATGC 57.488 40.000 0.00 0.00 0.00 3.14
883 1001 3.191581 ACATCGATGGATCTGGTCGTATC 59.808 47.826 28.09 0.00 36.77 2.24
915 1045 1.876322 AGTTGTGAGTGCTGAAGAGC 58.124 50.000 0.00 0.00 46.44 4.09
918 1048 3.982475 TGTCTAGTTGTGAGTGCTGAAG 58.018 45.455 0.00 0.00 0.00 3.02
919 1049 4.607293 ATGTCTAGTTGTGAGTGCTGAA 57.393 40.909 0.00 0.00 0.00 3.02
920 1050 4.281941 AGAATGTCTAGTTGTGAGTGCTGA 59.718 41.667 0.00 0.00 0.00 4.26
921 1051 4.564041 AGAATGTCTAGTTGTGAGTGCTG 58.436 43.478 0.00 0.00 0.00 4.41
922 1052 4.881019 AGAATGTCTAGTTGTGAGTGCT 57.119 40.909 0.00 0.00 0.00 4.40
923 1053 4.090642 CGAAGAATGTCTAGTTGTGAGTGC 59.909 45.833 0.00 0.00 0.00 4.40
926 1057 5.704888 AGACGAAGAATGTCTAGTTGTGAG 58.295 41.667 0.00 0.00 44.57 3.51
929 1060 4.215827 ACGAGACGAAGAATGTCTAGTTGT 59.784 41.667 3.53 0.00 45.92 3.32
936 1067 3.548268 GGATCAACGAGACGAAGAATGTC 59.452 47.826 0.00 0.00 36.60 3.06
945 1076 0.456142 TTCGCAGGATCAACGAGACG 60.456 55.000 0.00 0.00 37.11 4.18
946 1077 1.927895 ATTCGCAGGATCAACGAGAC 58.072 50.000 0.00 0.00 37.11 3.36
947 1078 5.644977 ATATATTCGCAGGATCAACGAGA 57.355 39.130 0.00 0.00 37.11 4.04
948 1079 6.324522 GAATATATTCGCAGGATCAACGAG 57.675 41.667 9.65 0.00 37.11 4.18
966 1098 8.719560 TCGATGTAGCTAGTAGAATCGAATAT 57.280 34.615 17.77 0.00 36.55 1.28
980 1112 4.974399 TCTTCCAGAGATCGATGTAGCTA 58.026 43.478 0.54 0.00 0.00 3.32
981 1113 3.826524 TCTTCCAGAGATCGATGTAGCT 58.173 45.455 0.54 0.00 0.00 3.32
982 1114 4.037446 ACTTCTTCCAGAGATCGATGTAGC 59.963 45.833 0.54 0.00 33.49 3.58
983 1115 5.766150 ACTTCTTCCAGAGATCGATGTAG 57.234 43.478 0.54 0.00 33.49 2.74
984 1116 5.652452 TCAACTTCTTCCAGAGATCGATGTA 59.348 40.000 0.54 0.00 33.49 2.29
990 1122 5.691305 CGATGATCAACTTCTTCCAGAGATC 59.309 44.000 0.00 0.00 33.49 2.75
996 1128 3.926527 CGTTCGATGATCAACTTCTTCCA 59.073 43.478 0.00 0.00 0.00 3.53
997 1129 4.174009 TCGTTCGATGATCAACTTCTTCC 58.826 43.478 0.00 0.00 0.00 3.46
1021 1153 4.433888 GAGACCCCATCTAGCTAGCTAGC 61.434 56.522 36.81 33.96 44.10 3.42
1051 1186 3.198953 AACCGGCGAATCCCAACCA 62.199 57.895 9.30 0.00 0.00 3.67
1054 1189 0.958382 CAAGAACCGGCGAATCCCAA 60.958 55.000 9.30 0.00 0.00 4.12
1080 1215 2.161609 GCCGCATATATACCTTTGGTGC 59.838 50.000 0.00 0.00 36.19 5.01
1092 1227 1.269361 CCGTGTGTGTAGCCGCATATA 60.269 52.381 0.00 0.00 32.83 0.86
1093 1228 0.529773 CCGTGTGTGTAGCCGCATAT 60.530 55.000 0.00 0.00 32.83 1.78
1094 1229 1.153726 CCGTGTGTGTAGCCGCATA 60.154 57.895 0.00 0.00 32.83 3.14
1095 1230 2.434185 CCGTGTGTGTAGCCGCAT 60.434 61.111 0.00 0.00 32.83 4.73
1096 1231 3.448533 AACCGTGTGTGTAGCCGCA 62.449 57.895 0.00 0.00 0.00 5.69
1169 1355 2.678934 TCAGGGACCGGTTCCTCG 60.679 66.667 33.10 25.24 45.09 4.63
1345 1555 1.002990 TCTCCTCGTGTACGCCAGA 60.003 57.895 2.30 0.00 39.60 3.86
