Multiple sequence alignment - TraesCS4A01G366800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G366800 chr4A 100.000 3137 0 0 1 3137 640051809 640048673 0.000000e+00 5794.0
1 TraesCS4A01G366800 chr4A 88.927 587 48 11 2361 2934 625835165 625835747 0.000000e+00 708.0
2 TraesCS4A01G366800 chr4A 98.558 208 2 1 2930 3137 640044087 640043881 1.780000e-97 366.0
3 TraesCS4A01G366800 chr4A 80.220 91 16 2 512 601 584073245 584073156 2.020000e-07 67.6
4 TraesCS4A01G366800 chr5B 90.277 1409 72 25 885 2262 671349183 671350557 0.000000e+00 1783.0
5 TraesCS4A01G366800 chr5B 88.603 272 27 1 240 511 671347148 671347415 8.390000e-86 327.0
6 TraesCS4A01G366800 chr5B 91.954 87 4 2 780 864 671349113 671349198 5.500000e-23 119.0
7 TraesCS4A01G366800 chr5B 87.234 94 6 1 670 763 671347453 671347540 5.540000e-18 102.0
8 TraesCS4A01G366800 chr5B 97.959 49 1 0 607 655 671347421 671347469 5.570000e-13 86.1
9 TraesCS4A01G366800 chr7A 86.770 582 42 17 2358 2934 694058555 694058004 1.600000e-172 616.0
10 TraesCS4A01G366800 chr7A 99.038 208 1 1 2930 3137 719320512 719320718 3.820000e-99 372.0
11 TraesCS4A01G366800 chr7A 99.034 207 1 1 2931 3137 719315398 719315603 1.370000e-98 370.0
12 TraesCS4A01G366800 chr7A 87.273 55 6 1 2291 2345 492819707 492819760 9.390000e-06 62.1
13 TraesCS4A01G366800 chr2B 85.962 577 48 13 2360 2934 519376772 519377317 1.250000e-163 586.0
14 TraesCS4A01G366800 chr2B 86.667 60 6 2 543 601 47637367 47637309 7.260000e-07 65.8
15 TraesCS4A01G366800 chr6D 88.859 377 38 4 2560 2934 144562409 144562035 7.930000e-126 460.0
16 TraesCS4A01G366800 chr6D 82.394 284 38 10 2601 2882 422083348 422083621 1.450000e-58 237.0
17 TraesCS4A01G366800 chr4D 88.594 377 39 4 2560 2934 39596111 39596485 3.690000e-124 455.0
18 TraesCS4A01G366800 chr2A 88.800 375 35 5 2565 2934 53921927 53921555 1.330000e-123 453.0
19 TraesCS4A01G366800 chr2A 77.679 224 45 4 284 504 777045034 777044813 7.060000e-27 132.0
20 TraesCS4A01G366800 chr2A 77.155 232 49 3 276 504 777048511 777048281 7.060000e-27 132.0
21 TraesCS4A01G366800 chr2A 86.441 59 8 0 543 601 715223355 715223297 7.260000e-07 65.8
22 TraesCS4A01G366800 chr2A 79.167 96 17 3 510 604 769662211 769662118 2.610000e-06 63.9
23 TraesCS4A01G366800 chr5A 87.798 377 42 4 2560 2934 465791433 465791059 3.710000e-119 438.0
24 TraesCS4A01G366800 chr5A 79.039 229 41 5 284 506 44969905 44969678 1.950000e-32 150.0
25 TraesCS4A01G366800 chr6A 87.936 373 41 4 2560 2928 340193869 340193497 1.340000e-118 436.0
26 TraesCS4A01G366800 chr6A 98.551 207 2 1 2931 3137 453639170 453639375 6.390000e-97 364.0
27 TraesCS4A01G366800 chr6A 84.746 59 7 2 514 571 312082554 312082611 1.220000e-04 58.4
28 TraesCS4A01G366800 chr1B 98.585 212 2 1 2926 3137 676122949 676123159 1.060000e-99 374.0
29 TraesCS4A01G366800 chr1B 99.038 208 1 1 2930 3137 676145697 676145903 3.820000e-99 372.0
30 TraesCS4A01G366800 chr1B 99.034 207 1 1 2931 3137 504177157 504176952 1.370000e-98 370.0
31 TraesCS4A01G366800 chr1B 98.558 208 2 1 2930 3137 504172360 504172154 1.780000e-97 366.0
32 TraesCS4A01G366800 chr1B 98.558 208 2 1 2930 3137 676140457 676140663 1.780000e-97 366.0
33 TraesCS4A01G366800 chr1B 85.714 63 8 1 538 600 141111640 141111579 7.260000e-07 65.8
34 TraesCS4A01G366800 chr3D 78.236 533 77 23 9 509 153508897 153509422 3.930000e-79 305.0
35 TraesCS4A01G366800 chr3B 81.088 386 61 8 1685 2062 779581606 779581225 6.580000e-77 298.0
36 TraesCS4A01G366800 chr3B 77.524 525 80 23 9 502 225176055 225176572 6.620000e-72 281.0
37 TraesCS4A01G366800 chr2D 84.644 267 29 6 240 502 415549019 415549277 4.010000e-64 255.0
38 TraesCS4A01G366800 chr2D 78.652 267 52 3 242 504 602669390 602669655 4.160000e-39 172.0
39 TraesCS4A01G366800 chr6B 78.606 416 63 9 1689 2079 610261250 610260836 5.190000e-63 252.0
40 TraesCS4A01G366800 chr7D 88.235 136 14 1 1 134 630682040 630682175 9.000000e-36 161.0
41 TraesCS4A01G366800 chr7D 90.476 63 5 1 543 604 637887985 637887923 7.210000e-12 82.4
42 TraesCS4A01G366800 chr7D 80.435 92 15 3 515 604 424092352 424092262 2.020000e-07 67.6
43 TraesCS4A01G366800 chr5D 77.358 265 49 6 251 508 506205089 506204829 2.520000e-31 147.0
44 TraesCS4A01G366800 chr5D 89.831 59 4 2 2288 2345 338381852 338381795 1.210000e-09 75.0
45 TraesCS4A01G366800 chr5D 87.719 57 7 0 544 600 222510222 222510166 2.020000e-07 67.6
46 TraesCS4A01G366800 chr1D 81.111 90 15 2 515 603 193504119 193504031 1.560000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G366800 chr4A 640048673 640051809 3136 True 5794.00 5794 100.0000 1 3137 1 chr4A.!!$R3 3136
1 TraesCS4A01G366800 chr4A 625835165 625835747 582 False 708.00 708 88.9270 2361 2934 1 chr4A.!!$F1 573
2 TraesCS4A01G366800 chr5B 671347148 671350557 3409 False 483.42 1783 91.2054 240 2262 5 chr5B.!!$F1 2022
3 TraesCS4A01G366800 chr7A 694058004 694058555 551 True 616.00 616 86.7700 2358 2934 1 chr7A.!!$R1 576
4 TraesCS4A01G366800 chr2B 519376772 519377317 545 False 586.00 586 85.9620 2360 2934 1 chr2B.!!$F1 574
5 TraesCS4A01G366800 chr3D 153508897 153509422 525 False 305.00 305 78.2360 9 509 1 chr3D.!!$F1 500
6 TraesCS4A01G366800 chr3B 225176055 225176572 517 False 281.00 281 77.5240 9 502 1 chr3B.!!$F1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 2450 0.036732 TCCCACCTGCAGTGTGATTC 59.963 55.0 27.05 0.0 45.74 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 3754 0.179056 AAGAACCACCACACGGTCAG 60.179 55.0 0.0 0.0 44.71 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.795144 TTATCCGAGGTCTTGTTACCATTA 57.205 37.500 0.00 0.00 42.40 1.90
34 37 7.151976 AGGTCTTGTTACCATTATTTTTGCAC 58.848 34.615 0.00 0.00 42.40 4.57
37 40 7.439655 GTCTTGTTACCATTATTTTTGCACCAA 59.560 33.333 0.00 0.00 0.00 3.67
41 44 8.153550 TGTTACCATTATTTTTGCACCAAAGAT 58.846 29.630 0.00 0.47 34.72 2.40
44 47 6.875195 ACCATTATTTTTGCACCAAAGATCTG 59.125 34.615 0.00 0.00 34.72 2.90
55 58 3.905784 CCAAAGATCTGGTTGCAGAAAC 58.094 45.455 0.00 0.00 38.12 2.78
68 71 3.575630 TGCAGAAACTCGTTGTAGCTAG 58.424 45.455 0.00 0.00 0.00 3.42
88 91 4.077188 GCAAGCAGCGACCACGTC 62.077 66.667 0.00 0.00 41.98 4.34
103 106 2.868196 GTCGCCCGAAAGAAAGGC 59.132 61.111 0.00 0.00 43.53 4.35
104 107 2.359478 TCGCCCGAAAGAAAGGCC 60.359 61.111 0.00 0.00 44.13 5.19
106 109 3.440415 GCCCGAAAGAAAGGCCGG 61.440 66.667 0.00 0.00 41.00 6.13
109 112 1.302192 CCGAAAGAAAGGCCGGTGA 60.302 57.895 1.90 0.00 37.40 4.02
148 151 2.358737 CGGGAAACGCAGCTCCTT 60.359 61.111 0.00 0.00 33.73 3.36
177 180 3.637273 GGACACCGGTGCTCCCTT 61.637 66.667 34.26 14.16 31.82 3.95
183 186 3.636231 CGGTGCTCCCTTGGGACA 61.636 66.667 3.91 5.69 0.00 4.02
184 187 2.971598 CGGTGCTCCCTTGGGACAT 61.972 63.158 3.91 0.00 39.30 3.06
186 189 1.450312 GTGCTCCCTTGGGACATCG 60.450 63.158 3.91 0.00 39.30 3.84
196 199 1.596477 GGGACATCGGATGCAGCTC 60.596 63.158 17.61 7.71 0.00 4.09
203 206 1.153765 CGGATGCAGCTCGAGTTCA 60.154 57.895 15.13 9.83 0.00 3.18
205 208 0.809241 GGATGCAGCTCGAGTTCAGG 60.809 60.000 15.13 0.00 0.00 3.86
206 209 0.108424 GATGCAGCTCGAGTTCAGGT 60.108 55.000 15.13 0.00 0.00 4.00
208 211 1.005630 GCAGCTCGAGTTCAGGTGT 60.006 57.895 15.13 0.00 40.77 4.16
210 213 1.734047 GCAGCTCGAGTTCAGGTGTAG 60.734 57.143 15.13 0.00 40.77 2.74
213 216 0.798771 CTCGAGTTCAGGTGTAGCGC 60.799 60.000 3.62 0.00 0.00 5.92
275 301 2.758089 GCGAGGAGGCGTCGACTTA 61.758 63.158 14.70 0.00 43.12 2.24
323 349 1.525923 CACTGCTCTGGAGGGGATG 59.474 63.158 0.00 0.00 0.00 3.51
366 392 1.071471 AGTTGTTGCGGTGGGAGAG 59.929 57.895 0.00 0.00 0.00 3.20
367 393 1.966451 GTTGTTGCGGTGGGAGAGG 60.966 63.158 0.00 0.00 0.00 3.69
408 437 7.912383 TGCAAAACCTAGTTTAGATAATACGC 58.088 34.615 0.00 0.00 34.43 4.42
424 453 9.451002 AGATAATACGCTGCTTCTAGTTATCTA 57.549 33.333 13.03 0.00 36.45 1.98
511 540 7.397892 TCGCAATGATTTCCCTTATTTTGTA 57.602 32.000 0.00 0.00 0.00 2.41
512 541 7.831753 TCGCAATGATTTCCCTTATTTTGTAA 58.168 30.769 0.00 0.00 0.00 2.41
523 552 9.511272 TTCCCTTATTTTGTAACTACTCTTTCC 57.489 33.333 0.00 0.00 0.00 3.13
524 553 7.820872 TCCCTTATTTTGTAACTACTCTTTCCG 59.179 37.037 0.00 0.00 0.00 4.30
525 554 7.605309 CCCTTATTTTGTAACTACTCTTTCCGT 59.395 37.037 0.00 0.00 0.00 4.69
526 555 8.654215 CCTTATTTTGTAACTACTCTTTCCGTC 58.346 37.037 0.00 0.00 0.00 4.79
