Multiple sequence alignment - TraesCS4A01G367700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G367700 chr4A 100.000 8002 0 0 1 8002 640893422 640901423 0.000000e+00 14778.0
1 TraesCS4A01G367700 chr4A 100.000 30 0 0 277 306 170115888 170115917 1.000000e-03 56.5
2 TraesCS4A01G367700 chr5D 92.745 2991 134 24 3830 6787 531514059 531511119 0.000000e+00 4244.0
3 TraesCS4A01G367700 chr5D 91.657 1702 93 21 1592 3268 531516297 531514620 0.000000e+00 2311.0
4 TraesCS4A01G367700 chr5D 88.563 988 59 17 1 963 531518331 531517373 0.000000e+00 1149.0
5 TraesCS4A01G367700 chr5D 79.890 1268 137 66 6814 7997 531511059 531509826 0.000000e+00 821.0
6 TraesCS4A01G367700 chr5D 89.951 617 24 14 997 1586 531516967 531516362 0.000000e+00 761.0
7 TraesCS4A01G367700 chr5D 92.195 410 26 4 3431 3838 531514600 531514195 6.960000e-160 575.0
8 TraesCS4A01G367700 chr5D 96.842 95 3 0 3258 3352 385037230 385037324 8.310000e-35 159.0
9 TraesCS4A01G367700 chr5D 91.566 83 5 2 213 294 209640051 209639970 6.560000e-21 113.0
10 TraesCS4A01G367700 chr5D 95.000 40 2 0 7775 7814 531443133 531443094 6.700000e-06 63.9
11 TraesCS4A01G367700 chr5B 94.666 2156 95 10 4754 6894 670831443 670829293 0.000000e+00 3326.0
12 TraesCS4A01G367700 chr5B 97.186 853 23 1 2105 2957 670834225 670833374 0.000000e+00 1441.0
13 TraesCS4A01G367700 chr5B 91.435 934 37 8 3830 4755 670832424 670831526 0.000000e+00 1242.0
14 TraesCS4A01G367700 chr5B 86.537 1129 62 35 486 1579 670835787 670834714 0.000000e+00 1160.0
15 TraesCS4A01G367700 chr5B 85.294 816 66 16 6979 7763 670828950 670828158 0.000000e+00 793.0
16 TraesCS4A01G367700 chr5B 93.636 440 23 4 3402 3838 670832976 670832539 0.000000e+00 652.0
17 TraesCS4A01G367700 chr5B 88.503 461 47 1 25 485 670836360 670835906 3.260000e-153 553.0
18 TraesCS4A01G367700 chr5B 94.792 288 15 0 2958 3245 670833258 670832971 4.400000e-122 449.0
19 TraesCS4A01G367700 chr5B 83.077 455 39 8 1592 2021 670834663 670834222 5.860000e-101 379.0
20 TraesCS4A01G367700 chr5B 93.333 75 5 0 2036 2110 582158207 582158133 2.360000e-20 111.0
21 TraesCS4A01G367700 chr5B 86.458 96 10 3 192 284 223114363 223114268 1.420000e-17 102.0
22 TraesCS4A01G367700 chr5B 96.610 59 2 0 128 186 593580022 593580080 1.840000e-16 99.0
23 TraesCS4A01G367700 chr7D 86.170 188 23 3 1 185 102993695 102993882 4.900000e-47 200.0
24 TraesCS4A01G367700 chr4D 85.027 187 25 3 1 185 374519057 374519242 3.810000e-43 187.0
25 TraesCS4A01G367700 chr4D 91.549 71 6 0 2036 2106 67330928 67330998 1.840000e-16 99.0
26 TraesCS4A01G367700 chr1D 83.708 178 28 1 1 178 311893836 311893660 4.970000e-37 167.0
27 TraesCS4A01G367700 chr1A 100.000 88 0 0 3267 3354 535487287 535487200 6.430000e-36 163.0
28 TraesCS4A01G367700 chr1A 89.011 91 4 4 2017 2106 498666537 498666622 3.050000e-19 108.0
29 TraesCS4A01G367700 chr5A 98.889 90 1 0 3262 3351 70174900 70174989 2.310000e-35 161.0
30 TraesCS4A01G367700 chr5A 87.179 78 8 2 109 185 603756911 603756987 3.980000e-13 87.9
31 TraesCS4A01G367700 chr7B 97.826 92 2 0 3266 3357 85040619 85040528 8.310000e-35 159.0
32 TraesCS4A01G367700 chr7B 91.358 81 6 1 97 176 616552051 616552131 8.490000e-20 110.0
33 TraesCS4A01G367700 chr7B 100.000 43 0 0 1257 1299 744953963 744954005 6.660000e-11 80.5
34 TraesCS4A01G367700 chr6A 97.849 93 1 1 3266 3358 382867359 382867450 8.310000e-35 159.0
35 TraesCS4A01G367700 chr6A 87.629 97 8 2 2013 2109 356112335 356112243 8.490000e-20 110.0
36 TraesCS4A01G367700 chr2A 96.875 96 2 1 3262 3356 721607856 721607951 8.310000e-35 159.0
37 TraesCS4A01G367700 chr2A 85.437 103 10 5 194 293 523864818 523864918 1.420000e-17 102.0
38 TraesCS4A01G367700 chr4B 97.802 91 2 0 3267 3357 525393006 525393096 2.990000e-34 158.0
39 TraesCS4A01G367700 chr4B 92.000 75 6 0 238 312 173358886 173358812 1.100000e-18 106.0
40 TraesCS4A01G367700 chr7A 95.918 98 1 3 3266 3360 618684969 618684872 1.080000e-33 156.0
41 TraesCS4A01G367700 chr7A 87.234 94 7 3 2014 2106 33885899 33885810 1.420000e-17 102.0
42 TraesCS4A01G367700 chr2B 89.655 116 6 5 3264 3378 538631113 538631003 8.370000e-30 143.0
43 TraesCS4A01G367700 chr2B 93.421 76 4 1 2036 2110 224584450 224584375 2.360000e-20 111.0
44 TraesCS4A01G367700 chr2B 87.778 90 7 4 199 285 458244189 458244277 1.420000e-17 102.0
45 TraesCS4A01G367700 chr2B 91.525 59 5 0 184 242 790223934 790223992 1.850000e-11 82.4
46 TraesCS4A01G367700 chr2D 86.408 103 9 5 194 293 387188114 387188214 3.050000e-19 108.0
47 TraesCS4A01G367700 chr6D 90.244 82 4 4 213 292 150157711 150157632 3.950000e-18 104.0
48 TraesCS4A01G367700 chr3D 92.958 71 5 0 2036 2106 26655342 26655412 3.950000e-18 104.0
49 TraesCS4A01G367700 chr3D 84.783 92 10 2 2017 2108 375182951 375182864 1.110000e-13 89.8
50 TraesCS4A01G367700 chr3D 93.220 59 4 0 120 178 191555452 191555510 3.980000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G367700 chr4A 640893422 640901423 8001 False 14778.000000 14778 100.000000 1 8002 1 chr4A.!!$F2 8001
1 TraesCS4A01G367700 chr5D 531509826 531518331 8505 True 1643.500000 4244 89.166833 1 7997 6 chr5D.!!$R3 7996
2 TraesCS4A01G367700 chr5B 670828158 670836360 8202 True 1110.555556 3326 90.569556 25 7763 9 chr5B.!!$R3 7738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 625 0.038744 CAAGGAGGCAAGGACCACAT 59.961 55.000 0.00 0.0 0.00 3.21 F
1429 1976 0.037326 TTCAGGTTAGCTGGCTGTCG 60.037 55.000 11.67 0.0 0.00 4.35 F
1818 2454 0.174162 GGCAATTGTCAGATGGCACC 59.826 55.000 4.85 0.0 39.25 5.01 F
3276 4035 1.278985 TGTTGCCATGTACTCCCTCTG 59.721 52.381 0.00 0.0 0.00 3.35 F
3841 4748 0.193321 AACCCCTGGGCTGGATTTTT 59.807 50.000 7.39 0.0 39.32 1.94 F
3913 4821 0.796927 GTGCTTTGAGTCCTAACGGC 59.203 55.000 0.00 0.0 0.00 5.68 F
5512 6516 1.262151 GCTTTGTTGTGCATTTGCCTG 59.738 47.619 0.00 0.0 41.18 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 2099 0.036105 TCACCGAATGCTGCACTGAT 60.036 50.000 3.57 0.00 0.00 2.90 R
2675 3311 1.088340 CAAGCATCTGGTCAGCCTCG 61.088 60.000 0.00 0.00 35.27 4.63 R
3350 4109 1.664151 GCTGCCTTCGCGTAAGTAAAT 59.336 47.619 5.77 0.00 38.08 1.40 R
4988 5987 0.795698 TGCATCCAACATCACGTTCG 59.204 50.000 0.00 0.00 34.86 3.95 R
5571 6575 0.741221 GTCACCGATCCCTGCAGTTC 60.741 60.000 13.81 5.76 0.00 3.01 R
5612 6616 3.294038 AAGAAGCCTCTTGCATATGCT 57.706 42.857 27.13 5.37 44.83 3.79 R
7111 8430 0.314302 GGCATACGCGTAGATCAGGT 59.686 55.000 24.78 2.48 39.92 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.067197 AGGGCCGGGCATTATACTC 58.933 57.895 30.95 9.56 0.00 2.59
19 20 1.002502 GGGCCGGGCATTATACTCC 60.003 63.158 30.95 6.12 0.00 3.85
43 45 1.115467 CCCCTCTCACGTCTATGCTT 58.885 55.000 0.00 0.00 0.00 3.91
48 50 3.129462 CCTCTCACGTCTATGCTTCTTCA 59.871 47.826 0.00 0.00 0.00 3.02
63 65 4.923871 GCTTCTTCAGAGTTTATGTCGTGA 59.076 41.667 0.00 0.00 0.00 4.35
118 120 8.813282 GTTTATTGTGTTTACTGGGTTTTGAAG 58.187 33.333 0.00 0.00 0.00 3.02
161 163 5.003804 AGTTTATGCACCTAACCAGTTCAG 58.996 41.667 0.00 0.00 0.00 3.02
261 264 2.431954 AGCTTCATGCACTAGCCAAT 57.568 45.000 11.63 0.00 45.94 3.16
338 341 7.055667 AGGTAATATGGATAGTATGCGATGG 57.944 40.000 0.00 0.00 0.00 3.51
340 343 6.701841 GGTAATATGGATAGTATGCGATGGTG 59.298 42.308 0.00 0.00 0.00 4.17
