Multiple sequence alignment - TraesCS4A01G365700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G365700 chr4A 100.000 2580 0 0 1 2580 639054486 639057065 0.000000e+00 4765
1 TraesCS4A01G365700 chr4A 84.196 715 74 23 964 1665 639041215 639041903 0.000000e+00 658
2 TraesCS4A01G365700 chr4A 84.196 715 74 23 964 1665 639043092 639043780 0.000000e+00 658
3 TraesCS4A01G365700 chr4A 91.436 362 26 4 1218 1578 639048445 639048802 2.310000e-135 492
4 TraesCS4A01G365700 chr4A 96.774 155 2 3 515 667 2399658 2399811 3.290000e-64 255
5 TraesCS4A01G365700 chr4A 84.091 176 14 6 936 1110 639048281 639048443 9.560000e-35 158
6 TraesCS4A01G365700 chr5D 87.808 812 44 29 865 1651 532745344 532744563 0.000000e+00 900
7 TraesCS4A01G365700 chr5D 90.073 685 23 20 1023 1682 532819799 532819135 0.000000e+00 846
8 TraesCS4A01G365700 chr5D 85.754 716 68 21 964 1665 533006133 533005438 0.000000e+00 726
9 TraesCS4A01G365700 chr5D 87.521 585 53 11 1837 2420 532744486 532743921 0.000000e+00 658
10 TraesCS4A01G365700 chr5D 90.331 362 30 4 1218 1578 533000591 533000234 1.080000e-128 470
11 TraesCS4A01G365700 chr5D 81.443 388 24 17 138 521 532745985 532745642 9.100000e-70 274
12 TraesCS4A01G365700 chr5D 93.168 161 9 2 2421 2580 501073553 501073394 4.290000e-58 235
13 TraesCS4A01G365700 chr5D 90.588 170 15 1 24 193 532822169 532822001 9.290000e-55 224
14 TraesCS4A01G365700 chr5D 91.045 134 8 1 790 919 532745484 532745351 7.340000e-41 178
15 TraesCS4A01G365700 chr5D 85.333 150 11 5 962 1110 533000732 533000593 7.440000e-31 145
16 TraesCS4A01G365700 chr5B 88.351 661 26 26 1023 1651 672865703 672865062 0.000000e+00 747
17 TraesCS4A01G365700 chr5B 84.874 714 75 19 964 1662 673036449 673035754 0.000000e+00 689
18 TraesCS4A01G365700 chr5B 87.805 328 20 5 18 325 672866753 672866426 1.460000e-97 366
19 TraesCS4A01G365700 chr5B 83.278 299 27 12 790 1075 672865990 672865702 1.180000e-63 254
20 TraesCS4A01G365700 chr5B 94.483 145 4 2 522 666 358616930 358617070 1.200000e-53 220
21 TraesCS4A01G365700 chr5B 89.423 104 7 2 418 521 672866240 672866141 7.490000e-26 128
22 TraesCS4A01G365700 chr5B 84.000 125 12 3 667 788 672866147 672866028 2.100000e-21 113
23 TraesCS4A01G365700 chr4B 100.000 148 0 0 520 667 73100640 73100493 9.100000e-70 274
24 TraesCS4A01G365700 chr2D 100.000 147 0 0 521 667 398728224 398728078 3.270000e-69 272
25 TraesCS4A01G365700 chr1A 100.000 147 0 0 521 667 124785953 124785807 3.270000e-69 272
26 TraesCS4A01G365700 chr3B 98.039 153 1 2 515 667 612035633 612035783 5.470000e-67 265
27 TraesCS4A01G365700 chr5A 98.630 146 2 0 522 667 678573976 678573831 2.550000e-65 259
28 TraesCS4A01G365700 chr5A 98.630 146 2 0 522 667 685875103 685875248 2.550000e-65 259
29 TraesCS4A01G365700 chr7A 93.125 160 10 1 2421 2580 10021230 10021072 1.540000e-57 233
30 TraesCS4A01G365700 chr3A 94.118 153 9 0 2422 2574 658982652 658982804 1.540000e-57 233
31 TraesCS4A01G365700 chr7B 93.082 159 9 2 2421 2577 202508367 202508525 5.550000e-57 231
32 TraesCS4A01G365700 chr6D 92.308 156 11 1 2421 2575 457095974 457095819 1.200000e-53 220
33 TraesCS4A01G365700 chr6B 95.000 140 7 0 522 661 594438525 594438386 1.200000e-53 220
34 TraesCS4A01G365700 chr7D 93.836 146 8 1 2421 2566 161390001 161390145 4.320000e-53 219
35 TraesCS4A01G365700 chr4D 91.358 162 10 3 2420 2580 101440536 101440378 4.320000e-53 219
36 TraesCS4A01G365700 chr3D 91.824 159 10 3 2420 2577 524645321 524645477 4.320000e-53 219
37 TraesCS4A01G365700 chr2B 88.824 170 14 4 2416 2580 732221544 732221375 1.210000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G365700 chr4A 639054486 639057065 2579 False 4765.0 4765 100.00000 1 2580 1 chr4A.!!$F2 2579
1 TraesCS4A01G365700 chr4A 639041215 639043780 2565 False 658.0 658 84.19600 964 1665 2 chr4A.!!$F3 701
2 TraesCS4A01G365700 chr4A 639048281 639048802 521 False 325.0 492 87.76350 936 1578 2 chr4A.!!$F4 642
3 TraesCS4A01G365700 chr5D 533005438 533006133 695 True 726.0 726 85.75400 964 1665 1 chr5D.!!$R2 701