527 556 9.420551 CTTATTTTGTAACTACTCTTTCCGTCT 57.579 33.333 0.00 0.00 0.00 4.18
528 557 7.886405 ATTTTGTAACTACTCTTTCCGTCTC 57.114 36.000 0.00 0.00 0.00 3.36
529 558 6.395426 TTTGTAACTACTCTTTCCGTCTCA 57.605 37.500 0.00 0.00 0.00 3.27
530 559 6.395426 TTGTAACTACTCTTTCCGTCTCAA 57.605 37.500 0.00 0.00 0.00 3.02
531 560 6.395426 TGTAACTACTCTTTCCGTCTCAAA 57.605 37.500 0.00 0.00 0.00 2.69
532 561 6.808829 TGTAACTACTCTTTCCGTCTCAAAA 58.191 36.000 0.00 0.00 0.00 2.44
533 562 7.439381 TGTAACTACTCTTTCCGTCTCAAAAT 58.561 34.615 0.00 0.00 0.00 1.82
534 563 8.579006 TGTAACTACTCTTTCCGTCTCAAAATA 58.421 33.333 0.00 0.00 0.00 1.40
535 564 9.415544 GTAACTACTCTTTCCGTCTCAAAATAA 57.584 33.333 0.00 0.00 0.00 1.40
536 565 8.535690 AACTACTCTTTCCGTCTCAAAATAAG 57.464 34.615 0.00 0.00 0.00 1.73
537 566 7.893658 ACTACTCTTTCCGTCTCAAAATAAGA 58.106 34.615 0.00 0.00 0.00 2.10
538 567 8.030106 ACTACTCTTTCCGTCTCAAAATAAGAG 58.970 37.037 0.00 0.00 41.60 2.85
539 568 6.760291 ACTCTTTCCGTCTCAAAATAAGAGT 58.240 36.000 0.00 0.00 43.09 3.24
540 569 6.869388 ACTCTTTCCGTCTCAAAATAAGAGTC 59.131 38.462 0.00 0.00 43.97 3.36
541 570 6.994221 TCTTTCCGTCTCAAAATAAGAGTCT 58.006 36.000 0.00 0.00 34.73 3.24
542 571 7.091443 TCTTTCCGTCTCAAAATAAGAGTCTC 58.909 38.462 0.00 0.00 34.73 3.36
543 572 5.977489 TCCGTCTCAAAATAAGAGTCTCA 57.023 39.130 1.94 0.00 34.73 3.27
544 573 6.340962 TCCGTCTCAAAATAAGAGTCTCAA 57.659 37.500 1.94 0.00 34.73 3.02
545 574 6.157211 TCCGTCTCAAAATAAGAGTCTCAAC 58.843 40.000 1.94 0.00 34.73 3.18
546 575 6.015350 TCCGTCTCAAAATAAGAGTCTCAACT 60.015 38.462 1.94 0.00 38.88 3.16
547 576 6.647067 CCGTCTCAAAATAAGAGTCTCAACTT 59.353 38.462 1.94 0.00 35.28 2.66
548 577 7.171678 CCGTCTCAAAATAAGAGTCTCAACTTT 59.828 37.037 1.94 0.00 35.28 2.66
549 578 8.006590 CGTCTCAAAATAAGAGTCTCAACTTTG 58.993 37.037 1.94 6.52 35.28 2.77
550 579 8.831550 GTCTCAAAATAAGAGTCTCAACTTTGT 58.168 33.333 1.94 0.00 35.28 2.83
553 582 9.832445 TCAAAATAAGAGTCTCAACTTTGTACT 57.168 29.630 1.94 1.11 35.28 2.73
561 590 9.968870 AGAGTCTCAACTTTGTACTAAAGTTAG 57.031 33.333 23.56 20.62 45.57 2.34
562 591 8.590719 AGTCTCAACTTTGTACTAAAGTTAGC 57.409 34.615 23.56 17.06 45.57 3.09
563 592 8.202137 AGTCTCAACTTTGTACTAAAGTTAGCA 58.798 33.333 23.56 15.17 45.57 3.49
564 593 8.274248 GTCTCAACTTTGTACTAAAGTTAGCAC 58.726 37.037 23.56 18.31 45.57 4.40
565 594 7.982919 TCTCAACTTTGTACTAAAGTTAGCACA 59.017 33.333 23.56 0.82 45.57 4.57
566 595 8.495361 TCAACTTTGTACTAAAGTTAGCACAA 57.505 30.769 23.56 11.25 45.57 3.33
567 596 8.948145 TCAACTTTGTACTAAAGTTAGCACAAA 58.052 29.630 23.56 20.59 46.64 2.83
572 601 9.777575 TTTGTACTAAAGTTAGCACAAAGTTTC 57.222 29.630 19.02 0.00 45.22 2.78
573 602 7.623770 TGTACTAAAGTTAGCACAAAGTTTCG 58.376 34.615 2.29 1.59 34.88 3.46
574 603 6.913873 ACTAAAGTTAGCACAAAGTTTCGA 57.086 33.333 0.00 0.00 34.60 3.71
575 604 6.712549 ACTAAAGTTAGCACAAAGTTTCGAC 58.287 36.000 0.00 0.00 34.60 4.20
576 605 5.554822 AAAGTTAGCACAAAGTTTCGACA 57.445 34.783 0.00 0.00 28.07 4.35
577 606 5.751243 AAGTTAGCACAAAGTTTCGACAT 57.249 34.783 0.00 0.00 0.00 3.06
578 607 5.751243 AGTTAGCACAAAGTTTCGACATT 57.249 34.783 0.00 0.00 0.00 2.71
579 608 6.131544 AGTTAGCACAAAGTTTCGACATTT 57.868 33.333 0.00 0.00 0.00 2.32
580 609 6.560711 AGTTAGCACAAAGTTTCGACATTTT 58.439 32.000 0.00 0.00 0.00 1.82
581 610 7.033185 AGTTAGCACAAAGTTTCGACATTTTT 58.967 30.769 0.00 0.00 0.00 1.94
651 680 8.689061 TGTAGCTATATATATTACCACCAACGG 58.311 37.037 0.00 0.00 0.00 4.44
652 681 7.966339 AGCTATATATATTACCACCAACGGA 57.034 36.000 0.00 0.00 0.00 4.69
653 682 8.008513 AGCTATATATATTACCACCAACGGAG 57.991 38.462 0.00 0.00 0.00 4.63
674 703 8.347771 ACGGAGTTTCTTTTTAGACAAATTACC 58.652 33.333 0.00 0.00 37.78 2.85
675 704 8.347035 CGGAGTTTCTTTTTAGACAAATTACCA 58.653 33.333 0.00 0.00 0.00 3.25
676 705 9.459640 GGAGTTTCTTTTTAGACAAATTACCAC 57.540 33.333 0.00 0.00 0.00 4.16
702 731 2.770130 TGGCCTCCCACAATTCCC 59.230 61.111 3.32 0.00 35.79 3.97
703 732 2.042944 GGCCTCCCACAATTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
704 733 2.770130 GCCTCCCACAATTCCCCA 59.230 61.111 0.00 0.00 0.00 4.96
715 744 2.158019 ACAATTCCCCAACCATCCCTTT 60.158 45.455 0.00 0.00 0.00 3.11
717 746 4.265261 ACAATTCCCCAACCATCCCTTTAT 60.265 41.667 0.00 0.00 0.00 1.40
718 747 3.396685 TTCCCCAACCATCCCTTTATG 57.603 47.619 0.00 0.00 0.00 1.90
757 786 1.815421 CATCTCTTGTTCGGGCCGG 60.815 63.158 27.98 9.72 0.00 6.13
772 801 4.473520 CGGCAGCCGTCCTTCCAT 62.474 66.667 26.69 0.00 42.73 3.41
773 802 2.825836 GGCAGCCGTCCTTCCATG 60.826 66.667 0.00 0.00 0.00 3.66
774 803 2.825836 GCAGCCGTCCTTCCATGG 60.826 66.667 4.97 4.97 0.00 3.66
775 804 2.671070 CAGCCGTCCTTCCATGGT 59.329 61.111 12.58 0.00 0.00 3.55
776 805 1.450312 CAGCCGTCCTTCCATGGTC 60.450 63.158 12.58 0.00 0.00 4.02
777 806 1.613630 AGCCGTCCTTCCATGGTCT 60.614 57.895 12.58 0.00 0.00 3.85
807 2394 4.021719 TCTGGTTCTACACTTTTCCGGTAG 60.022 45.833 0.00 0.00 36.65 3.18
828 2415 3.849951 GGCCGATCGAAGAGCCCA 61.850 66.667 18.66 0.00 41.58 5.36
859 2446 0.324614 TATGTCCCACCTGCAGTGTG 59.675 55.000 21.62 21.62 45.74 3.82
860 2447 1.418097 ATGTCCCACCTGCAGTGTGA 61.418 55.000 27.05 14.37 45.74 3.58
861 2448 1.376466 GTCCCACCTGCAGTGTGAT 59.624 57.895 27.05 2.15 45.74 3.06
862 2449 0.250901 GTCCCACCTGCAGTGTGATT 60.251 55.000 27.05 0.00 45.74 2.57
863 2450 0.036732 TCCCACCTGCAGTGTGATTC 59.963 55.000 27.05 0.00 45.74 2.52
864 2451 0.037303 CCCACCTGCAGTGTGATTCT 59.963 55.000 27.05 0.00 45.74 2.40
865 2452 1.546323 CCCACCTGCAGTGTGATTCTT 60.546 52.381 27.05 0.00 45.74 2.52
866 2453 1.808945 CCACCTGCAGTGTGATTCTTC 59.191 52.381 27.05 0.00 45.74 2.87
867 2454 2.551721 CCACCTGCAGTGTGATTCTTCT 60.552 50.000 27.05 0.00 45.74 2.85
868 2455 3.144506 CACCTGCAGTGTGATTCTTCTT 58.855 45.455 23.25 0.00 41.93 2.52
869 2456 3.058432 CACCTGCAGTGTGATTCTTCTTG 60.058 47.826 23.25 2.97 41.93 3.02
870 2457 3.144506 CCTGCAGTGTGATTCTTCTTGT 58.855 45.455 13.81 0.00 0.00 3.16
871 2458 3.188048 CCTGCAGTGTGATTCTTCTTGTC 59.812 47.826 13.81 0.00 0.00 3.18
872 2459 4.063689 CTGCAGTGTGATTCTTCTTGTCT 58.936 43.478 5.25 0.00 0.00 3.41
873 2460 5.213891 TGCAGTGTGATTCTTCTTGTCTA 57.786 39.130 0.00 0.00 0.00 2.59
874 2461 5.610398 TGCAGTGTGATTCTTCTTGTCTAA 58.390 37.500 0.00 0.00 0.00 2.10
875 2462 6.054941 TGCAGTGTGATTCTTCTTGTCTAAA 58.945 36.000 0.00 0.00 0.00 1.85
876 2463 6.542005 TGCAGTGTGATTCTTCTTGTCTAAAA 59.458 34.615 0.00 0.00 0.00 1.52
877 2464 7.066887 TGCAGTGTGATTCTTCTTGTCTAAAAA 59.933 33.333 0.00 0.00 0.00 1.94
931 2518 6.208994 ACGAGTCCTACTAAAACTCTTGTCAT 59.791 38.462 0.00 0.00 37.79 3.06
932 2519 6.528423 CGAGTCCTACTAAAACTCTTGTCATG 59.472 42.308 0.00 0.00 37.79 3.07
933 2520 7.304497 AGTCCTACTAAAACTCTTGTCATGT 57.696 36.000 0.00 0.00 0.00 3.21
934 2521 7.379750 AGTCCTACTAAAACTCTTGTCATGTC 58.620 38.462 0.00 0.00 0.00 3.06
935 2522 6.590677 GTCCTACTAAAACTCTTGTCATGTCC 59.409 42.308 0.00 0.00 0.00 4.02
936 2523 6.497259 TCCTACTAAAACTCTTGTCATGTCCT 59.503 38.462 0.00 0.00 0.00 3.85
940 2527 0.326264 ACTCTTGTCATGTCCTGGGC 59.674 55.000 0.00 0.00 0.00 5.36
1053 2640 0.818040 AATTCAACGCCGCCCTATCC 60.818 55.000 0.00 0.00 0.00 2.59
1066 2653 4.020573 CCGCCCTATCCTTCATACAACATA 60.021 45.833 0.00 0.00 0.00 2.29
1095 2682 4.803426 CTCGCGTCCAGCCAGACC 62.803 72.222 5.77 0.00 44.76 3.85
1099 2686 2.187946 CGTCCAGCCAGACCATCC 59.812 66.667 0.00 0.00 32.91 3.51
1100 2687 2.659063 CGTCCAGCCAGACCATCCA 61.659 63.158 0.00 0.00 32.91 3.41
1101 2688 1.078143 GTCCAGCCAGACCATCCAC 60.078 63.158 0.00 0.00 0.00 4.02
1104 2691 3.321648 AGCCAGACCATCCACGCA 61.322 61.111 0.00 0.00 0.00 5.24
1105 2692 2.821366 GCCAGACCATCCACGCAG 60.821 66.667 0.00 0.00 0.00 5.18
1106 2693 2.981302 CCAGACCATCCACGCAGA 59.019 61.111 0.00 0.00 0.00 4.26
1107 2694 1.153489 CCAGACCATCCACGCAGAG 60.153 63.158 0.00 0.00 0.00 3.35
1260 2849 2.132996 CCACCACCAAGCTGCCAAA 61.133 57.895 0.00 0.00 0.00 3.28
1272 2861 2.592287 GCCAAACCCGTCCGTGAA 60.592 61.111 0.00 0.00 0.00 3.18
1275 2864 1.226030 CCAAACCCGTCCGTGAAGAC 61.226 60.000 0.00 0.00 0.00 3.01
1276 2865 1.070275 AAACCCGTCCGTGAAGACC 59.930 57.895 0.00 0.00 32.91 3.85
1277 2866 2.387476 AAACCCGTCCGTGAAGACCC 62.387 60.000 0.00 0.00 32.91 4.46
1280 2869 2.571216 CCGTCCGTGAAGACCCTGT 61.571 63.158 0.00 0.00 32.91 4.00
1376 2965 0.984230 TTCTTGGAGCGGGTGAAGAT 59.016 50.000 0.00 0.00 0.00 2.40