349 352 5.734855 AGTATGCGATGGTGATTTAACAC 57.265 39.130 0.00 0.00 39.70 3.32
409 412 4.902443 TCGCCATAAAAACAACAGTTCA 57.098 36.364 0.00 0.00 0.00 3.18
430 433 0.456221 ACAACCTCGCCATCTACTCG 59.544 55.000 0.00 0.00 0.00 4.18
442 445 5.051641 CGCCATCTACTCGTATGTTTCTTTC 60.052 44.000 0.00 0.00 0.00 2.62
466 469 2.749621 GGTTGTCATTGGTCAGGATCAC 59.250 50.000 0.00 0.00 0.00 3.06
483 612 3.616956 TCACTTGTGCTATCCAAGGAG 57.383 47.619 5.28 0.00 42.84 3.69
484 613 2.237143 TCACTTGTGCTATCCAAGGAGG 59.763 50.000 5.28 0.00 42.84 4.30
485 614 1.065126 ACTTGTGCTATCCAAGGAGGC 60.065 52.381 9.09 9.09 42.84 4.70
488 617 1.065199 TGTGCTATCCAAGGAGGCAAG 60.065 52.381 17.07 4.35 38.06 4.01
489 618 0.548031 TGCTATCCAAGGAGGCAAGG 59.452 55.000 14.31 0.00 35.25 3.61
492 621 1.141858 CTATCCAAGGAGGCAAGGACC 59.858 57.143 0.00 0.00 37.29 4.46
493 622 0.846427 ATCCAAGGAGGCAAGGACCA 60.846 55.000 0.00 0.00 37.29 4.02
494 623 1.303643 CCAAGGAGGCAAGGACCAC 60.304 63.158 0.00 0.00 0.00 4.16
495 624 1.455849 CAAGGAGGCAAGGACCACA 59.544 57.895 0.00 0.00 0.00 4.17
496 625 0.038744 CAAGGAGGCAAGGACCACAT 59.961 55.000 0.00 0.00 0.00 3.21
497 626 1.281867 CAAGGAGGCAAGGACCACATA 59.718 52.381 0.00 0.00 0.00 2.29
498 627 1.668826 AGGAGGCAAGGACCACATAA 58.331 50.000 0.00 0.00 0.00 1.90
499 628 1.282157 AGGAGGCAAGGACCACATAAC 59.718 52.381 0.00 0.00 0.00 1.89
500 629 1.369625 GAGGCAAGGACCACATAACG 58.630 55.000 0.00 0.00 0.00 3.18
527 656 5.378332 TCAACCTTCAACGGGATTTTTAGA 58.622 37.500 0.00 0.00 0.00 2.10
553 682 5.184864 TCCAAATAATGTGCGATGAAAAGGT 59.815 36.000 0.00 0.00 0.00 3.50
580 709 7.094848 TGCCACCATTGATGATATTATAACACG 60.095 37.037 0.00 0.00 0.00 4.49
581 710 7.243487 CCACCATTGATGATATTATAACACGC 58.757 38.462 0.00 0.00 0.00 5.34
585 715 8.720562 CCATTGATGATATTATAACACGCAGAA 58.279 33.333 0.00 0.00 0.00 3.02
600 730 4.031426 CACGCAGAACTAACCGAGTAAATC 59.969 45.833 0.00 0.00 37.44 2.17
634 765 1.003718 AACGGGCCTAAGAGCACAC 60.004 57.895 0.84 0.00 35.19 3.82
635 766 2.509336 CGGGCCTAAGAGCACACG 60.509 66.667 0.84 0.00 35.19 4.49
648 779 2.216046 AGCACACGATATCTTGCCATG 58.784 47.619 9.02 2.16 35.47 3.66
791 925 2.025863 GCATAGGGACAAGCTTGGCAT 61.026 52.381 32.60 22.44 38.18 4.40
792 926 2.381911 CATAGGGACAAGCTTGGCATT 58.618 47.619 32.60 21.62 38.18 3.56
793 927 1.838112 TAGGGACAAGCTTGGCATTG 58.162 50.000 32.60 6.98 38.18 2.82
794 928 0.901580 AGGGACAAGCTTGGCATTGG 60.902 55.000 32.60 5.35 38.18 3.16
795 929 0.899717 GGGACAAGCTTGGCATTGGA 60.900 55.000 32.60 0.00 38.18 3.53
796 930 0.529378 GGACAAGCTTGGCATTGGAG 59.471 55.000 32.60 3.78 38.18 3.86
797 931 1.538047 GACAAGCTTGGCATTGGAGA 58.462 50.000 27.73 0.00 35.83 3.71
798 932 1.471684 GACAAGCTTGGCATTGGAGAG 59.528 52.381 27.73 0.00 35.83 3.20
799 933 0.172803 CAAGCTTGGCATTGGAGAGC 59.827 55.000 19.14 0.00 0.00 4.09
800 934 0.251474 AAGCTTGGCATTGGAGAGCA 60.251 50.000 0.00 0.00 35.86 4.26
801 935 0.680280 AGCTTGGCATTGGAGAGCAG 60.680 55.000 9.08 0.00 35.86 4.24
878 1033 2.994643 AAACCCTGGCAAACCCCTCG 62.995 60.000 0.00 0.00 33.59 4.63
974 1130 1.129058 TTCTTATCGCTTCCCTCCCC 58.871 55.000 0.00 0.00 0.00 4.81
976 1132 2.100879 CTTATCGCTTCCCTCCCCCG 62.101 65.000 0.00 0.00 0.00 5.73
995 1523 2.652113 CCCCTTCTCCCCCTCCTCT 61.652 68.421 0.00 0.00 0.00 3.69
1218 1752 1.583967 CAGCGACGACGAGGATGAC 60.584 63.158 12.29 0.00 42.66 3.06
1341 1887 0.743345 AGAAGCGCGGAATTACCCAC 60.743 55.000 8.83 0.00 34.64 4.61
1387 1933 5.068855 TGAATTTCTGTCATGTTTTGGAGCA 59.931 36.000 0.00 0.00 0.00 4.26
1401 1947 4.935352 TTGGAGCAGCTTAATTGTGTTT 57.065 36.364 0.00 0.00 0.00 2.83
1402 1948 4.241590 TGGAGCAGCTTAATTGTGTTTG 57.758 40.909 0.00 0.00 0.00 2.93
1403 1949 3.888323 TGGAGCAGCTTAATTGTGTTTGA 59.112 39.130 0.00 0.00 0.00 2.69
1405 1952 3.888934 AGCAGCTTAATTGTGTTTGACG 58.111 40.909 0.00 0.00 0.00 4.35
1418 1965 4.096532 TGTGTTTGACGCAATTTCAGGTTA 59.903 37.500 0.00 0.00 35.42 2.85
1419 1966 4.675114 GTGTTTGACGCAATTTCAGGTTAG 59.325 41.667 0.00 0.00 0.00 2.34
1420 1967 3.552604 TTGACGCAATTTCAGGTTAGC 57.447 42.857 0.00 0.00 0.00 3.09
1421 1968 2.778299 TGACGCAATTTCAGGTTAGCT 58.222 42.857 0.00 0.00 0.00 3.32
1428 1975 2.185004 TTTCAGGTTAGCTGGCTGTC 57.815 50.000 11.67 0.00 0.00 3.51
1429 1976 0.037326 TTCAGGTTAGCTGGCTGTCG 60.037 55.000 11.67 0.00 0.00 4.35
1430 1977 1.448540 CAGGTTAGCTGGCTGTCGG 60.449 63.158 3.14 0.00 0.00 4.79
1431 1978 2.125106 GGTTAGCTGGCTGTCGGG 60.125 66.667 5.25 0.00 0.00 5.14
1432 1979 2.656069 GGTTAGCTGGCTGTCGGGA 61.656 63.158 5.25 0.00 0.00 5.14
1434 1981 3.019003 TTAGCTGGCTGTCGGGAGC 62.019 63.158 5.25 0.00 38.34 4.70
1437 1984 3.385384 CTGGCTGTCGGGAGCAGA 61.385 66.667 8.56 0.00 41.08 4.26
1438 1985 3.655810 CTGGCTGTCGGGAGCAGAC 62.656 68.421 8.56 3.16 41.08 3.51
1439 1986 3.386237 GGCTGTCGGGAGCAGACT 61.386 66.667 8.56 0.00 41.08 3.24
1453 2002 3.541224 AGACTGGAGTGGTGTCTGT 57.459 52.632 0.00 0.00 39.29 3.41
1493 2045 7.721399 AGTGAATTCAGTTGGTCTTGTAATTCT 59.279 33.333 8.80 0.00 33.28 2.40
1494 2046 8.352942 GTGAATTCAGTTGGTCTTGTAATTCTT 58.647 33.333 8.80 0.00 33.28 2.52
1495 2047 8.352201 TGAATTCAGTTGGTCTTGTAATTCTTG 58.648 33.333 3.38 0.00 33.28 3.02
1496 2048 6.633500 TTCAGTTGGTCTTGTAATTCTTGG 57.367 37.500 0.00 0.00 0.00 3.61
1497 2049 5.935945 TCAGTTGGTCTTGTAATTCTTGGA 58.064 37.500 0.00 0.00 0.00 3.53
1498 2050 5.763204 TCAGTTGGTCTTGTAATTCTTGGAC 59.237 40.000 0.00 0.00 0.00 4.02
1499 2051 5.048713 CAGTTGGTCTTGTAATTCTTGGACC 60.049 44.000 11.33 11.33 42.27 4.46
1500 2052 4.993705 TGGTCTTGTAATTCTTGGACCT 57.006 40.909 16.22 0.00 42.37 3.85
1523 2075 5.685520 TGGTGCATACATAGGTTAACTGA 57.314 39.130 5.42 0.00 0.00 3.41
1570 2122 1.888512 AGTGCAGCATTCGGTGAATTT 59.111 42.857 0.00 0.00 43.56 1.82
1580 2132 5.675323 GCATTCGGTGAATTTAGTTGGTACC 60.675 44.000 4.43 4.43 28.87 3.34
1586 2138 3.989167 TGAATTTAGTTGGTACCGTCGTG 59.011 43.478 7.57 0.00 0.00 4.35
1587 2139 3.665745 ATTTAGTTGGTACCGTCGTGT 57.334 42.857 7.57 0.00 0.00 4.49
1589 2141 4.576216 TTTAGTTGGTACCGTCGTGTTA 57.424 40.909 7.57 0.00 0.00 2.41
1590 2142 2.712057 AGTTGGTACCGTCGTGTTAG 57.288 50.000 7.57 0.00 0.00 2.34
1605 2216 5.296531 GTCGTGTTAGTTTTAGTGGGGAAAA 59.703 40.000 0.00 0.00 0.00 2.29
1606 2217 5.296531 TCGTGTTAGTTTTAGTGGGGAAAAC 59.703 40.000 3.38 3.38 43.87 2.43
1610 2221 7.013942 GTGTTAGTTTTAGTGGGGAAAACAGAT 59.986 37.037 12.13 0.00 45.25 2.90
1626 2237 5.344743 AACAGATGGTAGTGGTGTCATAG 57.655 43.478 0.00 0.00 0.00 2.23
1661 2272 5.699097 GTGCCAACACTTGAACCTAATAA 57.301 39.130 0.00 0.00 43.85 1.40
1662 2273 6.079424 GTGCCAACACTTGAACCTAATAAA 57.921 37.500 0.00 0.00 43.85 1.40
1663 2274 6.687604 GTGCCAACACTTGAACCTAATAAAT 58.312 36.000 0.00 0.00 43.85 1.40
1664 2275 7.822658 GTGCCAACACTTGAACCTAATAAATA 58.177 34.615 0.00 0.00 43.85 1.40
1693 2304 6.666980 TCCATGAACCCATAATTGATTCAACA 59.333 34.615 0.15 0.00 33.29 3.33
1757 2391 6.488344 TGTTGTAGCATTCCATTGTAAGTCAA 59.512 34.615 0.00 0.00 40.53 3.18
1759 2395 7.144722 TGTAGCATTCCATTGTAAGTCAAAG 57.855 36.000 0.00 0.00 39.62 2.77
1764 2400 6.514870 GCATTCCATTGTAAGTCAAAGTGTCA 60.515 38.462 0.00 0.00 39.62 3.58
1765 2401 7.424803 CATTCCATTGTAAGTCAAAGTGTCAA 58.575 34.615 0.00 0.00 39.62 3.18
