Multiple sequence alignment - TraesCS4A01G366900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G366900 chr4A 100.000 3416 0 0 1 3416 640055919 640059334 0.000000e+00 6309
1 TraesCS4A01G366900 chr4A 74.224 1160 250 31 335 1476 637247535 637246407 1.130000e-119 440
2 TraesCS4A01G366900 chr4A 80.300 467 63 20 1834 2297 640102180 640102620 3.290000e-85 326
3 TraesCS4A01G366900 chr4A 74.307 685 148 15 806 1476 637234745 637234075 7.270000e-67 265
4 TraesCS4A01G366900 chr4A 71.205 1278 289 58 377 1627 640002559 640003784 7.320000e-62 248
5 TraesCS4A01G366900 chr4A 75.301 332 78 4 1147 1476 640000346 640000017 4.560000e-34 156
6 TraesCS4A01G366900 chr4A 76.496 234 44 7 1412 1640 624139343 624139570 2.150000e-22 117
7 TraesCS4A01G366900 chr5B 95.132 2876 100 13 9 2875 671341705 671338861 0.000000e+00 4499
8 TraesCS4A01G366900 chr5B 76.658 1975 315 81 388 2297 671303036 671301143 0.000000e+00 959
9 TraesCS4A01G366900 chr5B 77.258 1517 276 35 329 1801 671266450 671264959 0.000000e+00 826
10 TraesCS4A01G366900 chr5B 71.819 1281 295 47 378 1635 672474640 672473403 4.280000e-79 305
11 TraesCS4A01G366900 chr5B 71.741 1281 292 47 378 1635 672441608 672440375 2.580000e-76 296
12 TraesCS4A01G366900 chr5B 93.913 115 6 1 3186 3300 473290854 473290741 4.530000e-39 172
13 TraesCS4A01G366900 chr5D 76.915 1984 301 88 388 2297 532248774 532246874 0.000000e+00 981
14 TraesCS4A01G366900 chr5D 75.681 514 95 22 377 886 532284544 532284057 2.650000e-56 230
15 TraesCS4A01G366900 chr5D 77.143 175 40 0 925 1099 58247939 58248113 6.030000e-18 102
16 TraesCS4A01G366900 chr6D 87.859 313 36 2 2875 3187 454409090 454409400 1.940000e-97 366
17 TraesCS4A01G366900 chr1D 93.846 195 11 1 2993 3187 204802719 204802912 3.330000e-75 292
18 TraesCS4A01G366900 chr1D 90.678 118 7 2 3296 3413 204802916 204803029 1.640000e-33 154
19 TraesCS4A01G366900 chr1D 96.875 64 1 1 2943 3005 204802103 204802166 4.660000e-19 106
20 TraesCS4A01G366900 chr5A 84.122 296 46 1 2874 3169 599262762 599263056 5.580000e-73 285
21 TraesCS4A01G366900 chr3B 94.444 180 10 0 2364 2543 740527248 740527427 9.340000e-71 278
22 TraesCS4A01G366900 chr3B 91.667 180 15 0 2364 2543 103551243 103551422 2.040000e-62 250
23 TraesCS4A01G366900 chr7B 93.889 180 11 0 2364 2543 27321377 27321198 4.340000e-69 272
24 TraesCS4A01G366900 chr7B 93.889 180 11 0 2364 2543 572533063 572533242 4.340000e-69 272
25 TraesCS4A01G366900 chr7B 96.330 109 4 0 3193 3301 40663073 40662965 2.710000e-41 180
26 TraesCS4A01G366900 chr7B 91.406 128 9 2 3171 3296 523681954 523682081 1.260000e-39 174
27 TraesCS4A01G366900 chr1B 93.333 180 12 0 2364 2543 36945887 36946066 2.020000e-67 267
28 TraesCS4A01G366900 chr1B 93.333 180 12 0 2364 2543 565902411 565902232 2.020000e-67 267
29 TraesCS4A01G366900 chr6A 82.333 300 50 3 2871 3169 53884671 53884374 1.220000e-64 257
30 TraesCS4A01G366900 chr6A 93.966 116 6 1 3183 3297 300270498 300270613 1.260000e-39 174
31 TraesCS4A01G366900 chr7D 71.353 1138 235 58 379 1495 636820699 636819632 9.600000e-51 211
32 TraesCS4A01G366900 chr7D 94.690 113 6 0 3187 3299 227507230 227507118 3.500000e-40 176
33 TraesCS4A01G366900 chr7D 91.803 122 9 1 3188 3309 280404931 280404811 5.860000e-38 169
34 TraesCS4A01G366900 chr7D 90.551 127 10 2 3190 3314 174803149 174803275 2.110000e-37 167
35 TraesCS4A01G366900 chr2A 94.017 117 6 1 3182 3297 762743758 762743642 3.500000e-40 176
36 TraesCS4A01G366900 chr7A 93.913 115 6 1 3186 3300 645026055 645026168 4.530000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G366900 chr4A 640055919 640059334 3415 False 6309 6309 100.000 1 3416 1 chr4A.!!$F3 3415
1 TraesCS4A01G366900 chr4A 637246407 637247535 1128 True 440 440 74.224 335 1476 1 chr4A.!!$R2 1141
2 TraesCS4A01G366900 chr4A 637234075 637234745 670 True 265 265 74.307 806 1476 1 chr4A.!!$R1 670
3 TraesCS4A01G366900 chr4A 640002559 640003784 1225 False 248 248 71.205 377 1627 1 chr4A.!!$F2 1250
4 TraesCS4A01G366900 chr5B 671338861 671341705 2844 True 4499 4499 95.132 9 2875 1 chr5B.!!$R4 2866
5 TraesCS4A01G366900 chr5B 671301143 671303036 1893 True 959 959 76.658 388 2297 1 chr5B.!!$R3 1909
6 TraesCS4A01G366900 chr5B 671264959 671266450 1491 True 826 826 77.258 329 1801 1 chr5B.!!$R2 1472
7 TraesCS4A01G366900 chr5B 672473403 672474640 1237 True 305 305 71.819 378 1635 1 chr5B.!!$R6 1257
8 TraesCS4A01G366900 chr5B 672440375 672441608 1233 True 296 296 71.741 378 1635 1 chr5B.!!$R5 1257
9 TraesCS4A01G366900 chr5D 532246874 532248774 1900 True 981 981 76.915 388 2297 1 chr5D.!!$R1 1909
10 TraesCS4A01G366900 chr7D 636819632 636820699 1067 True 211 211 71.353 379 1495 1 chr7D.!!$R3 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 425 0.469144 AGAGATCCTCCTCCGGCTTC 60.469 60.000 0.00 0.0 33.76 3.86 F
1295 1339 1.750778 CGGCAGTTTGCTCCCAATTAT 59.249 47.619 0.67 0.0 44.28 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 1452 0.033504 TCGCACACCTTTCTCACCTC 59.966 55.0 0.0 0.0 0.0 3.85 R
3281 3417 0.030908 GCATCTACTCCCTCCGTTCG 59.969 60.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.913674 AGGTTTACAAAATGAGAGATCAGTC 57.086 36.000 0.00 0.00 0.00 3.51
52 53 5.744819 CAGTCGGTTGGAAATAAACGTTTTT 59.255 36.000 20.19 8.68 41.30 1.94
178 179 4.099881 ACAAGTGTCTTTTCATGTGCCAAT 59.900 37.500 0.00 0.00 0.00 3.16
188 189 5.906113 TTCATGTGCCAATTAATACCGTT 57.094 34.783 0.00 0.00 0.00 4.44
227 228 3.439129 GGTAGTGTTGGGAAGGAAATTCG 59.561 47.826 0.00 0.00 38.95 3.34
233 234 1.092348 GGGAAGGAAATTCGGAACCG 58.908 55.000 6.94 6.94 38.95 4.44
417 425 0.469144 AGAGATCCTCCTCCGGCTTC 60.469 60.000 0.00 0.00 33.76 3.86
487 495 4.265056 GGGGTTGCACCGTCACCT 62.265 66.667 4.57 0.00 39.83 4.00
752 766 3.876198 CCAACAGCGCATACCGGC 61.876 66.667 11.47 0.00 37.44 6.13
903 917 3.441163 TGTCAACAACGTAGACACTGAC 58.559 45.455 8.41 7.31 37.36 3.51
1295 1339 1.750778 CGGCAGTTTGCTCCCAATTAT 59.249 47.619 0.67 0.00 44.28 1.28
1441 1494 1.672363 TGTGCGATGATCATGGCTTTC 59.328 47.619 33.53 24.98 42.10 2.62
1917 2043 4.926860 TGTTCTGTTGTGATTAGCATCG 57.073 40.909 0.00 0.00 31.08 3.84
1948 2074 4.575885 TCAAAGTTCAGGTACCATGCTAC 58.424 43.478 15.94 10.42 0.00 3.58
1957 2083 4.645136 CAGGTACCATGCTACTCTACTTGA 59.355 45.833 15.94 0.00 0.00 3.02
2045 2176 8.480066 CGTATAGTACTTCATAATGTGTGCAAG 58.520 37.037 0.00 0.00 0.00 4.01
2144 2275 8.736751 ATTATTTTAGTTGTGCTTTTGTACCG 57.263 30.769 0.00 0.00 33.97 4.02
2177 2308 7.172703 ACAGTAACTTTCTGCCTTGTGTTATAC 59.827 37.037 0.00 0.00 36.50 1.47
2257 2392 1.878953 AGTTGCTCCAAAGTGTACCG 58.121 50.000 0.00 0.00 0.00 4.02
2322 2457 1.201429 AGGCGTCTGATCCTTTGGGT 61.201 55.000 0.00 0.00 0.00 4.51
2340 2475 1.021390 GTGATGTCCCCAAGAGTGCG 61.021 60.000 0.00 0.00 0.00 5.34
2352 2487 0.459237 AGAGTGCGCGGAATGAAGAG 60.459 55.000 4.62 0.00 0.00 2.85
2373 2508 2.355132 GTCCGCGAAGAGTTCAGATAGA 59.645 50.000 8.23 0.00 0.00 1.98
2377 2512 3.978217 CGCGAAGAGTTCAGATAGAATCC 59.022 47.826 0.00 0.00 38.76 3.01
2388 2523 6.566079 TCAGATAGAATCCACAAAGATGGT 57.434 37.500 0.00 0.00 40.95 3.55
2398 2533 1.145738 ACAAAGATGGTGCTGGGAACT 59.854 47.619 0.00 0.00 0.00 3.01
2401 2536 0.617413 AGATGGTGCTGGGAACTCAG 59.383 55.000 0.00 0.00 37.79 3.35
2435 2570 1.672363 GCAATGTCGATGATGCTCCAA 59.328 47.619 10.78 0.00 35.93 3.53
2440 2575 3.608796 TGTCGATGATGCTCCAATTTCA 58.391 40.909 0.00 0.00 0.00 2.69
2484 2619 3.181513 TGTGTTCTACATACTCGCGACTC 60.182 47.826 3.71 0.00 33.42 3.36
2485 2620 3.004862 TGTTCTACATACTCGCGACTCA 58.995 45.455 3.71 0.00 0.00 3.41
2486 2621 3.063588 TGTTCTACATACTCGCGACTCAG 59.936 47.826 3.71 0.00 0.00 3.35
2487 2622 2.210961 TCTACATACTCGCGACTCAGG 58.789 52.381 3.71 0.00 0.00 3.86
2488 2623 1.264557 CTACATACTCGCGACTCAGGG 59.735 57.143 3.71 0.00 0.00 4.45
2489 2624 1.299468 CATACTCGCGACTCAGGGC 60.299 63.158 3.71 0.00 0.00 5.19
2490 2625 1.454111 ATACTCGCGACTCAGGGCT 60.454 57.895 3.71 0.00 0.00 5.19
2491 2626 1.729470 ATACTCGCGACTCAGGGCTG 61.729 60.000 3.71 0.00 0.00 4.85
2492 2627 3.753434 CTCGCGACTCAGGGCTGT 61.753 66.667 3.71 0.00 0.00 4.40
2493 2628 2.360726 TCGCGACTCAGGGCTGTA 60.361 61.111 3.71 0.00 0.00 2.74
2494 2629 2.103143 CGCGACTCAGGGCTGTAG 59.897 66.667 0.00 0.00 0.00 2.74
2495 2630 2.701780 CGCGACTCAGGGCTGTAGT 61.702 63.158 0.00 0.00 0.00 2.73
2496 2631 1.153745 GCGACTCAGGGCTGTAGTG 60.154 63.158 0.00 0.00 0.00 2.74
2497 2632 1.513158 CGACTCAGGGCTGTAGTGG 59.487 63.158 0.00 0.00 0.00 4.00
2498 2633 1.219393 GACTCAGGGCTGTAGTGGC 59.781 63.158 0.00 0.00 0.00 5.01
2499 2634 2.185350 CTCAGGGCTGTAGTGGCG 59.815 66.667 0.00 0.00 0.00 5.69
2500 2635 2.283604 TCAGGGCTGTAGTGGCGA 60.284 61.111 0.00 0.00 0.00 5.54
2501 2636 1.680522 CTCAGGGCTGTAGTGGCGAT 61.681 60.000 0.00 0.00 0.00 4.58
2502 2637 1.522355 CAGGGCTGTAGTGGCGATG 60.522 63.158 0.00 0.00 0.00 3.84
2503 2638 2.897350 GGGCTGTAGTGGCGATGC 60.897 66.667 0.00 0.00 0.00 3.91
2535 2670 4.923871 CAGTACTGTGCGTTGAAATACTCT 59.076 41.667 15.06 0.00 0.00 3.24