1416 3005 0.322277 ACATGCTCCTGGTGCTTCTG 60.322 55.000 20.19 16.17 0.00 3.02
1463 3052 0.026285 AACGCGCATCAAATCTACGC 59.974 50.000 5.73 0.00 45.72 4.42
1473 3062 0.179081 AAATCTACGCGAAGGCCCTC 60.179 55.000 15.93 0.00 35.02 4.30
1491 3080 3.125573 GAGGTTTTCGGCTCCGCC 61.126 66.667 2.96 0.00 46.75 6.13
1566 3155 4.135493 GACTTTCTGACGCGGCGC 62.135 66.667 24.21 24.21 0.00 6.53
1590 3179 2.960688 AAAGGAGGAGCCGGAGCAC 61.961 63.158 5.05 0.00 43.56 4.40
1692 3293 1.446966 GAAGAGCGGCAGTGTCTCC 60.447 63.158 1.45 0.00 0.00 3.71
1720 3321 2.974489 GACGCGTGGGAGTTCGAGA 61.974 63.158 20.70 0.00 0.00 4.04
1725 3326 1.292541 GTGGGAGTTCGAGACCACC 59.707 63.158 15.00 8.90 45.85 4.61
1758 3359 2.092882 GGTCACGCTAAGACGCACC 61.093 63.158 0.00 0.00 36.87 5.01
1767 3368 2.194271 CTAAGACGCACCGAGAAATCC 58.806 52.381 0.00 0.00 0.00 3.01
1773 3374 0.035439 GCACCGAGAAATCCCTGGAA 60.035 55.000 0.00 0.00 0.00 3.53
1776 3377 1.834263 ACCGAGAAATCCCTGGAAGAG 59.166 52.381 0.00 0.00 34.07 2.85
1780 3381 1.484240 AGAAATCCCTGGAAGAGCTCG 59.516 52.381 8.37 0.00 34.07 5.03
1790 3391 0.247736 GAAGAGCTCGAGCCAAGGAA 59.752 55.000 32.94 0.00 43.38 3.36
1870 3480 0.107945 GCTGGAGCAACTCTACCCTG 60.108 60.000 0.00 0.00 41.59 4.45
1991 3601 1.154205 ACGATATTGCGCAGGCTGAC 61.154 55.000 20.86 9.99 40.82 3.51
2027 3637 1.889105 CCGTGAAGATGGCGATGGG 60.889 63.158 0.00 0.00 0.00 4.00
2065 3675 3.760035 TCGAGGCCCGAGTGAAGC 61.760 66.667 11.66 0.00 43.23 3.86
2066 3676 3.764466 CGAGGCCCGAGTGAAGCT 61.764 66.667 0.00 0.00 41.76 3.74
2087 3697 1.945354 CTTGTCTTAGAGCGGCGGGA 61.945 60.000 9.78 0.00 0.00 5.14
2089 3699 1.300233 GTCTTAGAGCGGCGGGATG 60.300 63.158 9.78 0.00 0.00 3.51
2130 3746 5.235186 CGGGATGAACAAGCTTAATGTAGAG 59.765 44.000 0.00 0.00 0.00 2.43
2132 3748 6.599638 GGGATGAACAAGCTTAATGTAGAGTT 59.400 38.462 0.00 0.00 0.00 3.01
2133 3749 7.414540 GGGATGAACAAGCTTAATGTAGAGTTG 60.415 40.741 0.00 0.00 0.00 3.16
2135 3751 9.151471 GATGAACAAGCTTAATGTAGAGTTGTA 57.849 33.333 0.00 0.00 0.00 2.41
2136 3752 8.534333 TGAACAAGCTTAATGTAGAGTTGTAG 57.466 34.615 0.00 0.00 0.00 2.74
2137 3753 6.969828 ACAAGCTTAATGTAGAGTTGTAGC 57.030 37.500 0.00 0.00 0.00 3.58
2138 3754 5.875359 ACAAGCTTAATGTAGAGTTGTAGCC 59.125 40.000 0.00 0.00 0.00 3.93
2139 3755 5.941555 AGCTTAATGTAGAGTTGTAGCCT 57.058 39.130 0.00 0.00 0.00 4.58
2160 3776 1.068417 CCGTGTGGTGGTTCTTCGA 59.932 57.895 0.00 0.00 0.00 3.71
2242 3859 3.118920 TGTCGTGAAGTTGAAGACCAAGA 60.119 43.478 6.01 0.00 35.03 3.02
2262 3879 4.495422 AGATTATCGTTGCTTTGAGACGT 58.505 39.130 0.00 0.00 37.95 4.34
2263 3880 4.929808 AGATTATCGTTGCTTTGAGACGTT 59.070 37.500 0.00 0.00 37.95 3.99
2264 3881 6.097356 AGATTATCGTTGCTTTGAGACGTTA 58.903 36.000 0.00 0.00 37.95 3.18
2265 3882 6.588756 AGATTATCGTTGCTTTGAGACGTTAA 59.411 34.615 0.00 0.00 37.95 2.01
2266 3883 6.715344 TTATCGTTGCTTTGAGACGTTAAT 57.285 33.333 0.00 0.00 37.95 1.40
2267 3884 5.607119 ATCGTTGCTTTGAGACGTTAATT 57.393 34.783 0.00 0.00 37.95 1.40
2268 3885 5.412526 TCGTTGCTTTGAGACGTTAATTT 57.587 34.783 0.00 0.00 37.95 1.82
2269 3886 6.528014 TCGTTGCTTTGAGACGTTAATTTA 57.472 33.333 0.00 0.00 37.95 1.40
2270 3887 6.357198 TCGTTGCTTTGAGACGTTAATTTAC 58.643 36.000 0.00 0.00 37.95 2.01
2271 3888 6.201425 TCGTTGCTTTGAGACGTTAATTTACT 59.799 34.615 0.00 0.00 37.95 2.24
2272 3889 6.849305 CGTTGCTTTGAGACGTTAATTTACTT 59.151 34.615 0.00 0.00 32.52 2.24
2273 3890 7.375017 CGTTGCTTTGAGACGTTAATTTACTTT 59.625 33.333 0.00 0.00 32.52 2.66
2274 3891 9.654417 GTTGCTTTGAGACGTTAATTTACTTTA 57.346 29.630 0.00 0.00 0.00 1.85
2275 3892 9.872757 TTGCTTTGAGACGTTAATTTACTTTAG 57.127 29.630 0.00 0.00 0.00 1.85
2276 3893 8.013378 TGCTTTGAGACGTTAATTTACTTTAGC 58.987 33.333 0.00 0.00 0.00 3.09
2277 3894 8.228464 GCTTTGAGACGTTAATTTACTTTAGCT 58.772 33.333 0.00 0.00 0.00 3.32
2301 3918 5.930837 TTTTTCAGTTTGGTCAGTCCATT 57.069 34.783 0.00 0.00 46.60 3.16
2302 3919 5.930837 TTTTCAGTTTGGTCAGTCCATTT 57.069 34.783 0.00 0.00 46.60 2.32
2303 3920 5.514274 TTTCAGTTTGGTCAGTCCATTTC 57.486 39.130 0.00 0.00 46.60 2.17
2304 3921 4.437682 TCAGTTTGGTCAGTCCATTTCT 57.562 40.909 0.00 0.00 46.60 2.52
2305 3922 4.792068 TCAGTTTGGTCAGTCCATTTCTT 58.208 39.130 0.00 0.00 46.60 2.52
2306 3923 4.580167 TCAGTTTGGTCAGTCCATTTCTTG 59.420 41.667 0.00 0.00 46.60 3.02
2307 3924 3.891366 AGTTTGGTCAGTCCATTTCTTGG 59.109 43.478 0.00 0.00 46.60 3.61
2308 3925 1.909700 TGGTCAGTCCATTTCTTGGC 58.090 50.000 0.00 0.00 46.01 4.52
2309 3926 1.177401 GGTCAGTCCATTTCTTGGCC 58.823 55.000 0.00 0.00 46.01 5.36
2310 3927 0.804989 GTCAGTCCATTTCTTGGCCG 59.195 55.000 0.00 0.00 46.01 6.13
2311 3928 0.400213 TCAGTCCATTTCTTGGCCGT 59.600 50.000 0.00 0.00 46.01 5.68
2312 3929 0.804989 CAGTCCATTTCTTGGCCGTC 59.195 55.000 0.00 0.00 46.01 4.79
2313 3930 0.673644 AGTCCATTTCTTGGCCGTCG 60.674 55.000 0.00 0.00 46.01 5.12
2314 3931 0.672401 GTCCATTTCTTGGCCGTCGA 60.672 55.000 0.00 0.00 46.01 4.20
2315 3932 0.251916 TCCATTTCTTGGCCGTCGAT 59.748 50.000 0.00 0.00 46.01 3.59
2316 3933 1.094785 CCATTTCTTGGCCGTCGATT 58.905 50.000 0.00 0.00 39.09 3.34
2317 3934 1.472480 CCATTTCTTGGCCGTCGATTT 59.528 47.619 0.00 0.00 39.09 2.17
2318 3935 2.094752 CCATTTCTTGGCCGTCGATTTT 60.095 45.455 0.00 0.00 39.09 1.82
2319 3936 3.574614 CATTTCTTGGCCGTCGATTTTT 58.425 40.909 0.00 0.00 0.00 1.94
2320 3937 2.697431 TTCTTGGCCGTCGATTTTTG 57.303 45.000 0.00 0.00 0.00 2.44
2321 3938 0.239879 TCTTGGCCGTCGATTTTTGC 59.760 50.000 0.00 0.00 0.00 3.68
2322 3939 0.240945 CTTGGCCGTCGATTTTTGCT 59.759 50.000 0.00 0.00 0.00 3.91
2323 3940 0.239879 TTGGCCGTCGATTTTTGCTC 59.760 50.000 0.00 0.00 0.00 4.26
2324 3941 0.605319 TGGCCGTCGATTTTTGCTCT 60.605 50.000 0.00 0.00 0.00 4.09
2325 3942 0.179189 GGCCGTCGATTTTTGCTCTG 60.179 55.000 0.00 0.00 0.00 3.35
2326 3943 0.796312 GCCGTCGATTTTTGCTCTGA 59.204 50.000 0.00 0.00 0.00 3.27
2327 3944 1.201965 GCCGTCGATTTTTGCTCTGAG 60.202 52.381 0.00 0.00 0.00 3.35
2328 3945 2.337583 CCGTCGATTTTTGCTCTGAGA 58.662 47.619 9.28 0.00 0.00 3.27
2329 3946 2.932614 CCGTCGATTTTTGCTCTGAGAT 59.067 45.455 9.28 0.00 0.00 2.75
2330 3947 3.372206 CCGTCGATTTTTGCTCTGAGATT 59.628 43.478 9.28 0.00 0.00 2.40
2331 3948 4.142816 CCGTCGATTTTTGCTCTGAGATTT 60.143 41.667 9.28 0.00 0.00 2.17
2332 3949 4.785055 CGTCGATTTTTGCTCTGAGATTTG 59.215 41.667 9.28 0.00 0.00 2.32
2333 3950 5.615544 CGTCGATTTTTGCTCTGAGATTTGT 60.616 40.000 9.28 0.00 0.00 2.83
2334 3951 5.566774 GTCGATTTTTGCTCTGAGATTTGTG 59.433 40.000 9.28 0.00 0.00 3.33
2335 3952 4.322804 CGATTTTTGCTCTGAGATTTGTGC 59.677 41.667 9.28 0.00 0.00 4.57
2336 3953 4.924305 TTTTTGCTCTGAGATTTGTGCT 57.076 36.364 9.28 0.00 0.00 4.40
2337 3954 3.909776 TTTGCTCTGAGATTTGTGCTG 57.090 42.857 9.28 0.00 0.00 4.41
2338 3955 1.162698 TGCTCTGAGATTTGTGCTGC 58.837 50.000 9.28 0.00 0.00 5.25
2339 3956 1.162698 GCTCTGAGATTTGTGCTGCA 58.837 50.000 9.28 0.00 0.00 4.41
2340 3957 1.743958 GCTCTGAGATTTGTGCTGCAT 59.256 47.619 9.28 0.00 0.00 3.96
2341 3958 2.163815 GCTCTGAGATTTGTGCTGCATT 59.836 45.455 9.28 0.00 0.00 3.56
2342 3959 3.367087 GCTCTGAGATTTGTGCTGCATTT 60.367 43.478 9.28 0.00 0.00 2.32
2343 3960 4.806330 CTCTGAGATTTGTGCTGCATTTT 58.194 39.130 5.27 0.00 0.00 1.82
2344 3961 5.204409 TCTGAGATTTGTGCTGCATTTTT 57.796 34.783 5.27 0.00 0.00 1.94
2345 3962 5.224888 TCTGAGATTTGTGCTGCATTTTTC 58.775 37.500 5.27 1.61 0.00 2.29
2346 3963 5.010314 TCTGAGATTTGTGCTGCATTTTTCT 59.990 36.000 5.27 6.72 0.00 2.52
2347 3964 6.207221 TCTGAGATTTGTGCTGCATTTTTCTA 59.793 34.615 5.27 0.00 0.00 2.10
2348 3965 6.151691 TGAGATTTGTGCTGCATTTTTCTAC 58.848 36.000 5.27 2.87 0.00 2.59
2349 3966 5.473039 AGATTTGTGCTGCATTTTTCTACC 58.527 37.500 5.27 0.00 0.00 3.18
2350 3967 4.935352 TTTGTGCTGCATTTTTCTACCT 57.065 36.364 5.27 0.00 0.00 3.08
2351 3968 4.935352 TTGTGCTGCATTTTTCTACCTT 57.065 36.364 5.27 0.00 0.00 3.50
2352 3969 4.935352 TGTGCTGCATTTTTCTACCTTT 57.065 36.364 5.27 0.00 0.00 3.11
2353 3970 6.398234 TTGTGCTGCATTTTTCTACCTTTA 57.602 33.333 5.27 0.00 0.00 1.85
2354 3971 6.588719 TGTGCTGCATTTTTCTACCTTTAT 57.411 33.333 5.27 0.00 0.00 1.40
2355 3972 6.991938 TGTGCTGCATTTTTCTACCTTTATT 58.008 32.000 5.27 0.00 0.00 1.40
2356 3973 6.867816 TGTGCTGCATTTTTCTACCTTTATTG 59.132 34.615 5.27 0.00 0.00 1.90
2380 3997 6.428465 TGTTCGGATTTGCTATTTTACAGTCA 59.572 34.615 0.00 0.00 0.00 3.41