1766 2402 7.397892 TTCCATTGTAAGTCAAAGTGTCAAA 57.602 32.000 0.00 0.00 39.62 2.69
1767 2403 6.791303 TCCATTGTAAGTCAAAGTGTCAAAC 58.209 36.000 0.00 0.00 39.62 2.93
1768 2404 6.601613 TCCATTGTAAGTCAAAGTGTCAAACT 59.398 34.615 0.00 0.00 42.60 2.66
1769 2405 6.692681 CCATTGTAAGTCAAAGTGTCAAACTG 59.307 38.462 0.00 0.00 39.81 3.16
1770 2406 6.811253 TTGTAAGTCAAAGTGTCAAACTGT 57.189 33.333 0.00 0.00 39.81 3.55
1771 2407 6.417191 TGTAAGTCAAAGTGTCAAACTGTC 57.583 37.500 0.00 0.00 39.81 3.51
1792 2428 2.416547 CCTGTTCTCACAAATAGCACCG 59.583 50.000 0.00 0.00 30.36 4.94
1818 2454 0.174162 GGCAATTGTCAGATGGCACC 59.826 55.000 4.85 0.00 39.25 5.01
1862 2498 5.296748 CATTTGTTCCCCTTTTTCGTGATT 58.703 37.500 0.00 0.00 0.00 2.57
1863 2499 4.577834 TTGTTCCCCTTTTTCGTGATTC 57.422 40.909 0.00 0.00 0.00 2.52
1864 2500 2.550606 TGTTCCCCTTTTTCGTGATTCG 59.449 45.455 0.00 0.00 41.41 3.34
1865 2501 2.551032 GTTCCCCTTTTTCGTGATTCGT 59.449 45.455 0.00 0.00 40.80 3.85
1866 2502 2.147958 TCCCCTTTTTCGTGATTCGTG 58.852 47.619 0.00 0.00 40.80 4.35
1867 2503 2.147958 CCCCTTTTTCGTGATTCGTGA 58.852 47.619 0.00 0.00 40.80 4.35
1869 2505 3.190535 CCCCTTTTTCGTGATTCGTGAAT 59.809 43.478 0.00 0.00 40.80 2.57
1939 2575 7.105588 TGATAACACATTGTCTAAGTCATGCT 58.894 34.615 0.00 0.00 0.00 3.79
2033 2669 5.258841 TGTTATCTACTCCTTCCGTCTCAA 58.741 41.667 0.00 0.00 0.00 3.02
2034 2670 5.892119 TGTTATCTACTCCTTCCGTCTCAAT 59.108 40.000 0.00 0.00 0.00 2.57
2035 2671 6.039493 TGTTATCTACTCCTTCCGTCTCAATC 59.961 42.308 0.00 0.00 0.00 2.67
2036 2672 3.964411 TCTACTCCTTCCGTCTCAATCA 58.036 45.455 0.00 0.00 0.00 2.57
2095 2731 7.771183 TGCAAAAACATCTTATATTCTGGGAC 58.229 34.615 0.00 0.00 0.00 4.46
2187 2823 4.024387 TGGTCGTTTACTGATTTGTCTTGC 60.024 41.667 0.00 0.00 0.00 4.01
2630 3266 7.255590 CCAGGTCGCCTAATTGATTTGATAAAT 60.256 37.037 0.00 0.00 29.64 1.40
2675 3311 5.422650 AGAAGTTAGGTATCTGGTCCTTGAC 59.577 44.000 0.00 0.00 35.51 3.18
2732 3368 6.860080 AGAAGATGTGGAAACAATATTGCAG 58.140 36.000 15.48 0.00 46.06 4.41
2848 3484 4.352009 ACAATTGATTTGGTATGGCCTCA 58.648 39.130 13.59 0.00 39.80 3.86
2981 3737 7.594015 CCAGAGCATTCTTGTATTTATTGCATC 59.406 37.037 0.00 0.00 0.00 3.91
3024 3780 8.689061 ACAGTCATGCATGTTAATTGTTATGAT 58.311 29.630 25.43 0.00 0.00 2.45
3075 3831 7.012327 TGTGCTATATTCTGTGTAAATTCTGGC 59.988 37.037 0.00 0.00 0.00 4.85
3109 3865 4.320935 GGTATTTTGACACATGTGACCCAC 60.321 45.833 31.94 17.32 34.56 4.61
3246 4005 8.754991 TGGAACTTAACAAAGGAGTATTTGAA 57.245 30.769 6.22 0.00 41.71 2.69
3268 4027 5.897377 AGGATTTTACTGTTGCCATGTAC 57.103 39.130 0.00 0.00 0.00 2.90
3269 4028 5.570320 AGGATTTTACTGTTGCCATGTACT 58.430 37.500 0.00 0.00 0.00 2.73
3270 4029 5.648092 AGGATTTTACTGTTGCCATGTACTC 59.352 40.000 0.00 0.00 0.00 2.59
3271 4030 5.163652 GGATTTTACTGTTGCCATGTACTCC 60.164 44.000 0.00 0.00 0.00 3.85
3272 4031 3.343941 TTACTGTTGCCATGTACTCCC 57.656 47.619 0.00 0.00 0.00 4.30
3273 4032 1.362224 ACTGTTGCCATGTACTCCCT 58.638 50.000 0.00 0.00 0.00 4.20
3274 4033 1.279271 ACTGTTGCCATGTACTCCCTC 59.721 52.381 0.00 0.00 0.00 4.30
3275 4034 1.556911 CTGTTGCCATGTACTCCCTCT 59.443 52.381 0.00 0.00 0.00 3.69
3276 4035 1.278985 TGTTGCCATGTACTCCCTCTG 59.721 52.381 0.00 0.00 0.00 3.35
3277 4036 1.279271 GTTGCCATGTACTCCCTCTGT 59.721 52.381 0.00 0.00 0.00 3.41
3278 4037 2.500098 GTTGCCATGTACTCCCTCTGTA 59.500 50.000 0.00 0.00 0.00 2.74
3279 4038 2.827755 TGCCATGTACTCCCTCTGTAA 58.172 47.619 0.00 0.00 0.00 2.41
3280 4039 3.178046 TGCCATGTACTCCCTCTGTAAA 58.822 45.455 0.00 0.00 0.00 2.01
3281 4040 3.055385 TGCCATGTACTCCCTCTGTAAAC 60.055 47.826 0.00 0.00 0.00 2.01
3282 4041 3.197983 GCCATGTACTCCCTCTGTAAACT 59.802 47.826 0.00 0.00 0.00 2.66
3283 4042 4.404715 GCCATGTACTCCCTCTGTAAACTA 59.595 45.833 0.00 0.00 0.00 2.24
3284 4043 5.105064 GCCATGTACTCCCTCTGTAAACTAA 60.105 44.000 0.00 0.00 0.00 2.24
3285 4044 6.408206 GCCATGTACTCCCTCTGTAAACTAAT 60.408 42.308 0.00 0.00 0.00 1.73
3286 4045 7.201974 GCCATGTACTCCCTCTGTAAACTAATA 60.202 40.741 0.00 0.00 0.00 0.98
3287 4046 8.871125 CCATGTACTCCCTCTGTAAACTAATAT 58.129 37.037 0.00 0.00 0.00 1.28
3293 4052 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3295 4054 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3342 4101 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3343 4102 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3344 4103 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3345 4104 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3346 4105 6.264067 ACGCTCTTATATTAGTTTACGGAGGT 59.736 38.462 0.00 0.00 0.00 3.85
3347 4106 7.445402 ACGCTCTTATATTAGTTTACGGAGGTA 59.555 37.037 0.00 0.00 0.00 3.08
3348 4107 7.961827 CGCTCTTATATTAGTTTACGGAGGTAG 59.038 40.741 0.00 0.00 0.00 3.18
3349 4108 8.791675 GCTCTTATATTAGTTTACGGAGGTAGT 58.208 37.037 0.00 0.00 0.00 2.73
3368 4127 4.114058 AGTATTTACTTACGCGAAGGCA 57.886 40.909 15.93 2.14 39.74 4.75
3370 4129 1.073177 TTTACTTACGCGAAGGCAGC 58.927 50.000 15.93 0.00 39.74 5.25
3371 4130 0.738412 TTACTTACGCGAAGGCAGCC 60.738 55.000 15.93 1.84 39.74 4.85
3372 4131 1.879737 TACTTACGCGAAGGCAGCCA 61.880 55.000 15.93 0.00 39.74 4.75
3373 4132 2.434185 TTACGCGAAGGCAGCCAG 60.434 61.111 15.93 5.66 39.92 4.85
3374 4133 2.835701 CTTACGCGAAGGCAGCCAGA 62.836 60.000 15.93 0.00 39.92 3.86
3375 4134 2.443260 TTACGCGAAGGCAGCCAGAA 62.443 55.000 15.93 0.00 39.92 3.02
3376 4135 2.443260 TACGCGAAGGCAGCCAGAAA 62.443 55.000 15.93 0.00 39.92 2.52
3377 4136 2.616330 CGCGAAGGCAGCCAGAAAA 61.616 57.895 15.80 0.00 39.92 2.29
3378 4137 1.885871 GCGAAGGCAGCCAGAAAAT 59.114 52.632 15.80 0.00 39.62 1.82
3379 4138 0.244721 GCGAAGGCAGCCAGAAAATT 59.755 50.000 15.80 0.00 39.62 1.82
3380 4139 1.337167 GCGAAGGCAGCCAGAAAATTT 60.337 47.619 15.80 0.00 39.62 1.82
3381 4140 2.867647 GCGAAGGCAGCCAGAAAATTTT 60.868 45.455 15.80 2.28 39.62 1.82
3382 4141 2.733026 CGAAGGCAGCCAGAAAATTTTG 59.267 45.455 15.80 0.00 0.00 2.44
3383 4142 3.732212 GAAGGCAGCCAGAAAATTTTGT 58.268 40.909 15.80 0.47 0.00 2.83
3384 4143 4.558496 CGAAGGCAGCCAGAAAATTTTGTA 60.558 41.667 15.80 0.00 0.00 2.41
3385 4144 4.525912 AGGCAGCCAGAAAATTTTGTAG 57.474 40.909 15.80 0.00 0.00 2.74
3386 4145 3.897505 AGGCAGCCAGAAAATTTTGTAGT 59.102 39.130 15.80 0.00 0.00 2.73
3387 4146 5.076873 AGGCAGCCAGAAAATTTTGTAGTA 58.923 37.500 15.80 0.00 0.00 1.82
3388 4147 5.048013 AGGCAGCCAGAAAATTTTGTAGTAC 60.048 40.000 15.80 0.00 0.00 2.73
3389 4148 5.048013 GGCAGCCAGAAAATTTTGTAGTACT 60.048 40.000 8.47 0.00 0.00 2.73
3390 4149 6.086871 GCAGCCAGAAAATTTTGTAGTACTC 58.913 40.000 8.47 0.00 0.00 2.59
3391 4150 6.072452 GCAGCCAGAAAATTTTGTAGTACTCT 60.072 38.462 8.47 0.00 0.00 3.24
3392 4151 7.522236 GCAGCCAGAAAATTTTGTAGTACTCTT 60.522 37.037 8.47 0.00 0.00 2.85
3393 4152 8.017946 CAGCCAGAAAATTTTGTAGTACTCTTC 58.982 37.037 8.47 0.00 0.00 2.87
3394 4153 7.939588 AGCCAGAAAATTTTGTAGTACTCTTCT 59.060 33.333 8.47 0.00 0.00 2.85
3395 4154 9.216117 GCCAGAAAATTTTGTAGTACTCTTCTA 57.784 33.333 8.47 0.00 0.00 2.10
3425 4184 3.383620 TGCTTAAATGCAAAGTGGGTG 57.616 42.857 0.00 0.00 40.29 4.61
3525 4285 4.497473 TTTTTAGCGCAACATGCTACTT 57.503 36.364 11.47 0.00 44.16 2.24
3578 4338 6.035866 GTGAGATATATGCTGCTATGCTTCAC 59.964 42.308 0.00 3.90 0.00 3.18