2536 2671 5.405571 CAGTACTGTGCGTTGAAATACTCTT 59.594 40.000 15.06 0.00 0.00 2.85
2545 2680 6.140110 GCGTTGAAATACTCTTAAGTTTGCA 58.860 36.000 1.63 0.00 36.92 4.08
2564 2699 9.745018 AGTTTGCATTATTATCTAGGCATATGT 57.255 29.630 4.29 0.00 0.00 2.29
2591 2726 6.494893 TGGAATAATTTCTCAAACCAGTCG 57.505 37.500 0.00 0.00 32.16 4.18
2655 2791 2.173782 TGGGACTTGGAACAGTTTGCTA 59.826 45.455 0.00 0.00 42.39 3.49
2672 2808 9.710900 CAGTTTGCTATGTGGACATATATCTTA 57.289 33.333 0.00 0.00 38.09 2.10
2700 2836 6.997239 ATCACCATCATTCATTCGATATGG 57.003 37.500 0.00 0.00 39.80 2.74
2761 2897 4.228912 ACTGTGCATTGTTCAGCTTTAC 57.771 40.909 1.42 0.00 33.12 2.01
2762 2898 3.631686 ACTGTGCATTGTTCAGCTTTACA 59.368 39.130 1.42 0.00 33.12 2.41
2774 2910 5.128992 TCAGCTTTACAACACAGATCGTA 57.871 39.130 0.00 0.00 0.00 3.43
2789 2925 4.567959 CAGATCGTAGATGATGTTGCACAA 59.432 41.667 0.00 0.00 45.12 3.33
2817 2953 2.546584 GGGAACTTTTGCTTGCTCCAAG 60.547 50.000 0.74 0.74 43.57 3.61
2844 2980 3.248495 TGTTTGTGAACGTGTACCTGA 57.752 42.857 0.00 0.00 38.65 3.86
2854 2990 1.675714 CGTGTACCTGATGCCATGTGT 60.676 52.381 0.00 0.00 0.00 3.72
2900 3036 4.803098 TTGAGGACTAGAGTAAACAGGC 57.197 45.455 0.00 0.00 0.00 4.85
2901 3037 4.048970 TGAGGACTAGAGTAAACAGGCT 57.951 45.455 0.00 0.00 0.00 4.58
2902 3038 4.417437 TGAGGACTAGAGTAAACAGGCTT 58.583 43.478 0.00 0.00 0.00 4.35
2903 3039 5.577100 TGAGGACTAGAGTAAACAGGCTTA 58.423 41.667 0.00 0.00 0.00 3.09
2904 3040 5.418209 TGAGGACTAGAGTAAACAGGCTTAC 59.582 44.000 0.00 0.00 32.84 2.34
2905 3041 5.581975 AGGACTAGAGTAAACAGGCTTACT 58.418 41.667 0.00 0.00 43.31 2.24
2910 3046 4.538746 GAGTAAACAGGCTTACTCCAGT 57.461 45.455 12.01 0.00 46.49 4.00
2911 3047 4.246458 GAGTAAACAGGCTTACTCCAGTG 58.754 47.826 12.01 0.00 46.49 3.66
2912 3048 2.568623 AAACAGGCTTACTCCAGTGG 57.431 50.000 1.40 1.40 0.00 4.00
2913 3049 0.693049 AACAGGCTTACTCCAGTGGG 59.307 55.000 9.92 2.47 0.00 4.61
2914 3050 1.201429 ACAGGCTTACTCCAGTGGGG 61.201 60.000 7.77 7.77 38.37 4.96
2915 3051 1.616628 AGGCTTACTCCAGTGGGGG 60.617 63.158 15.21 7.74 42.10 5.40
2916 3052 2.272471 GCTTACTCCAGTGGGGGC 59.728 66.667 15.21 3.12 38.74 5.80
2917 3053 2.301738 GCTTACTCCAGTGGGGGCT 61.302 63.158 15.21 0.00 38.74 5.19
2918 3054 1.853250 GCTTACTCCAGTGGGGGCTT 61.853 60.000 15.21 0.00 38.74 4.35
2919 3055 1.580059 CTTACTCCAGTGGGGGCTTA 58.420 55.000 15.21 0.00 38.74 3.09
2920 3056 1.209747 CTTACTCCAGTGGGGGCTTAC 59.790 57.143 15.21 0.00 38.74 2.34
2921 3057 0.117541 TACTCCAGTGGGGGCTTACA 59.882 55.000 15.21 0.00 38.74 2.41
2922 3058 0.550147 ACTCCAGTGGGGGCTTACAT 60.550 55.000 15.21 0.00 38.74 2.29
2923 3059 0.625849 CTCCAGTGGGGGCTTACATT 59.374 55.000 9.92 0.00 37.22 2.71
2924 3060 0.623723 TCCAGTGGGGGCTTACATTC 59.376 55.000 9.92 0.00 37.22 2.67
2925 3061 0.331278 CCAGTGGGGGCTTACATTCA 59.669 55.000 0.00 0.00 0.00 2.57
2926 3062 1.683011 CCAGTGGGGGCTTACATTCAG 60.683 57.143 0.00 0.00 0.00 3.02
2927 3063 1.281867 CAGTGGGGGCTTACATTCAGA 59.718 52.381 0.00 0.00 0.00 3.27
2928 3064 1.561542 AGTGGGGGCTTACATTCAGAG 59.438 52.381 0.00 0.00 0.00 3.35
2929 3065 1.559682 GTGGGGGCTTACATTCAGAGA 59.440 52.381 0.00 0.00 0.00 3.10
2930 3066 1.839994 TGGGGGCTTACATTCAGAGAG 59.160 52.381 0.00 0.00 0.00 3.20
2931 3067 1.475930 GGGGGCTTACATTCAGAGAGC 60.476 57.143 0.00 0.00 0.00 4.09
2932 3068 1.210478 GGGGCTTACATTCAGAGAGCA 59.790 52.381 0.00 0.00 35.12 4.26
2933 3069 2.158696 GGGGCTTACATTCAGAGAGCAT 60.159 50.000 0.00 0.00 35.12 3.79
2934 3070 3.549794 GGGCTTACATTCAGAGAGCATT 58.450 45.455 0.00 0.00 35.12 3.56
2935 3071 4.444876 GGGGCTTACATTCAGAGAGCATTA 60.445 45.833 0.00 0.00 35.12 1.90
2936 3072 4.754114 GGGCTTACATTCAGAGAGCATTAG 59.246 45.833 0.00 0.00 35.12 1.73
2937 3073 4.754114 GGCTTACATTCAGAGAGCATTAGG 59.246 45.833 0.00 0.00 35.12 2.69
2938 3074 4.213059 GCTTACATTCAGAGAGCATTAGGC 59.787 45.833 0.00 0.00 45.30 3.93
2949 3085 2.729028 GCATTAGGCTCCTTAACCCA 57.271 50.000 0.00 0.00 40.25 4.51
2950 3086 3.229697 GCATTAGGCTCCTTAACCCAT 57.770 47.619 0.00 0.00 40.25 4.00
2951 3087 3.149981 GCATTAGGCTCCTTAACCCATC 58.850 50.000 0.00 0.00 40.25 3.51
2952 3088 3.403038 CATTAGGCTCCTTAACCCATCG 58.597 50.000 0.00 0.00 0.00 3.84
2953 3089 1.420430 TAGGCTCCTTAACCCATCGG 58.580 55.000 0.00 0.00 0.00 4.18
2964 3100 3.183130 CCCATCGGGTACATTTGCA 57.817 52.632 0.00 0.00 38.25 4.08
2965 3101 1.468985 CCCATCGGGTACATTTGCAA 58.531 50.000 0.00 0.00 38.25 4.08
2966 3102 2.031120 CCCATCGGGTACATTTGCAAT 58.969 47.619 0.00 0.00 38.25 3.56
2967 3103 2.034558 CCCATCGGGTACATTTGCAATC 59.965 50.000 0.00 0.00 38.25 2.67
2968 3104 2.687425 CCATCGGGTACATTTGCAATCA 59.313 45.455 0.00 0.00 0.00 2.57
2969 3105 3.243168 CCATCGGGTACATTTGCAATCAG 60.243 47.826 0.00 0.00 0.00 2.90
2970 3106 2.364632 TCGGGTACATTTGCAATCAGG 58.635 47.619 0.00 0.00 0.00 3.86
2971 3107 2.026729 TCGGGTACATTTGCAATCAGGA 60.027 45.455 0.00 0.00 0.00 3.86
2972 3108 2.752354 CGGGTACATTTGCAATCAGGAA 59.248 45.455 0.00 0.00 0.00 3.36
2973 3109 3.192422 CGGGTACATTTGCAATCAGGAAA 59.808 43.478 0.00 0.00 41.96 3.13
2979 3115 4.476628 ATTTGCAATCAGGAAATGGTCC 57.523 40.909 0.00 0.00 45.16 4.46
2988 3124 2.130272 GGAAATGGTCCCCTGTTCTC 57.870 55.000 0.00 0.00 41.10 2.87
2989 3125 1.341089 GGAAATGGTCCCCTGTTCTCC 60.341 57.143 0.00 0.00 41.10 3.71
2990 3126 1.636003 GAAATGGTCCCCTGTTCTCCT 59.364 52.381 0.00 0.00 0.00 3.69
2991 3127 2.661176 AATGGTCCCCTGTTCTCCTA 57.339 50.000 0.00 0.00 0.00 2.94
2992 3128 2.182516 ATGGTCCCCTGTTCTCCTAG 57.817 55.000 0.00 0.00 0.00 3.02
2993 3129 0.617820 TGGTCCCCTGTTCTCCTAGC 60.618 60.000 0.00 0.00 0.00 3.42
2994 3130 0.325765 GGTCCCCTGTTCTCCTAGCT 60.326 60.000 0.00 0.00 0.00 3.32
2995 3131 1.574263 GTCCCCTGTTCTCCTAGCTT 58.426 55.000 0.00 0.00 0.00 3.74
2996 3132 1.483004 GTCCCCTGTTCTCCTAGCTTC 59.517 57.143 0.00 0.00 0.00 3.86
2997 3133 1.362932 TCCCCTGTTCTCCTAGCTTCT 59.637 52.381 0.00 0.00 0.00 2.85
2998 3134 1.484240 CCCCTGTTCTCCTAGCTTCTG 59.516 57.143 0.00 0.00 0.00 3.02
2999 3135 1.134551 CCCTGTTCTCCTAGCTTCTGC 60.135 57.143 0.00 0.00 40.05 4.26
3016 3152 4.016629 CTGCAAGCTCACGCGCAA 62.017 61.111 5.73 0.00 42.32 4.85
3017 3153 3.923356 CTGCAAGCTCACGCGCAAG 62.923 63.158 5.73 4.72 42.32 4.01
3018 3154 4.748679 GCAAGCTCACGCGCAAGG 62.749 66.667 5.73 0.00 42.32 3.61
3029 3165 3.015799 GCGCAAGGGAATTTCGTTC 57.984 52.632 0.30 0.00 35.06 3.95
3030 3166 0.521735 GCGCAAGGGAATTTCGTTCT 59.478 50.000 0.30 0.00 35.78 3.01
3031 3167 1.465856 GCGCAAGGGAATTTCGTTCTC 60.466 52.381 0.30 0.00 37.60 2.87
3035 3171 2.115343 AGGGAATTTCGTTCTCTGGC 57.885 50.000 0.00 0.00 46.01 4.85
3036 3172 1.351017 AGGGAATTTCGTTCTCTGGCA 59.649 47.619 0.00 0.00 46.01 4.92
3037 3173 2.159382 GGGAATTTCGTTCTCTGGCAA 58.841 47.619 0.00 0.00 34.30 4.52
3038 3174 2.755103 GGGAATTTCGTTCTCTGGCAAT 59.245 45.455 0.00 0.00 34.30 3.56
3039 3175 3.428045 GGGAATTTCGTTCTCTGGCAATG 60.428 47.826 0.00 0.00 34.30 2.82
3040 3176 3.191371 GGAATTTCGTTCTCTGGCAATGT 59.809 43.478 0.00 0.00 37.01 2.71
3041 3177 3.837213 ATTTCGTTCTCTGGCAATGTG 57.163 42.857 0.00 0.00 0.00 3.21
3042 3178 2.542020 TTCGTTCTCTGGCAATGTGA 57.458 45.000 0.00 0.00 0.00 3.58
3043 3179 2.542020 TCGTTCTCTGGCAATGTGAA 57.458 45.000 0.00 0.00 0.00 3.18
3044 3180 3.057969 TCGTTCTCTGGCAATGTGAAT 57.942 42.857 0.00 0.00 0.00 2.57
3045 3181 3.002791 TCGTTCTCTGGCAATGTGAATC 58.997 45.455 0.00 0.00 0.00 2.52
3046 3182 2.743664 CGTTCTCTGGCAATGTGAATCA 59.256 45.455 0.00 0.00 0.00 2.57
3047 3183 3.425359 CGTTCTCTGGCAATGTGAATCAC 60.425 47.826 6.41 6.41 34.56 3.06
3048 3184 2.715046 TCTCTGGCAATGTGAATCACC 58.285 47.619 11.24 0.00 32.73 4.02
3049 3185 2.306805 TCTCTGGCAATGTGAATCACCT 59.693 45.455 11.24 0.00 32.73 4.00
3050 3186 2.422479 CTCTGGCAATGTGAATCACCTG 59.578 50.000 11.24 9.29 32.73 4.00
3051 3187 2.165167 CTGGCAATGTGAATCACCTGT 58.835 47.619 11.24 0.00 32.73 4.00
3052 3188 2.559668 CTGGCAATGTGAATCACCTGTT 59.440 45.455 11.24 0.70 32.73 3.16
3053 3189 2.296752 TGGCAATGTGAATCACCTGTTG 59.703 45.455 11.24 13.35 32.73 3.33
3054 3190 2.557924 GGCAATGTGAATCACCTGTTGA 59.442 45.455 19.93 0.49 39.11 3.18
3055 3191 3.568538 GCAATGTGAATCACCTGTTGAC 58.431 45.455 19.93 11.51 36.92 3.18
3056 3192 3.254166 GCAATGTGAATCACCTGTTGACT 59.746 43.478 19.93 0.00 36.92 3.41
3057 3193 4.455533 GCAATGTGAATCACCTGTTGACTA 59.544 41.667 19.93 0.00 36.92 2.59
3058 3194 5.391310 GCAATGTGAATCACCTGTTGACTAG 60.391 44.000 19.93 0.00 36.92 2.57
3059 3195 3.664107 TGTGAATCACCTGTTGACTAGC 58.336 45.455 11.24 0.00 36.92 3.42
3060 3196 3.070878 TGTGAATCACCTGTTGACTAGCA 59.929 43.478 11.24 0.00 36.92 3.49
3061 3197 4.065088 GTGAATCACCTGTTGACTAGCAA 58.935 43.478 1.10 0.00 36.92 3.91
3062 3198 4.515191 GTGAATCACCTGTTGACTAGCAAA 59.485 41.667 1.10 0.00 38.44 3.68
3063 3199 5.008613 GTGAATCACCTGTTGACTAGCAAAA 59.991 40.000 1.10 0.00 38.44 2.44
3064 3200 5.008613 TGAATCACCTGTTGACTAGCAAAAC 59.991 40.000 1.86 0.00 38.44 2.43
3065 3201 4.150897 TCACCTGTTGACTAGCAAAACT 57.849 40.909 1.86 0.00 38.44 2.66
3066 3202 4.523083 TCACCTGTTGACTAGCAAAACTT 58.477 39.130 1.86 0.00 38.44 2.66