2419 4036 1.067706 CAACATTCAAATCGCTGGCCA 60.068 47.619 4.71 4.71 0.00 5.36
2513 4133 3.771160 CAGCCCGTTACCGCTCCT 61.771 66.667 0.00 0.00 31.40 3.69
2528 4149 2.040359 CCTCCCCCTCCCCTCTTC 60.040 72.222 0.00 0.00 0.00 2.87
2532 4153 2.456840 CCCCTCCCCTCTTCCAGT 59.543 66.667 0.00 0.00 0.00 4.00
2555 4195 2.673775 TGTCCCCTTTCATTTGAGCA 57.326 45.000 0.00 0.00 0.00 4.26
2556 4196 2.517959 TGTCCCCTTTCATTTGAGCAG 58.482 47.619 0.00 0.00 0.00 4.24
2557 4197 2.158475 TGTCCCCTTTCATTTGAGCAGT 60.158 45.455 0.00 0.00 0.00 4.40
2558 4198 2.229784 GTCCCCTTTCATTTGAGCAGTG 59.770 50.000 0.00 0.00 0.00 3.66
2559 4199 1.547372 CCCCTTTCATTTGAGCAGTGG 59.453 52.381 0.00 0.00 0.00 4.00
2560 4200 2.517959 CCCTTTCATTTGAGCAGTGGA 58.482 47.619 0.00 0.00 0.00 4.02
2561 4201 3.094572 CCCTTTCATTTGAGCAGTGGAT 58.905 45.455 0.00 0.00 0.00 3.41
2562 4202 3.119245 CCCTTTCATTTGAGCAGTGGATG 60.119 47.826 0.00 0.00 0.00 3.51
2582 4222 3.096852 TGCGAGGAAGATAGAGGAACAA 58.903 45.455 0.00 0.00 0.00 2.83
2594 4234 2.727544 GAACAAGCGCTTGGGCAA 59.272 55.556 43.26 0.00 44.45 4.52
2622 4262 3.436704 GCGATTCCTTTCTGTTCATGTCA 59.563 43.478 0.00 0.00 0.00 3.58
2688 4328 0.826715 CTTGGATTCTCGCCTCCTGA 59.173 55.000 0.00 0.00 32.47 3.86
2730 4370 0.523546 TCTCTCGAGCGCGTGATTTC 60.524 55.000 14.70 0.00 39.04 2.17
2825 4465 0.843309 TGTGTGTTGTGATCCCAGGT 59.157 50.000 0.00 0.00 0.00 4.00
2882 4524 3.462483 TTAGTGGTTCGTTCTGCTTCA 57.538 42.857 0.00 0.00 0.00 3.02
2885 4527 0.179094 TGGTTCGTTCTGCTTCACGT 60.179 50.000 2.78 0.00 37.66 4.49
2934 4576 2.034812 GTGGTGTCCGCCATTTTTGTTA 59.965 45.455 2.42 0.00 41.08 2.41
2935 4577 2.294791 TGGTGTCCGCCATTTTTGTTAG 59.705 45.455 0.00 0.00 32.81 2.34
2936 4578 2.324860 GTGTCCGCCATTTTTGTTAGC 58.675 47.619 0.00 0.00 0.00 3.09
2937 4579 2.030274 GTGTCCGCCATTTTTGTTAGCT 60.030 45.455 0.00 0.00 0.00 3.32
2938 4580 2.227865 TGTCCGCCATTTTTGTTAGCTC 59.772 45.455 0.00 0.00 0.00 4.09
2939 4581 2.488153 GTCCGCCATTTTTGTTAGCTCT 59.512 45.455 0.00 0.00 0.00 4.09
2940 4582 3.687698 GTCCGCCATTTTTGTTAGCTCTA 59.312 43.478 0.00 0.00 0.00 2.43
2941 4583 3.687698 TCCGCCATTTTTGTTAGCTCTAC 59.312 43.478 0.00 0.00 0.00 2.59
2942 4584 3.689649 CCGCCATTTTTGTTAGCTCTACT 59.310 43.478 0.00 0.00 0.00 2.57
2943 4585 4.873827 CCGCCATTTTTGTTAGCTCTACTA 59.126 41.667 0.00 0.00 0.00 1.82
2944 4586 5.353123 CCGCCATTTTTGTTAGCTCTACTAA 59.647 40.000 0.00 0.00 38.57 2.24
2945 4587 6.456988 CCGCCATTTTTGTTAGCTCTACTAAG 60.457 42.308 0.00 0.00 41.56 2.18
2946 4588 6.258899 GCCATTTTTGTTAGCTCTACTAAGC 58.741 40.000 0.00 0.00 41.56 3.09
2956 4598 3.791245 GCTCTACTAAGCTCATGCAAGT 58.209 45.455 0.00 0.00 42.74 3.16
2957 4599 3.555139 GCTCTACTAAGCTCATGCAAGTG 59.445 47.826 0.00 0.00 42.74 3.16
2958 4600 3.525537 TCTACTAAGCTCATGCAAGTGC 58.474 45.455 7.86 7.86 42.74 4.40
2959 4601 2.486472 ACTAAGCTCATGCAAGTGCT 57.514 45.000 12.35 12.35 42.74 4.40
2960 4602 3.616956 ACTAAGCTCATGCAAGTGCTA 57.383 42.857 17.71 6.88 42.74 3.49
2961 4603 3.529533 ACTAAGCTCATGCAAGTGCTAG 58.470 45.455 17.71 15.96 42.74 3.42
2962 4604 1.747709 AAGCTCATGCAAGTGCTAGG 58.252 50.000 17.71 0.00 42.74 3.02
2963 4605 0.907486 AGCTCATGCAAGTGCTAGGA 59.093 50.000 16.11 0.00 42.74 2.94
2964 4606 1.489649 AGCTCATGCAAGTGCTAGGAT 59.510 47.619 16.11 0.00 42.74 3.24
2965 4607 2.702478 AGCTCATGCAAGTGCTAGGATA 59.298 45.455 16.11 0.00 42.74 2.59
2966 4608 3.327172 AGCTCATGCAAGTGCTAGGATAT 59.673 43.478 16.11 0.00 42.74 1.63
2967 4609 4.070716 GCTCATGCAAGTGCTAGGATATT 58.929 43.478 8.62 0.00 42.66 1.28
2968 4610 4.518211 GCTCATGCAAGTGCTAGGATATTT 59.482 41.667 8.62 0.00 42.66 1.40
2969 4611 5.562307 GCTCATGCAAGTGCTAGGATATTTG 60.562 44.000 8.62 0.00 42.66 2.32
2970 4612 5.439721 TCATGCAAGTGCTAGGATATTTGT 58.560 37.500 4.69 0.00 42.66 2.83
2971 4613 5.887598 TCATGCAAGTGCTAGGATATTTGTT 59.112 36.000 4.69 0.00 42.66 2.83
2972 4614 6.377996 TCATGCAAGTGCTAGGATATTTGTTT 59.622 34.615 4.69 0.00 42.66 2.83
2973 4615 6.588719 TGCAAGTGCTAGGATATTTGTTTT 57.411 33.333 4.69 0.00 42.66 2.43
2974 4616 6.620678 TGCAAGTGCTAGGATATTTGTTTTC 58.379 36.000 4.69 0.00 42.66 2.29
2975 4617 6.434028 TGCAAGTGCTAGGATATTTGTTTTCT 59.566 34.615 4.69 0.00 42.66 2.52
2976 4618 6.749118 GCAAGTGCTAGGATATTTGTTTTCTG 59.251 38.462 0.00 0.00 38.21 3.02
2977 4619 7.575720 GCAAGTGCTAGGATATTTGTTTTCTGT 60.576 37.037 0.00 0.00 38.21 3.41
2978 4620 8.299570 CAAGTGCTAGGATATTTGTTTTCTGTT 58.700 33.333 0.00 0.00 0.00 3.16
2979 4621 7.820648 AGTGCTAGGATATTTGTTTTCTGTTG 58.179 34.615 0.00 0.00 0.00 3.33
2980 4622 7.665559 AGTGCTAGGATATTTGTTTTCTGTTGA 59.334 33.333 0.00 0.00 0.00 3.18
2981 4623 8.296713 GTGCTAGGATATTTGTTTTCTGTTGAA 58.703 33.333 0.00 0.00 0.00 2.69
2982 4624 9.023962 TGCTAGGATATTTGTTTTCTGTTGAAT 57.976 29.630 0.00 0.00 31.56 2.57
2990 4632 7.518731 TTTGTTTTCTGTTGAATAACACTGC 57.481 32.000 0.00 0.00 41.66 4.40
2991 4633 6.201226 TGTTTTCTGTTGAATAACACTGCA 57.799 33.333 0.00 0.00 41.66 4.41
2992 4634 6.804677 TGTTTTCTGTTGAATAACACTGCAT 58.195 32.000 0.00 0.00 41.66 3.96
2993 4635 6.696583 TGTTTTCTGTTGAATAACACTGCATG 59.303 34.615 0.00 0.00 41.66 4.06
2994 4636 4.424061 TCTGTTGAATAACACTGCATGC 57.576 40.909 11.82 11.82 41.66 4.06
2995 4637 3.819902 TCTGTTGAATAACACTGCATGCA 59.180 39.130 21.29 21.29 41.66 3.96
2996 4638 3.899734 TGTTGAATAACACTGCATGCAC 58.100 40.909 18.46 4.88 41.66 4.57
2997 4639 2.898181 TGAATAACACTGCATGCACG 57.102 45.000 18.46 15.38 0.00 5.34
2998 4640 2.421619 TGAATAACACTGCATGCACGA 58.578 42.857 18.46 0.16 0.00 4.35
2999 4641 3.009026 TGAATAACACTGCATGCACGAT 58.991 40.909 18.46 8.30 0.00 3.73
3000 4642 3.439825 TGAATAACACTGCATGCACGATT 59.560 39.130 18.46 13.03 0.00 3.34
3001 4643 2.898181 TAACACTGCATGCACGATTG 57.102 45.000 18.46 13.62 0.00 2.67
3002 4644 1.237533 AACACTGCATGCACGATTGA 58.762 45.000 18.46 0.00 0.00 2.57
3003 4645 1.456296 ACACTGCATGCACGATTGAT 58.544 45.000 18.46 0.00 0.00 2.57
3004 4646 1.131693 ACACTGCATGCACGATTGATG 59.868 47.619 18.46 7.05 0.00 3.07
3005 4647 1.131693 CACTGCATGCACGATTGATGT 59.868 47.619 18.46 7.78 0.00 3.06
3006 4648 1.131693 ACTGCATGCACGATTGATGTG 59.868 47.619 18.46 5.44 40.32 3.21
3007 4649 1.399089 CTGCATGCACGATTGATGTGA 59.601 47.619 18.46 0.00 39.73 3.58
3008 4650 1.130938 TGCATGCACGATTGATGTGAC 59.869 47.619 18.46 0.00 39.73 3.67
3009 4651 1.853253 GCATGCACGATTGATGTGACG 60.853 52.381 14.21 0.00 39.73 4.35
3010 4652 1.394572 CATGCACGATTGATGTGACGT 59.605 47.619 0.00 0.00 39.73 4.34
3012 4654 3.568181 CACGATTGATGTGACGTGC 57.432 52.632 0.00 0.00 46.38 5.34
3013 4655 0.095245 CACGATTGATGTGACGTGCC 59.905 55.000 0.00 0.00 46.38 5.01
3014 4656 1.019278 ACGATTGATGTGACGTGCCC 61.019 55.000 0.00 0.00 37.58 5.36
3015 4657 1.018752 CGATTGATGTGACGTGCCCA 61.019 55.000 0.00 0.00 0.00 5.36
3016 4658 1.382522 GATTGATGTGACGTGCCCAT 58.617 50.000 0.00 0.00 0.00 4.00
3017 4659 1.064505 GATTGATGTGACGTGCCCATG 59.935 52.381 0.00 0.00 0.00 3.66
3018 4660 1.585267 TTGATGTGACGTGCCCATGC 61.585 55.000 0.00 0.00 38.26 4.06
3029 4671 2.418368 TGCCCATGCAAGTAGTTAGG 57.582 50.000 0.00 0.00 46.66 2.69
3030 4672 1.025041 GCCCATGCAAGTAGTTAGGC 58.975 55.000 0.00 0.00 37.47 3.93
3031 4673 1.299541 CCCATGCAAGTAGTTAGGCG 58.700 55.000 0.00 0.00 0.00 5.52
3032 4674 1.299541 CCATGCAAGTAGTTAGGCGG 58.700 55.000 0.00 0.00 0.00 6.13
3033 4675 1.299541 CATGCAAGTAGTTAGGCGGG 58.700 55.000 0.00 0.00 0.00 6.13
3034 4676 1.134521 CATGCAAGTAGTTAGGCGGGA 60.135 52.381 0.00 0.00 0.00 5.14
3035 4677 0.978151 TGCAAGTAGTTAGGCGGGAA 59.022 50.000 0.00 0.00 0.00 3.97
3036 4678 1.066430 TGCAAGTAGTTAGGCGGGAAG 60.066 52.381 0.00 0.00 0.00 3.46
3037 4679 1.066358 GCAAGTAGTTAGGCGGGAAGT 60.066 52.381 0.00 0.00 0.00 3.01
3038 4680 2.618053 CAAGTAGTTAGGCGGGAAGTG 58.382 52.381 0.00 0.00 0.00 3.16
3039 4681 0.535797 AGTAGTTAGGCGGGAAGTGC 59.464 55.000 0.00 0.00 0.00 4.40
3040 4682 0.804933 GTAGTTAGGCGGGAAGTGCG 60.805 60.000 0.00 0.00 0.00 5.34
3041 4683 2.567564 TAGTTAGGCGGGAAGTGCGC 62.568 60.000 0.00 0.00 0.00 6.09
3042 4684 3.702048 TTAGGCGGGAAGTGCGCT 61.702 61.111 9.73 0.00 0.00 5.92
3043 4685 2.352821 TTAGGCGGGAAGTGCGCTA 61.353 57.895 9.73 0.00 0.00 4.26
3044 4686 1.682451 TTAGGCGGGAAGTGCGCTAT 61.682 55.000 9.73 0.00 0.00 2.97
3045 4687 2.363711 TAGGCGGGAAGTGCGCTATG 62.364 60.000 9.73 0.00 0.00 2.23