3585 4345 2.478134 GCTGCTATGCTTCACTATTCGG 59.522 50.000 0.00 0.00 0.00 4.30
3595 4355 7.209471 TGCTTCACTATTCGGTTTTTATGTT 57.791 32.000 0.00 0.00 0.00 2.71
3625 4385 3.899734 TCATTTGTTCGCTCCATGTTTG 58.100 40.909 0.00 0.00 0.00 2.93
3715 4475 1.537202 ACTTCAAAGCGCACCATTCTC 59.463 47.619 11.47 0.00 0.00 2.87
3835 4596 2.043953 GCTTAACCCCTGGGCTGG 60.044 66.667 7.39 0.00 39.32 4.85
3836 4597 2.612493 GCTTAACCCCTGGGCTGGA 61.612 63.158 7.39 0.00 39.32 3.86
3841 4748 0.193321 AACCCCTGGGCTGGATTTTT 59.807 50.000 7.39 0.00 39.32 1.94
3878 4785 4.817517 CAGTCTCGGTTTACCAGTTACAT 58.182 43.478 0.00 0.00 35.14 2.29
3905 4813 5.880341 ACAACTACTTTTGTGCTTTGAGTC 58.120 37.500 0.00 0.00 38.31 3.36
3913 4821 0.796927 GTGCTTTGAGTCCTAACGGC 59.203 55.000 0.00 0.00 0.00 5.68
3932 4840 3.058777 CGGCGCTTGACCTTTTAAAAGTA 60.059 43.478 23.04 9.28 34.20 2.24
3937 4845 6.293027 GCGCTTGACCTTTTAAAAGTACACTA 60.293 38.462 23.04 10.03 34.20 2.74
3968 4876 5.686753 TGCTTGGACCTCTTTAGTGTTTTA 58.313 37.500 0.00 0.00 0.00 1.52
3975 4883 7.768120 TGGACCTCTTTAGTGTTTTAAACGTTA 59.232 33.333 0.00 0.00 0.00 3.18
4023 4931 9.807649 ATCCTAATTTGATCACTTTACATTTGC 57.192 29.630 0.00 0.00 0.00 3.68
4051 4961 7.042523 AGTGCAATTACTCAAATCTTTTGTTGC 60.043 33.333 13.74 13.74 38.81 4.17
4189 5099 1.613437 TCACAACATCAGCGTGAGAGA 59.387 47.619 0.00 0.00 34.83 3.10
4389 5304 4.858935 TGCTGACTGCTAAATGTTTTCAC 58.141 39.130 5.87 0.00 43.37 3.18
4423 5338 8.830580 GCATATACTATGTTTGATGACTTGTGT 58.169 33.333 0.00 0.00 0.00 3.72
4494 5409 7.017645 GCAAATTCCAAGATATATACTGCACG 58.982 38.462 0.00 0.00 0.00 5.34
4520 5435 8.964476 TTCTGTAGAACATTCAGTCTCTTTTT 57.036 30.769 0.00 0.00 0.00 1.94
4521 5436 8.594881 TCTGTAGAACATTCAGTCTCTTTTTC 57.405 34.615 0.00 0.00 0.00 2.29
4522 5437 8.424918 TCTGTAGAACATTCAGTCTCTTTTTCT 58.575 33.333 0.00 0.00 0.00 2.52
4523 5438 8.370493 TGTAGAACATTCAGTCTCTTTTTCTG 57.630 34.615 0.00 0.00 0.00 3.02
4524 5439 6.311055 AGAACATTCAGTCTCTTTTTCTGC 57.689 37.500 0.00 0.00 0.00 4.26
4525 5440 5.824624 AGAACATTCAGTCTCTTTTTCTGCA 59.175 36.000 0.00 0.00 0.00 4.41
4526 5441 5.429957 ACATTCAGTCTCTTTTTCTGCAC 57.570 39.130 0.00 0.00 0.00 4.57
4527 5442 4.276926 ACATTCAGTCTCTTTTTCTGCACC 59.723 41.667 0.00 0.00 0.00 5.01
4528 5443 3.845781 TCAGTCTCTTTTTCTGCACCT 57.154 42.857 0.00 0.00 0.00 4.00
4529 5444 4.955811 TCAGTCTCTTTTTCTGCACCTA 57.044 40.909 0.00 0.00 0.00 3.08
4530 5445 5.290493 TCAGTCTCTTTTTCTGCACCTAA 57.710 39.130 0.00 0.00 0.00 2.69
4531 5446 5.680619 TCAGTCTCTTTTTCTGCACCTAAA 58.319 37.500 0.00 0.00 0.00 1.85
4532 5447 5.527582 TCAGTCTCTTTTTCTGCACCTAAAC 59.472 40.000 0.00 0.00 0.00 2.01
4533 5448 5.296780 CAGTCTCTTTTTCTGCACCTAAACA 59.703 40.000 0.00 0.00 0.00 2.83
4534 5449 6.016777 CAGTCTCTTTTTCTGCACCTAAACAT 60.017 38.462 0.00 0.00 0.00 2.71
4535 5450 6.547510 AGTCTCTTTTTCTGCACCTAAACATT 59.452 34.615 0.00 0.00 0.00 2.71
4536 5451 6.858478 GTCTCTTTTTCTGCACCTAAACATTC 59.142 38.462 0.00 0.00 0.00 2.67
4537 5452 6.545666 TCTCTTTTTCTGCACCTAAACATTCA 59.454 34.615 0.00 0.00 0.00 2.57
4538 5453 6.738114 TCTTTTTCTGCACCTAAACATTCAG 58.262 36.000 0.00 0.00 0.00 3.02
4539 5454 6.321181 TCTTTTTCTGCACCTAAACATTCAGT 59.679 34.615 0.00 0.00 0.00 3.41
4540 5455 5.689383 TTTCTGCACCTAAACATTCAGTC 57.311 39.130 0.00 0.00 0.00 3.51
4541 5456 4.623932 TCTGCACCTAAACATTCAGTCT 57.376 40.909 0.00 0.00 0.00 3.24
4720 5635 3.197333 CACATCTCCATCTGGTCTCTTGT 59.803 47.826 0.00 0.00 36.34 3.16
4722 5637 1.552337 TCTCCATCTGGTCTCTTGTGC 59.448 52.381 0.00 0.00 36.34 4.57
4765 5764 5.123344 GGTACTGTTTCTTATCAATTGCCGT 59.877 40.000 0.00 0.00 0.00 5.68
4766 5765 5.296813 ACTGTTTCTTATCAATTGCCGTC 57.703 39.130 0.00 0.00 0.00 4.79
4785 5784 6.972328 TGCCGTCAGCTTATTAAATTCATTTC 59.028 34.615 0.00 0.00 44.23 2.17
4988 5987 4.092091 CAGCGAAGGACAGTTAAATCACTC 59.908 45.833 0.00 0.00 0.00 3.51
5015 6014 4.325204 CGTGATGTTGGATGCAAATTTGAG 59.675 41.667 22.31 0.00 0.00 3.02
5213 6212 1.294659 CTCAGCCACCTTCTTCACGC 61.295 60.000 0.00 0.00 0.00 5.34
5249 6248 2.869801 TGAGCAGGTAAAAAGTGACACG 59.130 45.455 0.00 0.00 0.00 4.49
5306 6305 9.320295 TGAATTCCACCAATCCTAACTAATTTT 57.680 29.630 2.27 0.00 0.00 1.82
5356 6359 5.482006 TCCGCTATCATTATGATCCAGTTG 58.518 41.667 11.32 2.57 38.26 3.16
5366 6369 7.828717 TCATTATGATCCAGTTGTTCTTGCTTA 59.171 33.333 0.00 0.00 0.00 3.09
5400 6403 5.936956 AGTGCCTTCTAGACTTCTGAATTTG 59.063 40.000 0.00 0.00 0.00 2.32
5418 6421 9.726232 CTGAATTTGTCCAGTTGATGTTATATG 57.274 33.333 0.00 0.00 0.00 1.78
5512 6516 1.262151 GCTTTGTTGTGCATTTGCCTG 59.738 47.619 0.00 0.00 41.18 4.85
5541 6545 4.024809 GCAGTTTTCTCTTAAGCAAGACGT 60.025 41.667 0.00 0.00 35.82 4.34
5612 6616 4.538490 ACATTACAACTTACCAGGGATCCA 59.462 41.667 15.23 0.00 0.00 3.41
5806 6822 1.260544 AGGGAAAGAAAGGTGCATGC 58.739 50.000 11.82 11.82 0.00 4.06
5857 6873 6.568869 CAGTCTCTTTTCTAGTATGTCCCTG 58.431 44.000 0.00 0.00 0.00 4.45
5914 6930 1.002868 CCAGGTCCAAGGAGCAGTG 60.003 63.158 19.38 10.16 44.24 3.66
6119 7135 9.411801 CACATTATATAGTGCAGTACTTGTAGG 57.588 37.037 2.64 0.00 40.89 3.18
6218 7235 0.971959 TGTTGCAAGATGATGGCCCC 60.972 55.000 0.00 0.00 0.00 5.80
6494 7511 1.386533 GTGGTGGCTCATCATCCTTG 58.613 55.000 0.00 0.00 0.00 3.61
6614 7631 7.848223 TCATCACTCGAATAACATCACAAAT 57.152 32.000 0.00 0.00 0.00 2.32
6622 7639 7.592938 TCGAATAACATCACAAATTGCTCTTT 58.407 30.769 0.00 0.00 0.00 2.52
6686 7705 0.454600 GTGGCATGTGCTCATCTTGG 59.545 55.000 4.84 0.00 41.70 3.61
6694 7713 5.535333 CATGTGCTCATCTTGGTTCTTTTT 58.465 37.500 0.00 0.00 31.15 1.94
6699 7718 4.279420 GCTCATCTTGGTTCTTTTTCACCT 59.721 41.667 0.00 0.00 33.76 4.00
6719 7738 9.567776 TTCACCTATGATGTTCTTTTCACTAAA 57.432 29.630 0.00 0.00 33.85 1.85
6791 7818 3.733709 CTTGCCTCAAGTCACCCTT 57.266 52.632 0.00 0.00 36.79 3.95
6813 7840 6.700520 CCTTAGTAACCTAATGCTTTACCTCG 59.299 42.308 0.00 0.00 32.82 4.63
6897 7956 7.612633 TGACCAAAACTTACTTGTACCTTTTCT 59.387 33.333 0.00 0.00 0.00 2.52
6912 8000 3.753797 CCTTTTCTTGAGCTAACACTCCC 59.246 47.826 0.00 0.00 35.72 4.30
6916 8004 0.690762 TTGAGCTAACACTCCCCCAC 59.309 55.000 0.00 0.00 35.72 4.61
6917 8005 1.198759 TGAGCTAACACTCCCCCACC 61.199 60.000 0.00 0.00 35.72 4.61
6918 8006 1.151899 AGCTAACACTCCCCCACCA 60.152 57.895 0.00 0.00 0.00 4.17
6924 8012 1.077265 CACTCCCCCACCATTTGCT 59.923 57.895 0.00 0.00 0.00 3.91
6947 8035 1.670406 CAGAAGCTTCAGTGGCGCT 60.670 57.895 27.57 1.82 35.09 5.92
6959 8047 2.505557 GGCGCTTGCTTCACATGC 60.506 61.111 7.64 0.00 44.03 4.06
6965 8053 2.537792 CTTGCTTCACATGCGGGCAG 62.538 60.000 0.00 0.00 34.37 4.85
7062 8379 2.890474 CGGGCCCGATCAGTTTCG 60.890 66.667 41.82 7.45 42.83 3.46
7111 8430 3.454573 AAGGACATCGCCGGCGTA 61.455 61.111 44.16 31.71 40.74 4.42
7115 8434 4.508128 ACATCGCCGGCGTACCTG 62.508 66.667 44.16 34.71 40.74 4.00
7116 8435 4.201679 CATCGCCGGCGTACCTGA 62.202 66.667 44.16 27.50 40.74 3.86
7120 8439 2.549198 CGCCGGCGTACCTGATCTA 61.549 63.158 39.71 0.00 34.35 1.98
7132 8468 0.313987 CTGATCTACGCGTATGCCCA 59.686 55.000 20.91 13.75 38.08 5.36
7157 8494 1.521450 GGATGGCGCGCTAGGTACTA 61.521 60.000 32.29 7.61 41.75 1.82
7158 8495 0.386985 GATGGCGCGCTAGGTACTAC 60.387 60.000 32.29 11.34 41.75 2.73