3067 3203 4.335315 TCACCTGTTGACTAGCAAAACTTG 59.665 41.667 1.86 0.00 38.44 3.16
3079 3215 2.921126 CAAAACTTGCCAGTGACGATC 58.079 47.619 0.00 0.00 31.60 3.69
3080 3216 2.549754 CAAAACTTGCCAGTGACGATCT 59.450 45.455 0.00 0.00 31.60 2.75
3081 3217 2.550830 AACTTGCCAGTGACGATCTT 57.449 45.000 0.00 0.00 31.60 2.40
3082 3218 1.800805 ACTTGCCAGTGACGATCTTG 58.199 50.000 0.00 0.00 0.00 3.02
3083 3219 1.070758 ACTTGCCAGTGACGATCTTGT 59.929 47.619 0.00 0.00 0.00 3.16
3084 3220 2.299013 ACTTGCCAGTGACGATCTTGTA 59.701 45.455 0.00 0.00 0.00 2.41
3085 3221 3.055819 ACTTGCCAGTGACGATCTTGTAT 60.056 43.478 0.00 0.00 0.00 2.29
3086 3222 3.165058 TGCCAGTGACGATCTTGTATC 57.835 47.619 0.00 0.00 0.00 2.24
3087 3223 2.159099 TGCCAGTGACGATCTTGTATCC 60.159 50.000 0.00 0.00 0.00 2.59
3088 3224 2.159099 GCCAGTGACGATCTTGTATCCA 60.159 50.000 0.00 0.00 0.00 3.41
3089 3225 3.493350 GCCAGTGACGATCTTGTATCCAT 60.493 47.826 0.00 0.00 0.00 3.41
3090 3226 4.053983 CCAGTGACGATCTTGTATCCATG 58.946 47.826 0.00 0.00 0.00 3.66
3091 3227 4.202151 CCAGTGACGATCTTGTATCCATGA 60.202 45.833 0.00 0.00 0.00 3.07
3092 3228 5.510349 CCAGTGACGATCTTGTATCCATGAT 60.510 44.000 0.00 0.00 37.97 2.45
3093 3229 5.632764 CAGTGACGATCTTGTATCCATGATC 59.367 44.000 0.00 4.59 43.62 2.92
3094 3230 5.302823 AGTGACGATCTTGTATCCATGATCA 59.697 40.000 12.64 0.00 45.65 2.92
3095 3231 5.985530 GTGACGATCTTGTATCCATGATCAA 59.014 40.000 12.64 0.00 45.65 2.57
3096 3232 6.648310 GTGACGATCTTGTATCCATGATCAAT 59.352 38.462 12.64 0.00 45.65 2.57
3097 3233 6.870439 TGACGATCTTGTATCCATGATCAATC 59.130 38.462 12.64 9.99 45.65 2.67
3098 3234 6.169094 ACGATCTTGTATCCATGATCAATCC 58.831 40.000 12.64 0.00 45.65 3.01
3099 3235 6.168389 CGATCTTGTATCCATGATCAATCCA 58.832 40.000 12.64 0.00 45.65 3.41
3100 3236 6.822170 CGATCTTGTATCCATGATCAATCCAT 59.178 38.462 12.64 0.00 45.65 3.41
3101 3237 7.983484 CGATCTTGTATCCATGATCAATCCATA 59.017 37.037 12.64 0.00 45.65 2.74
3102 3238 9.327628 GATCTTGTATCCATGATCAATCCATAG 57.672 37.037 0.00 0.00 45.13 2.23
3103 3239 7.627311 TCTTGTATCCATGATCAATCCATAGG 58.373 38.462 0.00 0.00 0.00 2.57
3104 3240 6.957853 TGTATCCATGATCAATCCATAGGT 57.042 37.500 0.00 0.00 0.00 3.08
3105 3241 8.448068 TTGTATCCATGATCAATCCATAGGTA 57.552 34.615 0.00 0.00 0.00 3.08
3106 3242 8.082672 TGTATCCATGATCAATCCATAGGTAG 57.917 38.462 0.00 0.00 0.00 3.18
3107 3243 5.426689 TCCATGATCAATCCATAGGTAGC 57.573 43.478 0.00 0.00 0.00 3.58
3108 3244 5.096521 TCCATGATCAATCCATAGGTAGCT 58.903 41.667 0.00 0.00 0.00 3.32
3109 3245 5.046087 TCCATGATCAATCCATAGGTAGCTG 60.046 44.000 4.27 0.00 0.00 4.24
3110 3246 5.046087 CCATGATCAATCCATAGGTAGCTGA 60.046 44.000 4.27 0.00 0.00 4.26
3111 3247 5.474578 TGATCAATCCATAGGTAGCTGAC 57.525 43.478 4.27 0.00 0.00 3.51
3119 3255 4.913126 GGTAGCTGACCGGTTCTG 57.087 61.111 9.42 7.53 38.87 3.02
3120 3256 1.218316 GGTAGCTGACCGGTTCTGG 59.782 63.158 9.42 0.15 38.87 3.86
3121 3257 1.448013 GTAGCTGACCGGTTCTGGC 60.448 63.158 9.42 11.15 0.00 4.85
3122 3258 2.656069 TAGCTGACCGGTTCTGGCC 61.656 63.158 9.42 0.00 0.00 5.36
3123 3259 4.329545 GCTGACCGGTTCTGGCCA 62.330 66.667 9.42 4.71 0.00 5.36
3124 3260 2.358737 CTGACCGGTTCTGGCCAC 60.359 66.667 9.42 0.00 0.00 5.01
3125 3261 3.901797 CTGACCGGTTCTGGCCACC 62.902 68.421 9.42 0.00 0.00 4.61
3126 3262 3.637273 GACCGGTTCTGGCCACCT 61.637 66.667 9.42 0.00 31.32 4.00
3127 3263 3.175710 ACCGGTTCTGGCCACCTT 61.176 61.111 0.00 0.00 31.32 3.50
3128 3264 2.359975 CCGGTTCTGGCCACCTTC 60.360 66.667 0.00 0.00 31.32 3.46
3129 3265 2.750350 CGGTTCTGGCCACCTTCT 59.250 61.111 0.00 0.00 31.32 2.85
3130 3266 1.073199 CGGTTCTGGCCACCTTCTT 59.927 57.895 0.00 0.00 31.32 2.52
3131 3267 0.537371 CGGTTCTGGCCACCTTCTTT 60.537 55.000 0.00 0.00 31.32 2.52
3132 3268 0.961753 GGTTCTGGCCACCTTCTTTG 59.038 55.000 0.00 0.00 0.00 2.77
3133 3269 1.478654 GGTTCTGGCCACCTTCTTTGA 60.479 52.381 0.00 0.00 0.00 2.69
3134 3270 1.882623 GTTCTGGCCACCTTCTTTGAG 59.117 52.381 0.00 0.00 0.00 3.02
3135 3271 1.434188 TCTGGCCACCTTCTTTGAGA 58.566 50.000 0.00 0.00 0.00 3.27
3136 3272 1.988107 TCTGGCCACCTTCTTTGAGAT 59.012 47.619 0.00 0.00 0.00 2.75
3137 3273 2.026822 TCTGGCCACCTTCTTTGAGATC 60.027 50.000 0.00 0.00 0.00 2.75
3138 3274 1.704628 TGGCCACCTTCTTTGAGATCA 59.295 47.619 0.00 0.00 0.00 2.92
3139 3275 2.309755 TGGCCACCTTCTTTGAGATCAT 59.690 45.455 0.00 0.00 0.00 2.45
3140 3276 2.948315 GGCCACCTTCTTTGAGATCATC 59.052 50.000 0.00 0.00 0.00 2.92
3141 3277 3.614092 GCCACCTTCTTTGAGATCATCA 58.386 45.455 0.00 0.00 35.62 3.07
3142 3278 3.626670 GCCACCTTCTTTGAGATCATCAG 59.373 47.826 0.00 0.00 39.68 2.90
3143 3279 3.626670 CCACCTTCTTTGAGATCATCAGC 59.373 47.826 0.00 0.00 39.68 4.26
3144 3280 4.515361 CACCTTCTTTGAGATCATCAGCT 58.485 43.478 0.00 0.00 39.68 4.24
3145 3281 5.396101 CCACCTTCTTTGAGATCATCAGCTA 60.396 44.000 0.00 0.00 39.68 3.32
3146 3282 6.111382 CACCTTCTTTGAGATCATCAGCTAA 58.889 40.000 0.00 0.00 39.68 3.09
3147 3283 6.766944 CACCTTCTTTGAGATCATCAGCTAAT 59.233 38.462 0.00 0.00 39.68 1.73
3148 3284 6.766944 ACCTTCTTTGAGATCATCAGCTAATG 59.233 38.462 0.00 0.00 39.68 1.90
3149 3285 6.990939 CCTTCTTTGAGATCATCAGCTAATGA 59.009 38.462 0.93 0.93 43.70 2.57
3151 3287 8.975663 TTCTTTGAGATCATCAGCTAATGATT 57.024 30.769 13.75 4.30 46.97 2.57
3152 3288 8.975663 TCTTTGAGATCATCAGCTAATGATTT 57.024 30.769 13.75 8.20 46.97 2.17
3153 3289 8.837389 TCTTTGAGATCATCAGCTAATGATTTG 58.163 33.333 13.75 0.00 46.97 2.32
3154 3290 6.555812 TGAGATCATCAGCTAATGATTTGC 57.444 37.500 13.75 7.09 46.97 3.68
3155 3291 6.059484 TGAGATCATCAGCTAATGATTTGCA 58.941 36.000 13.75 9.37 46.97 4.08
3156 3292 6.204882 TGAGATCATCAGCTAATGATTTGCAG 59.795 38.462 13.75 6.06 46.97 4.41
3157 3293 6.062749 AGATCATCAGCTAATGATTTGCAGT 58.937 36.000 13.75 0.00 46.97 4.40
3158 3294 5.746307 TCATCAGCTAATGATTTGCAGTC 57.254 39.130 13.60 0.00 46.97 3.51
3159 3295 5.434408 TCATCAGCTAATGATTTGCAGTCT 58.566 37.500 13.60 0.00 46.97 3.24
3160 3296 5.296035 TCATCAGCTAATGATTTGCAGTCTG 59.704 40.000 13.60 8.14 46.97 3.51
3161 3297 3.376234 TCAGCTAATGATTTGCAGTCTGC 59.624 43.478 18.32 18.32 37.10 4.26
3162 3298 3.377485 CAGCTAATGATTTGCAGTCTGCT 59.623 43.478 24.76 5.54 45.31 4.24
3163 3299 4.015084 AGCTAATGATTTGCAGTCTGCTT 58.985 39.130 24.76 12.37 45.31 3.91
3164 3300 4.461781 AGCTAATGATTTGCAGTCTGCTTT 59.538 37.500 24.76 10.05 45.31 3.51
3165 3301 4.797349 GCTAATGATTTGCAGTCTGCTTTC 59.203 41.667 24.76 17.70 45.31 2.62
3166 3302 3.863142 ATGATTTGCAGTCTGCTTTCC 57.137 42.857 24.76 12.36 45.31 3.13
3167 3303 2.585330 TGATTTGCAGTCTGCTTTCCA 58.415 42.857 24.76 14.55 45.31 3.53
3168 3304 2.294233 TGATTTGCAGTCTGCTTTCCAC 59.706 45.455 24.76 11.93 45.31 4.02
3169 3305 1.032014 TTTGCAGTCTGCTTTCCACC 58.968 50.000 24.76 0.00 45.31 4.61
3170 3306 0.106769 TTGCAGTCTGCTTTCCACCA 60.107 50.000 24.76 0.00 45.31 4.17
3171 3307 0.535780 TGCAGTCTGCTTTCCACCAG 60.536 55.000 24.76 0.00 45.31 4.00
3172 3308 1.239968 GCAGTCTGCTTTCCACCAGG 61.240 60.000 17.89 0.00 40.96 4.45
3173 3309 1.073897 AGTCTGCTTTCCACCAGGC 59.926 57.895 0.00 0.00 34.01 4.85
3174 3310 1.073897 GTCTGCTTTCCACCAGGCT 59.926 57.895 0.00 0.00 31.25 4.58
3175 3311 0.324943 GTCTGCTTTCCACCAGGCTA 59.675 55.000 0.00 0.00 31.25 3.93
3176 3312 1.065126 GTCTGCTTTCCACCAGGCTAT 60.065 52.381 0.00 0.00 31.25 2.97
3177 3313 1.065199 TCTGCTTTCCACCAGGCTATG 60.065 52.381 0.00 0.00 33.74 2.23
3178 3314 0.680921 TGCTTTCCACCAGGCTATGC 60.681 55.000 0.00 0.00 33.74 3.14
3193 3329 5.104562 GGCTATGCCCGTTAAAACTATTC 57.895 43.478 0.00 0.00 44.06 1.75
3194 3330 4.023450 GGCTATGCCCGTTAAAACTATTCC 60.023 45.833 0.00 0.00 44.06 3.01
3195 3331 4.023450 GCTATGCCCGTTAAAACTATTCCC 60.023 45.833 0.00 0.00 0.00 3.97
3196 3332 3.724732 TGCCCGTTAAAACTATTCCCT 57.275 42.857 0.00 0.00 0.00 4.20
3197 3333 3.613030 TGCCCGTTAAAACTATTCCCTC 58.387 45.455 0.00 0.00 0.00 4.30
3198 3334 2.947652 GCCCGTTAAAACTATTCCCTCC 59.052 50.000 0.00 0.00 0.00 4.30
3199 3335 3.200483 CCCGTTAAAACTATTCCCTCCG 58.800 50.000 0.00 0.00 0.00 4.63
3200 3336 3.369787 CCCGTTAAAACTATTCCCTCCGT 60.370 47.826 0.00 0.00 0.00 4.69
3201 3337 4.256110 CCGTTAAAACTATTCCCTCCGTT 58.744 43.478 0.00 0.00 0.00 4.44
3202 3338 4.330894 CCGTTAAAACTATTCCCTCCGTTC 59.669 45.833 0.00 0.00 0.00 3.95
3203 3339 4.032104 CGTTAAAACTATTCCCTCCGTTCG 59.968 45.833 0.00 0.00 0.00 3.95
3204 3340 2.685850 AAACTATTCCCTCCGTTCGG 57.314 50.000 4.74 4.74 0.00 4.30
3205 3341 1.856629 AACTATTCCCTCCGTTCGGA 58.143 50.000 13.34 13.34 0.00 4.55
3206 3342 1.856629 ACTATTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.81 42.24 4.30
3208 3344 2.770232 ACTATTCCCTCCGTTCGGAATT 59.230 45.455 14.79 0.78 44.75 2.17
3209 3345 3.962718 ACTATTCCCTCCGTTCGGAATTA 59.037 43.478 14.79 0.88 44.75 1.40
3210 3346 2.678471 TTCCCTCCGTTCGGAATTAC 57.322 50.000 14.79 0.00 33.14 1.89
3211 3347 1.856629 TCCCTCCGTTCGGAATTACT 58.143 50.000 14.79 0.00 33.41 2.24
3212 3348 2.181975 TCCCTCCGTTCGGAATTACTT 58.818 47.619 14.79 0.00 33.41 2.24