4 TraesCS4A01G365700 chr5D 532819135 532822169 3034 True 535.0 846 90.33050 24 1682 2 chr5D.!!$R4 1658
5 TraesCS4A01G365700 chr5D 532743921 532745985 2064 True 502.5 900 86.95425 138 2420 4 chr5D.!!$R3 2282
6 TraesCS4A01G365700 chr5B 673035754 673036449 695 True 689.0 689 84.87400 964 1662 1 chr5B.!!$R1 698
7 TraesCS4A01G365700 chr5B 672865062 672866753 1691 True 321.6 747 86.57140 18 1651 5 chr5B.!!$R2 1633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 2108 0.03601 CGGCCTCCTCTTTGTGACAT 60.036 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 5626 0.095417 GTTGCGCATTCGTCTTCTCC 59.905 55.0 12.75 0.0 38.14 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.109766 GGCGCAAAAACCATTACTTATCC 58.890 43.478 10.83 0.00 0.00 2.59
46 47 6.201806 CCAGAGAGCTTTTAGATTAATGGTCG 59.798 42.308 0.00 0.00 35.83 4.79
69 70 1.762957 TGATGCTGAGCTAACTACCCC 59.237 52.381 5.83 0.00 0.00 4.95
84 85 5.576447 ACTACCCCGCAAATAAAAGATTG 57.424 39.130 0.00 0.00 0.00 2.67
129 130 5.215903 AGCGAGAACACAATCATATACGAG 58.784 41.667 0.00 0.00 0.00 4.18
170 178 3.120649 CCGTTGATCGAGGAAGAAAACAC 60.121 47.826 4.14 0.00 42.86 3.32
171 179 3.493129 CGTTGATCGAGGAAGAAAACACA 59.507 43.478 0.00 0.00 42.86 3.72
259 926 0.818852 CATGCGACCACCCATGCATA 60.819 55.000 0.00 0.00 45.64 3.14
261 928 1.451207 GCGACCACCCATGCATACA 60.451 57.895 0.00 0.00 0.00 2.29
288 1023 2.482414 ATTACACTCCCGTCCCCATA 57.518 50.000 0.00 0.00 0.00 2.74
291 1026 0.632835 ACACTCCCGTCCCCATAGTA 59.367 55.000 0.00 0.00 0.00 1.82
332 1335 3.637769 TCCTTTGGCAAATATACCACCC 58.362 45.455 13.89 0.00 35.10 4.61
333 1336 2.698274 CCTTTGGCAAATATACCACCCC 59.302 50.000 13.89 0.00 35.10 4.95
334 1337 3.370104 CTTTGGCAAATATACCACCCCA 58.630 45.455 13.89 0.00 35.10 4.96
335 1338 3.697190 TTGGCAAATATACCACCCCAT 57.303 42.857 0.00 0.00 35.10 4.00
336 1339 3.697190 TGGCAAATATACCACCCCATT 57.303 42.857 0.00 0.00 0.00 3.16
348 1844 3.211045 CCACCCCATTCGTATTTGGTAG 58.789 50.000 0.00 0.00 0.00 3.18
350 1846 4.141665 CCACCCCATTCGTATTTGGTAGTA 60.142 45.833 0.00 0.00 0.00 1.82
351 1847 5.430007 CACCCCATTCGTATTTGGTAGTAA 58.570 41.667 0.00 0.00 0.00 2.24
352 1848 6.059484 CACCCCATTCGTATTTGGTAGTAAT 58.941 40.000 0.00 0.00 0.00 1.89
353 1849 6.544564 CACCCCATTCGTATTTGGTAGTAATT 59.455 38.462 0.00 0.00 0.00 1.40
354 1850 7.716123 CACCCCATTCGTATTTGGTAGTAATTA 59.284 37.037 0.00 0.00 0.00 1.40
355 1851 7.716560 ACCCCATTCGTATTTGGTAGTAATTAC 59.283 37.037 7.57 7.57 0.00 1.89
358 1854 9.537192 CCATTCGTATTTGGTAGTAATTACTGA 57.463 33.333 25.27 9.78 37.10 3.41
369 1869 7.546667 TGGTAGTAATTACTGATCGTGTTTTCC 59.453 37.037 25.27 5.81 37.10 3.13
382 1882 5.227908 TCGTGTTTTCCATCTCTAGAACAC 58.772 41.667 9.15 9.15 41.87 3.32
443 1945 0.973632 ACAGGTACGTGCATCCAAGA 59.026 50.000 15.25 0.00 0.00 3.02
452 1954 3.624861 ACGTGCATCCAAGATGAAGAATC 59.375 43.478 8.74 0.00 35.29 2.52
466 1968 8.503458 AGATGAAGAATCGTTCAGATCAAAAT 57.497 30.769 0.00 0.00 39.78 1.82
467 1969 8.396390 AGATGAAGAATCGTTCAGATCAAAATG 58.604 33.333 0.00 0.00 39.78 2.32
478 1984 7.522374 GTTCAGATCAAAATGGTTACTGAGTC 58.478 38.462 0.00 0.00 35.05 3.36
479 1985 5.869344 TCAGATCAAAATGGTTACTGAGTCG 59.131 40.000 0.00 0.00 0.00 4.18
480 1986 5.869344 CAGATCAAAATGGTTACTGAGTCGA 59.131 40.000 0.00 0.00 0.00 4.20
522 2028 2.926200 ACGCAGAAGAATTGATCAGACG 59.074 45.455 0.00 0.00 0.00 4.18
523 2029 2.283617 CGCAGAAGAATTGATCAGACGG 59.716 50.000 0.00 0.00 0.00 4.79
525 2031 3.935203 GCAGAAGAATTGATCAGACGGAA 59.065 43.478 0.00 0.00 0.00 4.30
526 2032 4.201763 GCAGAAGAATTGATCAGACGGAAC 60.202 45.833 0.00 0.00 0.00 3.62
527 2033 5.174395 CAGAAGAATTGATCAGACGGAACT 58.826 41.667 0.00 0.00 0.00 3.01
528 2034 6.333416 CAGAAGAATTGATCAGACGGAACTA 58.667 40.000 0.00 0.00 0.00 2.24
529 2035 6.254589 CAGAAGAATTGATCAGACGGAACTAC 59.745 42.308 0.00 0.00 0.00 2.73
530 2036 5.923733 AGAATTGATCAGACGGAACTACT 57.076 39.130 0.00 0.00 0.00 2.57
531 2037 5.655488 AGAATTGATCAGACGGAACTACTG 58.345 41.667 0.00 0.00 0.00 2.74