7159 8496 1.105167 ATGGCGCGCTAGGTACTACA 61.105 55.000 32.29 17.17 41.75 2.74
7178 8515 4.108699 ACAACAGTTTTGTGTGGTCATG 57.891 40.909 0.00 0.00 37.67 3.07
7240 8578 1.307691 ATGGAGAGCCTGGCCTTCT 60.308 57.895 16.57 12.90 34.31 2.85
7299 8637 7.593644 ACAGGAACATACGCTTGTTTTAATTTC 59.406 33.333 5.20 0.00 39.85 2.17
7420 8764 8.922058 AACTGTTACACGTCGATTAGAATTAT 57.078 30.769 0.00 0.00 0.00 1.28
7421 8765 8.922058 ACTGTTACACGTCGATTAGAATTATT 57.078 30.769 0.00 0.00 0.00 1.40
7427 8771 6.420008 ACACGTCGATTAGAATTATTACTGCC 59.580 38.462 0.00 0.00 0.00 4.85
7450 8794 3.058293 GTGAAATGCGGAGATGTCAAACA 60.058 43.478 0.00 0.00 0.00 2.83
7452 8796 3.559238 AATGCGGAGATGTCAAACAAC 57.441 42.857 0.00 0.00 0.00 3.32
7488 8832 4.510340 GGTTGATACGTCTGAGTTTGTTGT 59.490 41.667 0.00 0.00 0.00 3.32
7500 8848 4.095782 TGAGTTTGTTGTAGACAGGTTTGC 59.904 41.667 0.00 0.00 39.94 3.68
7512 8860 1.009335 GGTTTGCGTCGGTTGTTCC 60.009 57.895 0.00 0.00 0.00 3.62
7521 8869 3.056328 GGTTGTTCCCGGCAGCTC 61.056 66.667 0.00 0.00 0.00 4.09
7652 9019 3.517602 CATGGCTCATTTCAACATGGTG 58.482 45.455 3.69 3.69 36.25 4.17
7683 9050 0.179018 GGTCAGTGAGGCCAAACTGT 60.179 55.000 27.61 0.00 43.39 3.55
7694 9061 2.747989 GGCCAAACTGTTAGACCTTAGC 59.252 50.000 0.00 0.00 0.00 3.09
7695 9062 3.408634 GCCAAACTGTTAGACCTTAGCA 58.591 45.455 0.00 0.00 0.00 3.49
7703 9070 5.248477 ACTGTTAGACCTTAGCAGATGGAAA 59.752 40.000 5.27 0.00 0.00 3.13
7705 9072 6.539173 TGTTAGACCTTAGCAGATGGAAAAA 58.461 36.000 0.00 0.00 0.00 1.94
7706 9073 6.430000 TGTTAGACCTTAGCAGATGGAAAAAC 59.570 38.462 0.00 0.00 0.00 2.43
7709 9076 5.474876 AGACCTTAGCAGATGGAAAAACTTG 59.525 40.000 0.00 0.00 0.00 3.16
7710 9077 4.021981 ACCTTAGCAGATGGAAAAACTTGC 60.022 41.667 0.00 0.00 0.00 4.01
7711 9078 2.712057 AGCAGATGGAAAAACTTGCG 57.288 45.000 0.00 0.00 0.00 4.85
7716 9083 4.168760 CAGATGGAAAAACTTGCGATTCC 58.831 43.478 0.00 0.00 41.37 3.01
7719 9086 4.392921 TGGAAAAACTTGCGATTCCAAA 57.607 36.364 4.53 0.00 46.12 3.28
7721 9088 5.178797 TGGAAAAACTTGCGATTCCAAAAA 58.821 33.333 4.53 0.00 46.12 1.94
7722 9089 5.064071 TGGAAAAACTTGCGATTCCAAAAAC 59.936 36.000 4.53 0.00 46.12 2.43
7723 9090 5.293324 GGAAAAACTTGCGATTCCAAAAACT 59.707 36.000 0.00 0.00 40.81 2.66
7724 9091 6.183360 GGAAAAACTTGCGATTCCAAAAACTT 60.183 34.615 0.00 0.00 40.81 2.66
7725 9092 5.717038 AAACTTGCGATTCCAAAAACTTG 57.283 34.783 0.00 0.00 0.00 3.16
7726 9093 4.385358 ACTTGCGATTCCAAAAACTTGT 57.615 36.364 0.00 0.00 0.00 3.16
7727 9094 4.754322 ACTTGCGATTCCAAAAACTTGTT 58.246 34.783 0.00 0.00 0.00 2.83
7730 9097 5.710613 TGCGATTCCAAAAACTTGTTTTC 57.289 34.783 11.25 0.00 0.00 2.29
7732 9099 4.266739 GCGATTCCAAAAACTTGTTTTCGT 59.733 37.500 11.25 0.00 0.00 3.85
7736 9103 7.201401 CGATTCCAAAAACTTGTTTTCGTTTCT 60.201 33.333 11.25 0.00 32.60 2.52
7745 9112 1.971962 GTTTTCGTTTCTGCTGATGCG 59.028 47.619 9.79 9.79 43.34 4.73
7759 9126 0.598680 GATGCGCTGCTTACGGAGAT 60.599 55.000 9.73 0.00 33.29 2.75
7763 9130 1.756375 CGCTGCTTACGGAGATGTGC 61.756 60.000 0.00 0.00 0.00 4.57
7764 9131 0.740868 GCTGCTTACGGAGATGTGCA 60.741 55.000 0.00 0.00 0.00 4.57
7765 9132 1.945387 CTGCTTACGGAGATGTGCAT 58.055 50.000 0.00 0.00 0.00 3.96
7766 9133 2.803133 GCTGCTTACGGAGATGTGCATA 60.803 50.000 0.00 0.00 0.00 3.14
7767 9134 2.797156 CTGCTTACGGAGATGTGCATAC 59.203 50.000 0.00 0.00 0.00 2.39
7768 9135 1.787155 GCTTACGGAGATGTGCATACG 59.213 52.381 0.00 0.00 0.00 3.06
7769 9136 2.798499 GCTTACGGAGATGTGCATACGT 60.798 50.000 0.36 0.36 38.23 3.57
7770 9137 2.485266 TACGGAGATGTGCATACGTG 57.515 50.000 5.56 0.00 35.97 4.49
7772 9139 1.067142 ACGGAGATGTGCATACGTGTT 60.067 47.619 0.00 0.00 32.90 3.32
7773 9140 1.324435 CGGAGATGTGCATACGTGTTG 59.676 52.381 0.00 0.00 0.00 3.33
7774 9141 2.346803 GGAGATGTGCATACGTGTTGT 58.653 47.619 0.00 0.00 0.00 3.32
7784 9163 3.301835 GCATACGTGTTGTCGATGTGATC 60.302 47.826 0.00 0.00 34.70 2.92
7813 9192 3.499737 GGTCGCGCCTGGTGATTG 61.500 66.667 12.29 0.00 37.52 2.67
7815 9194 3.700970 TCGCGCCTGGTGATTGGA 61.701 61.111 12.29 0.00 0.00 3.53
7817 9196 2.877691 GCGCCTGGTGATTGGAAC 59.122 61.111 12.29 0.00 0.00 3.62
7818 9197 3.039202 GCGCCTGGTGATTGGAACG 62.039 63.158 12.29 0.00 0.00 3.95
7830 9237 3.673484 GGAACGGTGTCGACGGGA 61.673 66.667 11.62 0.00 40.11 5.14
7831 9238 2.126580 GAACGGTGTCGACGGGAG 60.127 66.667 11.62 4.89 40.11 4.30
7860 9267 3.976704 TGGCAACAGTATGGGAAGG 57.023 52.632 0.00 0.00 46.17 3.46
7864 9271 2.289565 GCAACAGTATGGGAAGGTAGC 58.710 52.381 0.00 0.00 43.62 3.58
7868 9275 2.167900 ACAGTATGGGAAGGTAGCGAAC 59.832 50.000 0.00 0.00 43.62 3.95
7899 9306 4.139786 CCAAACCATATGACATCAGAGGG 58.860 47.826 3.65 5.69 43.82 4.30
7924 9331 2.024941 GGTCTGAACCTGGGGATGAAAT 60.025 50.000 0.00 0.00 42.80 2.17
7927 9335 1.006998 TGAACCTGGGGATGAAATGGG 59.993 52.381 0.00 0.00 0.00 4.00
7931 9339 1.686115 CCTGGGGATGAAATGGGTCAC 60.686 57.143 0.00 0.00 0.00 3.67
7938 9346 2.163818 TGAAATGGGTCACGTCACTC 57.836 50.000 0.00 0.00 0.00 3.51
7939 9347 1.068474 GAAATGGGTCACGTCACTCG 58.932 55.000 0.00 0.00 46.00 4.18
7948 9356 0.939577 CACGTCACTCGGTCAGGTTG 60.940 60.000 0.00 0.00 44.69 3.77
7959 9367 1.682087 GGTCAGGTTGGGTGCTAATCC 60.682 57.143 0.00 0.00 0.00 3.01
7968 9376 3.446442 GGGTGCTAATCCCATCATGAT 57.554 47.619 1.18 1.18 44.05 2.45
7975 9383 6.262944 GTGCTAATCCCATCATGATAAACACA 59.737 38.462 8.15 0.00 0.00 3.72
7976 9384 6.262944 TGCTAATCCCATCATGATAAACACAC 59.737 38.462 8.15 0.00 0.00 3.82
7978 9386 6.704289 AATCCCATCATGATAAACACACTG 57.296 37.500 8.15 0.00 0.00 3.66
7997 9405 3.834231 ACTGTTTTTCTCATGGGAATGGG 59.166 43.478 9.29 1.28 0.00 4.00
7998 9406 4.088634 CTGTTTTTCTCATGGGAATGGGA 58.911 43.478 9.29 0.00 0.00 4.37
7999 9407 4.487804 TGTTTTTCTCATGGGAATGGGAA 58.512 39.130 9.29 0.00 39.11 3.97
8000 9408 5.092968 TGTTTTTCTCATGGGAATGGGAAT 58.907 37.500 9.29 0.00 40.38 3.01
8001 9409 5.046448 TGTTTTTCTCATGGGAATGGGAATG 60.046 40.000 9.29 0.00 40.38 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.218603 GTGTTGGAGTATAATGCCCGG 58.781 52.381 0.00 0.00 0.00 5.73
8 9 3.136626 AGAGGGGTGTTGGAGTATAATGC 59.863 47.826 0.00 0.00 0.00 3.56
18 19 1.004918 GACGTGAGAGGGGTGTTGG 60.005 63.158 0.00 0.00 0.00 3.77
19 20 1.254026 TAGACGTGAGAGGGGTGTTG 58.746 55.000 0.00 0.00 0.00 3.33
43 45 4.022329 TGCTCACGACATAAACTCTGAAGA 60.022 41.667 0.00 0.00 0.00 2.87
48 50 2.611518 GCTGCTCACGACATAAACTCT 58.388 47.619 0.00 0.00 0.00 3.24
118 120 2.869233 TGCAACCAAGAAGTTCAAGC 57.131 45.000 5.50 0.56 0.00 4.01
161 163 1.541233 CCCATAGTTCGGACTGATGGC 60.541 57.143 19.32 0.00 36.61 4.40
227 230 7.012327 GTGCATGAAGCTTAACATGGTATTAGA 59.988 37.037 22.64 0.00 45.94 2.10
261 264 1.388547 AGTTCGGACTTTTGCTTGCA 58.611 45.000 0.00 0.00 29.87 4.08
338 341 1.149987 TCGCCCACGTGTTAAATCAC 58.850 50.000 15.65 0.00 41.18 3.06
340 343 2.277084 AGATCGCCCACGTGTTAAATC 58.723 47.619 15.65 11.67 41.18 2.17
349 352 2.004583 TTGTTCTTAGATCGCCCACG 57.995 50.000 0.00 0.00 42.01 4.94
409 412 1.204941 GAGTAGATGGCGAGGTTGTGT 59.795 52.381 0.00 0.00 0.00 3.72
430 433 5.917541 TGACAACCTCGAAAGAAACATAC 57.082 39.130 0.00 0.00 41.32 2.39
442 445 1.001974 TCCTGACCAATGACAACCTCG 59.998 52.381 0.00 0.00 0.00 4.63