3213 3349 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3214 3350 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3215 3351 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3216 3352 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3217 3353 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3218 3354 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3219 3355 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3220 3356 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3221 3357 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3222 3358 3.250744 TCGGAATTACTTGTCGCAGAAG 58.749 45.455 0.00 0.00 39.69 2.85
3223 3359 2.993899 CGGAATTACTTGTCGCAGAAGT 59.006 45.455 0.00 0.00 39.69 3.01
3224 3360 3.181530 CGGAATTACTTGTCGCAGAAGTG 60.182 47.826 8.33 0.00 39.69 3.16
3225 3361 3.125316 GGAATTACTTGTCGCAGAAGTGG 59.875 47.826 8.33 0.00 39.69 4.00
3226 3362 3.678056 ATTACTTGTCGCAGAAGTGGA 57.322 42.857 8.33 0.41 39.69 4.02
3227 3363 3.678056 TTACTTGTCGCAGAAGTGGAT 57.322 42.857 8.33 0.00 39.69 3.41
3228 3364 1.800805 ACTTGTCGCAGAAGTGGATG 58.199 50.000 0.00 0.00 39.69 3.51
3229 3365 1.070758 ACTTGTCGCAGAAGTGGATGT 59.929 47.619 0.00 0.00 39.69 3.06
3230 3366 2.299013 ACTTGTCGCAGAAGTGGATGTA 59.701 45.455 0.00 0.00 39.69 2.29
3231 3367 3.055819 ACTTGTCGCAGAAGTGGATGTAT 60.056 43.478 0.00 0.00 39.69 2.29
3232 3368 3.165058 TGTCGCAGAAGTGGATGTATC 57.835 47.619 0.00 0.00 39.69 2.24
3233 3369 2.760650 TGTCGCAGAAGTGGATGTATCT 59.239 45.455 0.00 0.00 39.69 1.98
3234 3370 3.951680 TGTCGCAGAAGTGGATGTATCTA 59.048 43.478 0.00 0.00 39.69 1.98
3235 3371 4.036852 TGTCGCAGAAGTGGATGTATCTAG 59.963 45.833 0.00 0.00 39.69 2.43
3236 3372 4.276183 GTCGCAGAAGTGGATGTATCTAGA 59.724 45.833 0.00 0.00 39.69 2.43
3237 3373 4.276183 TCGCAGAAGTGGATGTATCTAGAC 59.724 45.833 0.00 0.00 0.00 2.59
3238 3374 4.036852 CGCAGAAGTGGATGTATCTAGACA 59.963 45.833 0.00 0.00 0.00 3.41
3239 3375 5.278709 CGCAGAAGTGGATGTATCTAGACAT 60.279 44.000 0.00 0.00 42.82 3.06
3240 3376 6.072452 CGCAGAAGTGGATGTATCTAGACATA 60.072 42.308 0.00 0.00 40.18 2.29
3241 3377 7.362487 CGCAGAAGTGGATGTATCTAGACATAT 60.362 40.741 0.00 0.00 40.18 1.78
3242 3378 8.310382 GCAGAAGTGGATGTATCTAGACATATT 58.690 37.037 0.00 0.00 40.18 1.28
3260 3396 9.561069 AGACATATTTTAGTTCCACATACATCC 57.439 33.333 0.00 0.00 0.00 3.51
3261 3397 9.337396 GACATATTTTAGTTCCACATACATCCA 57.663 33.333 0.00 0.00 0.00 3.41
3262 3398 9.866655 ACATATTTTAGTTCCACATACATCCAT 57.133 29.630 0.00 0.00 0.00 3.41
3266 3402 7.639113 TTTAGTTCCACATACATCCATTTCC 57.361 36.000 0.00 0.00 0.00 3.13
3267 3403 4.199310 AGTTCCACATACATCCATTTCCG 58.801 43.478 0.00 0.00 0.00 4.30
3268 3404 4.080582 AGTTCCACATACATCCATTTCCGA 60.081 41.667 0.00 0.00 0.00 4.55
3269 3405 4.071961 TCCACATACATCCATTTCCGAG 57.928 45.455 0.00 0.00 0.00 4.63
3270 3406 3.709141 TCCACATACATCCATTTCCGAGA 59.291 43.478 0.00 0.00 0.00 4.04
3271 3407 3.809832 CCACATACATCCATTTCCGAGAC 59.190 47.826 0.00 0.00 0.00 3.36
3272 3408 4.441792 CACATACATCCATTTCCGAGACA 58.558 43.478 0.00 0.00 0.00 3.41
3273 3409 4.875536 CACATACATCCATTTCCGAGACAA 59.124 41.667 0.00 0.00 0.00 3.18
3274 3410 5.353956 CACATACATCCATTTCCGAGACAAA 59.646 40.000 0.00 0.00 0.00 2.83
3275 3411 6.038603 CACATACATCCATTTCCGAGACAAAT 59.961 38.462 0.00 0.00 0.00 2.32
3276 3412 7.226523 CACATACATCCATTTCCGAGACAAATA 59.773 37.037 0.00 0.00 0.00 1.40
3277 3413 7.773224 ACATACATCCATTTCCGAGACAAATAA 59.227 33.333 0.00 0.00 0.00 1.40
3278 3414 8.786898 CATACATCCATTTCCGAGACAAATAAT 58.213 33.333 0.00 0.00 0.00 1.28
3279 3415 7.645058 ACATCCATTTCCGAGACAAATAATT 57.355 32.000 0.00 0.00 0.00 1.40
3280 3416 7.707104 ACATCCATTTCCGAGACAAATAATTC 58.293 34.615 0.00 0.00 0.00 2.17
3281 3417 6.693315 TCCATTTCCGAGACAAATAATTCC 57.307 37.500 0.00 0.00 0.00 3.01
3282 3418 5.295787 TCCATTTCCGAGACAAATAATTCCG 59.704 40.000 0.00 0.00 0.00 4.30
3283 3419 5.295787 CCATTTCCGAGACAAATAATTCCGA 59.704 40.000 0.00 0.00 0.00 4.55
3284 3420 6.183360 CCATTTCCGAGACAAATAATTCCGAA 60.183 38.462 0.00 0.00 0.00 4.30
3285 3421 5.789710 TTCCGAGACAAATAATTCCGAAC 57.210 39.130 0.00 0.00 0.00 3.95
3286 3422 3.861113 TCCGAGACAAATAATTCCGAACG 59.139 43.478 0.00 0.00 0.00 3.95
3287 3423 3.000925 CCGAGACAAATAATTCCGAACGG 59.999 47.826 6.94 6.94 0.00 4.44
3288 3424 3.861113 CGAGACAAATAATTCCGAACGGA 59.139 43.478 12.04 12.04 43.52 4.69
3289 3425 4.026804 CGAGACAAATAATTCCGAACGGAG 60.027 45.833 15.34 5.60 46.06 4.63
3290 3426 4.189231 AGACAAATAATTCCGAACGGAGG 58.811 43.478 15.34 4.52 46.06 4.30
3291 3427 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
3292 3428 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
3293 3429 3.470645 AATAATTCCGAACGGAGGGAG 57.529 47.619 15.34 0.00 46.06 4.30
3294 3430 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
3295 3431 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3296 3432 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
3297 3433 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
3298 3434 0.549950 TCCGAACGGAGGGAGTAGAT 59.450 55.000 12.04 0.00 39.76 1.98
3299 3435 0.669077 CCGAACGGAGGGAGTAGATG 59.331 60.000 7.53 0.00 37.50 2.90
3300 3436 0.030908 CGAACGGAGGGAGTAGATGC 59.969 60.000 0.00 0.00 0.00 3.91
3301 3437 0.389757 GAACGGAGGGAGTAGATGCC 59.610 60.000 0.00 0.00 40.48 4.40
3302 3438 0.325296 AACGGAGGGAGTAGATGCCA 60.325 55.000 0.00 0.00 43.31 4.92
3303 3439 0.325296 ACGGAGGGAGTAGATGCCAA 60.325 55.000 0.00 0.00 43.31 4.52
3304 3440 0.830648 CGGAGGGAGTAGATGCCAAA 59.169 55.000 0.00 0.00 43.31 3.28
3305 3441 1.202580 CGGAGGGAGTAGATGCCAAAG 60.203 57.143 0.00 0.00 43.31 2.77
3306 3442 1.475930 GGAGGGAGTAGATGCCAAAGC 60.476 57.143 0.00 0.00 43.31 3.51
3315 3451 4.775295 TGCCAAAGCATGCAAACC 57.225 50.000 21.98 4.47 46.52 3.27
3316 3452 1.071128 TGCCAAAGCATGCAAACCC 59.929 52.632 21.98 5.60 46.52 4.11
3317 3453 1.071128 GCCAAAGCATGCAAACCCA 59.929 52.632 21.98 0.00 39.53 4.51
3318 3454 0.321830 GCCAAAGCATGCAAACCCAT 60.322 50.000 21.98 0.00 39.53 4.00
3319 3455 1.729284 CCAAAGCATGCAAACCCATC 58.271 50.000 21.98 0.00 0.00 3.51
3320 3456 1.002201 CCAAAGCATGCAAACCCATCA 59.998 47.619 21.98 0.00 0.00 3.07
3321 3457 2.550423 CCAAAGCATGCAAACCCATCAA 60.550 45.455 21.98 0.00 0.00 2.57
3322 3458 2.460757 AAGCATGCAAACCCATCAAC 57.539 45.000 21.98 0.00 0.00 3.18
3323 3459 1.340088 AGCATGCAAACCCATCAACA 58.660 45.000 21.98 0.00 0.00 3.33
3324 3460 1.693062 AGCATGCAAACCCATCAACAA 59.307 42.857 21.98 0.00 0.00 2.83
3325 3461 2.070783 GCATGCAAACCCATCAACAAG 58.929 47.619 14.21 0.00 0.00 3.16
3326 3462 2.690786 CATGCAAACCCATCAACAAGG 58.309 47.619 0.00 0.00 0.00 3.61
3327 3463 1.786937 TGCAAACCCATCAACAAGGT 58.213 45.000 0.00 0.00 34.60 3.50
3328 3464 1.686052 TGCAAACCCATCAACAAGGTC 59.314 47.619 0.00 0.00 32.00 3.85
3329 3465 1.963515 GCAAACCCATCAACAAGGTCT 59.036 47.619 0.00 0.00 32.00 3.85
3330 3466 2.288395 GCAAACCCATCAACAAGGTCTG 60.288 50.000 0.00 0.00 32.00 3.51
3331 3467 2.958355 CAAACCCATCAACAAGGTCTGT 59.042 45.455 0.00 0.00 41.27 3.41
3332 3468 2.568623 ACCCATCAACAAGGTCTGTC 57.431 50.000 0.00 0.00 37.23 3.51
3333 3469 1.073923 ACCCATCAACAAGGTCTGTCC 59.926 52.381 0.00 0.00 37.23 4.02
3334 3470 1.614317 CCCATCAACAAGGTCTGTCCC 60.614 57.143 0.00 0.00 37.23 4.46
3335 3471 1.352352 CCATCAACAAGGTCTGTCCCT 59.648 52.381 0.00 0.00 37.23 4.20
3336 3472 2.616510 CCATCAACAAGGTCTGTCCCTC 60.617 54.545 0.00 0.00 37.23 4.30
3337 3473 1.801242 TCAACAAGGTCTGTCCCTCA 58.199 50.000 0.00 0.00 37.23 3.86
3338 3474 1.694150 TCAACAAGGTCTGTCCCTCAG 59.306 52.381 0.00 0.00 44.85 3.35
3339 3475 0.398318 AACAAGGTCTGTCCCTCAGC 59.602 55.000 0.00 0.00 43.32 4.26
3340 3476 1.298014 CAAGGTCTGTCCCTCAGCC 59.702 63.158 0.00 0.00 43.32 4.85
3341 3477 1.159664 AAGGTCTGTCCCTCAGCCT 59.840 57.895 0.00 0.00 45.48 4.58
3342 3478 0.907230 AAGGTCTGTCCCTCAGCCTC 60.907 60.000 9.76 0.00 44.05 4.70
3343 3479 2.363172 GGTCTGTCCCTCAGCCTCC 61.363 68.421 0.00 0.00 43.32 4.30
3344 3480 1.305718 GTCTGTCCCTCAGCCTCCT 60.306 63.158 0.00 0.00 43.32 3.69
3345 3481 1.305633 TCTGTCCCTCAGCCTCCTG 60.306 63.158 0.00 0.00 43.32 3.86
3346 3482 1.305633 CTGTCCCTCAGCCTCCTGA 60.306 63.158 0.00 0.00 45.54 3.86
3352 3488 3.890313 TCAGCCTCCTGAGCACAA 58.110 55.556 0.00 0.00 42.98 3.33
3353 3489 2.380365 TCAGCCTCCTGAGCACAAT 58.620 52.632 0.00 0.00 42.98 2.71
3354 3490 0.694771 TCAGCCTCCTGAGCACAATT 59.305 50.000 0.00 0.00 42.98 2.32
3355 3491 1.074405 TCAGCCTCCTGAGCACAATTT 59.926 47.619 0.00 0.00 42.98 1.82
3356 3492 1.201647 CAGCCTCCTGAGCACAATTTG 59.798 52.381 0.00 0.00 41.77 2.32
3367 3503 0.174162 CACAATTTGCAGGGCCTAGC 59.826 55.000 5.28 13.47 0.00 3.42
3368 3504 0.040204 ACAATTTGCAGGGCCTAGCT 59.960 50.000 22.57 0.00 0.00 3.32
3369 3505 1.284785 ACAATTTGCAGGGCCTAGCTA 59.715 47.619 22.57 15.55 0.00 3.32
3370 3506 1.952296 CAATTTGCAGGGCCTAGCTAG 59.048 52.381 22.57 14.20 0.00 3.42
3371 3507 0.179006 ATTTGCAGGGCCTAGCTAGC 60.179 55.000 22.57 6.62 0.00 3.42
3372 3508 1.274703 TTTGCAGGGCCTAGCTAGCT 61.275 55.000 23.12 23.12 0.00 3.32