532 2038 5.419155 AGAATTGATCAGACGGAACTACTGA 59.581 40.000 0.00 0.00 40.71 3.41
533 2039 4.703645 TTGATCAGACGGAACTACTGAG 57.296 45.455 0.00 0.00 40.10 3.35
534 2040 2.423892 TGATCAGACGGAACTACTGAGC 59.576 50.000 0.00 0.00 41.73 4.26
535 2041 1.905637 TCAGACGGAACTACTGAGCA 58.094 50.000 0.00 0.00 34.56 4.26
536 2042 1.813178 TCAGACGGAACTACTGAGCAG 59.187 52.381 0.00 0.00 34.56 4.24
537 2043 0.528470 AGACGGAACTACTGAGCAGC 59.472 55.000 0.00 0.00 0.00 5.25
538 2044 0.458716 GACGGAACTACTGAGCAGCC 60.459 60.000 0.00 0.00 0.00 4.85
539 2045 1.517257 CGGAACTACTGAGCAGCCG 60.517 63.158 0.00 0.00 0.00 5.52
540 2046 1.890894 GGAACTACTGAGCAGCCGA 59.109 57.895 0.00 0.00 0.00 5.54
541 2047 0.458716 GGAACTACTGAGCAGCCGAC 60.459 60.000 0.00 0.00 0.00 4.79
542 2048 0.243907 GAACTACTGAGCAGCCGACA 59.756 55.000 0.00 0.00 0.00 4.35
543 2049 0.038159 AACTACTGAGCAGCCGACAC 60.038 55.000 0.00 0.00 0.00 3.67
544 2050 1.153745 CTACTGAGCAGCCGACACC 60.154 63.158 0.00 0.00 0.00 4.16
545 2051 2.564553 CTACTGAGCAGCCGACACCC 62.565 65.000 0.00 0.00 0.00 4.61
546 2052 4.007644 CTGAGCAGCCGACACCCA 62.008 66.667 0.00 0.00 0.00 4.51
547 2053 4.314440 TGAGCAGCCGACACCCAC 62.314 66.667 0.00 0.00 0.00 4.61
548 2054 4.008933 GAGCAGCCGACACCCACT 62.009 66.667 0.00 0.00 0.00 4.00
549 2055 4.320456 AGCAGCCGACACCCACTG 62.320 66.667 0.00 0.00 0.00 3.66
555 2061 4.308458 CGACACCCACTGGCCGAA 62.308 66.667 0.00 0.00 33.59 4.30
556 2062 2.668550 GACACCCACTGGCCGAAC 60.669 66.667 0.00 0.00 33.59 3.95
557 2063 3.469863 GACACCCACTGGCCGAACA 62.470 63.158 0.00 0.00 33.59 3.18
558 2064 2.034066 CACCCACTGGCCGAACAT 59.966 61.111 0.00 0.00 33.59 2.71
559 2065 1.603455 CACCCACTGGCCGAACATT 60.603 57.895 0.00 0.00 33.59 2.71
560 2066 1.603455 ACCCACTGGCCGAACATTG 60.603 57.895 0.00 0.00 33.59 2.82
561 2067 2.342650 CCCACTGGCCGAACATTGG 61.343 63.158 0.00 8.17 39.95 3.16
562 2068 1.303236 CCACTGGCCGAACATTGGA 60.303 57.895 9.15 0.00 42.06 3.53
563 2069 1.586154 CCACTGGCCGAACATTGGAC 61.586 60.000 9.15 0.00 42.06 4.02
564 2070 1.671054 ACTGGCCGAACATTGGACG 60.671 57.895 0.00 0.00 37.30 4.79
565 2071 1.375396 CTGGCCGAACATTGGACGA 60.375 57.895 0.00 0.00 37.30 4.20
566 2072 0.744414 CTGGCCGAACATTGGACGAT 60.744 55.000 0.00 0.00 37.30 3.73
567 2073 1.024046 TGGCCGAACATTGGACGATG 61.024 55.000 0.00 0.00 37.30 3.84
568 2074 1.062525 GCCGAACATTGGACGATGC 59.937 57.895 0.00 0.28 0.00 3.91
569 2075 1.369091 GCCGAACATTGGACGATGCT 61.369 55.000 0.00 0.00 0.00 3.79
570 2076 1.086696 CCGAACATTGGACGATGCTT 58.913 50.000 0.00 0.00 0.00 3.91
571 2077 1.468520 CCGAACATTGGACGATGCTTT 59.531 47.619 0.00 0.00 0.00 3.51
572 2078 2.508867 CGAACATTGGACGATGCTTTG 58.491 47.619 0.00 0.00 0.00 2.77
573 2079 2.159430 CGAACATTGGACGATGCTTTGA 59.841 45.455 0.00 0.00 0.00 2.69
574 2080 3.181507 CGAACATTGGACGATGCTTTGAT 60.182 43.478 0.00 0.00 0.00 2.57
575 2081 4.346129 GAACATTGGACGATGCTTTGATC 58.654 43.478 0.00 0.00 0.00 2.92
576 2082 2.684881 ACATTGGACGATGCTTTGATCC 59.315 45.455 0.00 0.00 0.00 3.36
577 2083 2.488204 TTGGACGATGCTTTGATCCA 57.512 45.000 0.00 6.91 37.68 3.41
578 2084 2.028420 TGGACGATGCTTTGATCCAG 57.972 50.000 0.00 0.00 34.50 3.86
579 2085 0.659957 GGACGATGCTTTGATCCAGC 59.340 55.000 6.99 6.99 37.82 4.85
580 2086 0.302890 GACGATGCTTTGATCCAGCG 59.697 55.000 5.92 5.92 45.30 5.18
581 2087 1.091771 ACGATGCTTTGATCCAGCGG 61.092 55.000 11.12 5.52 44.23 5.52
582 2088 1.091771 CGATGCTTTGATCCAGCGGT 61.092 55.000 8.95 1.67 40.45 5.68
583 2089 0.659957 GATGCTTTGATCCAGCGGTC 59.340 55.000 8.95 6.51 40.45 4.79
584 2090 1.091771 ATGCTTTGATCCAGCGGTCG 61.092 55.000 8.95 0.00 40.45 4.79
585 2091 2.464459 GCTTTGATCCAGCGGTCGG 61.464 63.158 0.00 0.00 0.00 4.79
586 2092 2.435938 TTTGATCCAGCGGTCGGC 60.436 61.111 0.00 0.00 44.05 5.54
587 2093 3.969250 TTTGATCCAGCGGTCGGCC 62.969 63.158 0.00 0.00 45.17 6.13
589 2095 4.593864 GATCCAGCGGTCGGCCTC 62.594 72.222 3.66 0.00 45.17 4.70
595 2101 4.083862 GCGGTCGGCCTCCTCTTT 62.084 66.667 3.66 0.00 34.80 2.52