3046 4688 3.941836 GCGGGAAGTGCGCTATGC 61.942 66.667 9.73 0.00 46.70 3.14
3055 4697 2.817834 GCGCTATGCACGTTCCCA 60.818 61.111 0.00 0.00 45.45 4.37
3056 4698 2.813179 GCGCTATGCACGTTCCCAG 61.813 63.158 0.00 0.00 45.45 4.45
3057 4699 1.447838 CGCTATGCACGTTCCCAGT 60.448 57.895 0.00 0.00 0.00 4.00
3058 4700 1.019278 CGCTATGCACGTTCCCAGTT 61.019 55.000 0.00 0.00 0.00 3.16
3059 4701 1.165270 GCTATGCACGTTCCCAGTTT 58.835 50.000 0.00 0.00 0.00 2.66
3060 4702 1.130561 GCTATGCACGTTCCCAGTTTC 59.869 52.381 0.00 0.00 0.00 2.78
3061 4703 1.737793 CTATGCACGTTCCCAGTTTCC 59.262 52.381 0.00 0.00 0.00 3.13
3062 4704 0.110486 ATGCACGTTCCCAGTTTCCT 59.890 50.000 0.00 0.00 0.00 3.36
3063 4705 0.106918 TGCACGTTCCCAGTTTCCTT 60.107 50.000 0.00 0.00 0.00 3.36
3064 4706 1.029681 GCACGTTCCCAGTTTCCTTT 58.970 50.000 0.00 0.00 0.00 3.11
3065 4707 1.407618 GCACGTTCCCAGTTTCCTTTT 59.592 47.619 0.00 0.00 0.00 2.27
3066 4708 2.543031 GCACGTTCCCAGTTTCCTTTTC 60.543 50.000 0.00 0.00 0.00 2.29
3067 4709 2.949644 CACGTTCCCAGTTTCCTTTTCT 59.050 45.455 0.00 0.00 0.00 2.52
3068 4710 3.380320 CACGTTCCCAGTTTCCTTTTCTT 59.620 43.478 0.00 0.00 0.00 2.52
3069 4711 4.021229 ACGTTCCCAGTTTCCTTTTCTTT 58.979 39.130 0.00 0.00 0.00 2.52
3070 4712 4.142249 ACGTTCCCAGTTTCCTTTTCTTTG 60.142 41.667 0.00 0.00 0.00 2.77
3071 4713 4.097286 CGTTCCCAGTTTCCTTTTCTTTGA 59.903 41.667 0.00 0.00 0.00 2.69
3072 4714 5.221244 CGTTCCCAGTTTCCTTTTCTTTGAT 60.221 40.000 0.00 0.00 0.00 2.57
3073 4715 5.789643 TCCCAGTTTCCTTTTCTTTGATG 57.210 39.130 0.00 0.00 0.00 3.07
3074 4716 5.208121 TCCCAGTTTCCTTTTCTTTGATGT 58.792 37.500 0.00 0.00 0.00 3.06
3075 4717 5.660864 TCCCAGTTTCCTTTTCTTTGATGTT 59.339 36.000 0.00 0.00 0.00 2.71
3076 4718 6.156083 TCCCAGTTTCCTTTTCTTTGATGTTT 59.844 34.615 0.00 0.00 0.00 2.83
3077 4719 6.823182 CCCAGTTTCCTTTTCTTTGATGTTTT 59.177 34.615 0.00 0.00 0.00 2.43
3078 4720 7.336679 CCCAGTTTCCTTTTCTTTGATGTTTTT 59.663 33.333 0.00 0.00 0.00 1.94
3079 4721 8.390354 CCAGTTTCCTTTTCTTTGATGTTTTTC 58.610 33.333 0.00 0.00 0.00 2.29
3080 4722 8.390354 CAGTTTCCTTTTCTTTGATGTTTTTCC 58.610 33.333 0.00 0.00 0.00 3.13
3081 4723 8.321353 AGTTTCCTTTTCTTTGATGTTTTTCCT 58.679 29.630 0.00 0.00 0.00 3.36
3082 4724 8.946085 GTTTCCTTTTCTTTGATGTTTTTCCTT 58.054 29.630 0.00 0.00 0.00 3.36
3083 4725 9.513906 TTTCCTTTTCTTTGATGTTTTTCCTTT 57.486 25.926 0.00 0.00 0.00 3.11
3084 4726 9.513906 TTCCTTTTCTTTGATGTTTTTCCTTTT 57.486 25.926 0.00 0.00 0.00 2.27
3088 4730 8.725405 TTTCTTTGATGTTTTTCCTTTTACCC 57.275 30.769 0.00 0.00 0.00 3.69
3089 4731 7.669089 TCTTTGATGTTTTTCCTTTTACCCT 57.331 32.000 0.00 0.00 0.00 4.34
3090 4732 7.722363 TCTTTGATGTTTTTCCTTTTACCCTC 58.278 34.615 0.00 0.00 0.00 4.30
3091 4733 7.563556 TCTTTGATGTTTTTCCTTTTACCCTCT 59.436 33.333 0.00 0.00 0.00 3.69
3092 4734 6.894339 TGATGTTTTTCCTTTTACCCTCTC 57.106 37.500 0.00 0.00 0.00 3.20
3093 4735 5.472137 TGATGTTTTTCCTTTTACCCTCTCG 59.528 40.000 0.00 0.00 0.00 4.04
3094 4736 4.139038 TGTTTTTCCTTTTACCCTCTCGG 58.861 43.478 0.00 0.00 37.81 4.63
3095 4737 4.141436 TGTTTTTCCTTTTACCCTCTCGGA 60.141 41.667 0.00 0.00 34.64 4.55
3096 4738 3.690475 TTTCCTTTTACCCTCTCGGAC 57.310 47.619 0.00 0.00 34.64 4.79
3097 4739 1.180029 TCCTTTTACCCTCTCGGACG 58.820 55.000 0.00 0.00 34.64 4.79
3098 4740 0.893447 CCTTTTACCCTCTCGGACGT 59.107 55.000 0.00 0.00 34.64 4.34
3099 4741 1.135170 CCTTTTACCCTCTCGGACGTC 60.135 57.143 7.13 7.13 34.64 4.34
3100 4742 0.523072 TTTTACCCTCTCGGACGTCG 59.477 55.000 9.92 5.26 40.90 5.12
3101 4743 0.606401 TTTACCCTCTCGGACGTCGT 60.606 55.000 9.92 0.00 40.32 4.34
3102 4744 0.249120 TTACCCTCTCGGACGTCGTA 59.751 55.000 9.92 1.24 40.32 3.43
3103 4745 0.465705 TACCCTCTCGGACGTCGTAT 59.534 55.000 9.92 0.00 40.32 3.06
3104 4746 1.094073 ACCCTCTCGGACGTCGTATG 61.094 60.000 9.92 0.00 40.32 2.39
3105 4747 1.009900 CCTCTCGGACGTCGTATGC 60.010 63.158 9.92 0.00 40.32 3.14
3106 4748 1.367782 CTCTCGGACGTCGTATGCG 60.368 63.158 9.92 7.15 40.32 4.73
3107 4749 3.017314 CTCGGACGTCGTATGCGC 61.017 66.667 9.92 0.00 40.32 6.09
3108 4750 4.541482 TCGGACGTCGTATGCGCC 62.541 66.667 9.92 0.00 40.32 6.53
3135 4777 4.585526 GATCGTGGGATGGCGCGA 62.586 66.667 12.10 0.00 37.76 5.87
3136 4778 3.865929 GATCGTGGGATGGCGCGAT 62.866 63.158 12.10 3.93 45.16 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 7.298507 CCAGATCTTTGGTGCAAAAATAATG 57.701 36.000 0.00 0.00 32.75 1.90
34 37 3.571401 AGTTTCTGCAACCAGATCTTTGG 59.429 43.478 8.80 4.59 46.84 3.28
37 40 3.070018 CGAGTTTCTGCAACCAGATCTT 58.930 45.455 0.00 0.00 46.84 2.40
41 44 1.939934 CAACGAGTTTCTGCAACCAGA 59.060 47.619 0.00 0.00 46.03 3.86
44 47 2.349532 GCTACAACGAGTTTCTGCAACC 60.350 50.000 0.00 0.00 35.77 3.77
52 55 2.288825 TGCTGCTAGCTACAACGAGTTT 60.289 45.455 17.23 0.00 42.97 2.66
55 58 1.923204 CTTGCTGCTAGCTACAACGAG 59.077 52.381 17.23 3.84 42.97 4.18
68 71 4.395583 GTGGTCGCTGCTTGCTGC 62.396 66.667 13.27 13.27 40.11 5.25
90 93 2.033602 ACCGGCCTTTCTTTCGGG 59.966 61.111 0.00 0.00 45.97 5.14
129 132 3.119096 GGAGCTGCGTTTCCCGTC 61.119 66.667 0.00 0.00 39.32 4.79
130 133 3.178540 AAGGAGCTGCGTTTCCCGT 62.179 57.895 0.00 0.00 39.32 5.28
131 134 2.358737 AAGGAGCTGCGTTTCCCG 60.359 61.111 0.00 0.00 40.40 5.14
132 135 2.982744 GCAAGGAGCTGCGTTTCCC 61.983 63.158 0.00 0.00 41.15 3.97
133 136 2.563427 GCAAGGAGCTGCGTTTCC 59.437 61.111 0.00 0.00 41.15 3.13
148 151 4.961511 GTGTCCGCGTCCACAGCA 62.962 66.667 17.40 0.00 34.19 4.41
168 171 1.450312 CGATGTCCCAAGGGAGCAC 60.450 63.158 8.41 0.00 46.16 4.40
173 176 1.526917 GCATCCGATGTCCCAAGGG 60.527 63.158 10.10 0.00 0.00 3.95
176 179 1.451927 GCTGCATCCGATGTCCCAA 60.452 57.895 10.10 0.00 0.00 4.12
177 180 2.190313 GCTGCATCCGATGTCCCA 59.810 61.111 10.10 0.00 0.00 4.37
183 186 0.249238 GAACTCGAGCTGCATCCGAT 60.249 55.000 13.61 0.00 0.00 4.18
184 187 1.139734 GAACTCGAGCTGCATCCGA 59.860 57.895 13.61 7.01 0.00 4.55
186 189 0.809241 CCTGAACTCGAGCTGCATCC 60.809 60.000 13.61 0.00 0.00 3.51
196 199 2.152699 CGCGCTACACCTGAACTCG 61.153 63.158 5.56 0.00 0.00 4.18
219 222 3.081133 CTCCGCAATGAACGTCGG 58.919 61.111 4.84 4.84 42.96 4.79
275 301 1.842381 CTCCTCCCAAGCTTCCCGTT 61.842 60.000 0.00 0.00 0.00 4.44
424 453 6.174720 TGGCTGTCGGATCTAATTCTTAAT 57.825 37.500 0.00 0.00 0.00 1.40
425 454 5.607939 TGGCTGTCGGATCTAATTCTTAA 57.392 39.130 0.00 0.00 0.00 1.85
433 462 1.133482 TCTCCATGGCTGTCGGATCTA 60.133 52.381 6.96 0.00 0.00 1.98
463 492 2.565391 ACCCGACCGATAATGATGCATA 59.435 45.455 0.00 0.00 0.00 3.14
511 540 8.365647 TCTTATTTTGAGACGGAAAGAGTAGTT 58.634 33.333 0.00 0.00 0.00 2.24
512 541 7.893658 TCTTATTTTGAGACGGAAAGAGTAGT 58.106 34.615 0.00 0.00 0.00 2.73
516 545 7.093992 AGACTCTTATTTTGAGACGGAAAGAG 58.906 38.462 7.45 7.45 42.52 2.85
517 546 6.994221 AGACTCTTATTTTGAGACGGAAAGA 58.006 36.000 0.00 0.00 35.66 2.52
518 547 6.868864 TGAGACTCTTATTTTGAGACGGAAAG 59.131 38.462 3.68 0.00 35.66 2.62
519 548 6.755206 TGAGACTCTTATTTTGAGACGGAAA 58.245 36.000 3.68 0.00 35.66 3.13
520 549 6.340962 TGAGACTCTTATTTTGAGACGGAA 57.659 37.500 3.68 0.00 35.66 4.30
521 550 5.977489 TGAGACTCTTATTTTGAGACGGA 57.023 39.130 3.68 0.00 35.66 4.69
522 551 6.159988 AGTTGAGACTCTTATTTTGAGACGG 58.840 40.000 3.68 0.00 35.66 4.79
523 552 7.644986 AAGTTGAGACTCTTATTTTGAGACG 57.355 36.000 3.68 0.00 34.21 4.18
524 553 8.831550 ACAAAGTTGAGACTCTTATTTTGAGAC 58.168 33.333 21.41 0.00 34.21 3.36
525 554 8.964476 ACAAAGTTGAGACTCTTATTTTGAGA 57.036 30.769 21.41 0.00 34.21 3.27
527 556 9.832445 AGTACAAAGTTGAGACTCTTATTTTGA 57.168 29.630 21.41 10.47 34.21 2.69
535 564 9.968870 CTAACTTTAGTACAAAGTTGAGACTCT 57.031 33.333 27.85 13.98 46.41 3.24
536 565 8.701540 GCTAACTTTAGTACAAAGTTGAGACTC 58.298 37.037 27.85 15.68 46.41 3.36
537 566 8.202137 TGCTAACTTTAGTACAAAGTTGAGACT 58.798 33.333 27.85 14.87 46.41 3.24
538 567 8.274248 GTGCTAACTTTAGTACAAAGTTGAGAC 58.726 37.037 27.85 21.02 46.41 3.36
539 568 8.361592 GTGCTAACTTTAGTACAAAGTTGAGA 57.638 34.615 27.85 16.97 46.41 3.27
549 578 7.791131 GTCGAAACTTTGTGCTAACTTTAGTAC 59.209 37.037 9.56 9.56 43.76 2.73
550 579 7.492020 TGTCGAAACTTTGTGCTAACTTTAGTA 59.508 33.333 0.00 0.00 33.32 1.82
551 580 6.314400 TGTCGAAACTTTGTGCTAACTTTAGT 59.686 34.615 0.00 0.00 33.32 2.24
552 581 6.711579 TGTCGAAACTTTGTGCTAACTTTAG 58.288 36.000 0.00 0.00 0.00 1.85