1352 1562 1.434622 GCCGATCGTCTCCTCGTGTA 61.435 60.000 15.09 0.00 33.11 2.90
1353 1563 2.762234 GCCGATCGTCTCCTCGTGT 61.762 63.158 15.09 0.00 33.11 4.49
1407 1623 3.883462 CGGCTGGTCGCAATTGTA 58.117 55.556 7.40 0.00 41.67 2.41
1434 1650 7.399523 CCACGTTAAATCAAAGTATAGAGTGC 58.600 38.462 0.00 0.00 0.00 4.40
1439 1655 6.671614 TGGCCACGTTAAATCAAAGTATAG 57.328 37.500 0.00 0.00 0.00 1.31
1440 1656 6.127952 GGTTGGCCACGTTAAATCAAAGTATA 60.128 38.462 3.88 0.00 34.09 1.47
1441 1657 5.336134 GGTTGGCCACGTTAAATCAAAGTAT 60.336 40.000 3.88 0.00 34.09 2.12
1453 1669 3.453988 CAATGGGTTGGCCACGTT 58.546 55.556 3.88 0.00 36.17 3.99
1463 1679 4.598036 AACAGATCAAGATCCAATGGGT 57.402 40.909 0.00 0.00 38.58 4.51
1464 1680 7.069085 ACAATTAACAGATCAAGATCCAATGGG 59.931 37.037 0.00 0.00 38.58 4.00
1465 1681 8.004087 ACAATTAACAGATCAAGATCCAATGG 57.996 34.615 6.45 0.00 38.58 3.16
1467 1683 9.865321 CAAACAATTAACAGATCAAGATCCAAT 57.135 29.630 6.45 0.22 38.58 3.16
1483 2011 5.581085 CACCGACCCAAAAACAAACAATTAA 59.419 36.000 0.00 0.00 0.00 1.40
1494 2022 1.830408 CTGCCCACCGACCCAAAAA 60.830 57.895 0.00 0.00 0.00 1.94
1570 2098 2.663852 GTGTAGGTGTGCGCCGTT 60.664 61.111 4.18 0.00 0.00 4.44
1631 2159 4.533225 AGTATTGCGTACACTCTACGAG 57.467 45.455 4.13 0.00 42.94 4.18
1632 2160 5.111989 ACTAGTATTGCGTACACTCTACGA 58.888 41.667 0.00 0.00 42.94 3.43
1657 2185 2.359791 GCGTGACGTGACGTGGTAC 61.360 63.158 27.41 10.88 41.37 3.34
1658 2186 2.051076 GCGTGACGTGACGTGGTA 60.051 61.111 27.41 0.00 41.37 3.25
1659 2187 3.896133 AGCGTGACGTGACGTGGT 61.896 61.111 27.41 11.01 41.37 4.16
1660 2188 3.394874 CAGCGTGACGTGACGTGG 61.395 66.667 27.41 16.41 41.37 4.94
1661 2189 4.046998 GCAGCGTGACGTGACGTG 62.047 66.667 27.41 22.84 41.37 4.49
1662 2190 4.266070 AGCAGCGTGACGTGACGT 62.266 61.111 27.41 11.70 45.10 4.34
1663 2191 3.756677 CAGCAGCGTGACGTGACG 61.757 66.667 23.43 23.43 42.42 4.35
1664 2192 3.406361 CCAGCAGCGTGACGTGAC 61.406 66.667 6.91 0.00 0.00 3.67
1665 2193 2.434658 ATTCCAGCAGCGTGACGTGA 62.435 55.000 6.91 0.00 0.00 4.35
1699 2230 3.735181 GGTACGGTCAAGGCAGTAG 57.265 57.895 0.00 0.00 0.00 2.57
1713 2244 4.865761 TGCATCTCCGCGCGGTAC 62.866 66.667 44.16 29.29 36.47 3.34
1714 2245 4.865761 GTGCATCTCCGCGCGGTA 62.866 66.667 44.16 33.76 36.47 4.02
1721 2252 2.837498 TGGACATATTGTGCATCTCCG 58.163 47.619 0.00 0.00 43.78 4.63
1732 2263 6.256053 GGAAATGACCCCATATGGACATATT 58.744 40.000 24.00 17.72 39.37 1.28
1748 2279 5.449553 AGGGATATTTGACAGGGAAATGAC 58.550 41.667 0.00 0.00 0.00 3.06
1893 2432 5.462068 CCCTATGAATGTACACATACACACG 59.538 44.000 0.00 0.00 44.11 4.49
1894 2433 6.578944 TCCCTATGAATGTACACATACACAC 58.421 40.000 0.00 0.00 44.11 3.82
1908 2447 4.825422 CGCATACACTCATCCCTATGAAT 58.175 43.478 0.00 0.00 41.57 2.57