596 2102 2.125512 CGGTCGGCCTCCTCTTTG 60.126 66.667 3.66 0.00 0.00 2.77
597 2103 2.943978 CGGTCGGCCTCCTCTTTGT 61.944 63.158 3.66 0.00 0.00 2.83
598 2104 1.376037 GGTCGGCCTCCTCTTTGTG 60.376 63.158 0.00 0.00 0.00 3.33
599 2105 1.671742 GTCGGCCTCCTCTTTGTGA 59.328 57.895 0.00 0.00 0.00 3.58
600 2106 0.670854 GTCGGCCTCCTCTTTGTGAC 60.671 60.000 0.00 0.00 0.00 3.67
601 2107 1.118965 TCGGCCTCCTCTTTGTGACA 61.119 55.000 0.00 0.00 0.00 3.58
602 2108 0.036010 CGGCCTCCTCTTTGTGACAT 60.036 55.000 0.00 0.00 0.00 3.06
603 2109 1.457346 GGCCTCCTCTTTGTGACATG 58.543 55.000 0.00 0.00 0.00 3.21
604 2110 0.807496 GCCTCCTCTTTGTGACATGC 59.193 55.000 0.00 0.00 0.00 4.06
605 2111 1.883638 GCCTCCTCTTTGTGACATGCA 60.884 52.381 0.00 0.00 0.00 3.96
606 2112 2.719739 CCTCCTCTTTGTGACATGCAT 58.280 47.619 0.00 0.00 0.00 3.96
607 2113 2.422479 CCTCCTCTTTGTGACATGCATG 59.578 50.000 25.09 25.09 0.00 4.06
608 2114 3.079578 CTCCTCTTTGTGACATGCATGT 58.920 45.455 31.82 31.82 45.16 3.21
609 2115 4.256110 CTCCTCTTTGTGACATGCATGTA 58.744 43.478 31.45 14.49 41.95 2.29
610 2116 4.002982 TCCTCTTTGTGACATGCATGTAC 58.997 43.478 31.45 25.74 41.95 2.90
611 2117 3.181517 CCTCTTTGTGACATGCATGTACG 60.182 47.826 31.45 14.10 41.95 3.67
612 2118 2.741517 TCTTTGTGACATGCATGTACGG 59.258 45.455 31.45 19.70 41.95 4.02
613 2119 2.177394 TTGTGACATGCATGTACGGT 57.823 45.000 31.45 9.56 41.95 4.83
614 2120 1.720805 TGTGACATGCATGTACGGTC 58.279 50.000 31.45 18.92 41.95 4.79
615 2121 1.001406 TGTGACATGCATGTACGGTCA 59.999 47.619 31.45 21.25 41.95 4.02
616 2122 1.660607 GTGACATGCATGTACGGTCAG 59.339 52.381 31.45 2.62 41.95 3.51
617 2123 1.548269 TGACATGCATGTACGGTCAGA 59.452 47.619 31.45 6.29 41.95 3.27
618 2124 2.168313 TGACATGCATGTACGGTCAGAT 59.832 45.455 31.45 5.52 41.95 2.90
619 2125 2.797156 GACATGCATGTACGGTCAGATC 59.203 50.000 31.45 11.80 41.95 2.75
620 2126 2.168313 ACATGCATGTACGGTCAGATCA 59.832 45.455 30.50 0.00 39.68 2.92
621 2127 2.584492 TGCATGTACGGTCAGATCAG 57.416 50.000 0.00 0.00 0.00 2.90
622 2128 1.824852 TGCATGTACGGTCAGATCAGT 59.175 47.619 0.00 0.00 0.00 3.41
623 2129 3.020984 TGCATGTACGGTCAGATCAGTA 58.979 45.455 0.00 0.00 0.00 2.74
624 2130 3.066760 TGCATGTACGGTCAGATCAGTAG 59.933 47.826 0.00 0.00 0.00 2.57
625 2131 3.633235 CATGTACGGTCAGATCAGTAGC 58.367 50.000 0.00 0.00 0.00 3.58
626 2132 2.718563 TGTACGGTCAGATCAGTAGCA 58.281 47.619 0.00 0.00 0.00 3.49
627 2133 3.288092 TGTACGGTCAGATCAGTAGCAT 58.712 45.455 0.00 0.00 0.00 3.79
628 2134 3.315470 TGTACGGTCAGATCAGTAGCATC 59.685 47.826 0.00 0.00 0.00 3.91
629 2135 1.335182 ACGGTCAGATCAGTAGCATCG 59.665 52.381 0.00 0.00 0.00 3.84
630 2136 1.335182 CGGTCAGATCAGTAGCATCGT 59.665 52.381 0.00 0.00 0.00 3.73
631 2137 2.603412 CGGTCAGATCAGTAGCATCGTC 60.603 54.545 0.00 0.00 0.00 4.20
632 2138 2.287909 GGTCAGATCAGTAGCATCGTCC 60.288 54.545 0.00 0.00 0.00 4.79
633 2139 2.359214 GTCAGATCAGTAGCATCGTCCA 59.641 50.000 0.00 0.00 0.00 4.02
634 2140 2.620585 TCAGATCAGTAGCATCGTCCAG 59.379 50.000 0.00 0.00 0.00 3.86
635 2141 2.620585 CAGATCAGTAGCATCGTCCAGA 59.379 50.000 0.00 0.00 0.00 3.86
636 2142 2.621055 AGATCAGTAGCATCGTCCAGAC 59.379 50.000 0.00 0.00 0.00 3.51
637 2143 1.834188 TCAGTAGCATCGTCCAGACA 58.166 50.000 0.00 0.00 0.00 3.41
638 2144 2.379005 TCAGTAGCATCGTCCAGACAT 58.621 47.619 0.00 0.00 0.00 3.06
639 2145 2.359214 TCAGTAGCATCGTCCAGACATC 59.641 50.000 0.00 0.00 0.00 3.06
640 2146 1.335182 AGTAGCATCGTCCAGACATCG 59.665 52.381 0.00 0.00 0.00 3.84
641 2147 0.668535 TAGCATCGTCCAGACATCGG 59.331 55.000 0.00 0.00 0.00 4.18
642 2148 2.240500 GCATCGTCCAGACATCGGC 61.241 63.158 0.00 0.00 0.00 5.54
643 2149 1.439228 CATCGTCCAGACATCGGCT 59.561 57.895 0.00 0.00 0.00 5.52
644 2150 0.873312 CATCGTCCAGACATCGGCTG 60.873 60.000 0.00 0.00 0.00 4.85
645 2151 2.635229 ATCGTCCAGACATCGGCTGC 62.635 60.000 0.00 0.00 32.06 5.25
646 2152 2.265739 GTCCAGACATCGGCTGCA 59.734 61.111 0.50 0.00 32.06 4.41
647 2153 2.103042 GTCCAGACATCGGCTGCAC 61.103 63.158 0.50 0.00 32.06 4.57