553 582 6.665474 TGTCGAAACTTTGTGCTAACTTTA 57.335 33.333 0.00 0.00 0.00 1.85
554 583 5.554822 TGTCGAAACTTTGTGCTAACTTT 57.445 34.783 0.00 0.00 0.00 2.66
555 584 5.751243 ATGTCGAAACTTTGTGCTAACTT 57.249 34.783 0.00 0.00 0.00 2.66
556 585 5.751243 AATGTCGAAACTTTGTGCTAACT 57.249 34.783 0.00 0.00 0.00 2.24
557 586 6.806120 AAAATGTCGAAACTTTGTGCTAAC 57.194 33.333 0.00 0.00 0.00 2.34
580 609 9.753674 AATCATATACTCCCTTTGTCTCAAAAA 57.246 29.630 0.00 0.00 0.00 1.94
646 675 8.628882 AATTTGTCTAAAAAGAAACTCCGTTG 57.371 30.769 0.00 0.00 0.00 4.10
647 676 9.726232 GTAATTTGTCTAAAAAGAAACTCCGTT 57.274 29.630 0.00 0.00 0.00 4.44
648 677 8.347771 GGTAATTTGTCTAAAAAGAAACTCCGT 58.652 33.333 0.00 0.00 0.00 4.69
649 678 8.347035 TGGTAATTTGTCTAAAAAGAAACTCCG 58.653 33.333 0.00 0.00 0.00 4.63
650 679 9.459640 GTGGTAATTTGTCTAAAAAGAAACTCC 57.540 33.333 0.00 0.00 0.00 3.85
651 680 9.459640 GGTGGTAATTTGTCTAAAAAGAAACTC 57.540 33.333 0.00 0.00 0.00 3.01
652 681 8.973182 TGGTGGTAATTTGTCTAAAAAGAAACT 58.027 29.630 0.00 0.00 0.00 2.66
653 682 9.589111 TTGGTGGTAATTTGTCTAAAAAGAAAC 57.411 29.630 0.00 0.00 0.00 2.78
654 683 9.589111 GTTGGTGGTAATTTGTCTAAAAAGAAA 57.411 29.630 0.00 0.00 0.00 2.52
655 684 7.916450 CGTTGGTGGTAATTTGTCTAAAAAGAA 59.084 33.333 0.00 0.00 0.00 2.52
656 685 7.419204 CGTTGGTGGTAATTTGTCTAAAAAGA 58.581 34.615 0.00 0.00 0.00 2.52
657 686 6.639279 CCGTTGGTGGTAATTTGTCTAAAAAG 59.361 38.462 0.00 0.00 0.00 2.27
658 687 6.320672 TCCGTTGGTGGTAATTTGTCTAAAAA 59.679 34.615 0.00 0.00 0.00 1.94
659 688 5.826737 TCCGTTGGTGGTAATTTGTCTAAAA 59.173 36.000 0.00 0.00 0.00 1.52
660 689 5.374921 TCCGTTGGTGGTAATTTGTCTAAA 58.625 37.500 0.00 0.00 0.00 1.85
661 690 4.970711 TCCGTTGGTGGTAATTTGTCTAA 58.029 39.130 0.00 0.00 0.00 2.10
662 691 4.040706 ACTCCGTTGGTGGTAATTTGTCTA 59.959 41.667 0.00 0.00 0.00 2.59
663 692 3.181448 ACTCCGTTGGTGGTAATTTGTCT 60.181 43.478 0.00 0.00 0.00 3.41
664 693 3.058501 CACTCCGTTGGTGGTAATTTGTC 60.059 47.826 0.00 0.00 0.00 3.18
665 694 2.882137 CACTCCGTTGGTGGTAATTTGT 59.118 45.455 0.00 0.00 0.00 2.83
666 695 2.227865 CCACTCCGTTGGTGGTAATTTG 59.772 50.000 9.57 0.00 46.42 2.32
667 696 2.510613 CCACTCCGTTGGTGGTAATTT 58.489 47.619 9.57 0.00 46.42 1.82
668 697 2.194201 CCACTCCGTTGGTGGTAATT 57.806 50.000 9.57 0.00 46.42 1.40
669 698 3.948735 CCACTCCGTTGGTGGTAAT 57.051 52.632 9.57 0.00 46.42 1.89
674 703 2.358737 GAGGCCACTCCGTTGGTG 60.359 66.667 5.01 0.00 39.09 4.17
715 744 1.145571 GGCAAGGACCCATACCCATA 58.854 55.000 0.00 0.00 0.00 2.74
717 746 2.675242 CGGCAAGGACCCATACCCA 61.675 63.158 0.00 0.00 0.00 4.51
718 747 2.192175 CGGCAAGGACCCATACCC 59.808 66.667 0.00 0.00 0.00 3.69
719 748 2.192175 CCGGCAAGGACCCATACC 59.808 66.667 0.00 0.00 45.00 2.73
720 749 1.153229 GACCGGCAAGGACCCATAC 60.153 63.158 0.00 0.00 45.00 2.39
721 750 3.316029 GACCGGCAAGGACCCATA 58.684 61.111 0.00 0.00 45.00 2.74
757 786 2.825836 CCATGGAAGGACGGCTGC 60.826 66.667 5.56 0.00 0.00 5.25
794 2379 0.958876 GCCCACCTACCGGAAAAGTG 60.959 60.000 9.46 10.08 0.00 3.16
797 2382 2.758434 GGCCCACCTACCGGAAAA 59.242 61.111 9.46 0.00 0.00 2.29
807 2394 2.107141 CTCTTCGATCGGCCCACC 59.893 66.667 16.41 0.00 0.00 4.61
828 2415 3.371595 GGTGGGACATAAGGCATAGTGTT 60.372 47.826 0.00 0.00 44.52 3.32
875 2462 1.999024 CGCACTGCAGGTTTTGTTTTT 59.001 42.857 19.93 0.00 0.00 1.94
876 2463 1.203523 TCGCACTGCAGGTTTTGTTTT 59.796 42.857 19.93 0.00 0.00 2.43
877 2464 0.814457 TCGCACTGCAGGTTTTGTTT 59.186 45.000 19.93 0.00 0.00 2.83
878 2465 1.032014 ATCGCACTGCAGGTTTTGTT 58.968 45.000 19.93 0.00 0.00 2.83
879 2466 1.001378 GAATCGCACTGCAGGTTTTGT 60.001 47.619 19.93 0.00 0.00 2.83
880 2467 1.689959 GAATCGCACTGCAGGTTTTG 58.310 50.000 19.93 8.24 0.00 2.44
881 2468 0.238289 CGAATCGCACTGCAGGTTTT 59.762 50.000 19.93 4.04 0.00 2.43
882 2469 1.577328 CCGAATCGCACTGCAGGTTT 61.577 55.000 19.93 3.66 0.00 3.27
883 2470 2.034879 CCGAATCGCACTGCAGGTT 61.035 57.895 19.93 4.52 0.00 3.50
884 2471 1.884075 TACCGAATCGCACTGCAGGT 61.884 55.000 19.93 6.18 0.00 4.00
885 2472 1.148157 CTACCGAATCGCACTGCAGG 61.148 60.000 19.93 8.27 0.00 4.85
886 2473 0.458543 ACTACCGAATCGCACTGCAG 60.459 55.000 13.48 13.48 0.00 4.41
887 2474 0.812549 TACTACCGAATCGCACTGCA 59.187 50.000 0.00 0.00 0.00 4.41
888 2475 1.197910 GTACTACCGAATCGCACTGC 58.802 55.000 0.00 0.00 0.00 4.40
889 2476 1.063027 TCGTACTACCGAATCGCACTG 59.937 52.381 0.00 0.00 33.15 3.66
890 2477 1.329906 CTCGTACTACCGAATCGCACT 59.670 52.381 0.00 0.00 36.24 4.40
891 2478 1.063174 ACTCGTACTACCGAATCGCAC 59.937 52.381 0.00 0.00 36.24 5.34
892 2479 1.328680 GACTCGTACTACCGAATCGCA 59.671 52.381 0.00 0.00 36.24 5.10
893 2480 1.333613 GGACTCGTACTACCGAATCGC 60.334 57.143 0.00 0.00 34.17 4.58
894 2481 2.208431 AGGACTCGTACTACCGAATCG 58.792 52.381 0.00 0.00 34.17 3.34
931 2518 2.424234 GGCCTATTTATTGCCCAGGACA 60.424 50.000 0.00 0.00 39.30 4.02
932 2519 2.239400 GGCCTATTTATTGCCCAGGAC 58.761 52.381 0.00 0.00 39.30 3.85
933 2520 1.202879 CGGCCTATTTATTGCCCAGGA 60.203 52.381 0.00 0.00 42.29 3.86
934 2521 1.202879 TCGGCCTATTTATTGCCCAGG 60.203 52.381 0.00 0.00 42.29 4.45
935 2522 2.270352 TCGGCCTATTTATTGCCCAG 57.730 50.000 0.00 0.00 42.29 4.45
936 2523 2.107378 TGATCGGCCTATTTATTGCCCA 59.893 45.455 0.00 0.00 42.29 5.36
940 2527 4.023193 GGTGGTTGATCGGCCTATTTATTG 60.023 45.833 0.00 0.00 0.00 1.90
1014 2601 2.174319 GCTCGCCGGAATCTTGTCC 61.174 63.158 5.05 0.00 0.00 4.02
1053 2640 5.751680 CCGGCTTTGATATGTTGTATGAAG 58.248 41.667 0.00 0.00 0.00 3.02
1089 2676 1.153489 CTCTGCGTGGATGGTCTGG 60.153 63.158 0.00 0.00 0.00 3.86
1093 2680 2.581354 GAGCTCTGCGTGGATGGT 59.419 61.111 6.43 0.00 0.00 3.55
1095 2682 1.227205 GAGGAGCTCTGCGTGGATG 60.227 63.158 14.64 0.00 0.00 3.51
1096 2683 2.430610 GGAGGAGCTCTGCGTGGAT 61.431 63.158 14.64 0.00 0.00 3.41
1099 2686 2.125753 GTGGAGGAGCTCTGCGTG 60.126 66.667 14.64 0.00 36.53 5.34
1100 2687 3.386237 GGTGGAGGAGCTCTGCGT 61.386 66.667 14.64 0.00 36.53 5.24
1101 2688 3.073735 AGGTGGAGGAGCTCTGCG 61.074 66.667 14.64 0.00 36.53 5.18
1104 2691 1.309688 GAGGAGGTGGAGGAGCTCT 59.690 63.158 14.64 0.00 46.73 4.09
1105 2692 2.124693 CGAGGAGGTGGAGGAGCTC 61.125 68.421 4.71 4.71 46.82 4.09
1106 2693 2.043450 CGAGGAGGTGGAGGAGCT 60.043 66.667 0.00 0.00 34.09 4.09
1107 2694 3.844090 GCGAGGAGGTGGAGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
1141 2730 4.736896 GTGGGTGTCGGCGGTCTC 62.737 72.222 7.21 1.80 0.00 3.36
1192 2781 3.551407 GAGGAGGTCGGGATGGCC 61.551 72.222 0.00 0.00 0.00 5.36
1193 2782 3.551407 GGAGGAGGTCGGGATGGC 61.551 72.222 0.00 0.00 0.00 4.40
1194 2783 2.041922 TGGAGGAGGTCGGGATGG 60.042 66.667 0.00 0.00 0.00 3.51
1195 2784 2.801631 GCTGGAGGAGGTCGGGATG 61.802 68.421 0.00 0.00 0.00 3.51
1196 2785 2.444895 GCTGGAGGAGGTCGGGAT 60.445 66.667 0.00 0.00 0.00 3.85
1236 2825 4.284550 GCTTGGTGGTGGCTGGGA 62.285 66.667 0.00 0.00 0.00 4.37
1260 2849 3.308705 GGGTCTTCACGGACGGGT 61.309 66.667 0.00 0.00 37.12 5.28
1389 2978 1.107114 CCAGGAGCATGTCGTAGAGT 58.893 55.000 0.00 0.00 36.95 3.24
1416 3005 1.676014 CCCTCCATCTCCACGTTGAAC 60.676 57.143 0.00 0.00 0.00 3.18
1463 3052 1.003718 AAAACCTCGAGGGCCTTCG 60.004 57.895 34.04 29.86 41.79 3.79
1491 3080 3.522731 CGGAGGAGAGGGCTGTCG 61.523 72.222 0.00 0.00 0.00 4.35
1512 3101 1.738099 CGGCAGGAACTCCGTGAAG 60.738 63.158 0.00 0.00 41.67 3.02
1541 3130 2.027625 GTCAGAAAGTCACGCCCGG 61.028 63.158 0.00 0.00 0.00 5.73
1641 3230 4.629523 TCGGCGCGGGGTTTCTTT 62.630 61.111 15.48 0.00 0.00 2.52
1676 3265 3.753434 CGGAGACACTGCCGCTCT 61.753 66.667 0.00 0.00 41.17 4.09
1686 3287 1.588082 GTCCCTAAACGCGGAGACA 59.412 57.895 12.47 0.00 0.00 3.41
1725 3326 1.226717 GACCGCCAGCTTCGAGTAG 60.227 63.158 6.70 0.00 0.00 2.57
1749 3350 0.391263 GGGATTTCTCGGTGCGTCTT 60.391 55.000 0.00 0.00 0.00 3.01
1758 3359 1.484240 AGCTCTTCCAGGGATTTCTCG 59.516 52.381 0.00 0.00 0.00 4.04
1767 3368 1.892819 TTGGCTCGAGCTCTTCCAGG 61.893 60.000 34.46 0.00 41.70 4.45
1773 3374 1.612395 CCTTCCTTGGCTCGAGCTCT 61.612 60.000 34.46 0.00 41.70 4.09
1776 3377 1.153469 CTCCTTCCTTGGCTCGAGC 60.153 63.158 29.38 29.38 41.14 5.03
1780 3381 1.448717 GCGACTCCTTCCTTGGCTC 60.449 63.158 0.00 0.00 0.00 4.70
1790 3391 1.596895 GACTTCTTCCGGCGACTCCT 61.597 60.000 9.30 0.00 0.00 3.69
1848 3458 0.737715 GGTAGAGTTGCTCCAGCGTG 60.738 60.000 0.00 0.00 45.83 5.34