466 469 1.065199 TGCCTCCTTGGATAGCACAAG 60.065 52.381 9.54 0.00 43.73 3.16
483 612 1.816074 TTCGTTATGTGGTCCTTGCC 58.184 50.000 0.00 0.00 0.00 4.52
484 613 3.438781 TGATTTCGTTATGTGGTCCTTGC 59.561 43.478 0.00 0.00 0.00 4.01
485 614 5.390613 GTTGATTTCGTTATGTGGTCCTTG 58.609 41.667 0.00 0.00 0.00 3.61
488 617 4.007659 AGGTTGATTTCGTTATGTGGTCC 58.992 43.478 0.00 0.00 0.00 4.46
489 618 5.180492 TGAAGGTTGATTTCGTTATGTGGTC 59.820 40.000 0.00 0.00 0.00 4.02
492 621 5.563751 CGTTGAAGGTTGATTTCGTTATGTG 59.436 40.000 0.00 0.00 0.00 3.21
493 622 5.334569 CCGTTGAAGGTTGATTTCGTTATGT 60.335 40.000 0.00 0.00 0.00 2.29
494 623 5.086058 CCGTTGAAGGTTGATTTCGTTATG 58.914 41.667 0.00 0.00 0.00 1.90
495 624 4.155280 CCCGTTGAAGGTTGATTTCGTTAT 59.845 41.667 0.00 0.00 0.00 1.89
496 625 3.499157 CCCGTTGAAGGTTGATTTCGTTA 59.501 43.478 0.00 0.00 0.00 3.18
497 626 2.292292 CCCGTTGAAGGTTGATTTCGTT 59.708 45.455 0.00 0.00 0.00 3.85
498 627 1.877443 CCCGTTGAAGGTTGATTTCGT 59.123 47.619 0.00 0.00 0.00 3.85
499 628 2.147958 TCCCGTTGAAGGTTGATTTCG 58.852 47.619 0.00 0.00 0.00 3.46
500 629 4.783764 AATCCCGTTGAAGGTTGATTTC 57.216 40.909 0.00 0.00 0.00 2.17
527 656 6.757947 CCTTTTCATCGCACATTATTTGGAAT 59.242 34.615 0.00 0.00 0.00 3.01
553 682 8.575589 GTGTTATAATATCATCAATGGTGGCAA 58.424 33.333 0.00 0.00 0.00 4.52
580 709 4.756868 CGATTTACTCGGTTAGTTCTGC 57.243 45.455 0.00 0.00 43.82 4.26
600 730 0.363512 CGTTGCAGAAGACGATGTCG 59.636 55.000 2.49 0.11 41.53 4.35
634 765 5.292765 AGTAAGTGTCATGGCAAGATATCG 58.707 41.667 0.00 0.00 0.00 2.92
635 766 6.520272 AGAGTAAGTGTCATGGCAAGATATC 58.480 40.000 0.00 0.00 0.00 1.63
648 779 9.400638 GCATTGTGAGTATATAGAGTAAGTGTC 57.599 37.037 0.00 0.00 0.00 3.67
705 836 1.608590 GGACAAGTGTGTGTGAATGGG 59.391 52.381 0.00 0.00 38.41 4.00
713 844 5.639506 CAGATTAGGTTAGGACAAGTGTGTG 59.360 44.000 0.00 0.00 38.41 3.82
791 925 3.448093 TTCTCTCTCTCTGCTCTCCAA 57.552 47.619 0.00 0.00 0.00 3.53
792 926 3.088532 GTTTCTCTCTCTCTGCTCTCCA 58.911 50.000 0.00 0.00 0.00 3.86
793 927 3.088532 TGTTTCTCTCTCTCTGCTCTCC 58.911 50.000 0.00 0.00 0.00 3.71
794 928 4.009675 TCTGTTTCTCTCTCTCTGCTCTC 58.990 47.826 0.00 0.00 0.00 3.20
795 929 4.012374 CTCTGTTTCTCTCTCTCTGCTCT 58.988 47.826 0.00 0.00 0.00 4.09
796 930 3.129287 CCTCTGTTTCTCTCTCTCTGCTC 59.871 52.174 0.00 0.00 0.00 4.26
797 931 3.091545 CCTCTGTTTCTCTCTCTCTGCT 58.908 50.000 0.00 0.00 0.00 4.24
798 932 3.088532 TCCTCTGTTTCTCTCTCTCTGC 58.911 50.000 0.00 0.00 0.00 4.26
799 933 3.696051 CCTCCTCTGTTTCTCTCTCTCTG 59.304 52.174 0.00 0.00 0.00 3.35
800 934 3.309121 CCCTCCTCTGTTTCTCTCTCTCT 60.309 52.174 0.00 0.00 0.00 3.10
801 935 3.023832 CCCTCCTCTGTTTCTCTCTCTC 58.976 54.545 0.00 0.00 0.00 3.20
934 1090 3.567797 GAACGGATGGCTGCTCGC 61.568 66.667 0.00 0.00 38.13 5.03
976 1132 4.439901 AGGAGGGGGAGAAGGGGC 62.440 72.222 0.00 0.00 0.00 5.80
980 1136 1.074850 GGGAGAGGAGGGGGAGAAG 60.075 68.421 0.00 0.00 0.00 2.85
981 1137 2.647949 GGGGAGAGGAGGGGGAGAA 61.648 68.421 0.00 0.00 0.00 2.87
982 1138 3.036959 GGGGAGAGGAGGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
983 1139 2.731461 ATGGGGAGAGGAGGGGGAG 61.731 68.421 0.00 0.00 0.00 4.30
984 1140 2.628465 ATGGGGAGAGGAGGGGGA 60.628 66.667 0.00 0.00 0.00 4.81
985 1141 2.449322 CATGGGGAGAGGAGGGGG 60.449 72.222 0.00 0.00 0.00 5.40
995 1523 2.696125 GGAGGGAAGCCATGGGGA 60.696 66.667 15.13 0.00 35.59 4.81
1341 1887 1.918253 CACCTGGATGGGGAAGAGG 59.082 63.158 0.00 0.00 43.63 3.69
1387 1933 3.980646 TGCGTCAAACACAATTAAGCT 57.019 38.095 0.00 0.00 0.00 3.74
1401 1947 2.483877 CAGCTAACCTGAAATTGCGTCA 59.516 45.455 0.00 0.00 44.64 4.35
1402 1948 2.159517 CCAGCTAACCTGAAATTGCGTC 60.160 50.000 0.00 0.00 44.64 5.19
1403 1949 1.812571 CCAGCTAACCTGAAATTGCGT 59.187 47.619 0.00 0.00 44.64 5.24
1405 1952 1.821136 AGCCAGCTAACCTGAAATTGC 59.179 47.619 0.00 0.00 44.64 3.56
1420 1967 3.385384 TCTGCTCCCGACAGCCAG 61.385 66.667 3.43 2.23 38.80 4.85
1421 1968 3.695606 GTCTGCTCCCGACAGCCA 61.696 66.667 3.43 0.00 38.80 4.75
1428 1975 2.575993 CACTCCAGTCTGCTCCCG 59.424 66.667 0.00 0.00 0.00 5.14
1429 1976 1.915769 ACCACTCCAGTCTGCTCCC 60.916 63.158 0.00 0.00 0.00 4.30
1430 1977 1.294780 CACCACTCCAGTCTGCTCC 59.705 63.158 0.00 0.00 0.00 4.70
1431 1978 0.037790 GACACCACTCCAGTCTGCTC 60.038 60.000 0.00 0.00 0.00 4.26
1432 1979 0.470833 AGACACCACTCCAGTCTGCT 60.471 55.000 0.00 0.00 40.83 4.24
1435 1982 1.333177 GACAGACACCACTCCAGTCT 58.667 55.000 0.00 0.00 42.97 3.24
1437 1984 1.043816 CTGACAGACACCACTCCAGT 58.956 55.000 0.00 0.00 0.00 4.00
1438 1985 1.043816 ACTGACAGACACCACTCCAG 58.956 55.000 10.08 0.00 0.00 3.86
1439 1986 0.752658 CACTGACAGACACCACTCCA 59.247 55.000 10.08 0.00 0.00 3.86
1493 2045 2.897271 ATGTATGCACCAAGGTCCAA 57.103 45.000 0.00 0.00 0.00 3.53
1494 2046 2.172505 CCTATGTATGCACCAAGGTCCA 59.827 50.000 0.00 0.00 0.00 4.02
1495 2047 2.172717 ACCTATGTATGCACCAAGGTCC 59.827 50.000 8.07 0.00 33.07 4.46
1496 2048 3.560636 ACCTATGTATGCACCAAGGTC 57.439 47.619 8.07 0.00 33.07 3.85
1497 2049 5.045140 AGTTAACCTATGTATGCACCAAGGT 60.045 40.000 0.88 8.07 37.25 3.50
1498 2050 5.296780 CAGTTAACCTATGTATGCACCAAGG 59.703 44.000 0.88 7.01 0.00 3.61
1499 2051 6.037172 GTCAGTTAACCTATGTATGCACCAAG 59.963 42.308 0.88 0.00 0.00 3.61
1500 2052 5.878116 GTCAGTTAACCTATGTATGCACCAA 59.122 40.000 0.88 0.00 0.00 3.67
1523 2075 0.178941 ACCACTCCCGTCCTAACAGT 60.179 55.000 0.00 0.00 0.00 3.55
1547 2099 0.036105 TCACCGAATGCTGCACTGAT 60.036 50.000 3.57 0.00 0.00 2.90
1570 2122 3.146066 ACTAACACGACGGTACCAACTA 58.854 45.455 13.54 0.00 0.00 2.24
1580 2132 2.733026 CCCCACTAAAACTAACACGACG 59.267 50.000 0.00 0.00 0.00 5.12
1586 2138 6.947644 TCTGTTTTCCCCACTAAAACTAAC 57.052 37.500 11.41 0.00 43.82 2.34
1587 2139 6.492087 CCATCTGTTTTCCCCACTAAAACTAA 59.508 38.462 11.41 2.41 43.82 2.24
1589 2141 4.832823 CCATCTGTTTTCCCCACTAAAACT 59.167 41.667 11.41 0.00 43.82 2.66
1590 2142 4.587262 ACCATCTGTTTTCCCCACTAAAAC 59.413 41.667 0.00 0.00 43.77 2.43
1605 2216 3.133003 GCTATGACACCACTACCATCTGT 59.867 47.826 0.00 0.00 0.00 3.41
1606 2217 3.132824 TGCTATGACACCACTACCATCTG 59.867 47.826 0.00 0.00 0.00 2.90
1610 2221 3.326588 ACTTTGCTATGACACCACTACCA 59.673 43.478 0.00 0.00 0.00 3.25
1664 2275 8.770322 TGAATCAATTATGGGTTCATGGAAAAT 58.230 29.630 0.00 0.00 34.96 1.82
1693 2304 3.740115 CACTACAAAGTGCTTGGGTAGT 58.260 45.455 16.89 16.89 46.28 2.73
1757 2391 4.192317 GAGAACAGGACAGTTTGACACTT 58.808 43.478 0.00 0.00 30.92 3.16
1759 2395 3.309954 GTGAGAACAGGACAGTTTGACAC 59.690 47.826 0.00 0.00 0.00 3.67
1764 2400 5.239525 GCTATTTGTGAGAACAGGACAGTTT 59.760 40.000 0.00 0.00 0.00 2.66
1765 2401 4.757149 GCTATTTGTGAGAACAGGACAGTT 59.243 41.667 0.00 0.00 0.00 3.16
1766 2402 4.202357 TGCTATTTGTGAGAACAGGACAGT 60.202 41.667 0.00 0.00 0.00 3.55
1767 2403 4.153117 GTGCTATTTGTGAGAACAGGACAG 59.847 45.833 0.00 0.00 0.00 3.51
1768 2404 4.065088 GTGCTATTTGTGAGAACAGGACA 58.935 43.478 0.00 0.00 0.00 4.02
1769 2405 3.437049 GGTGCTATTTGTGAGAACAGGAC 59.563 47.826 0.00 0.00 0.00 3.85
1770 2406 3.674997 GGTGCTATTTGTGAGAACAGGA 58.325 45.455 0.00 0.00 0.00 3.86
1771 2407 2.416547 CGGTGCTATTTGTGAGAACAGG 59.583 50.000 0.00 0.00 0.00 4.00
1792 2428 3.429822 CCATCTGACAATTGCCCACATTC 60.430 47.826 5.05 0.00 0.00 2.67