1918 2457 2.509052 ACATACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
1938 2477 1.006688 TACAGACGCAAGCGCTCAA 60.007 52.632 12.06 0.84 44.19 3.02
1988 2527 5.714047 CACTTCTCTCTTGTGTATGTGCTA 58.286 41.667 0.00 0.00 0.00 3.49
1989 2528 4.564041 CACTTCTCTCTTGTGTATGTGCT 58.436 43.478 0.00 0.00 0.00 4.40
1990 2529 3.124297 GCACTTCTCTCTTGTGTATGTGC 59.876 47.826 0.00 0.00 40.72 4.57
1993 2532 7.783090 AATATGCACTTCTCTCTTGTGTATG 57.217 36.000 0.00 0.00 37.53 2.39
1994 2533 8.798859 AAAATATGCACTTCTCTCTTGTGTAT 57.201 30.769 0.00 0.00 39.56 2.29
2019 3152 7.901283 AAACTAGGGCAAAAGTTTAAGGTTA 57.099 32.000 8.71 0.00 42.57 2.85
2092 4077 4.022676 GGTTGAATTCTAGCCGGTTTTGAA 60.023 41.667 1.90 6.10 0.00 2.69
2107 4092 5.015178 TCAACAGATAAGGGAGGGTTGAATT 59.985 40.000 0.00 0.00 40.90 2.17
2121 4106 3.816523 GGTCAAAACCGGTCAACAGATAA 59.183 43.478 8.04 0.00 35.36 1.75
2123 4108 2.227194 GGTCAAAACCGGTCAACAGAT 58.773 47.619 8.04 0.00 35.36 2.90
2152 4213 1.002868 GTGGCATGCTGACTGGACT 60.003 57.895 18.92 0.00 0.00 3.85
2253 4315 3.129638 TCGTTTGTCCTTGTTTTTCTGGG 59.870 43.478 0.00 0.00 0.00 4.45
2257 4319 6.507299 CGGAAATTCGTTTGTCCTTGTTTTTC 60.507 38.462 0.00 0.00 0.00 2.29
2262 4324 3.207778 TCGGAAATTCGTTTGTCCTTGT 58.792 40.909 0.00 0.00 0.00 3.16
2263 4325 3.889196 TCGGAAATTCGTTTGTCCTTG 57.111 42.857 0.00 0.00 0.00 3.61
2264 4326 4.904253 TTTCGGAAATTCGTTTGTCCTT 57.096 36.364 0.00 0.00 0.00 3.36
2265 4327 4.904253 TTTTCGGAAATTCGTTTGTCCT 57.096 36.364 3.67 0.00 0.00 3.85
2267 4329 6.741448 TGATTTTTCGGAAATTCGTTTGTC 57.259 33.333 3.67 0.00 31.13 3.18
2269 4331 8.813263 TTTTTGATTTTTCGGAAATTCGTTTG 57.187 26.923 3.67 0.00 31.13 2.93
2467 4637 8.508875 GCCATGTCAGATTTTGATTTTTCAAAT 58.491 29.630 2.31 0.00 39.07 2.32
2477 4647 3.093814 AGCATGCCATGTCAGATTTTGA 58.906 40.909 15.66 0.00 0.00 2.69
2478 4648 3.119280 TCAGCATGCCATGTCAGATTTTG 60.119 43.478 15.66 0.83 34.76 2.44
2563 4734 2.951229 AACCGGTCAAGATTCAACCT 57.049 45.000 8.04 0.00 0.00 3.50
2624 5134 5.440610 CTGCCCTGGTCTAATTTACAATCT 58.559 41.667 0.00 0.00 0.00 2.40
2626 5136 4.229582 TCCTGCCCTGGTCTAATTTACAAT 59.770 41.667 0.00 0.00 0.00 2.71
2640 5150 1.208165 AACCCCTAACTCCTGCCCTG 61.208 60.000 0.00 0.00 0.00 4.45
2728 5394 9.392259 GGTAGCATAAACCTAGAAATTAACTGT 57.608 33.333 0.00 0.00 33.97 3.55
2739 5405 3.714798 TGGGGAAGGTAGCATAAACCTAG 59.285 47.826 0.00 0.00 46.85 3.02
2740 5406 3.457012 GTGGGGAAGGTAGCATAAACCTA 59.543 47.826 0.00 0.00 46.85 3.08
2742 5408 2.241430 AGTGGGGAAGGTAGCATAAACC 59.759 50.000 0.00 0.00 37.27 3.27
2743 5409 3.646736 AGTGGGGAAGGTAGCATAAAC 57.353 47.619 0.00 0.00 0.00 2.01
2747 5431 4.881157 AAAATAGTGGGGAAGGTAGCAT 57.119 40.909 0.00 0.00 0.00 3.79
2757 5441 7.996098 ACATCCGAATATAAAAATAGTGGGG 57.004 36.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.