648 2154 2.046988 CCAGACATCGGCTGCACA 60.047 61.111 0.50 0.00 32.06 4.57
649 2155 2.393768 CCAGACATCGGCTGCACAC 61.394 63.158 0.50 0.00 32.06 3.82
650 2156 2.046892 AGACATCGGCTGCACACC 60.047 61.111 0.50 0.00 0.00 4.16
665 2171 3.706287 CACCGTCGTGTGTATAGCA 57.294 52.632 5.89 0.00 35.10 3.49
666 2172 1.545759 CACCGTCGTGTGTATAGCAG 58.454 55.000 5.89 0.00 35.10 4.24
667 2173 1.131693 CACCGTCGTGTGTATAGCAGA 59.868 52.381 5.89 0.00 35.10 4.26
668 2174 2.022195 ACCGTCGTGTGTATAGCAGAT 58.978 47.619 0.00 0.00 0.00 2.90
669 2175 2.033049 ACCGTCGTGTGTATAGCAGATC 59.967 50.000 0.00 0.00 0.00 2.75
670 2176 2.032924 CCGTCGTGTGTATAGCAGATCA 59.967 50.000 0.00 0.00 0.00 2.92
671 2177 3.488553 CCGTCGTGTGTATAGCAGATCAA 60.489 47.826 0.00 0.00 0.00 2.57
686 2192 4.795635 GCAGATCAATCATGAGTCTACGCT 60.796 45.833 0.09 0.00 39.39 5.07
687 2193 5.563671 GCAGATCAATCATGAGTCTACGCTA 60.564 44.000 0.09 0.00 39.39 4.26
704 2212 3.973657 CGCTATACGGTATGTGAGGTTT 58.026 45.455 10.86 0.00 38.44 3.27
738 2247 0.661187 TCACCTTCAACGACGCGTAC 60.661 55.000 13.97 5.03 39.99 3.67
741 2250 0.662374 CCTTCAACGACGCGTACACT 60.662 55.000 13.97 0.00 39.99 3.55
742 2251 0.429736 CTTCAACGACGCGTACACTG 59.570 55.000 13.97 7.80 39.99 3.66
743 2252 1.542272 TTCAACGACGCGTACACTGC 61.542 55.000 13.97 0.00 39.99 4.40
788 2299 0.812014 TGAACGCCGCTTTGACTTGA 60.812 50.000 0.00 0.00 0.00 3.02
820 2367 3.502979 TGGGTTATTTTACACGCTGAACC 59.497 43.478 0.00 0.00 35.23 3.62
885 2454 4.710375 CACGACCTATATATAAGCACCCCT 59.290 45.833 0.00 0.00 0.00 4.79
886 2455 4.954826 ACGACCTATATATAAGCACCCCTC 59.045 45.833 0.00 0.00 0.00 4.30
891 2521 1.827399 ATATAAGCACCCCTCCGGCG 61.827 60.000 0.00 0.00 33.26 6.46
919 2549 2.026014 CGGCACACAACAACAGCC 59.974 61.111 0.00 0.00 41.86 4.85
921 2551 1.515020 GGCACACAACAACAGCCAA 59.485 52.632 0.00 0.00 44.59 4.52
941 2571 2.050077 GGCAACAGCAAAGCGACC 60.050 61.111 0.00 0.00 0.00 4.79
948 2578 1.302033 AGCAAAGCGACCTCACCAG 60.302 57.895 0.00 0.00 0.00 4.00
991 2625 1.228124 CTTTCCAGTTCACCGGCCA 60.228 57.895 0.00 0.00 0.00 5.36
1114 4683 2.989824 ACTGCGGCCTCTGTACGT 60.990 61.111 3.07 0.00 0.00 3.57
1116 4685 1.064296 CTGCGGCCTCTGTACGTAG 59.936 63.158 0.00 0.00 34.35 3.51
1117 4686 2.278661 GCGGCCTCTGTACGTAGC 60.279 66.667 0.00 0.00 0.00 3.58
1119 4688 2.119655 CGGCCTCTGTACGTAGCCT 61.120 63.158 17.61 0.00 41.60 4.58
1120 4689 1.664321 CGGCCTCTGTACGTAGCCTT 61.664 60.000 17.61 0.00 41.60 4.35
1121 4690 0.179108 GGCCTCTGTACGTAGCCTTG 60.179 60.000 13.88 0.00 40.57 3.61
1123 4692 0.818296 CCTCTGTACGTAGCCTTGCT 59.182 55.000 0.00 0.00 43.41 3.91
1124 4693 1.202313 CCTCTGTACGTAGCCTTGCTC 60.202 57.143 0.00 0.00 40.44 4.26
1125 4694 1.746220 CTCTGTACGTAGCCTTGCTCT 59.254 52.381 0.00 0.00 40.44 4.09
1126 4695 1.743958 TCTGTACGTAGCCTTGCTCTC 59.256 52.381 0.00 0.00 40.44 3.20
1127 4696 1.472878 CTGTACGTAGCCTTGCTCTCA 59.527 52.381 0.00 0.00 40.44 3.27
1128 4697 1.472878 TGTACGTAGCCTTGCTCTCAG 59.527 52.381 0.00 0.00 40.44 3.35
1129 4698 1.103803 TACGTAGCCTTGCTCTCAGG 58.896 55.000 0.00 0.00 40.44 3.86
1161 4741 4.478203 CCATCTTCCTCCTACTCATCTCA 58.522 47.826 0.00 0.00 0.00 3.27
1163 4745 5.221422 CCATCTTCCTCCTACTCATCTCAAC 60.221 48.000 0.00 0.00 0.00 3.18
1515 5130 4.641645 CGGCTGGCACCTCAACCA 62.642 66.667 1.08 0.00 0.00 3.67
1516 5131 2.203480 GGCTGGCACCTCAACCAA 60.203 61.111 0.00 0.00 34.96 3.67
1597 5227 2.650813 GATCGAACCCGGCTGCTCAT 62.651 60.000 0.00 0.00 36.24 2.90
1679 5326 5.178623 TGTTGCATAGACTTGGTTAAGTTCG 59.821 40.000 0.00 0.00 46.79 3.95
1682 5329 5.865552 TGCATAGACTTGGTTAAGTTCGTAC 59.134 40.000 0.00 0.00 46.79 3.67
1683 5330 6.098017 GCATAGACTTGGTTAAGTTCGTACT 58.902 40.000 0.00 0.00 46.79 2.73
1684 5331 6.253083 GCATAGACTTGGTTAAGTTCGTACTC 59.747 42.308 0.00 0.00 46.79 2.59
1685 5332 7.536855 CATAGACTTGGTTAAGTTCGTACTCT 58.463 38.462 0.00 0.00 46.79 3.24
1686 5333 6.402456 AGACTTGGTTAAGTTCGTACTCTT 57.598 37.500 0.00 0.00 46.79 2.85
1687 5334 6.814043 AGACTTGGTTAAGTTCGTACTCTTT 58.186 36.000 0.00 0.00 46.79 2.52