1862 2498 5.105106 TGGAACAGGCTAATTCTATTCACGA 60.105 40.000 9.74 0.00 0.00 4.35
1863 2499 5.116180 TGGAACAGGCTAATTCTATTCACG 58.884 41.667 9.74 0.00 0.00 4.35
1911 2547 9.764870 CATGACTTAGACAATGTGTTATCAAAG 57.235 33.333 0.00 0.00 0.00 2.77
1913 2549 7.607607 AGCATGACTTAGACAATGTGTTATCAA 59.392 33.333 0.00 0.00 0.00 2.57
1939 2575 7.890515 TGTTACATTGTGCATTTCCTTAATGA 58.109 30.769 0.00 0.00 45.35 2.57
2001 2637 6.318396 GGAAGGAGTAGATAACAGTTCGTAGT 59.682 42.308 0.00 0.00 0.00 2.73
2095 2731 5.209818 TGTGTTACAAAGTACTCCCTCTG 57.790 43.478 0.00 0.00 0.00 3.35
2099 2735 6.628919 AAACATGTGTTACAAAGTACTCCC 57.371 37.500 0.00 0.00 37.25 4.30
2630 3266 1.142870 CCCAACTGAAGACTTCCACCA 59.857 52.381 12.66 0.00 0.00 4.17
2675 3311 1.088340 CAAGCATCTGGTCAGCCTCG 61.088 60.000 0.00 0.00 35.27 4.63
2848 3484 6.986231 GGAAAAGGAAATGAATGTGAAAGTGT 59.014 34.615 0.00 0.00 0.00 3.55
3024 3780 5.441718 AAAGAAGGAACCATAGAGCATGA 57.558 39.130 0.00 0.00 36.69 3.07
3075 3831 7.033530 TGTGTCAAAATACCAAGTTTAGTGG 57.966 36.000 0.00 0.00 42.28 4.00
3109 3865 7.434307 ACAGAATTAATGTACGGTAGACAATCG 59.566 37.037 0.00 0.00 0.00 3.34
3269 4028 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
3316 4075 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3317 4076 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3318 4077 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3319 4078 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3320 4079 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3321 4080 6.264067 ACCTCCGTAAACTAATATAAGAGCGT 59.736 38.462 0.00 0.00 0.00 5.07
3322 4081 6.675987 ACCTCCGTAAACTAATATAAGAGCG 58.324 40.000 0.00 0.00 0.00 5.03
3323 4082 8.791675 ACTACCTCCGTAAACTAATATAAGAGC 58.208 37.037 0.00 0.00 0.00 4.09
3334 4093 8.398665 CGTAAGTAAATACTACCTCCGTAAACT 58.601 37.037 0.00 0.00 34.99 2.66
3335 4094 7.165977 GCGTAAGTAAATACTACCTCCGTAAAC 59.834 40.741 0.00 0.00 34.99 2.01
3336 4095 7.193595 GCGTAAGTAAATACTACCTCCGTAAA 58.806 38.462 0.00 0.00 34.99 2.01
3337 4096 6.511121 CGCGTAAGTAAATACTACCTCCGTAA 60.511 42.308 0.00 0.00 34.99 3.18
3338 4097 5.050363 CGCGTAAGTAAATACTACCTCCGTA 60.050 44.000 0.00 0.00 34.99 4.02
3339 4098 4.260784 CGCGTAAGTAAATACTACCTCCGT 60.261 45.833 0.00 0.00 34.99 4.69
3340 4099 4.024893 TCGCGTAAGTAAATACTACCTCCG 60.025 45.833 5.77 0.00 34.99 4.63
3341 4100 5.424121 TCGCGTAAGTAAATACTACCTCC 57.576 43.478 5.77 0.00 34.99 4.30
3342 4101 5.911838 CCTTCGCGTAAGTAAATACTACCTC 59.088 44.000 5.77 0.00 34.99 3.85
3343 4102 5.734503 GCCTTCGCGTAAGTAAATACTACCT 60.735 44.000 5.77 0.00 34.99 3.08
3344 4103 4.442403 GCCTTCGCGTAAGTAAATACTACC 59.558 45.833 5.77 0.00 34.99 3.18
3345 4104 5.036737 TGCCTTCGCGTAAGTAAATACTAC 58.963 41.667 5.77 0.00 38.08 2.73
3346 4105 5.247507 TGCCTTCGCGTAAGTAAATACTA 57.752 39.130 5.77 0.00 38.08 1.82
3347 4106 4.110482 CTGCCTTCGCGTAAGTAAATACT 58.890 43.478 5.77 0.00 38.08 2.12
3348 4107 3.302286 GCTGCCTTCGCGTAAGTAAATAC 60.302 47.826 5.77 0.00 38.08 1.89
3349 4108 2.861935 GCTGCCTTCGCGTAAGTAAATA 59.138 45.455 5.77 0.00 38.08 1.40
3350 4109 1.664151 GCTGCCTTCGCGTAAGTAAAT 59.336 47.619 5.77 0.00 38.08 1.40
3354 4113 2.434359 GGCTGCCTTCGCGTAAGT 60.434 61.111 12.43 0.00 38.08 2.24
3368 4127 7.939588 AGAAGAGTACTACAAAATTTTCTGGCT 59.060 33.333 0.00 0.00 0.00 4.75
3405 4164 2.697751 ACACCCACTTTGCATTTAAGCA 59.302 40.909 0.00 0.00 43.99 3.91
3406 4165 3.059166 CACACCCACTTTGCATTTAAGC 58.941 45.455 0.00 0.00 0.00 3.09
3525 4285 2.294233 GCAACAGGAATCTTCAAGTGCA 59.706 45.455 0.00 0.00 0.00 4.57
3595 4355 5.879777 TGGAGCGAACAAATGATTGATTAGA 59.120 36.000 0.00 0.00 38.94 2.10
3603 4363 4.218200 TCAAACATGGAGCGAACAAATGAT 59.782 37.500 0.00 0.00 0.00 2.45
3614 4374 3.065371 CCGACCTAATTCAAACATGGAGC 59.935 47.826 0.00 0.00 0.00 4.70
3625 4385 3.093717 TCTTGATCGCCGACCTAATTC 57.906 47.619 0.00 0.00 0.00 2.17
3715 4475 3.902150 ACATACCGTAATGAGATCGCTG 58.098 45.455 0.00 0.00 0.00 5.18
3781 4542 4.681942 CAGTAAACAACAGACGAGAGGAAG 59.318 45.833 0.00 0.00 0.00 3.46
3790 4551 6.787085 AACATAGAGCAGTAAACAACAGAC 57.213 37.500 0.00 0.00 0.00 3.51
3841 4748 7.209471 ACCGAGACTGCAATTATTGTAAAAA 57.791 32.000 6.81 0.00 0.00 1.94
3854 4761 1.045407 ACTGGTAAACCGAGACTGCA 58.955 50.000 5.85 0.00 39.43 4.41
3878 4785 9.116067 ACTCAAAGCACAAAAGTAGTTGTTATA 57.884 29.630 0.00 0.00 39.73 0.98
3905 4813 0.953960 AAAGGTCAAGCGCCGTTAGG 60.954 55.000 2.29 0.00 41.62 2.69
3913 4821 6.056428 AGTGTACTTTTAAAAGGTCAAGCG 57.944 37.500 27.23 5.62 40.31 4.68
3932 4840 5.140454 AGGTCCAAGCAAATCTTTTAGTGT 58.860 37.500 0.00 0.00 31.27 3.55
3937 4845 5.876651 AAAGAGGTCCAAGCAAATCTTTT 57.123 34.783 0.00 0.00 34.27 2.27
4023 4931 9.683069 AACAAAAGATTTGAGTAATTGCACTAG 57.317 29.630 9.62 0.00 0.00 2.57
4051 4961 2.586425 CCACCCTTTGCATATACCTGG 58.414 52.381 0.00 0.00 0.00 4.45
4189 5099 4.562552 CCTTGGCGGAAACCATTTAATGTT 60.563 41.667 4.15 0.00 40.13 2.71
4326 5241 4.521146 AGTGTTAGAGGCTGGATGATTTG 58.479 43.478 0.00 0.00 0.00 2.32
4389 5304 9.836076 CATCAAACATAGTATATGCTGGAAATG 57.164 33.333 3.24 2.02 0.00 2.32
4466 5381 7.501892 TGCAGTATATATCTTGGAATTTGCACA 59.498 33.333 0.00 0.00 32.42 4.57
4516 5431 6.321181 AGACTGAATGTTTAGGTGCAGAAAAA 59.679 34.615 0.00 0.00 0.00 1.94
4517 5432 5.827797 AGACTGAATGTTTAGGTGCAGAAAA 59.172 36.000 0.00 0.00 0.00 2.29
4518 5433 5.376625 AGACTGAATGTTTAGGTGCAGAAA 58.623 37.500 0.00 0.00 0.00 2.52
4519 5434 4.973168 AGACTGAATGTTTAGGTGCAGAA 58.027 39.130 0.00 0.00 0.00 3.02
4520 5435 4.623932 AGACTGAATGTTTAGGTGCAGA 57.376 40.909 0.00 0.00 0.00 4.26
4521 5436 5.120830 GTGTAGACTGAATGTTTAGGTGCAG 59.879 44.000 0.00 0.00 0.00 4.41
4522 5437 4.994852 GTGTAGACTGAATGTTTAGGTGCA 59.005 41.667 0.00 0.00 0.00 4.57
4523 5438 4.994852 TGTGTAGACTGAATGTTTAGGTGC 59.005 41.667 0.00 0.00 0.00 5.01
4524 5439 5.989168 TGTGTGTAGACTGAATGTTTAGGTG 59.011 40.000 0.00 0.00 0.00 4.00
4525 5440 6.169557 TGTGTGTAGACTGAATGTTTAGGT 57.830 37.500 0.00 0.00 0.00 3.08
4526 5441 6.873605 TCATGTGTGTAGACTGAATGTTTAGG 59.126 38.462 0.00 0.00 0.00 2.69
4527 5442 7.889589 TCATGTGTGTAGACTGAATGTTTAG 57.110 36.000 0.00 0.00 0.00 1.85
4529 5444 9.453572 AATATCATGTGTGTAGACTGAATGTTT 57.546 29.630 0.00 0.00 0.00 2.83
4541 5456 9.791801 AGCACCATAAATAATATCATGTGTGTA 57.208 29.630 0.00 0.00 0.00 2.90
4675 5590 7.126398 GTGATAAAACGCATGAAAGGTAGATC 58.874 38.462 0.00 0.00 0.00 2.75
4678 5593 6.176975 TGTGATAAAACGCATGAAAGGTAG 57.823 37.500 0.00 0.00 0.00 3.18
4681 5596 5.883661 AGATGTGATAAAACGCATGAAAGG 58.116 37.500 0.00 0.00 40.40 3.11
4720 5635 3.119884 CCACGTGAATTGCAAGATTAGCA 60.120 43.478 19.30 0.00 40.85 3.49
4722 5637 4.685169 ACCACGTGAATTGCAAGATTAG 57.315 40.909 19.30 0.00 0.00 1.73
4797 5796 5.579753 ATCTGCCATAATCCACTTGAGAT 57.420 39.130 0.00 0.00 0.00 2.75
4804 5803 8.671921 CATTAATCTGTATCTGCCATAATCCAC 58.328 37.037 0.00 0.00 0.00 4.02
4833 5832 7.936950 TCTGCATTAACAGAAATATCTCTCG 57.063 36.000 0.00 0.00 43.59 4.04
4988 5987 0.795698 TGCATCCAACATCACGTTCG 59.204 50.000 0.00 0.00 34.86 3.95
5015 6014 3.132111 CCATTGTAGGTGGGCCAATAAAC 59.868 47.826 8.40 5.13 37.19 2.01
5213 6212 1.419012 TGCTCATGGCTAATCAGGGAG 59.581 52.381 7.54 0.00 42.39 4.30