3373 3509 1.274703 TTGCAGGGCCTAGCTAGCTT 61.275 55.000 24.88 7.25 0.00 3.74
3374 3510 1.070615 GCAGGGCCTAGCTAGCTTC 59.929 63.158 24.88 12.31 0.00 3.86
3375 3511 1.751563 CAGGGCCTAGCTAGCTTCC 59.248 63.158 24.88 20.16 0.00 3.46
3376 3512 0.762461 CAGGGCCTAGCTAGCTTCCT 60.762 60.000 24.88 20.16 0.00 3.36
3377 3513 0.762461 AGGGCCTAGCTAGCTTCCTG 60.762 60.000 24.88 10.11 0.00 3.86
3378 3514 1.070615 GGCCTAGCTAGCTTCCTGC 59.929 63.158 24.88 18.83 43.29 4.85
3379 3515 1.070615 GCCTAGCTAGCTTCCTGCC 59.929 63.158 24.88 2.27 44.23 4.85
3380 3516 1.751563 CCTAGCTAGCTTCCTGCCC 59.248 63.158 24.88 0.00 44.23 5.36
3381 3517 1.050988 CCTAGCTAGCTTCCTGCCCA 61.051 60.000 24.88 0.24 44.23 5.36
3382 3518 1.055040 CTAGCTAGCTTCCTGCCCAT 58.945 55.000 24.88 0.00 44.23 4.00
3383 3519 1.001860 CTAGCTAGCTTCCTGCCCATC 59.998 57.143 24.88 0.00 44.23 3.51
3384 3520 1.596477 GCTAGCTTCCTGCCCATCG 60.596 63.158 7.70 0.00 44.23 3.84
3385 3521 2.032860 GCTAGCTTCCTGCCCATCGA 62.033 60.000 7.70 0.00 44.23 3.59
3386 3522 0.249657 CTAGCTTCCTGCCCATCGAC 60.250 60.000 0.00 0.00 44.23 4.20
3387 3523 0.975556 TAGCTTCCTGCCCATCGACA 60.976 55.000 0.00 0.00 44.23 4.35
3388 3524 1.377202 GCTTCCTGCCCATCGACAA 60.377 57.895 0.00 0.00 35.15 3.18
3389 3525 1.372087 GCTTCCTGCCCATCGACAAG 61.372 60.000 0.00 0.00 35.15 3.16
3390 3526 0.036010 CTTCCTGCCCATCGACAAGT 60.036 55.000 0.00 0.00 0.00 3.16
3391 3527 1.207089 CTTCCTGCCCATCGACAAGTA 59.793 52.381 0.00 0.00 0.00 2.24
3392 3528 0.824109 TCCTGCCCATCGACAAGTAG 59.176 55.000 0.00 0.00 0.00 2.57
3393 3529 0.824109 CCTGCCCATCGACAAGTAGA 59.176 55.000 0.00 0.00 0.00 2.59
3394 3530 1.471676 CCTGCCCATCGACAAGTAGAC 60.472 57.143 0.00 0.00 0.00 2.59
3395 3531 0.172578 TGCCCATCGACAAGTAGACG 59.827 55.000 0.00 0.00 36.74 4.18
3396 3532 0.172803 GCCCATCGACAAGTAGACGT 59.827 55.000 0.00 0.00 36.76 4.34
3397 3533 1.909376 CCCATCGACAAGTAGACGTG 58.091 55.000 0.00 0.00 36.76 4.49
3398 3534 1.269166 CCATCGACAAGTAGACGTGC 58.731 55.000 0.00 0.00 36.76 5.34
3399 3535 1.269166 CATCGACAAGTAGACGTGCC 58.731 55.000 0.00 0.00 36.76 5.01
3400 3536 0.172803 ATCGACAAGTAGACGTGCCC 59.827 55.000 0.00 0.00 36.76 5.36
3401 3537 0.892358 TCGACAAGTAGACGTGCCCT 60.892 55.000 0.00 0.00 36.76 5.19
3402 3538 0.038526 CGACAAGTAGACGTGCCCTT 60.039 55.000 0.00 0.00 0.00 3.95
3403 3539 1.604693 CGACAAGTAGACGTGCCCTTT 60.605 52.381 0.00 0.00 0.00 3.11
3404 3540 2.067013 GACAAGTAGACGTGCCCTTTC 58.933 52.381 0.00 0.00 0.00 2.62
3405 3541 1.692519 ACAAGTAGACGTGCCCTTTCT 59.307 47.619 0.00 0.00 0.00 2.52
3406 3542 2.069273 CAAGTAGACGTGCCCTTTCTG 58.931 52.381 0.00 0.00 0.00 3.02
3407 3543 1.629043 AGTAGACGTGCCCTTTCTGA 58.371 50.000 0.00 0.00 0.00 3.27
3408 3544 2.180276 AGTAGACGTGCCCTTTCTGAT 58.820 47.619 0.00 0.00 0.00 2.90
3409 3545 2.166664 AGTAGACGTGCCCTTTCTGATC 59.833 50.000 0.00 0.00 0.00 2.92
3410 3546 0.250513 AGACGTGCCCTTTCTGATCC 59.749 55.000 0.00 0.00 0.00 3.36
3411 3547 0.744771 GACGTGCCCTTTCTGATCCC 60.745 60.000 0.00 0.00 0.00 3.85
3412 3548 1.815421 CGTGCCCTTTCTGATCCCG 60.815 63.158 0.00 0.00 0.00 5.14
3413 3549 1.299976 GTGCCCTTTCTGATCCCGT 59.700 57.895 0.00 0.00 0.00 5.28
3414 3550 1.026718 GTGCCCTTTCTGATCCCGTG 61.027 60.000 0.00 0.00 0.00 4.94
3415 3551 2.115291 GCCCTTTCTGATCCCGTGC 61.115 63.158 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.877611 TCTCTCATTTTGTAAACCTTGTCC 57.122 37.500 0.00 0.00 0.00 4.02
4 5 8.099364 TGATCTCTCATTTTGTAAACCTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
5 6 7.721399 ACTGATCTCTCATTTTGTAAACCTTGT 59.279 33.333 0.00 0.00 0.00 3.16
6 7 8.103948 ACTGATCTCTCATTTTGTAAACCTTG 57.896 34.615 0.00 0.00 0.00 3.61
7 8 7.118390 CGACTGATCTCTCATTTTGTAAACCTT 59.882 37.037 0.00 0.00 0.00 3.50
8 9 6.591834 CGACTGATCTCTCATTTTGTAAACCT 59.408 38.462 0.00 0.00 0.00 3.50
9 10 6.183360 CCGACTGATCTCTCATTTTGTAAACC 60.183 42.308 0.00 0.00 0.00 3.27
10 11 6.369065 ACCGACTGATCTCTCATTTTGTAAAC 59.631 38.462 0.00 0.00 0.00 2.01
11 12 6.464222 ACCGACTGATCTCTCATTTTGTAAA 58.536 36.000 0.00 0.00 0.00 2.01
12 13 6.037786 ACCGACTGATCTCTCATTTTGTAA 57.962 37.500 0.00 0.00 0.00 2.41
13 14 5.661056 ACCGACTGATCTCTCATTTTGTA 57.339 39.130 0.00 0.00 0.00 2.41
14 15 4.543590 ACCGACTGATCTCTCATTTTGT 57.456 40.909 0.00 0.00 0.00 2.83
15 16 4.093998 CCAACCGACTGATCTCTCATTTTG 59.906 45.833 0.00 0.00 0.00 2.44
16 17 4.020218 TCCAACCGACTGATCTCTCATTTT 60.020 41.667 0.00 0.00 0.00 1.82
17 18 3.515502 TCCAACCGACTGATCTCTCATTT 59.484 43.478 0.00 0.00 0.00 2.32
18 19 3.099905 TCCAACCGACTGATCTCTCATT 58.900 45.455 0.00 0.00 0.00 2.57
32 33 6.757026 ATGAAAAACGTTTATTTCCAACCG 57.243 33.333 15.03 0.00 35.23 4.44
52 53 9.230122 TGAACAGAGCAAGTGATAAAAATATGA 57.770 29.630 0.00 0.00 0.00 2.15
170 171 3.508012 AGCAAACGGTATTAATTGGCACA 59.492 39.130 0.00 0.00 0.00 4.57
178 179 8.282455 TCCATATTTTCAGCAAACGGTATTAA 57.718 30.769 0.00 0.00 0.00 1.40
188 189 5.192927 CACTACCCTCCATATTTTCAGCAA 58.807 41.667 0.00 0.00 0.00 3.91
227 228 3.553828 TCCCTATTTGACATCGGTTCC 57.446 47.619 0.00 0.00 0.00 3.62
903 917 1.120714 CGTCGTCGTCAGTGTCATCG 61.121 60.000 0.00 0.00 0.00 3.84
1170 1208 7.262772 TCATAACTTCATTAACACCTAGTCCG 58.737 38.462 0.00 0.00 0.00 4.79
1295 1339 2.294233 GTCTCTGCATCCACAAAAGCAA 59.706 45.455 0.00 0.00 36.44 3.91
1408 1452 0.033504 TCGCACACCTTTCTCACCTC 59.966 55.000 0.00 0.00 0.00 3.85
1441 1494 5.088739 GCTGACAACTGGAATCAAATTACG 58.911 41.667 0.00 0.00 0.00 3.18
1957 2083 8.948631 CAGTACTGGACACATATAACATTTCT 57.051 34.615 15.49 0.00 0.00 2.52
2045 2176 4.083271 CCTTTTCTAACAACTGGCTAGTGC 60.083 45.833 2.40 0.00 37.19 4.40
2142 2273 4.563184 GCAGAAAGTTACTGTGATCTACGG 59.437 45.833 0.00 0.00 41.64 4.02
2144 2275 5.725362 AGGCAGAAAGTTACTGTGATCTAC 58.275 41.667 0.00 0.00 37.64 2.59
2193 2325 6.945435 TGACAATAAAGGGCATTCAGTTTCTA 59.055 34.615 0.00 0.00 0.00 2.10
2257 2392 2.088423 TCCATATTTGTTGACCGTGCC 58.912 47.619 0.00 0.00 0.00 5.01
2322 2457 1.296392 CGCACTCTTGGGGACATCA 59.704 57.895 0.00 0.00 42.32 3.07
2352 2487 2.355132 TCTATCTGAACTCTTCGCGGAC 59.645 50.000 6.13 0.00 0.00 4.79
2357 2492 5.895928 TGTGGATTCTATCTGAACTCTTCG 58.104 41.667 0.00 0.00 37.52 3.79
2373 2508 2.173519 CCAGCACCATCTTTGTGGATT 58.826 47.619 0.00 0.00 42.02 3.01
2377 2512 1.270550 GTTCCCAGCACCATCTTTGTG 59.729 52.381 0.00 0.00 36.79 3.33
2388 2523 1.494721 AGGTTTTCTGAGTTCCCAGCA 59.505 47.619 0.00 0.00 34.28 4.41
2398 2533 2.928801 TGCTACTGCAGGTTTTCTGA 57.071 45.000 19.93 0.00 46.18 3.27
2418 2553 4.201657 TGAAATTGGAGCATCATCGACAT 58.798 39.130 0.00 0.00 36.25 3.06
2422 2557 4.124970 TCTCTGAAATTGGAGCATCATCG 58.875 43.478 0.00 0.00 36.25 3.84
2440 2575 8.105829 ACACATTATTCAGAATCACCTTTCTCT 58.894 33.333 0.00 0.00 33.69 3.10
2480 2615 1.219393 GCCACTACAGCCCTGAGTC 59.781 63.158 1.69 0.00 0.00 3.36
2484 2619 1.522355 CATCGCCACTACAGCCCTG 60.522 63.158 0.00 0.00 0.00 4.45
2485 2620 2.903357 CATCGCCACTACAGCCCT 59.097 61.111 0.00 0.00 0.00 5.19
2486 2621 2.897350 GCATCGCCACTACAGCCC 60.897 66.667 0.00 0.00 0.00 5.19
2499 2634 4.175337 TACTGCGGCCCTGGCATC 62.175 66.667 10.86 1.27 44.11 3.91
2500 2635 4.489771 GTACTGCGGCCCTGGCAT 62.490 66.667 10.86 0.00 44.11 4.40
2503 2638 3.706373 ACAGTACTGCGGCCCTGG 61.706 66.667 22.90 0.00 0.00 4.45
2514 2649 5.840940 AAGAGTATTTCAACGCACAGTAC 57.159 39.130 0.00 0.00 0.00 2.73
2565 2700 8.840321 CGACTGGTTTGAGAAATTATTCCATAT 58.160 33.333 0.00 0.00 36.12 1.78
2586 2721 1.374758 GCAGAGGGTTCCACGACTG 60.375 63.158 0.00 0.00 0.00 3.51
2589 2724 1.899437 GATGGCAGAGGGTTCCACGA 61.899 60.000 0.00 0.00 31.94 4.35
2591 2726 0.038166 TTGATGGCAGAGGGTTCCAC 59.962 55.000 0.00 0.00 31.94 4.02
2672 2808 9.730705 ATATCGAATGAATGATGGTGATAGTTT 57.269 29.630 0.00 0.00 0.00 2.66
2686 2822 8.884124 ATTAAATGGTCCCATATCGAATGAAT 57.116 30.769 0.00 0.00 35.31 2.57
2687 2823 8.704849 AATTAAATGGTCCCATATCGAATGAA 57.295 30.769 0.00 0.00 35.31 2.57
2688 2824 7.119116 CGAATTAAATGGTCCCATATCGAATGA 59.881 37.037 0.00 0.00 35.31 2.57
2689 2825 7.119116 TCGAATTAAATGGTCCCATATCGAATG 59.881 37.037 13.67 0.00 35.31 2.67
2700 2836 6.584942 GGAAAACAACTCGAATTAAATGGTCC 59.415 38.462 0.00 0.00 0.00 4.46
2730 2866 7.270757 TGAACAATGCACAGTACTGTAAAAT 57.729 32.000 27.48 17.53 42.83 1.82
2731 2867 6.685527 TGAACAATGCACAGTACTGTAAAA 57.314 33.333 27.48 16.11 42.83 1.52
2741 2877 4.227512 TGTAAAGCTGAACAATGCACAG 57.772 40.909 0.00 0.00 35.14 3.66
2744 2880 4.142293 TGTGTTGTAAAGCTGAACAATGCA 60.142 37.500 15.03 13.60 37.87 3.96
2752 2888 3.990092 ACGATCTGTGTTGTAAAGCTGA 58.010 40.909 0.00 0.00 0.00 4.26
2761 2897 5.501413 GCAACATCATCTACGATCTGTGTTG 60.501 44.000 9.75 9.75 44.67 3.33
2762 2898 4.568359 GCAACATCATCTACGATCTGTGTT 59.432 41.667 0.00 0.00 0.00 3.32
2789 2925 3.306294 GCAAGCAAAAGTTCCCTATGCTT 60.306 43.478 5.55 5.55 46.56 3.91
2817 2953 1.583404 CACGTTCACAAACAAGCTTGC 59.417 47.619 26.27 6.38 34.93 4.01
2876 3012 5.995897 GCCTGTTTACTCTAGTCCTCAAAAA 59.004 40.000 0.00 0.00 0.00 1.94
2877 3013 5.307196 AGCCTGTTTACTCTAGTCCTCAAAA 59.693 40.000 0.00 0.00 0.00 2.44