1688 5335 6.700520 AGACTTGGTTAAGTTCGTACTCTTTG 59.299 38.462 0.00 0.00 46.79 2.77
1689 5336 6.343703 ACTTGGTTAAGTTCGTACTCTTTGT 58.656 36.000 0.00 0.00 44.57 2.83
1690 5337 6.478016 ACTTGGTTAAGTTCGTACTCTTTGTC 59.522 38.462 0.00 0.00 44.57 3.18
1691 5338 5.904941 TGGTTAAGTTCGTACTCTTTGTCA 58.095 37.500 0.00 0.00 31.99 3.58
1692 5339 6.339730 TGGTTAAGTTCGTACTCTTTGTCAA 58.660 36.000 0.00 0.00 31.99 3.18
1693 5340 6.987992 TGGTTAAGTTCGTACTCTTTGTCAAT 59.012 34.615 0.00 0.00 31.99 2.57
1694 5341 8.143193 TGGTTAAGTTCGTACTCTTTGTCAATA 58.857 33.333 0.00 0.00 31.99 1.90
1695 5342 8.981647 GGTTAAGTTCGTACTCTTTGTCAATAA 58.018 33.333 0.00 0.00 31.99 1.40
1700 5347 9.268268 AGTTCGTACTCTTTGTCAATAAAATCA 57.732 29.630 0.00 0.00 0.00 2.57
1701 5348 9.314501 GTTCGTACTCTTTGTCAATAAAATCAC 57.685 33.333 0.00 0.00 0.00 3.06
1702 5349 8.025243 TCGTACTCTTTGTCAATAAAATCACC 57.975 34.615 0.00 0.00 0.00 4.02
1703 5350 7.118680 TCGTACTCTTTGTCAATAAAATCACCC 59.881 37.037 0.00 0.00 0.00 4.61
1704 5351 7.119262 CGTACTCTTTGTCAATAAAATCACCCT 59.881 37.037 0.00 0.00 0.00 4.34
1705 5352 7.839680 ACTCTTTGTCAATAAAATCACCCTT 57.160 32.000 0.00 0.00 0.00 3.95
1706 5353 8.250143 ACTCTTTGTCAATAAAATCACCCTTT 57.750 30.769 0.00 0.00 0.00 3.11
1707 5354 8.143835 ACTCTTTGTCAATAAAATCACCCTTTG 58.856 33.333 0.00 0.00 0.00 2.77
1708 5355 8.017418 TCTTTGTCAATAAAATCACCCTTTGT 57.983 30.769 0.00 0.00 0.00 2.83
1709 5356 8.141268 TCTTTGTCAATAAAATCACCCTTTGTC 58.859 33.333 0.00 0.00 0.00 3.18
1710 5357 6.007936 TGTCAATAAAATCACCCTTTGTCG 57.992 37.500 0.00 0.00 0.00 4.35
1711 5358 5.765677 TGTCAATAAAATCACCCTTTGTCGA 59.234 36.000 0.00 0.00 0.00 4.20
1712 5359 6.263392 TGTCAATAAAATCACCCTTTGTCGAA 59.737 34.615 0.00 0.00 0.00 3.71
1713 5360 7.142680 GTCAATAAAATCACCCTTTGTCGAAA 58.857 34.615 0.00 0.00 0.00 3.46
1714 5361 7.650104 GTCAATAAAATCACCCTTTGTCGAAAA 59.350 33.333 0.00 0.00 0.00 2.29
1715 5362 8.198109 TCAATAAAATCACCCTTTGTCGAAAAA 58.802 29.630 0.00 0.00 0.00 1.94
1744 5391 7.432148 TCATACTGTGAATGGGTTATGTACT 57.568 36.000 0.00 0.00 32.78 2.73
1745 5392 7.857456 TCATACTGTGAATGGGTTATGTACTT 58.143 34.615 0.00 0.00 32.78 2.24
1746 5393 8.983789 TCATACTGTGAATGGGTTATGTACTTA 58.016 33.333 0.00 0.00 32.78 2.24
1747 5394 9.778741 CATACTGTGAATGGGTTATGTACTTAT 57.221 33.333 0.00 0.00 0.00 1.73
1748 5395 9.778741 ATACTGTGAATGGGTTATGTACTTATG 57.221 33.333 0.00 0.00 0.00 1.90
1749 5396 7.630082 ACTGTGAATGGGTTATGTACTTATGT 58.370 34.615 0.00 0.00 0.00 2.29
1750 5397 8.107095 ACTGTGAATGGGTTATGTACTTATGTT 58.893 33.333 0.00 0.00 0.00 2.71
1751 5398 8.275015 TGTGAATGGGTTATGTACTTATGTTG 57.725 34.615 0.00 0.00 0.00 3.33
1752 5399 7.885922 TGTGAATGGGTTATGTACTTATGTTGT 59.114 33.333 0.00 0.00 0.00 3.32
1753 5400 9.386010 GTGAATGGGTTATGTACTTATGTTGTA 57.614 33.333 0.00 0.00 0.00 2.41
1756 5403 8.918202 ATGGGTTATGTACTTATGTTGTATGG 57.082 34.615 0.00 0.00 0.00 2.74
1757 5404 7.863722 TGGGTTATGTACTTATGTTGTATGGT 58.136 34.615 0.00 0.00 0.00 3.55
1758 5405 7.771361 TGGGTTATGTACTTATGTTGTATGGTG 59.229 37.037 0.00 0.00 0.00 4.17
1763 5410 7.899178 TGTACTTATGTTGTATGGTGAGTTG 57.101 36.000 0.00 0.00 0.00 3.16
1766 5413 7.615582 ACTTATGTTGTATGGTGAGTTGATG 57.384 36.000 0.00 0.00 0.00 3.07
1780 5427 3.875727 GAGTTGATGATGTGATGTCAGGG 59.124 47.826 0.00 0.00 0.00 4.45
1782 5429 1.560611 TGATGATGTGATGTCAGGGCA 59.439 47.619 0.00 0.00 0.00 5.36
1787 5434 1.896220 TGTGATGTCAGGGCAAGAAC 58.104 50.000 0.00 0.00 0.00 3.01
1788 5435 0.798776 GTGATGTCAGGGCAAGAACG 59.201 55.000 0.00 0.00 0.00 3.95
1789 5436 0.396435 TGATGTCAGGGCAAGAACGT 59.604 50.000 0.00 0.00 0.00 3.99
1790 5437 0.798776 GATGTCAGGGCAAGAACGTG 59.201 55.000 0.00 0.00 0.00 4.49
1791 5438 0.108585 ATGTCAGGGCAAGAACGTGT 59.891 50.000 0.00 0.00 0.00 4.49
1792 5439 0.813610 TGTCAGGGCAAGAACGTGTG 60.814 55.000 0.00 0.00 0.00 3.82
1793 5440 0.814010 GTCAGGGCAAGAACGTGTGT 60.814 55.000 0.00 0.00 0.00 3.72
1794 5441 0.753867 TCAGGGCAAGAACGTGTGTA 59.246 50.000 0.00 0.00 0.00 2.90