5249 6248 6.047511 ACCATGCATATGAGTAATCTCCTC 57.952 41.667 6.97 0.00 39.75 3.71
5306 6305 8.962679 ACAGGTAAAATGTTTTCTTAACTGTGA 58.037 29.630 10.17 0.00 46.65 3.58
5356 6359 6.637254 GGCACTTCTAAGTTTTAAGCAAGAAC 59.363 38.462 0.00 0.00 37.08 3.01
5445 6448 8.522542 AGACAATTCGGATACTAGTAGAACTT 57.477 34.615 8.85 0.00 0.00 2.66
5512 6516 5.821204 TGCTTAAGAGAAAACTGCAAGAAC 58.179 37.500 6.67 0.00 37.43 3.01
5571 6575 0.741221 GTCACCGATCCCTGCAGTTC 60.741 60.000 13.81 5.76 0.00 3.01
5612 6616 3.294038 AAGAAGCCTCTTGCATATGCT 57.706 42.857 27.13 5.37 44.83 3.79
5806 6822 9.212641 CCTCATAATGATGGTTCAGTTACTATG 57.787 37.037 0.00 0.00 34.73 2.23
5872 6888 5.275067 ACAGTTGGCAATGTGTACAAAAT 57.725 34.783 14.47 0.00 0.00 1.82
5914 6930 4.201920 GCAATCTCCTCGGGTAAATCAAAC 60.202 45.833 0.00 0.00 0.00 2.93
6119 7135 5.278169 CCAGCATCACATATAAACAAGAGCC 60.278 44.000 0.00 0.00 0.00 4.70
6218 7235 4.991760 CCGTAAGAGTCGGTAGCG 57.008 61.111 8.29 8.29 42.62 4.26
6452 7469 1.379443 ACCATAGGACGAGCGACCA 60.379 57.895 13.29 1.04 32.53 4.02
6455 7472 2.125326 CCCACCATAGGACGAGCGA 61.125 63.158 0.00 0.00 0.00 4.93
6494 7511 1.115467 AGGACGATGATCTGTCACCC 58.885 55.000 15.44 6.84 37.14 4.61
6536 7553 3.936203 GAGCCACCACGACCACCA 61.936 66.667 0.00 0.00 0.00 4.17
6614 7631 0.890542 AGCGTGCATCCAAAGAGCAA 60.891 50.000 0.00 0.00 40.35 3.91
6686 7705 9.750125 AAAAGAACATCATAGGTGAAAAAGAAC 57.250 29.630 0.00 0.00 38.01 3.01
6694 7713 9.739276 ATTTAGTGAAAAGAACATCATAGGTGA 57.261 29.630 0.00 0.00 39.04 4.02
6719 7738 4.184629 GAGGTGTTCAAACTCGCATCTAT 58.815 43.478 0.00 0.00 0.00 1.98
6791 7818 6.153340 ACACGAGGTAAAGCATTAGGTTACTA 59.847 38.462 0.00 0.00 34.49 1.82
6813 7840 9.760660 CTAGCAAACTTATTATCAGTTTCACAC 57.239 33.333 1.94 0.00 41.58 3.82
6897 7956 0.690762 GTGGGGGAGTGTTAGCTCAA 59.309 55.000 0.00 0.00 37.24 3.02
6947 8035 2.596923 TGCCCGCATGTGAAGCAA 60.597 55.556 18.01 5.70 0.00 3.91
6965 8053 0.743701 CTGATGCTCTGTGCCCTGAC 60.744 60.000 0.00 0.00 42.00 3.51
7062 8379 2.743928 CTGTCCAGCCGCTTGTCC 60.744 66.667 0.00 0.00 0.00 4.02
7091 8410 4.467084 GCCGGCGATGTCCTTGGA 62.467 66.667 12.58 0.00 0.00 3.53
7111 8430 0.314302 GGCATACGCGTAGATCAGGT 59.686 55.000 24.78 2.48 39.92 4.00
7115 8434 1.137513 GTTGGGCATACGCGTAGATC 58.862 55.000 24.78 14.68 39.92 2.75
7116 8435 0.596600 CGTTGGGCATACGCGTAGAT 60.597 55.000 24.78 6.93 39.92 1.98
7157 8494 3.119173 CCATGACCACACAAAACTGTTGT 60.119 43.478 0.00 0.00 0.00 3.32
7158 8495 3.119173 ACCATGACCACACAAAACTGTTG 60.119 43.478 0.00 0.00 0.00 3.33
7159 8496 3.096092 ACCATGACCACACAAAACTGTT 58.904 40.909 0.00 0.00 0.00 3.16
7299 8637 1.208259 GACAAGCGGCAAACCAAAAG 58.792 50.000 1.45 0.00 34.57 2.27
7420 8764 2.167161 CCGCATTTCACGGCAGTAA 58.833 52.632 0.00 0.00 44.90 2.24
7421 8765 3.883462 CCGCATTTCACGGCAGTA 58.117 55.556 0.00 0.00 44.90 2.74
7427 8771 1.358877 TGACATCTCCGCATTTCACG 58.641 50.000 0.00 0.00 0.00 4.35
7450 8794 5.049405 CGTATCAACCAAAAGCTTCAGAGTT 60.049 40.000 0.00 0.00 0.00 3.01
7452 8796 4.452455 ACGTATCAACCAAAAGCTTCAGAG 59.548 41.667 0.00 0.00 0.00 3.35
7488 8832 0.390124 AACCGACGCAAACCTGTCTA 59.610 50.000 0.00 0.00 32.93 2.59
7537 8885 7.674120 TCTTCTCATCTCACAGAGATCAAAAA 58.326 34.615 6.55 0.30 45.03 1.94
7555 8903 5.752036 AACTGGTTCATCTCATCTTCTCA 57.248 39.130 0.00 0.00 0.00 3.27
7652 9019 1.202879 TCACTGACCAACCATCAACCC 60.203 52.381 0.00 0.00 0.00 4.11
7659 9026 1.640593 TTGGCCTCACTGACCAACCA 61.641 55.000 3.32 0.00 38.52 3.67
7683 9050 6.779860 AGTTTTTCCATCTGCTAAGGTCTAA 58.220 36.000 0.00 0.00 0.00 2.10
7694 9061 4.168760 GGAATCGCAAGTTTTTCCATCTG 58.831 43.478 0.00 0.00 39.77 2.90
7695 9062 3.826157 TGGAATCGCAAGTTTTTCCATCT 59.174 39.130 0.00 0.00 42.48 2.90
7703 9070 5.175127 ACAAGTTTTTGGAATCGCAAGTTT 58.825 33.333 0.00 0.00 38.66 2.66
7705 9072 4.385358 ACAAGTTTTTGGAATCGCAAGT 57.615 36.364 0.00 0.00 38.66 3.16
7706 9073 5.717038 AAACAAGTTTTTGGAATCGCAAG 57.283 34.783 0.00 0.00 38.66 4.01
7709 9076 4.266739 ACGAAAACAAGTTTTTGGAATCGC 59.733 37.500 22.76 5.44 44.34 4.58
7710 9077 5.942325 ACGAAAACAAGTTTTTGGAATCG 57.058 34.783 22.76 17.14 44.34 3.34
7711 9078 7.897800 CAGAAACGAAAACAAGTTTTTGGAATC 59.102 33.333 22.76 17.80 44.34 2.52
7716 9083 6.008875 CAGCAGAAACGAAAACAAGTTTTTG 58.991 36.000 19.19 19.19 45.12 2.44
7719 9086 5.054390 TCAGCAGAAACGAAAACAAGTTT 57.946 34.783 0.00 0.00 42.50 2.66
7721 9088 4.601019 CATCAGCAGAAACGAAAACAAGT 58.399 39.130 0.00 0.00 0.00 3.16
7722 9089 3.423206 GCATCAGCAGAAACGAAAACAAG 59.577 43.478 0.00 0.00 41.58 3.16
7723 9090 3.371168 GCATCAGCAGAAACGAAAACAA 58.629 40.909 0.00 0.00 41.58 2.83
7724 9091 2.601979 CGCATCAGCAGAAACGAAAACA 60.602 45.455 0.00 0.00 42.27 2.83
7725 9092 1.971962 CGCATCAGCAGAAACGAAAAC 59.028 47.619 0.00 0.00 42.27 2.43
7726 9093 1.662876 GCGCATCAGCAGAAACGAAAA 60.663 47.619 0.30 0.00 42.27 2.29
7727 9094 0.110238 GCGCATCAGCAGAAACGAAA 60.110 50.000 0.30 0.00 42.27 3.46
7730 9097 1.225936 CAGCGCATCAGCAGAAACG 60.226 57.895 11.47 0.61 42.27 3.60
7732 9099 1.239296 AAGCAGCGCATCAGCAGAAA 61.239 50.000 11.47 0.00 42.27 2.52
7736 9103 2.455291 CGTAAGCAGCGCATCAGCA 61.455 57.895 11.47 0.00 42.27 4.41
7745 9112 0.740868 TGCACATCTCCGTAAGCAGC 60.741 55.000 0.00 0.00 0.00 5.25
7759 9126 1.724082 CATCGACAACACGTATGCACA 59.276 47.619 0.00 0.00 34.70 4.57
7763 9130 4.422997 GATCACATCGACAACACGTATG 57.577 45.455 0.00 0.00 34.70 2.39
7784 9163 3.103911 GCGACCGTGTCCAACTCG 61.104 66.667 0.00 0.00 35.17 4.18
7813 9192 3.621892 CTCCCGTCGACACCGTTCC 62.622 68.421 17.16 0.00 37.05 3.62
7815 9194 2.908940 ACTCCCGTCGACACCGTT 60.909 61.111 17.16 0.00 37.05 4.44
7817 9196 4.415332 CCACTCCCGTCGACACCG 62.415 72.222 17.16 1.07 37.07 4.94
7818 9197 4.065281 CCCACTCCCGTCGACACC 62.065 72.222 17.16 0.00 0.00 4.16
7830 9237 3.434179 TTGCCAACCACCCCCACT 61.434 61.111 0.00 0.00 0.00 4.00
7831 9238 3.230990 GTTGCCAACCACCCCCAC 61.231 66.667 0.00 0.00 0.00 4.61
7835 9242 0.887933 CATACTGTTGCCAACCACCC 59.112 55.000 4.90 0.00 0.00 4.61
7836 9243 0.887933 CCATACTGTTGCCAACCACC 59.112 55.000 4.90 0.00 0.00 4.61
7849 9256 1.407979 CGTTCGCTACCTTCCCATACT 59.592 52.381 0.00 0.00 0.00 2.12
7854 9261 1.515736 CGTCGTTCGCTACCTTCCC 60.516 63.158 0.00 0.00 0.00 3.97
7855 9262 4.068302 CGTCGTTCGCTACCTTCC 57.932 61.111 0.00 0.00 0.00 3.46
7879 9286 3.435601 GCCCCTCTGATGTCATATGGTTT 60.436 47.826 2.13 0.00 0.00 3.27
7920 9327 1.068474 CGAGTGACGTGACCCATTTC 58.932 55.000 0.09 0.00 37.22 2.17
7924 9331 2.520020 ACCGAGTGACGTGACCCA 60.520 61.111 0.09 0.00 40.78 4.51
7927 9335 1.081376 CCTGACCGAGTGACGTGAC 60.081 63.158 0.00 0.00 40.78 3.67
7931 9339 1.372997 CCAACCTGACCGAGTGACG 60.373 63.158 0.00 0.00 42.18 4.35
7938 9346 0.035439 ATTAGCACCCAACCTGACCG 60.035 55.000 0.00 0.00 0.00 4.79
7939 9347 1.682087 GGATTAGCACCCAACCTGACC 60.682 57.143 0.00 0.00 0.00 4.02
7948 9356 2.957402 TCATGATGGGATTAGCACCC 57.043 50.000 0.00 0.00 46.87 4.61
7975 9383 3.834231 CCCATTCCCATGAGAAAAACAGT 59.166 43.478 0.00 0.00 31.07 3.55
7976 9384 4.088634 TCCCATTCCCATGAGAAAAACAG 58.911 43.478 0.00 0.00 31.07 3.16
7978 9386 5.422145 CATTCCCATTCCCATGAGAAAAAC 58.578 41.667 0.00 0.00 31.46 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.