2878 3014 4.838986 AGCCTGTTTACTCTAGTCCTCAAA 59.161 41.667 0.00 0.00 0.00 2.69
2879 3015 4.417437 AGCCTGTTTACTCTAGTCCTCAA 58.583 43.478 0.00 0.00 0.00 3.02
2880 3016 4.048970 AGCCTGTTTACTCTAGTCCTCA 57.951 45.455 0.00 0.00 0.00 3.86
2881 3017 5.653330 AGTAAGCCTGTTTACTCTAGTCCTC 59.347 44.000 1.13 0.00 39.10 3.71
2882 3018 5.581975 AGTAAGCCTGTTTACTCTAGTCCT 58.418 41.667 1.13 0.00 39.10 3.85
2883 3019 5.918426 AGTAAGCCTGTTTACTCTAGTCC 57.082 43.478 1.13 0.00 39.10 3.85
2890 3026 3.008049 CCACTGGAGTAAGCCTGTTTACT 59.992 47.826 6.17 6.17 44.38 2.24
2891 3027 3.335579 CCACTGGAGTAAGCCTGTTTAC 58.664 50.000 0.00 0.00 37.93 2.01
2892 3028 2.304761 CCCACTGGAGTAAGCCTGTTTA 59.695 50.000 0.00 0.00 37.93 2.01
2893 3029 1.073923 CCCACTGGAGTAAGCCTGTTT 59.926 52.381 0.00 0.00 37.93 2.83
2894 3030 0.693049 CCCACTGGAGTAAGCCTGTT 59.307 55.000 0.00 0.00 37.93 3.16
2895 3031 1.201429 CCCCACTGGAGTAAGCCTGT 61.201 60.000 0.00 0.00 40.26 4.00
2896 3032 1.604378 CCCCACTGGAGTAAGCCTG 59.396 63.158 0.00 0.00 35.39 4.85
2897 3033 1.616628 CCCCCACTGGAGTAAGCCT 60.617 63.158 0.00 0.00 35.39 4.58
2898 3034 2.998949 CCCCCACTGGAGTAAGCC 59.001 66.667 0.00 0.00 35.39 4.35
2899 3035 1.853250 AAGCCCCCACTGGAGTAAGC 61.853 60.000 0.00 0.00 35.39 3.09
2900 3036 1.209747 GTAAGCCCCCACTGGAGTAAG 59.790 57.143 0.00 0.00 35.39 2.34
2901 3037 1.282382 GTAAGCCCCCACTGGAGTAA 58.718 55.000 0.00 0.00 35.39 2.24
2902 3038 0.117541 TGTAAGCCCCCACTGGAGTA 59.882 55.000 0.00 0.00 35.39 2.59
2903 3039 0.550147 ATGTAAGCCCCCACTGGAGT 60.550 55.000 0.00 0.00 35.39 3.85
2904 3040 0.625849 AATGTAAGCCCCCACTGGAG 59.374 55.000 0.00 0.00 35.39 3.86
2905 3041 0.623723 GAATGTAAGCCCCCACTGGA 59.376 55.000 0.00 0.00 35.39 3.86
2906 3042 0.331278 TGAATGTAAGCCCCCACTGG 59.669 55.000 0.00 0.00 0.00 4.00
2907 3043 1.281867 TCTGAATGTAAGCCCCCACTG 59.718 52.381 0.00 0.00 0.00 3.66
2908 3044 1.561542 CTCTGAATGTAAGCCCCCACT 59.438 52.381 0.00 0.00 0.00 4.00
2909 3045 1.559682 TCTCTGAATGTAAGCCCCCAC 59.440 52.381 0.00 0.00 0.00 4.61
2910 3046 1.839994 CTCTCTGAATGTAAGCCCCCA 59.160 52.381 0.00 0.00 0.00 4.96
2911 3047 1.475930 GCTCTCTGAATGTAAGCCCCC 60.476 57.143 0.00 0.00 0.00 5.40
2912 3048 1.210478 TGCTCTCTGAATGTAAGCCCC 59.790 52.381 0.00 0.00 31.96 5.80
2913 3049 2.698855 TGCTCTCTGAATGTAAGCCC 57.301 50.000 0.00 0.00 31.96 5.19
2914 3050 4.754114 CCTAATGCTCTCTGAATGTAAGCC 59.246 45.833 0.00 0.00 31.96 4.35
2915 3051 4.213059 GCCTAATGCTCTCTGAATGTAAGC 59.787 45.833 0.00 0.00 36.87 3.09
2916 3052 5.921004 GCCTAATGCTCTCTGAATGTAAG 57.079 43.478 0.00 0.00 36.87 2.34
2930 3066 2.729028 TGGGTTAAGGAGCCTAATGC 57.271 50.000 0.00 0.00 46.39 3.56
2931 3067 3.403038 CGATGGGTTAAGGAGCCTAATG 58.597 50.000 0.00 0.00 46.39 1.90
2932 3068 2.372172 CCGATGGGTTAAGGAGCCTAAT 59.628 50.000 0.00 0.00 46.39 1.73
2933 3069 1.766496 CCGATGGGTTAAGGAGCCTAA 59.234 52.381 0.00 0.00 46.39 2.69
2934 3070 1.420430 CCGATGGGTTAAGGAGCCTA 58.580 55.000 0.00 0.00 46.39 3.93
2935 3071 1.345715 CCCGATGGGTTAAGGAGCCT 61.346 60.000 0.00 0.00 46.39 4.58
2936 3072 1.148498 CCCGATGGGTTAAGGAGCC 59.852 63.158 0.00 0.00 46.43 4.70
2937 3073 4.878878 CCCGATGGGTTAAGGAGC 57.121 61.111 0.00 0.00 38.25 4.70
2947 3083 2.687425 TGATTGCAAATGTACCCGATGG 59.313 45.455 1.71 0.00 37.80 3.51
2948 3084 3.243168 CCTGATTGCAAATGTACCCGATG 60.243 47.826 1.71 0.00 0.00 3.84
2949 3085 2.951642 CCTGATTGCAAATGTACCCGAT 59.048 45.455 1.71 0.00 0.00 4.18
2950 3086 2.026729 TCCTGATTGCAAATGTACCCGA 60.027 45.455 1.71 0.00 0.00 5.14
2951 3087 2.364632 TCCTGATTGCAAATGTACCCG 58.635 47.619 1.71 0.00 0.00 5.28
2952 3088 4.799564 TTTCCTGATTGCAAATGTACCC 57.200 40.909 1.71 0.00 0.00 3.69
2953 3089 5.111293 CCATTTCCTGATTGCAAATGTACC 58.889 41.667 1.71 0.00 36.27 3.34
2954 3090 5.723295 ACCATTTCCTGATTGCAAATGTAC 58.277 37.500 1.71 0.00 36.27 2.90
2955 3091 5.105392 GGACCATTTCCTGATTGCAAATGTA 60.105 40.000 1.71 0.00 41.95 2.29
2956 3092 4.322953 GGACCATTTCCTGATTGCAAATGT 60.323 41.667 1.71 0.00 41.95 2.71
2957 3093 4.186159 GGACCATTTCCTGATTGCAAATG 58.814 43.478 1.71 0.11 41.95 2.32
2958 3094 3.198417 GGGACCATTTCCTGATTGCAAAT 59.802 43.478 1.71 0.00 45.09 2.32
2959 3095 2.566724 GGGACCATTTCCTGATTGCAAA 59.433 45.455 1.71 0.00 45.09 3.68
2960 3096 2.178580 GGGACCATTTCCTGATTGCAA 58.821 47.619 0.00 0.00 45.09 4.08
2961 3097 1.851304 GGGACCATTTCCTGATTGCA 58.149 50.000 0.00 0.00 45.09 4.08
2976 3112 1.483004 GAAGCTAGGAGAACAGGGGAC 59.517 57.143 0.00 0.00 0.00 4.46
2977 3113 1.362932 AGAAGCTAGGAGAACAGGGGA 59.637 52.381 0.00 0.00 0.00 4.81
2978 3114 1.484240 CAGAAGCTAGGAGAACAGGGG 59.516 57.143 0.00 0.00 0.00 4.79
2979 3115 1.134551 GCAGAAGCTAGGAGAACAGGG 60.135 57.143 0.00 0.00 37.91 4.45
2980 3116 2.307934 GCAGAAGCTAGGAGAACAGG 57.692 55.000 0.00 0.00 37.91 4.00
2992 3128 1.209640 GTGAGCTTGCAGCAGAAGC 59.790 57.895 10.67 10.67 45.56 3.86
2993 3129 1.496393 CGTGAGCTTGCAGCAGAAG 59.504 57.895 10.16 0.00 45.56 2.85
2994 3130 3.646554 CGTGAGCTTGCAGCAGAA 58.353 55.556 10.16 0.00 45.56 3.02
3006 3142 0.179189 GAAATTCCCTTGCGCGTGAG 60.179 55.000 8.43 5.89 0.00 3.51
3007 3143 1.873165 GAAATTCCCTTGCGCGTGA 59.127 52.632 8.43 0.00 0.00 4.35
3008 3144 1.511887 CGAAATTCCCTTGCGCGTG 60.512 57.895 8.43 0.00 0.00 5.34
3009 3145 1.512156 AACGAAATTCCCTTGCGCGT 61.512 50.000 8.43 0.00 0.00 6.01
3010 3146 0.793104 GAACGAAATTCCCTTGCGCG 60.793 55.000 0.00 0.00 0.00 6.86
3011 3147 0.521735 AGAACGAAATTCCCTTGCGC 59.478 50.000 0.00 0.00 38.16 6.09
3012 3148 2.076863 AGAGAACGAAATTCCCTTGCG 58.923 47.619 0.00 0.00 38.16 4.85
3013 3149 2.162408 CCAGAGAACGAAATTCCCTTGC 59.838 50.000 0.00 0.00 38.16 4.01
3014 3150 2.162408 GCCAGAGAACGAAATTCCCTTG 59.838 50.000 0.00 0.00 38.16 3.61
3015 3151 2.224769 TGCCAGAGAACGAAATTCCCTT 60.225 45.455 0.00 0.00 38.16 3.95
3016 3152 1.351017 TGCCAGAGAACGAAATTCCCT 59.649 47.619 0.00 0.00 38.16 4.20
3017 3153 1.821216 TGCCAGAGAACGAAATTCCC 58.179 50.000 0.00 0.00 38.16 3.97
3018 3154 3.191371 ACATTGCCAGAGAACGAAATTCC 59.809 43.478 0.00 0.00 38.16 3.01
3019 3155 4.083324 TCACATTGCCAGAGAACGAAATTC 60.083 41.667 0.00 0.00 37.62 2.17
3020 3156 3.820467 TCACATTGCCAGAGAACGAAATT 59.180 39.130 0.00 0.00 0.00 1.82
3021 3157 3.411446 TCACATTGCCAGAGAACGAAAT 58.589 40.909 0.00 0.00 0.00 2.17
3022 3158 2.844946 TCACATTGCCAGAGAACGAAA 58.155 42.857 0.00 0.00 0.00 3.46
3023 3159 2.542020 TCACATTGCCAGAGAACGAA 57.458 45.000 0.00 0.00 0.00 3.85
3024 3160 2.542020 TTCACATTGCCAGAGAACGA 57.458 45.000 0.00 0.00 0.00 3.85
3025 3161 2.743664 TGATTCACATTGCCAGAGAACG 59.256 45.455 0.00 0.00 0.00 3.95
3026 3162 3.119708 GGTGATTCACATTGCCAGAGAAC 60.120 47.826 18.09 0.00 35.86 3.01
3027 3163 3.084039 GGTGATTCACATTGCCAGAGAA 58.916 45.455 18.09 0.00 35.86 2.87
3028 3164 2.306805 AGGTGATTCACATTGCCAGAGA 59.693 45.455 18.09 0.00 35.86 3.10
3029 3165 2.422479 CAGGTGATTCACATTGCCAGAG 59.578 50.000 18.09 0.00 35.86 3.35
3030 3166 2.224843 ACAGGTGATTCACATTGCCAGA 60.225 45.455 18.09 0.00 35.86 3.86
3031 3167 2.165167 ACAGGTGATTCACATTGCCAG 58.835 47.619 18.09 2.06 35.86 4.85
3032 3168 2.291209 ACAGGTGATTCACATTGCCA 57.709 45.000 18.09 0.00 35.86 4.92
3033 3169 2.557924 TCAACAGGTGATTCACATTGCC 59.442 45.455 18.09 0.79 35.86 4.52
3034 3170 3.254166 AGTCAACAGGTGATTCACATTGC 59.746 43.478 18.09 13.29 38.90 3.56
3035 3171 5.391310 GCTAGTCAACAGGTGATTCACATTG 60.391 44.000 18.09 16.83 38.90 2.82
3036 3172 4.697352 GCTAGTCAACAGGTGATTCACATT 59.303 41.667 18.09 6.73 38.90 2.71
3037 3173 4.256920 GCTAGTCAACAGGTGATTCACAT 58.743 43.478 18.09 8.70 38.90 3.21
3038 3174 3.070878 TGCTAGTCAACAGGTGATTCACA 59.929 43.478 18.09 0.00 38.90 3.58
3039 3175 3.664107 TGCTAGTCAACAGGTGATTCAC 58.336 45.455 8.34 8.34 38.90 3.18
3040 3176 4.350368 TTGCTAGTCAACAGGTGATTCA 57.650 40.909 0.00 0.00 38.90 2.57
3041 3177 5.239525 AGTTTTGCTAGTCAACAGGTGATTC 59.760 40.000 0.00 0.00 38.90 2.52
3042 3178 5.133221 AGTTTTGCTAGTCAACAGGTGATT 58.867 37.500 0.00 0.00 38.90 2.57
3043 3179 4.718961 AGTTTTGCTAGTCAACAGGTGAT 58.281 39.130 0.00 0.00 38.90 3.06
3044 3180 4.150897 AGTTTTGCTAGTCAACAGGTGA 57.849 40.909 0.00 0.00 33.73 4.02
3045 3181 4.601019 CAAGTTTTGCTAGTCAACAGGTG 58.399 43.478 0.00 0.00 33.73 4.00
3046 3182 4.900635 CAAGTTTTGCTAGTCAACAGGT 57.099 40.909 0.00 0.00 33.73 4.00
3059 3195 2.549754 AGATCGTCACTGGCAAGTTTTG 59.450 45.455 0.00 0.00 32.98 2.44
3060 3196 2.851195 AGATCGTCACTGGCAAGTTTT 58.149 42.857 0.00 0.00 32.98 2.43
3061 3197 2.549754 CAAGATCGTCACTGGCAAGTTT 59.450 45.455 0.00 0.00 32.98 2.66
3062 3198 2.146342 CAAGATCGTCACTGGCAAGTT 58.854 47.619 0.00 0.00 32.98 2.66
3063 3199 1.070758 ACAAGATCGTCACTGGCAAGT 59.929 47.619 0.00 0.00 36.98 3.16
3064 3200 1.800805 ACAAGATCGTCACTGGCAAG 58.199 50.000 0.00 0.00 0.00 4.01
3065 3201 3.521560 GATACAAGATCGTCACTGGCAA 58.478 45.455 0.00 0.00 0.00 4.52
3066 3202 2.159099 GGATACAAGATCGTCACTGGCA 60.159 50.000 0.00 0.00 0.00 4.92
3067 3203 2.474816 GGATACAAGATCGTCACTGGC 58.525 52.381 0.00 0.00 0.00 4.85