1795 5442 0.865769 CAGGGCAAGAACGTGTGTAC 59.134 55.000 0.00 0.00 0.00 2.90
1808 5455 4.111489 CGTGTGTACGTTTTTCTCCTTC 57.889 45.455 0.00 0.00 44.99 3.46
1809 5456 3.800506 CGTGTGTACGTTTTTCTCCTTCT 59.199 43.478 0.00 0.00 44.99 2.85
1857 5513 1.372582 TGTCGCTCTGCATTTCATCC 58.627 50.000 0.00 0.00 0.00 3.51
1861 5517 1.741706 CGCTCTGCATTTCATCCTTGT 59.258 47.619 0.00 0.00 0.00 3.16
1908 5564 5.245075 TCGGCCTCTGGTTTTGAATAAAAAT 59.755 36.000 0.00 0.00 39.86 1.82
1911 5567 6.934083 GGCCTCTGGTTTTGAATAAAAATTCA 59.066 34.615 0.00 0.00 39.86 2.57
1913 5569 8.445493 GCCTCTGGTTTTGAATAAAAATTCATG 58.555 33.333 1.91 0.00 39.86 3.07
1937 5593 9.899661 ATGTTTGCTATTCCTTATACTACAACA 57.100 29.630 0.00 0.00 0.00 3.33
1970 5626 2.489329 ACAATTTCAGCCGATTCCTGTG 59.511 45.455 0.00 0.00 0.00 3.66
1990 5646 1.071605 GAGAAGACGAATGCGCAACT 58.928 50.000 17.11 4.10 42.48 3.16
1993 5649 0.602638 AAGACGAATGCGCAACTCCA 60.603 50.000 17.11 0.00 42.48 3.86
1995 5651 1.134818 AGACGAATGCGCAACTCCATA 60.135 47.619 17.11 0.00 42.48 2.74
2018 5674 3.041940 GGGAACCGCAGTGTGTCG 61.042 66.667 2.46 0.00 40.86 4.35
2020 5676 3.712881 GAACCGCAGTGTGTCGCC 61.713 66.667 2.46 0.00 0.00 5.54
2027 5683 1.139734 CAGTGTGTCGCCGCTAGAT 59.860 57.895 0.00 0.00 0.00 1.98
2044 5700 3.935818 AGATGGGAGTAAGAGAGTCGA 57.064 47.619 0.00 0.00 0.00 4.20
2056 5712 3.392595 GAGTCGACGGTGCGGGTAG 62.393 68.421 10.46 0.00 0.00 3.18
2062 5718 3.379445 CGGTGCGGGTAGAGGTGT 61.379 66.667 0.00 0.00 0.00 4.16
2066 5722 1.982395 TGCGGGTAGAGGTGTGAGG 60.982 63.158 0.00 0.00 0.00 3.86
2078 5734 1.450134 TGTGAGGCATGATCACCGC 60.450 57.895 21.80 9.92 45.24 5.68
2081 5737 1.153289 GAGGCATGATCACCGCTGT 60.153 57.895 16.26 6.51 0.00 4.40
2099 5755 1.937528 TCGGAGAAGGGGAGGGGTA 60.938 63.158 0.00 0.00 0.00 3.69
2109 5765 0.865362 GGGAGGGGTATAGAGGGACA 59.135 60.000 0.00 0.00 0.00 4.02
2125 5781 1.336517 GGACATCCGAGACGACAACAA 60.337 52.381 0.00 0.00 0.00 2.83
2133 5789 2.456989 GAGACGACAACAACTCGACAA 58.543 47.619 0.00 0.00 35.08 3.18
2138 5794 2.800544 CGACAACAACTCGACAAAGGAT 59.199 45.455 0.00 0.00 32.65 3.24
2185 5841 1.556591 GCGACGCGATAATGGCATCA 61.557 55.000 15.93 0.00 0.00 3.07
2219 5875 2.494530 GGCAACCGGTTCAGCCAAA 61.495 57.895 32.96 0.00 46.26 3.28
2244 5901 2.210711 GGAGGGTAGCCGAGATGGG 61.211 68.421 5.06 0.00 38.63 4.00
2245 5902 1.152525 GAGGGTAGCCGAGATGGGA 60.153 63.158 5.06 0.00 38.63 4.37
2256 5913 2.660572 CGAGATGGGAGAAGAGGAAGA 58.339 52.381 0.00 0.00 0.00 2.87
2261 5918 2.724454 TGGGAGAAGAGGAAGACGTAG 58.276 52.381 0.00 0.00 0.00 3.51
2268 5925 3.436577 AGAGGAAGACGTAGGAGTGAA 57.563 47.619 0.00 0.00 0.00 3.18
2290 5947 1.457346 AAGGCTGATGCGAGGAAAAG 58.543 50.000 0.00 0.00 40.82 2.27
2293 5950 1.812571 GGCTGATGCGAGGAAAAGAAA 59.187 47.619 0.00 0.00 40.82 2.52
2294 5951 2.414691 GGCTGATGCGAGGAAAAGAAAC 60.415 50.000 0.00 0.00 40.82 2.78
2295 5952 2.226437 GCTGATGCGAGGAAAAGAAACA 59.774 45.455 0.00 0.00 0.00 2.83
2296 5953 3.669023 GCTGATGCGAGGAAAAGAAACAG 60.669 47.826 0.00 0.00 0.00 3.16
2297 5954 3.476552 TGATGCGAGGAAAAGAAACAGT 58.523 40.909 0.00 0.00 0.00 3.55
2298 5955 3.882888 TGATGCGAGGAAAAGAAACAGTT 59.117 39.130 0.00 0.00 0.00 3.16
2299 5956 3.691049 TGCGAGGAAAAGAAACAGTTG 57.309 42.857 0.00 0.00 0.00 3.16
2300 5957 3.275143 TGCGAGGAAAAGAAACAGTTGA 58.725 40.909 0.00 0.00 0.00 3.18
2301 5958 3.064820 TGCGAGGAAAAGAAACAGTTGAC 59.935 43.478 0.00 0.00 0.00 3.18
2302 5959 3.312697 GCGAGGAAAAGAAACAGTTGACT 59.687 43.478 0.00 0.00 0.00 3.41
2303 5960 4.552961 GCGAGGAAAAGAAACAGTTGACTC 60.553 45.833 0.00 0.00 0.00 3.36
2304 5961 4.570772 CGAGGAAAAGAAACAGTTGACTCA 59.429 41.667 0.00 0.00 0.00 3.41
2305 5962 5.237344 CGAGGAAAAGAAACAGTTGACTCAT 59.763 40.000 0.00 0.00 0.00 2.90
2306 5963 6.238484 CGAGGAAAAGAAACAGTTGACTCATT 60.238 38.462 0.00 0.00 0.00 2.57
2307 5964 7.032377 AGGAAAAGAAACAGTTGACTCATTC 57.968 36.000 0.00 0.05 0.00 2.67
2308 5965 6.603201 AGGAAAAGAAACAGTTGACTCATTCA 59.397 34.615 14.18 0.00 0.00 2.57