1860 3470 4.753662 TCGCGGCCAGGGTAGAGT 62.754 66.667 6.13 0.00 0.00 3.24
1960 3570 4.865761 TATCGTCCGCAGCGCCAC 62.866 66.667 10.07 7.18 0.00 5.01
1970 3580 1.595382 AGCCTGCGCAATATCGTCC 60.595 57.895 13.05 0.00 37.52 4.79
1991 3601 2.435586 CCACCTGCTCCAGCTTCG 60.436 66.667 0.00 0.00 42.66 3.79
1998 3608 4.329545 TTCACGGCCACCTGCTCC 62.330 66.667 2.24 0.00 40.92 4.70
2046 3656 3.685214 CTTCACTCGGGCCTCGACG 62.685 68.421 11.66 10.48 43.74 5.12
2049 3659 3.764466 AGCTTCACTCGGGCCTCG 61.764 66.667 0.84 4.76 40.90 4.63
2065 3675 1.416813 CGCCGCTCTAAGACAAGCAG 61.417 60.000 0.00 0.00 38.45 4.24
2066 3676 1.446099 CGCCGCTCTAAGACAAGCA 60.446 57.895 0.00 0.00 38.45 3.91
2103 3719 0.326595 TAAGCTTGTTCATCCCGCCA 59.673 50.000 9.86 0.00 0.00 5.69
2115 3731 6.036517 CAGGCTACAACTCTACATTAAGCTTG 59.963 42.308 9.86 0.00 31.04 4.01
2130 3746 0.949105 CCACACGGTCAGGCTACAAC 60.949 60.000 0.00 0.00 0.00 3.32
2132 3748 1.835267 ACCACACGGTCAGGCTACA 60.835 57.895 0.00 0.00 44.71 2.74
2133 3749 1.374252 CACCACACGGTCAGGCTAC 60.374 63.158 0.00 0.00 44.71 3.58
2135 3751 3.941188 CCACCACACGGTCAGGCT 61.941 66.667 0.00 0.00 44.71 4.58
2136 3752 3.767630 AACCACCACACGGTCAGGC 62.768 63.158 0.00 0.00 44.71 4.85
2137 3753 1.597027 GAACCACCACACGGTCAGG 60.597 63.158 0.00 0.00 44.71 3.86
2138 3754 0.179056 AAGAACCACCACACGGTCAG 60.179 55.000 0.00 0.00 44.71 3.51
2139 3755 0.179067 GAAGAACCACCACACGGTCA 60.179 55.000 0.00 0.00 44.71 4.02
2242 3859 6.715344 TTAACGTCTCAAAGCAACGATAAT 57.285 33.333 0.71 0.00 39.59 1.28
2298 3915 2.919666 AAATCGACGGCCAAGAAATG 57.080 45.000 2.24 0.00 0.00 2.32
2299 3916 3.574614 CAAAAATCGACGGCCAAGAAAT 58.425 40.909 2.24 0.00 0.00 2.17
2300 3917 2.860582 GCAAAAATCGACGGCCAAGAAA 60.861 45.455 2.24 0.00 0.00 2.52
2301 3918 1.335506 GCAAAAATCGACGGCCAAGAA 60.336 47.619 2.24 0.00 0.00 2.52
2302 3919 0.239879 GCAAAAATCGACGGCCAAGA 59.760 50.000 2.24 0.00 0.00 3.02
2303 3920 0.240945 AGCAAAAATCGACGGCCAAG 59.759 50.000 2.24 0.00 0.00 3.61
2304 3921 0.239879 GAGCAAAAATCGACGGCCAA 59.760 50.000 2.24 0.00 0.00 4.52
2305 3922 0.605319 AGAGCAAAAATCGACGGCCA 60.605 50.000 2.24 0.00 0.00 5.36
2306 3923 0.179189 CAGAGCAAAAATCGACGGCC 60.179 55.000 0.00 0.00 0.00 6.13
2307 3924 0.796312 TCAGAGCAAAAATCGACGGC 59.204 50.000 0.00 0.00 0.00 5.68
2308 3925 2.337583 TCTCAGAGCAAAAATCGACGG 58.662 47.619 0.00 0.00 0.00 4.79
2309 3926 4.590400 AATCTCAGAGCAAAAATCGACG 57.410 40.909 0.00 0.00 0.00 5.12
2310 3927 5.566774 CACAAATCTCAGAGCAAAAATCGAC 59.433 40.000 0.00 0.00 0.00 4.20
2311 3928 5.692814 CACAAATCTCAGAGCAAAAATCGA 58.307 37.500 0.00 0.00 0.00 3.59
2312 3929 4.322804 GCACAAATCTCAGAGCAAAAATCG 59.677 41.667 0.00 0.00 0.00 3.34
2313 3930 5.345202 CAGCACAAATCTCAGAGCAAAAATC 59.655 40.000 0.00 0.00 0.00 2.17
2314 3931 5.227908 CAGCACAAATCTCAGAGCAAAAAT 58.772 37.500 0.00 0.00 0.00 1.82
2315 3932 4.613944 CAGCACAAATCTCAGAGCAAAAA 58.386 39.130 0.00 0.00 0.00 1.94
2316 3933 3.551454 GCAGCACAAATCTCAGAGCAAAA 60.551 43.478 0.00 0.00 0.00 2.44
2317 3934 2.030540 GCAGCACAAATCTCAGAGCAAA 60.031 45.455 0.00 0.00 0.00 3.68
2318 3935 1.538512 GCAGCACAAATCTCAGAGCAA 59.461 47.619 0.00 0.00 0.00 3.91
2319 3936 1.162698 GCAGCACAAATCTCAGAGCA 58.837 50.000 0.00 0.00 0.00 4.26
2320 3937 1.162698 TGCAGCACAAATCTCAGAGC 58.837 50.000 0.00 0.00 0.00 4.09
2321 3938 4.436242 AAATGCAGCACAAATCTCAGAG 57.564 40.909 0.00 0.00 0.00 3.35
2322 3939 4.859304 AAAATGCAGCACAAATCTCAGA 57.141 36.364 0.00 0.00 0.00 3.27
2323 3940 5.227908 AGAAAAATGCAGCACAAATCTCAG 58.772 37.500 0.00 0.00 0.00 3.35
2324 3941 5.204409 AGAAAAATGCAGCACAAATCTCA 57.796 34.783 0.00 0.00 0.00 3.27
2325 3942 5.574443 GGTAGAAAAATGCAGCACAAATCTC 59.426 40.000 0.00 0.00 0.00 2.75
2326 3943 5.244626 AGGTAGAAAAATGCAGCACAAATCT 59.755 36.000 0.00 2.43 0.00 2.40
2327 3944 5.473039 AGGTAGAAAAATGCAGCACAAATC 58.527 37.500 0.00 0.00 0.00 2.17
2328 3945 5.473066 AGGTAGAAAAATGCAGCACAAAT 57.527 34.783 0.00 0.00 0.00 2.32
2329 3946 4.935352 AGGTAGAAAAATGCAGCACAAA 57.065 36.364 0.00 0.00 0.00 2.83
2330 3947 4.935352 AAGGTAGAAAAATGCAGCACAA 57.065 36.364 0.00 0.00 0.00 3.33
2331 3948 4.935352 AAAGGTAGAAAAATGCAGCACA 57.065 36.364 0.00 0.00 0.00 4.57
2332 3949 6.868339 ACAATAAAGGTAGAAAAATGCAGCAC 59.132 34.615 0.00 0.00 0.00 4.40
2333 3950 6.991938 ACAATAAAGGTAGAAAAATGCAGCA 58.008 32.000 0.00 0.00 0.00 4.41
2334 3951 7.201350 CGAACAATAAAGGTAGAAAAATGCAGC 60.201 37.037 0.00 0.00 0.00 5.25
2335 3952 7.273381 CCGAACAATAAAGGTAGAAAAATGCAG 59.727 37.037 0.00 0.00 0.00 4.41
2336 3953 7.040340 TCCGAACAATAAAGGTAGAAAAATGCA 60.040 33.333 0.00 0.00 0.00 3.96
2337 3954 7.309920 TCCGAACAATAAAGGTAGAAAAATGC 58.690 34.615 0.00 0.00 0.00 3.56
2338 3955 9.855021 AATCCGAACAATAAAGGTAGAAAAATG 57.145 29.630 0.00 0.00 0.00 2.32
2340 3957 9.685828 CAAATCCGAACAATAAAGGTAGAAAAA 57.314 29.630 0.00 0.00 0.00 1.94
2341 3958 7.810759 GCAAATCCGAACAATAAAGGTAGAAAA 59.189 33.333 0.00 0.00 0.00 2.29
2342 3959 7.175990 AGCAAATCCGAACAATAAAGGTAGAAA 59.824 33.333 0.00 0.00 0.00 2.52
2343 3960 6.657541 AGCAAATCCGAACAATAAAGGTAGAA 59.342 34.615 0.00 0.00 0.00 2.10
2344 3961 6.177610 AGCAAATCCGAACAATAAAGGTAGA 58.822 36.000 0.00 0.00 0.00 2.59
2345 3962 6.436843 AGCAAATCCGAACAATAAAGGTAG 57.563 37.500 0.00 0.00 0.00 3.18
2346 3963 8.514330 AATAGCAAATCCGAACAATAAAGGTA 57.486 30.769 0.00 0.00 0.00 3.08
2347 3964 7.404671 AATAGCAAATCCGAACAATAAAGGT 57.595 32.000 0.00 0.00 0.00 3.50
2348 3965 8.702163 AAAATAGCAAATCCGAACAATAAAGG 57.298 30.769 0.00 0.00 0.00 3.11
2351 3968 9.781834 CTGTAAAATAGCAAATCCGAACAATAA 57.218 29.630 0.00 0.00 0.00 1.40
2352 3969 8.952278 ACTGTAAAATAGCAAATCCGAACAATA 58.048 29.630 0.00 0.00 0.00 1.90
2353 3970 7.826690 ACTGTAAAATAGCAAATCCGAACAAT 58.173 30.769 0.00 0.00 0.00 2.71
2354 3971 7.041030 TGACTGTAAAATAGCAAATCCGAACAA 60.041 33.333 0.00 0.00 0.00 2.83
2355 3972 6.428465 TGACTGTAAAATAGCAAATCCGAACA 59.572 34.615 0.00 0.00 0.00 3.18
2356 3973 6.837992 TGACTGTAAAATAGCAAATCCGAAC 58.162 36.000 0.00 0.00 0.00 3.95
2380 3997 9.180678 GAATGTTGACGAATTTGAATAACAGTT 57.819 29.630 0.00 0.00 31.16 3.16
2393 4010 4.406069 CAGCGATTTGAATGTTGACGAAT 58.594 39.130 0.00 0.00 0.00 3.34
2434 4051 1.639298 GACAGCCAAGCGCGAATCTT 61.639 55.000 12.10 0.00 44.76 2.40
2484 4102 2.114411 GGGCTGGGACAAAACCGA 59.886 61.111 0.00 0.00 38.70 4.69
2513 4133 2.879490 TGGAAGAGGGGAGGGGGA 60.879 66.667 0.00 0.00 0.00 4.81
2528 4149 4.687901 AATGAAAGGGGACAAAAACTGG 57.312 40.909 0.00 0.00 0.00 4.00
2532 4153 4.163078 TGCTCAAATGAAAGGGGACAAAAA 59.837 37.500 0.00 0.00 0.00 1.94
2555 4195 2.890311 CTCTATCTTCCTCGCATCCACT 59.110 50.000 0.00 0.00 0.00 4.00
2556 4196 2.029470 CCTCTATCTTCCTCGCATCCAC 60.029 54.545 0.00 0.00 0.00 4.02
2557 4197 2.158460 TCCTCTATCTTCCTCGCATCCA 60.158 50.000 0.00 0.00 0.00 3.41
2558 4198 2.520069 TCCTCTATCTTCCTCGCATCC 58.480 52.381 0.00 0.00 0.00 3.51
2559 4199 3.319405 TGTTCCTCTATCTTCCTCGCATC 59.681 47.826 0.00 0.00 0.00 3.91
2560 4200 3.300388 TGTTCCTCTATCTTCCTCGCAT 58.700 45.455 0.00 0.00 0.00 4.73
2561 4201 2.735151 TGTTCCTCTATCTTCCTCGCA 58.265 47.619 0.00 0.00 0.00 5.10
2562 4202 3.712187 CTTGTTCCTCTATCTTCCTCGC 58.288 50.000 0.00 0.00 0.00 5.03
2563 4203 3.712187 GCTTGTTCCTCTATCTTCCTCG 58.288 50.000 0.00 0.00 0.00 4.63
2568 4208 3.265791 CAAGCGCTTGTTCCTCTATCTT 58.734 45.455 36.23 1.95 35.92 2.40
2582 4222 2.043652 ATCCATTGCCCAAGCGCT 60.044 55.556 2.64 2.64 44.31 5.92
2594 4234 3.287867 ACAGAAAGGAATCGCATCCAT 57.712 42.857 8.72 0.00 42.27 3.41
2622 4262 0.623324 TGGTGGGGGATCTCGGAATT 60.623 55.000 0.00 0.00 0.00 2.17
2688 4328 5.388654 AGAAATTGAGAGACCAACCAACAT 58.611 37.500 0.00 0.00 0.00 2.71
2730 4370 3.123621 GCTACACACCGAGAAATGAACAG 59.876 47.826 0.00 0.00 0.00 3.16
2825 4465 4.637276 ACCATGAATCTACAACAACACGA 58.363 39.130 0.00 0.00 0.00 4.35
2885 4527 0.953471 CAAGGAACGATGGCGGACAA 60.953 55.000 0.00 0.00 43.17 3.18
2935 4577 3.555139 CACTTGCATGAGCTTAGTAGAGC 59.445 47.826 6.60 0.00 42.74 4.09
2936 4578 3.555139 GCACTTGCATGAGCTTAGTAGAG 59.445 47.826 13.54 0.00 42.74 2.43
2937 4579 3.196469 AGCACTTGCATGAGCTTAGTAGA 59.804 43.478 16.91 0.00 45.16 2.59
2938 4580 3.529533 AGCACTTGCATGAGCTTAGTAG 58.470 45.455 16.91 0.00 45.16 2.57
2939 4581 3.616956 AGCACTTGCATGAGCTTAGTA 57.383 42.857 16.91 0.00 45.16 1.82