3082 3218 6.989169 GCTACCTATGGATTGATCATGGATAC 59.011 42.308 0.00 0.00 0.00 2.24
3083 3219 6.905215 AGCTACCTATGGATTGATCATGGATA 59.095 38.462 0.00 0.00 0.00 2.59
3084 3220 5.730207 AGCTACCTATGGATTGATCATGGAT 59.270 40.000 0.00 0.00 0.00 3.41
3085 3221 5.046087 CAGCTACCTATGGATTGATCATGGA 60.046 44.000 0.00 0.00 0.00 3.41
3086 3222 5.046087 TCAGCTACCTATGGATTGATCATGG 60.046 44.000 0.00 0.00 0.00 3.66
3087 3223 5.873712 GTCAGCTACCTATGGATTGATCATG 59.126 44.000 0.00 0.00 0.00 3.07
3088 3224 5.046014 GGTCAGCTACCTATGGATTGATCAT 60.046 44.000 0.00 0.00 45.75 2.45
3089 3225 4.284490 GGTCAGCTACCTATGGATTGATCA 59.716 45.833 0.00 0.00 45.75 2.92
3090 3226 4.826556 GGTCAGCTACCTATGGATTGATC 58.173 47.826 5.42 0.00 45.75 2.92
3091 3227 4.899352 GGTCAGCTACCTATGGATTGAT 57.101 45.455 5.42 0.00 45.75 2.57
3102 3238 1.218316 CCAGAACCGGTCAGCTACC 59.782 63.158 8.04 0.00 45.77 3.18
3103 3239 1.448013 GCCAGAACCGGTCAGCTAC 60.448 63.158 8.04 0.00 0.00 3.58
3104 3240 2.656069 GGCCAGAACCGGTCAGCTA 61.656 63.158 8.04 0.00 0.00 3.32
3105 3241 4.021925 GGCCAGAACCGGTCAGCT 62.022 66.667 8.04 2.62 0.00 4.24
3106 3242 4.329545 TGGCCAGAACCGGTCAGC 62.330 66.667 8.04 8.67 35.14 4.26
3107 3243 2.358737 GTGGCCAGAACCGGTCAG 60.359 66.667 8.04 0.00 42.62 3.51
3108 3244 3.948719 GGTGGCCAGAACCGGTCA 61.949 66.667 8.04 0.00 38.69 4.02
3109 3245 3.192103 AAGGTGGCCAGAACCGGTC 62.192 63.158 8.04 0.95 42.89 4.79
3110 3246 3.175710 AAGGTGGCCAGAACCGGT 61.176 61.111 5.11 0.00 42.89 5.28
3111 3247 2.359975 GAAGGTGGCCAGAACCGG 60.360 66.667 5.11 0.00 42.89 5.28
3112 3248 0.537371 AAAGAAGGTGGCCAGAACCG 60.537 55.000 5.11 0.00 42.89 4.44
3113 3249 0.961753 CAAAGAAGGTGGCCAGAACC 59.038 55.000 5.11 3.56 38.03 3.62
3114 3250 1.882623 CTCAAAGAAGGTGGCCAGAAC 59.117 52.381 5.11 0.00 0.00 3.01
3115 3251 1.774254 TCTCAAAGAAGGTGGCCAGAA 59.226 47.619 5.11 0.00 0.00 3.02
3116 3252 1.434188 TCTCAAAGAAGGTGGCCAGA 58.566 50.000 5.11 0.00 0.00 3.86
3117 3253 2.290514 TGATCTCAAAGAAGGTGGCCAG 60.291 50.000 5.11 0.00 0.00 4.85
3118 3254 1.704628 TGATCTCAAAGAAGGTGGCCA 59.295 47.619 0.00 0.00 0.00 5.36
3119 3255 2.496899 TGATCTCAAAGAAGGTGGCC 57.503 50.000 0.00 0.00 0.00 5.36
3120 3256 3.614092 TGATGATCTCAAAGAAGGTGGC 58.386 45.455 0.00 0.00 0.00 5.01
3121 3257 3.626670 GCTGATGATCTCAAAGAAGGTGG 59.373 47.826 0.00 0.00 32.14 4.61
3122 3258 4.515361 AGCTGATGATCTCAAAGAAGGTG 58.485 43.478 0.00 0.00 32.14 4.00
3123 3259 4.840716 AGCTGATGATCTCAAAGAAGGT 57.159 40.909 0.00 0.00 32.14 3.50
3124 3260 6.990939 TCATTAGCTGATGATCTCAAAGAAGG 59.009 38.462 16.64 0.00 32.14 3.46
3125 3261 8.610248 ATCATTAGCTGATGATCTCAAAGAAG 57.390 34.615 24.23 0.00 41.69 2.85
3126 3262 8.975663 AATCATTAGCTGATGATCTCAAAGAA 57.024 30.769 28.32 3.45 44.03 2.52
3127 3263 8.837389 CAAATCATTAGCTGATGATCTCAAAGA 58.163 33.333 28.32 4.13 44.03 2.52
3128 3264 7.591795 GCAAATCATTAGCTGATGATCTCAAAG 59.408 37.037 28.32 17.15 44.03 2.77
3129 3265 7.067737 TGCAAATCATTAGCTGATGATCTCAAA 59.932 33.333 28.32 14.20 44.03 2.69
3130 3266 6.544564 TGCAAATCATTAGCTGATGATCTCAA 59.455 34.615 28.32 15.34 44.03 3.02
3131 3267 6.059484 TGCAAATCATTAGCTGATGATCTCA 58.941 36.000 28.32 22.41 44.03 3.27
3132 3268 6.205076 ACTGCAAATCATTAGCTGATGATCTC 59.795 38.462 28.32 20.67 44.03 2.75
3133 3269 6.062749 ACTGCAAATCATTAGCTGATGATCT 58.937 36.000 28.32 16.48 44.03 2.75
3134 3270 6.205076 AGACTGCAAATCATTAGCTGATGATC 59.795 38.462 28.32 18.75 44.03 2.92
3135 3271 6.017026 CAGACTGCAAATCATTAGCTGATGAT 60.017 38.462 24.23 24.23 44.03 2.45
3136 3272 5.296035 CAGACTGCAAATCATTAGCTGATGA 59.704 40.000 21.97 21.97 44.03 2.92
3137 3273 5.511571 CAGACTGCAAATCATTAGCTGATG 58.488 41.667 12.14 12.14 44.03 3.07
3138 3274 4.036498 GCAGACTGCAAATCATTAGCTGAT 59.964 41.667 22.62 0.00 44.14 2.90
3139 3275 3.376234 GCAGACTGCAAATCATTAGCTGA 59.624 43.478 22.62 0.00 44.26 4.26
3140 3276 3.692576 GCAGACTGCAAATCATTAGCTG 58.307 45.455 22.62 0.00 44.26 4.24
3152 3288 3.867880 CCTGGTGGAAAGCAGACTGCA 62.868 57.143 28.43 5.21 40.15 4.41
3153 3289 1.239968 CCTGGTGGAAAGCAGACTGC 61.240 60.000 20.12 20.12 38.65 4.40
3154 3290 1.239968 GCCTGGTGGAAAGCAGACTG 61.240 60.000 6.50 0.00 34.57 3.51
3155 3291 1.073897 GCCTGGTGGAAAGCAGACT 59.926 57.895 6.50 0.00 34.57 3.24
3156 3292 0.324943 TAGCCTGGTGGAAAGCAGAC 59.675 55.000 6.50 0.00 34.57 3.51
3157 3293 1.065199 CATAGCCTGGTGGAAAGCAGA 60.065 52.381 6.50 0.00 34.57 4.26
3158 3294 1.386533 CATAGCCTGGTGGAAAGCAG 58.613 55.000 0.00 0.00 34.57 4.24
3159 3295 0.680921 GCATAGCCTGGTGGAAAGCA 60.681 55.000 0.00 0.00 34.57 3.91
3160 3296 1.387295 GGCATAGCCTGGTGGAAAGC 61.387 60.000 0.00 0.00 46.69 3.51
3161 3297 2.799176 GGCATAGCCTGGTGGAAAG 58.201 57.895 0.00 0.00 46.69 2.62
3172 3308 4.023450 GGGAATAGTTTTAACGGGCATAGC 60.023 45.833 0.00 0.00 0.00 2.97
3173 3309 5.374071 AGGGAATAGTTTTAACGGGCATAG 58.626 41.667 0.00 0.00 0.00 2.23
3174 3310 5.370679 GAGGGAATAGTTTTAACGGGCATA 58.629 41.667 0.00 0.00 0.00 3.14
3175 3311 4.204799 GAGGGAATAGTTTTAACGGGCAT 58.795 43.478 0.00 0.00 0.00 4.40
3176 3312 3.613030 GAGGGAATAGTTTTAACGGGCA 58.387 45.455 0.00 0.00 0.00 5.36
3177 3313 2.947652 GGAGGGAATAGTTTTAACGGGC 59.052 50.000 0.00 0.00 0.00 6.13
3178 3314 3.200483 CGGAGGGAATAGTTTTAACGGG 58.800 50.000 0.00 0.00 0.00 5.28
3179 3315 3.865446 ACGGAGGGAATAGTTTTAACGG 58.135 45.455 0.00 0.00 0.00 4.44
3180 3316 4.032104 CGAACGGAGGGAATAGTTTTAACG 59.968 45.833 0.00 0.00 0.00 3.18
3181 3317 4.330894 CCGAACGGAGGGAATAGTTTTAAC 59.669 45.833 7.53 0.00 37.50 2.01
3182 3318 4.222588 TCCGAACGGAGGGAATAGTTTTAA 59.777 41.667 12.04 0.00 39.76 1.52
3183 3319 3.768757 TCCGAACGGAGGGAATAGTTTTA 59.231 43.478 12.04 0.00 39.76 1.52
3184 3320 2.568509 TCCGAACGGAGGGAATAGTTTT 59.431 45.455 12.04 0.00 39.76 2.43
3185 3321 2.181975 TCCGAACGGAGGGAATAGTTT 58.818 47.619 12.04 0.00 39.76 2.66
3186 3322 1.856629 TCCGAACGGAGGGAATAGTT 58.143 50.000 12.04 0.00 39.76 2.24
3187 3323 1.856629 TTCCGAACGGAGGGAATAGT 58.143 50.000 15.34 0.00 46.06 2.12
3191 3327 2.181975 AGTAATTCCGAACGGAGGGAA 58.818 47.619 15.34 5.91 46.06 3.97
3192 3328 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3193 3329 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3194 3330 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3195 3331 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3196 3332 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3197 3333 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3198 3334 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3199 3335 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
3200 3336 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
3201 3337 3.250744 CTTCTGCGACAAGTAATTCCGA 58.749 45.455 0.00 0.00 0.00 4.55
3202 3338 2.993899 ACTTCTGCGACAAGTAATTCCG 59.006 45.455 0.00 0.00 32.08 4.30
3203 3339 3.125316 CCACTTCTGCGACAAGTAATTCC 59.875 47.826 0.00 0.00 32.61 3.01
3204 3340 3.994392 TCCACTTCTGCGACAAGTAATTC 59.006 43.478 0.00 0.00 32.61 2.17
3205 3341 4.002906 TCCACTTCTGCGACAAGTAATT 57.997 40.909 0.00 0.00 32.61 1.40
3206 3342 3.678056 TCCACTTCTGCGACAAGTAAT 57.322 42.857 0.00 0.00 32.61 1.89
3207 3343 3.244078 ACATCCACTTCTGCGACAAGTAA 60.244 43.478 0.00 0.00 32.61 2.24
3208 3344 2.299013 ACATCCACTTCTGCGACAAGTA 59.701 45.455 0.00 0.00 32.61 2.24
3209 3345 1.070758 ACATCCACTTCTGCGACAAGT 59.929 47.619 0.00 0.00 34.24 3.16
3210 3346 1.800805 ACATCCACTTCTGCGACAAG 58.199 50.000 0.00 0.00 0.00 3.16
3211 3347 3.195610 AGATACATCCACTTCTGCGACAA 59.804 43.478 0.00 0.00 0.00 3.18
3212 3348 2.760650 AGATACATCCACTTCTGCGACA 59.239 45.455 0.00 0.00 0.00 4.35
3213 3349 3.444703 AGATACATCCACTTCTGCGAC 57.555 47.619 0.00 0.00 0.00 5.19
3214 3350 4.276183 GTCTAGATACATCCACTTCTGCGA 59.724 45.833 0.00 0.00 0.00 5.10
3215 3351 4.036852 TGTCTAGATACATCCACTTCTGCG 59.963 45.833 0.00 0.00 0.00 5.18
3216 3352 5.521906 TGTCTAGATACATCCACTTCTGC 57.478 43.478 0.00 0.00 0.00 4.26
3234 3370 9.561069 GGATGTATGTGGAACTAAAATATGTCT 57.439 33.333 0.00 0.00 38.04 3.41
3235 3371 9.337396 TGGATGTATGTGGAACTAAAATATGTC 57.663 33.333 0.00 0.00 38.04 3.06
3236 3372 9.866655 ATGGATGTATGTGGAACTAAAATATGT 57.133 29.630 0.00 0.00 38.04 2.29
3240 3376 8.695456 GGAAATGGATGTATGTGGAACTAAAAT 58.305 33.333 0.00 0.00 38.04 1.82
3241 3377 7.148154 CGGAAATGGATGTATGTGGAACTAAAA 60.148 37.037 0.00 0.00 38.04 1.52
3242 3378 6.317642 CGGAAATGGATGTATGTGGAACTAAA 59.682 38.462 0.00 0.00 38.04 1.85
3243 3379 5.820423 CGGAAATGGATGTATGTGGAACTAA 59.180 40.000 0.00 0.00 38.04 2.24
3244 3380 5.129650 TCGGAAATGGATGTATGTGGAACTA 59.870 40.000 0.00 0.00 38.04 2.24
3245 3381 4.080582 TCGGAAATGGATGTATGTGGAACT 60.081 41.667 0.00 0.00 38.04 3.01
3246 3382 4.196193 TCGGAAATGGATGTATGTGGAAC 58.804 43.478 0.00 0.00 37.35 3.62
3247 3383 4.163268 TCTCGGAAATGGATGTATGTGGAA 59.837 41.667 0.00 0.00 0.00 3.53
3248 3384 3.709141 TCTCGGAAATGGATGTATGTGGA 59.291 43.478 0.00 0.00 0.00 4.02
3249 3385 3.809832 GTCTCGGAAATGGATGTATGTGG 59.190 47.826 0.00 0.00 0.00 4.17
3250 3386 4.441792 TGTCTCGGAAATGGATGTATGTG 58.558 43.478 0.00 0.00 0.00 3.21
3251 3387 4.753516 TGTCTCGGAAATGGATGTATGT 57.246 40.909 0.00 0.00 0.00 2.29
3252 3388 6.624352 ATTTGTCTCGGAAATGGATGTATG 57.376 37.500 0.00 0.00 0.00 2.39
3253 3389 8.924511 ATTATTTGTCTCGGAAATGGATGTAT 57.075 30.769 0.00 0.00 0.00 2.29
3254 3390 8.746052 AATTATTTGTCTCGGAAATGGATGTA 57.254 30.769 0.00 0.00 0.00 2.29
3255 3391 7.201821 GGAATTATTTGTCTCGGAAATGGATGT 60.202 37.037 0.00 0.00 0.00 3.06
3256 3392 7.141363 GGAATTATTTGTCTCGGAAATGGATG 58.859 38.462 0.00 0.00 0.00 3.51
3257 3393 6.017109 CGGAATTATTTGTCTCGGAAATGGAT 60.017 38.462 0.00 0.00 0.00 3.41
3258 3394 5.295787 CGGAATTATTTGTCTCGGAAATGGA 59.704 40.000 0.00 0.00 0.00 3.41
3259 3395 5.295787 TCGGAATTATTTGTCTCGGAAATGG 59.704 40.000 0.00 0.00 0.00 3.16
3260 3396 6.358118 TCGGAATTATTTGTCTCGGAAATG 57.642 37.500 0.00 0.00 0.00 2.32
3261 3397 6.456449 CGTTCGGAATTATTTGTCTCGGAAAT 60.456 38.462 0.00 0.00 31.52 2.17
3262 3398 5.163933 CGTTCGGAATTATTTGTCTCGGAAA 60.164 40.000 0.00 0.00 31.52 3.13
3263 3399 4.327898 CGTTCGGAATTATTTGTCTCGGAA 59.672 41.667 0.00 0.00 0.00 4.30
3264 3400 3.861113 CGTTCGGAATTATTTGTCTCGGA 59.139 43.478 0.00 0.00 0.00 4.55
3265 3401 3.000925 CCGTTCGGAATTATTTGTCTCGG 59.999 47.826 5.19 0.00 0.00 4.63
3266 3402 3.861113 TCCGTTCGGAATTATTTGTCTCG 59.139 43.478 11.66 0.00 0.00 4.04
3267 3403 4.270325 CCTCCGTTCGGAATTATTTGTCTC 59.730 45.833 14.79 0.00 33.41 3.36
3268 3404 4.189231 CCTCCGTTCGGAATTATTTGTCT 58.811 43.478 14.79 0.00 33.41 3.41
3269 3405 3.311596 CCCTCCGTTCGGAATTATTTGTC 59.688 47.826 14.79 0.00 33.41 3.18
3270 3406 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
3271 3407 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
3272 3408 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
3273 3409 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
3274 3410 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
3275 3411 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3276 3412 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3277 3413 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
3278 3414 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
3279 3415 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
3280 3416 0.669077 CATCTACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
3281 3417 0.030908 GCATCTACTCCCTCCGTTCG 59.969 60.000 0.00 0.00 0.00 3.95
3282 3418 0.389757 GGCATCTACTCCCTCCGTTC 59.610 60.000 0.00 0.00 0.00 3.95
3283 3419 0.325296 TGGCATCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
3284 3420 0.325296 TTGGCATCTACTCCCTCCGT 60.325 55.000 0.00 0.00 0.00 4.69
3285 3421 0.830648 TTTGGCATCTACTCCCTCCG 59.169 55.000 0.00 0.00 0.00 4.63
3286 3422 1.475930 GCTTTGGCATCTACTCCCTCC 60.476 57.143 0.00 0.00 38.54 4.30
3287 3423 1.210478 TGCTTTGGCATCTACTCCCTC 59.790 52.381 0.00 0.00 44.28 4.30
3288 3424 1.289160 TGCTTTGGCATCTACTCCCT 58.711 50.000 0.00 0.00 44.28 4.20
3289 3425 3.882131 TGCTTTGGCATCTACTCCC 57.118 52.632 0.00 0.00 44.28 4.30
3299 3435 0.321830 ATGGGTTTGCATGCTTTGGC 60.322 50.000 20.33 4.63 39.26 4.52
3300 3436 1.002201 TGATGGGTTTGCATGCTTTGG 59.998 47.619 20.33 0.00 0.00 3.28
3301 3437 2.459060 TGATGGGTTTGCATGCTTTG 57.541 45.000 20.33 0.00 0.00 2.77
3302 3438 2.104451 TGTTGATGGGTTTGCATGCTTT 59.896 40.909 20.33 0.00 0.00 3.51
3303 3439 1.693062 TGTTGATGGGTTTGCATGCTT 59.307 42.857 20.33 0.00 0.00 3.91
3304 3440 1.340088 TGTTGATGGGTTTGCATGCT 58.660 45.000 20.33 0.00 0.00 3.79
3305 3441 2.070783 CTTGTTGATGGGTTTGCATGC 58.929 47.619 11.82 11.82 0.00 4.06
3306 3442 2.037511 ACCTTGTTGATGGGTTTGCATG 59.962 45.455 0.00 0.00 0.00 4.06
3307 3443 2.299867 GACCTTGTTGATGGGTTTGCAT 59.700 45.455 0.00 0.00 33.01 3.96
3308 3444 1.686052 GACCTTGTTGATGGGTTTGCA 59.314 47.619 0.00 0.00 33.01 4.08
3309 3445 1.963515 AGACCTTGTTGATGGGTTTGC 59.036 47.619 0.00 0.00 33.01 3.68
3310 3446 2.958355 ACAGACCTTGTTGATGGGTTTG 59.042 45.455 0.00 0.00 39.92 2.93
3311 3447 3.222603 GACAGACCTTGTTGATGGGTTT 58.777 45.455 0.00 0.00 41.05 3.27
3312 3448 2.489073 GGACAGACCTTGTTGATGGGTT 60.489 50.000 0.00 0.00 41.05 4.11
3313 3449 1.073923 GGACAGACCTTGTTGATGGGT 59.926 52.381 0.00 0.00 41.05 4.51
3314 3450 1.614317 GGGACAGACCTTGTTGATGGG 60.614 57.143 0.00 0.00 41.05 4.00
3315 3451 1.352352 AGGGACAGACCTTGTTGATGG 59.648 52.381 0.00 0.00 41.05 3.51
3316 3452 2.038952 TGAGGGACAGACCTTGTTGATG 59.961 50.000 0.00 0.00 42.10 3.07
3317 3453 2.338809 TGAGGGACAGACCTTGTTGAT 58.661 47.619 0.00 0.00 42.10 2.57
3318 3454 1.801242 TGAGGGACAGACCTTGTTGA 58.199 50.000 0.00 0.00 42.10 3.18
3328 3464 1.329171 CTCAGGAGGCTGAGGGACAG 61.329 65.000 0.00 0.00 45.11 3.51
3329 3465 1.305633 CTCAGGAGGCTGAGGGACA 60.306 63.158 0.00 0.00 45.11 4.02
3330 3466 3.627690 CTCAGGAGGCTGAGGGAC 58.372 66.667 0.00 0.00 45.11 4.46
3335 3471 0.694771 AATTGTGCTCAGGAGGCTGA 59.305 50.000 0.00 0.00 0.00 4.26
3336 3472 1.201647 CAAATTGTGCTCAGGAGGCTG 59.798 52.381 0.00 0.00 0.00 4.85
3337 3473 1.542492 CAAATTGTGCTCAGGAGGCT 58.458 50.000 0.00 0.00 0.00 4.58
3348 3484 0.174162 GCTAGGCCCTGCAAATTGTG 59.826 55.000 12.10 0.00 0.00 3.33
3349 3485 0.040204 AGCTAGGCCCTGCAAATTGT 59.960 50.000 18.12 0.00 0.00 2.71
3350 3486 1.952296 CTAGCTAGGCCCTGCAAATTG 59.048 52.381 13.32 0.00 0.00 2.32
3351 3487 1.752084 GCTAGCTAGGCCCTGCAAATT 60.752 52.381 22.10 2.02 0.00 1.82
3352 3488 0.179006 GCTAGCTAGGCCCTGCAAAT 60.179 55.000 22.10 2.34 0.00 2.32
3353 3489 1.224592 GCTAGCTAGGCCCTGCAAA 59.775 57.895 22.10 6.44 0.00 3.68
3354 3490 1.274703 AAGCTAGCTAGGCCCTGCAA 61.275 55.000 19.70 0.00 0.00 4.08
3355 3491 1.690219 GAAGCTAGCTAGGCCCTGCA 61.690 60.000 19.70 5.28 0.00 4.41
3356 3492 1.070615 GAAGCTAGCTAGGCCCTGC 59.929 63.158 19.70 9.32 0.00 4.85
3357 3493 0.762461 AGGAAGCTAGCTAGGCCCTG 60.762 60.000 19.70 0.00 0.00 4.45
3358 3494 0.762461 CAGGAAGCTAGCTAGGCCCT 60.762 60.000 19.70 18.12 0.00 5.19
3359 3495 1.751563 CAGGAAGCTAGCTAGGCCC 59.248 63.158 19.70 16.21 0.00 5.80
3360 3496 1.070615 GCAGGAAGCTAGCTAGGCC 59.929 63.158 19.70 19.01 41.15 5.19
3361 3497 1.070615 GGCAGGAAGCTAGCTAGGC 59.929 63.158 19.70 17.92 44.79 3.93
3362 3498 1.050988 TGGGCAGGAAGCTAGCTAGG 61.051 60.000 19.70 8.97 44.79 3.02
3363 3499 1.001860 GATGGGCAGGAAGCTAGCTAG 59.998 57.143 19.70 16.84 44.79 3.42
3364 3500 1.051812 GATGGGCAGGAAGCTAGCTA 58.948 55.000 19.70 0.00 44.79 3.32
3365 3501 1.835693 GATGGGCAGGAAGCTAGCT 59.164 57.895 12.68 12.68 44.79 3.32
3366 3502 1.596477 CGATGGGCAGGAAGCTAGC 60.596 63.158 6.62 6.62 44.79 3.42
3367 3503 0.249657 GTCGATGGGCAGGAAGCTAG 60.250 60.000 0.00 0.00 44.79 3.42
3368 3504 0.975556 TGTCGATGGGCAGGAAGCTA 60.976 55.000 0.00 0.00 44.79 3.32
3369 3505 1.841302 TTGTCGATGGGCAGGAAGCT 61.841 55.000 0.00 0.00 44.79 3.74
3370 3506 1.372087 CTTGTCGATGGGCAGGAAGC 61.372 60.000 0.00 0.00 44.65 3.86
3371 3507 0.036010 ACTTGTCGATGGGCAGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
3372 3508 1.207089 CTACTTGTCGATGGGCAGGAA 59.793 52.381 0.00 0.00 0.00 3.36
3373 3509 0.824109 CTACTTGTCGATGGGCAGGA 59.176 55.000 0.00 0.00 0.00 3.86
3374 3510 0.824109 TCTACTTGTCGATGGGCAGG 59.176 55.000 0.00 0.00 0.00 4.85
3375 3511 1.799181 CGTCTACTTGTCGATGGGCAG 60.799 57.143 0.00 0.00 0.00 4.85
3376 3512 0.172578 CGTCTACTTGTCGATGGGCA 59.827 55.000 0.00 0.00 0.00 5.36
3377 3513 0.172803 ACGTCTACTTGTCGATGGGC 59.827 55.000 0.00 0.00 0.00 5.36
3378 3514 1.909376 CACGTCTACTTGTCGATGGG 58.091 55.000 0.00 0.00 0.00 4.00
3379 3515 1.269166 GCACGTCTACTTGTCGATGG 58.731 55.000 0.00 0.00 0.00 3.51
3380 3516 1.269166 GGCACGTCTACTTGTCGATG 58.731 55.000 0.00 0.00 0.00 3.84
3381 3517 0.172803 GGGCACGTCTACTTGTCGAT 59.827 55.000 0.00 0.00 0.00 3.59
3382 3518 0.892358 AGGGCACGTCTACTTGTCGA 60.892 55.000 0.00 0.00 0.00 4.20
3383 3519 0.038526 AAGGGCACGTCTACTTGTCG 60.039 55.000 0.00 0.00 0.00 4.35
3384 3520 2.067013 GAAAGGGCACGTCTACTTGTC 58.933 52.381 0.00 0.00 0.00 3.18
3385 3521 1.692519 AGAAAGGGCACGTCTACTTGT 59.307 47.619 0.00 0.00 0.00 3.16
3386 3522 2.069273 CAGAAAGGGCACGTCTACTTG 58.931 52.381 0.00 0.00 0.00 3.16
3387 3523 1.968493 TCAGAAAGGGCACGTCTACTT 59.032 47.619 0.00 0.00 0.00 2.24
3388 3524 1.629043 TCAGAAAGGGCACGTCTACT 58.371 50.000 0.00 0.00 0.00 2.57
3389 3525 2.541556 GATCAGAAAGGGCACGTCTAC 58.458 52.381 0.00 0.00 0.00 2.59
3390 3526 1.480954 GGATCAGAAAGGGCACGTCTA 59.519 52.381 0.00 0.00 0.00 2.59
3391 3527 0.250513 GGATCAGAAAGGGCACGTCT 59.749 55.000 0.00 0.00 0.00 4.18
3392 3528 0.744771 GGGATCAGAAAGGGCACGTC 60.745 60.000 0.00 0.00 0.00 4.34
3393 3529 1.299976 GGGATCAGAAAGGGCACGT 59.700 57.895 0.00 0.00 0.00 4.49
3394 3530 1.815421 CGGGATCAGAAAGGGCACG 60.815 63.158 0.00 0.00 0.00 5.34
3395 3531 1.026718 CACGGGATCAGAAAGGGCAC 61.027 60.000 0.00 0.00 0.00 5.01
3396 3532 1.299648 CACGGGATCAGAAAGGGCA 59.700 57.895 0.00 0.00 0.00 5.36
3397 3533 2.115291 GCACGGGATCAGAAAGGGC 61.115 63.158 0.00 0.00 0.00 5.19
3398 3534 4.225497 GCACGGGATCAGAAAGGG 57.775 61.111 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.