2940 4582 2.486472 AGCACTTGCATGAGCTTAGT 57.514 45.000 16.91 0.00 45.16 2.24
2941 4583 2.871022 CCTAGCACTTGCATGAGCTTAG 59.129 50.000 25.11 19.02 45.16 2.18
2942 4584 2.501316 TCCTAGCACTTGCATGAGCTTA 59.499 45.455 25.11 11.81 45.16 3.09
2943 4585 1.280133 TCCTAGCACTTGCATGAGCTT 59.720 47.619 25.11 12.45 45.16 3.74
2944 4586 0.907486 TCCTAGCACTTGCATGAGCT 59.093 50.000 23.84 23.84 45.16 4.09
2945 4587 1.964552 ATCCTAGCACTTGCATGAGC 58.035 50.000 13.04 13.04 45.16 4.26
2946 4588 5.530171 ACAAATATCCTAGCACTTGCATGAG 59.470 40.000 6.60 0.00 45.16 2.90
2947 4589 5.439721 ACAAATATCCTAGCACTTGCATGA 58.560 37.500 6.60 0.00 45.16 3.07
2948 4590 5.762825 ACAAATATCCTAGCACTTGCATG 57.237 39.130 3.62 0.00 45.16 4.06
2949 4591 6.780457 AAACAAATATCCTAGCACTTGCAT 57.220 33.333 3.62 0.00 45.16 3.96
2950 4592 6.434028 AGAAAACAAATATCCTAGCACTTGCA 59.566 34.615 3.62 0.00 45.16 4.08
2951 4593 6.749118 CAGAAAACAAATATCCTAGCACTTGC 59.251 38.462 0.00 0.00 42.49 4.01
2952 4594 7.820648 ACAGAAAACAAATATCCTAGCACTTG 58.179 34.615 0.00 0.00 0.00 3.16
2953 4595 8.299570 CAACAGAAAACAAATATCCTAGCACTT 58.700 33.333 0.00 0.00 0.00 3.16
2954 4596 7.665559 TCAACAGAAAACAAATATCCTAGCACT 59.334 33.333 0.00 0.00 0.00 4.40
2955 4597 7.816640 TCAACAGAAAACAAATATCCTAGCAC 58.183 34.615 0.00 0.00 0.00 4.40
2956 4598 7.994425 TCAACAGAAAACAAATATCCTAGCA 57.006 32.000 0.00 0.00 0.00 3.49
2964 4606 9.243637 GCAGTGTTATTCAACAGAAAACAAATA 57.756 29.630 0.00 0.00 45.18 1.40
2965 4607 7.763528 TGCAGTGTTATTCAACAGAAAACAAAT 59.236 29.630 0.00 0.00 45.18 2.32
2966 4608 7.093354 TGCAGTGTTATTCAACAGAAAACAAA 58.907 30.769 0.00 0.00 45.18 2.83
2967 4609 6.625362 TGCAGTGTTATTCAACAGAAAACAA 58.375 32.000 0.00 0.00 45.18 2.83
2968 4610 6.201226 TGCAGTGTTATTCAACAGAAAACA 57.799 33.333 0.00 0.00 45.18 2.83
2969 4611 6.346040 GCATGCAGTGTTATTCAACAGAAAAC 60.346 38.462 14.21 0.00 45.18 2.43
2970 4612 5.691305 GCATGCAGTGTTATTCAACAGAAAA 59.309 36.000 14.21 0.00 45.18 2.29
2971 4613 5.221204 TGCATGCAGTGTTATTCAACAGAAA 60.221 36.000 18.46 0.00 45.18 2.52
2972 4614 4.277921 TGCATGCAGTGTTATTCAACAGAA 59.722 37.500 18.46 0.00 45.18 3.02
2973 4615 3.819902 TGCATGCAGTGTTATTCAACAGA 59.180 39.130 18.46 0.00 45.18 3.41
2974 4616 3.916172 GTGCATGCAGTGTTATTCAACAG 59.084 43.478 23.41 0.00 45.18 3.16
2975 4617 3.608941 CGTGCATGCAGTGTTATTCAACA 60.609 43.478 23.41 0.00 42.39 3.33
2976 4618 2.910482 CGTGCATGCAGTGTTATTCAAC 59.090 45.455 23.41 3.34 35.06 3.18
2977 4619 2.810852 TCGTGCATGCAGTGTTATTCAA 59.189 40.909 23.41 0.00 0.00 2.69
2978 4620 2.421619 TCGTGCATGCAGTGTTATTCA 58.578 42.857 23.41 0.00 0.00 2.57
2979 4621 3.680642 ATCGTGCATGCAGTGTTATTC 57.319 42.857 23.41 5.54 0.00 1.75
2980 4622 3.439825 TCAATCGTGCATGCAGTGTTATT 59.560 39.130 23.41 13.05 0.00 1.40
2981 4623 3.009026 TCAATCGTGCATGCAGTGTTAT 58.991 40.909 23.41 7.46 0.00 1.89
2982 4624 2.421619 TCAATCGTGCATGCAGTGTTA 58.578 42.857 23.41 5.19 0.00 2.41
2983 4625 1.237533 TCAATCGTGCATGCAGTGTT 58.762 45.000 23.41 12.88 0.00 3.32
2984 4626 1.131693 CATCAATCGTGCATGCAGTGT 59.868 47.619 23.41 6.73 0.00 3.55
2985 4627 1.131693 ACATCAATCGTGCATGCAGTG 59.868 47.619 23.41 17.09 0.00 3.66
2986 4628 1.131693 CACATCAATCGTGCATGCAGT 59.868 47.619 23.41 10.05 0.00 4.40
2987 4629 1.399089 TCACATCAATCGTGCATGCAG 59.601 47.619 23.41 15.31 34.27 4.41
2988 4630 1.130938 GTCACATCAATCGTGCATGCA 59.869 47.619 18.46 18.46 34.27 3.96
2989 4631 1.818850 GTCACATCAATCGTGCATGC 58.181 50.000 11.82 11.82 34.27 4.06
2990 4632 1.394572 ACGTCACATCAATCGTGCATG 59.605 47.619 0.00 0.00 35.24 4.06
2991 4633 1.394572 CACGTCACATCAATCGTGCAT 59.605 47.619 3.81 0.00 44.71 3.96
2992 4634 0.789601 CACGTCACATCAATCGTGCA 59.210 50.000 3.81 0.00 44.71 4.57
2993 4635 3.568181 CACGTCACATCAATCGTGC 57.432 52.632 3.81 0.00 44.71 5.34
2995 4637 1.019278 GGGCACGTCACATCAATCGT 61.019 55.000 0.00 0.00 36.99 3.73
2996 4638 1.018752 TGGGCACGTCACATCAATCG 61.019 55.000 0.00 0.00 0.00 3.34
2997 4639 1.064505 CATGGGCACGTCACATCAATC 59.935 52.381 0.51 0.00 0.00 2.67
2998 4640 1.097232 CATGGGCACGTCACATCAAT 58.903 50.000 0.51 0.00 0.00 2.57
2999 4641 1.585267 GCATGGGCACGTCACATCAA 61.585 55.000 0.00 0.00 40.72 2.57
3000 4642 2.039974 GCATGGGCACGTCACATCA 61.040 57.895 0.00 0.00 40.72 3.07
3001 4643 2.793946 GCATGGGCACGTCACATC 59.206 61.111 0.00 0.00 40.72 3.06
3011 4653 1.025041 GCCTAACTACTTGCATGGGC 58.975 55.000 4.44 0.00 41.68 5.36
3012 4654 1.299541 CGCCTAACTACTTGCATGGG 58.700 55.000 4.44 0.00 0.00 4.00
3013 4655 1.299541 CCGCCTAACTACTTGCATGG 58.700 55.000 4.44 0.00 0.00 3.66
3014 4656 1.134521 TCCCGCCTAACTACTTGCATG 60.135 52.381 0.00 0.00 0.00 4.06
3015 4657 1.200519 TCCCGCCTAACTACTTGCAT 58.799 50.000 0.00 0.00 0.00 3.96
3016 4658 0.978151 TTCCCGCCTAACTACTTGCA 59.022 50.000 0.00 0.00 0.00 4.08
3017 4659 1.066358 ACTTCCCGCCTAACTACTTGC 60.066 52.381 0.00 0.00 0.00 4.01
3018 4660 2.618053 CACTTCCCGCCTAACTACTTG 58.382 52.381 0.00 0.00 0.00 3.16
3019 4661 1.066358 GCACTTCCCGCCTAACTACTT 60.066 52.381 0.00 0.00 0.00 2.24
3020 4662 0.535797 GCACTTCCCGCCTAACTACT 59.464 55.000 0.00 0.00 0.00 2.57
3021 4663 0.804933 CGCACTTCCCGCCTAACTAC 60.805 60.000 0.00 0.00 0.00 2.73
3022 4664 1.514087 CGCACTTCCCGCCTAACTA 59.486 57.895 0.00 0.00 0.00 2.24
3023 4665 2.264794 CGCACTTCCCGCCTAACT 59.735 61.111 0.00 0.00 0.00 2.24
3024 4666 3.497031 GCGCACTTCCCGCCTAAC 61.497 66.667 0.30 0.00 45.30 2.34
3038 4680 2.813179 CTGGGAACGTGCATAGCGC 61.813 63.158 0.00 0.00 42.89 5.92
3039 4681 1.019278 AACTGGGAACGTGCATAGCG 61.019 55.000 0.00 0.00 0.00 4.26
3040 4682 1.130561 GAAACTGGGAACGTGCATAGC 59.869 52.381 0.00 0.00 0.00 2.97
3041 4683 1.737793 GGAAACTGGGAACGTGCATAG 59.262 52.381 0.00 0.00 0.00 2.23
3042 4684 1.349688 AGGAAACTGGGAACGTGCATA 59.650 47.619 0.00 0.00 41.13 3.14
3043 4685 0.110486 AGGAAACTGGGAACGTGCAT 59.890 50.000 0.00 0.00 41.13 3.96
3044 4686 0.106918 AAGGAAACTGGGAACGTGCA 60.107 50.000 0.00 0.00 42.68 4.57
3045 4687 1.029681 AAAGGAAACTGGGAACGTGC 58.970 50.000 0.00 0.00 42.68 5.34
3046 4688 2.949644 AGAAAAGGAAACTGGGAACGTG 59.050 45.455 0.00 0.00 42.68 4.49
3047 4689 3.292492 AGAAAAGGAAACTGGGAACGT 57.708 42.857 0.00 0.00 42.68 3.99
3048 4690 4.097286 TCAAAGAAAAGGAAACTGGGAACG 59.903 41.667 0.00 0.00 42.68 3.95
3049 4691 5.592104 TCAAAGAAAAGGAAACTGGGAAC 57.408 39.130 0.00 0.00 42.68 3.62
3050 4692 5.660864 ACATCAAAGAAAAGGAAACTGGGAA 59.339 36.000 0.00 0.00 42.68 3.97
3051 4693 5.208121 ACATCAAAGAAAAGGAAACTGGGA 58.792 37.500 0.00 0.00 42.68 4.37
3052 4694 5.535753 ACATCAAAGAAAAGGAAACTGGG 57.464 39.130 0.00 0.00 42.68 4.45
3053 4695 7.848223 AAAACATCAAAGAAAAGGAAACTGG 57.152 32.000 0.00 0.00 42.68 4.00
3054 4696 8.390354 GGAAAAACATCAAAGAAAAGGAAACTG 58.610 33.333 0.00 0.00 42.68 3.16
3056 4698 8.492673 AGGAAAAACATCAAAGAAAAGGAAAC 57.507 30.769 0.00 0.00 0.00 2.78
3057 4699 9.513906 AAAGGAAAAACATCAAAGAAAAGGAAA 57.486 25.926 0.00 0.00 0.00 3.13
3058 4700 9.513906 AAAAGGAAAAACATCAAAGAAAAGGAA 57.486 25.926 0.00 0.00 0.00 3.36
3062 4704 9.168451 GGGTAAAAGGAAAAACATCAAAGAAAA 57.832 29.630 0.00 0.00 0.00 2.29
3063 4705 8.544622 AGGGTAAAAGGAAAAACATCAAAGAAA 58.455 29.630 0.00 0.00 0.00 2.52
3064 4706 8.084985 AGGGTAAAAGGAAAAACATCAAAGAA 57.915 30.769 0.00 0.00 0.00 2.52
3065 4707 7.563556 AGAGGGTAAAAGGAAAAACATCAAAGA 59.436 33.333 0.00 0.00 0.00 2.52
3066 4708 7.726216 AGAGGGTAAAAGGAAAAACATCAAAG 58.274 34.615 0.00 0.00 0.00 2.77
3067 4709 7.469456 CGAGAGGGTAAAAGGAAAAACATCAAA 60.469 37.037 0.00 0.00 0.00 2.69
3068 4710 6.016610 CGAGAGGGTAAAAGGAAAAACATCAA 60.017 38.462 0.00 0.00 0.00 2.57
3069 4711 5.472137 CGAGAGGGTAAAAGGAAAAACATCA 59.528 40.000 0.00 0.00 0.00 3.07
3070 4712 5.939457 CGAGAGGGTAAAAGGAAAAACATC 58.061 41.667 0.00 0.00 0.00 3.06
3071 4713 5.959618 CGAGAGGGTAAAAGGAAAAACAT 57.040 39.130 0.00 0.00 0.00 2.71
3088 4730 1.367782 CGCATACGACGTCCGAGAG 60.368 63.158 10.58 0.00 43.93 3.20
3089 4731 2.705220 CGCATACGACGTCCGAGA 59.295 61.111 10.58 0.28 43.93 4.04
3090 4732 3.017314 GCGCATACGACGTCCGAG 61.017 66.667 10.58 0.00 43.93 4.63
3091 4733 4.541482 GGCGCATACGACGTCCGA 62.541 66.667 10.83 0.00 43.93 4.55
3118 4760 3.865929 ATCGCGCCATCCCACGATC 62.866 63.158 0.00 0.00 41.06 3.69
3119 4761 3.928779 ATCGCGCCATCCCACGAT 61.929 61.111 0.00 0.00 40.22 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.