2309 5966 7.122650 AGGAAAAGAAACAGTTGACTCATTCAA 59.877 33.333 14.18 0.00 42.26 2.69
2310 5967 7.433425 GGAAAAGAAACAGTTGACTCATTCAAG 59.567 37.037 14.18 0.00 45.23 3.02
2323 5980 6.014242 TGACTCATTCAAGTGACTCATAGGTT 60.014 38.462 0.00 0.00 0.00 3.50
2379 6036 7.516198 TTATTCTTCAAGAAAAAGCAGAGCT 57.484 32.000 3.35 0.00 37.99 4.09
2381 6038 6.445475 ATTCTTCAAGAAAAAGCAGAGCTTC 58.555 36.000 3.35 0.00 40.25 3.86
2401 6058 1.750780 GCCCAAGCTACTGCCTTCC 60.751 63.158 0.00 0.00 40.80 3.46
2420 6077 5.527582 CCTTCCAATACGGTATTTCTTCCAG 59.472 44.000 10.59 0.00 35.57 3.86
2421 6078 5.031066 TCCAATACGGTATTTCTTCCAGG 57.969 43.478 10.59 7.55 35.57 4.45
2422 6079 4.134563 CCAATACGGTATTTCTTCCAGGG 58.865 47.826 10.59 3.43 0.00 4.45
2423 6080 4.141574 CCAATACGGTATTTCTTCCAGGGA 60.142 45.833 10.59 0.00 0.00 4.20
2424 6081 5.433526 CAATACGGTATTTCTTCCAGGGAA 58.566 41.667 10.59 0.09 0.00 3.97
2425 6082 5.703730 ATACGGTATTTCTTCCAGGGAAA 57.296 39.130 1.90 0.00 37.15 3.13
2426 6083 4.586306 ACGGTATTTCTTCCAGGGAAAT 57.414 40.909 1.90 8.32 43.22 2.17
2427 6084 5.703730 ACGGTATTTCTTCCAGGGAAATA 57.296 39.130 1.90 6.75 41.66 1.40
2435 6092 7.996098 TTTCTTCCAGGGAAATACACTTTAG 57.004 36.000 1.90 0.00 33.34 1.85
2436 6093 6.697641 TCTTCCAGGGAAATACACTTTAGT 57.302 37.500 1.90 0.00 33.34 2.24
2437 6094 7.086685 TCTTCCAGGGAAATACACTTTAGTT 57.913 36.000 1.90 0.00 33.34 2.24
2438 6095 7.523415 TCTTCCAGGGAAATACACTTTAGTTT 58.477 34.615 1.90 0.00 33.34 2.66
2439 6096 7.664318 TCTTCCAGGGAAATACACTTTAGTTTC 59.336 37.037 1.90 0.00 33.34 2.78
2440 6097 7.086685 TCCAGGGAAATACACTTTAGTTTCT 57.913 36.000 0.00 0.00 32.61 2.52
2441 6098 6.940298 TCCAGGGAAATACACTTTAGTTTCTG 59.060 38.462 0.00 0.00 32.61 3.02
2442 6099 6.151144 CCAGGGAAATACACTTTAGTTTCTGG 59.849 42.308 0.00 0.00 32.61 3.86
2443 6100 6.715264 CAGGGAAATACACTTTAGTTTCTGGT 59.285 38.462 0.00 0.00 32.61 4.00
2444 6101 7.230712 CAGGGAAATACACTTTAGTTTCTGGTT 59.769 37.037 0.00 0.00 32.61 3.67
2445 6102 7.230712 AGGGAAATACACTTTAGTTTCTGGTTG 59.769 37.037 0.00 0.00 32.61 3.77
2446 6103 7.013942 GGGAAATACACTTTAGTTTCTGGTTGT 59.986 37.037 0.00 0.00 32.61 3.32
2447 6104 9.059260 GGAAATACACTTTAGTTTCTGGTTGTA 57.941 33.333 0.00 0.00 32.61 2.41
2464 6121 9.434275 TCTGGTTGTATATACATCCTATATGGG 57.566 37.037 30.09 17.21 43.31 4.00
2465 6122 9.213777 CTGGTTGTATATACATCCTATATGGGT 57.786 37.037 30.09 0.00 43.31 4.51
2539 6196 9.737427 TTAGATTAAACTCGATTTTGTTTTGCA 57.263 25.926 10.70 0.00 37.53 4.08
2540 6197 8.061125 AGATTAAACTCGATTTTGTTTTGCAC 57.939 30.769 10.70 0.56 37.53 4.57
2541 6198 7.920682 AGATTAAACTCGATTTTGTTTTGCACT 59.079 29.630 10.70 2.43 37.53 4.40
2542 6199 9.176181 GATTAAACTCGATTTTGTTTTGCACTA 57.824 29.630 10.70 0.00 37.53 2.74
2543 6200 8.555166 TTAAACTCGATTTTGTTTTGCACTAG 57.445 30.769 10.70 0.00 37.53 2.57
2544 6201 5.751243 ACTCGATTTTGTTTTGCACTAGT 57.249 34.783 0.00 0.00 0.00 2.57
2545 6202 6.854496 ACTCGATTTTGTTTTGCACTAGTA 57.146 33.333 0.00 0.00 0.00 1.82
2546 6203 7.435068 ACTCGATTTTGTTTTGCACTAGTAT 57.565 32.000 0.00 0.00 0.00 2.12
2547 6204 8.542497 ACTCGATTTTGTTTTGCACTAGTATA 57.458 30.769 0.00 0.00 0.00 1.47
2548 6205 9.162764 ACTCGATTTTGTTTTGCACTAGTATAT 57.837 29.630 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.109766 GGATAAGTAATGGTTTTTGCGCC 58.890 43.478 4.18 0.00 0.00 6.53
1 2 4.739195 TGGATAAGTAATGGTTTTTGCGC 58.261 39.130 0.00 0.00 0.00 6.09
2 3 6.093495 TCTCTGGATAAGTAATGGTTTTTGCG 59.907 38.462 0.00 0.00 0.00 4.85
3 4 7.391148 TCTCTGGATAAGTAATGGTTTTTGC 57.609 36.000 0.00 0.00 0.00 3.68
4 5 7.337942 AGCTCTCTGGATAAGTAATGGTTTTTG 59.662 37.037 0.00 0.00 0.00 2.44
5 6 7.406104 AGCTCTCTGGATAAGTAATGGTTTTT 58.594 34.615 0.00 0.00 0.00 1.94
6 7 6.963322 AGCTCTCTGGATAAGTAATGGTTTT 58.037 36.000 0.00 0.00 0.00 2.43
7 8 6.567602 AGCTCTCTGGATAAGTAATGGTTT 57.432 37.500 0.00 0.00 0.00 3.27
8 9 6.567602 AAGCTCTCTGGATAAGTAATGGTT 57.432 37.500 0.00 0.00 0.00 3.67
9 10 6.567602 AAAGCTCTCTGGATAAGTAATGGT 57.432 37.500 0.00 0.00 0.00 3.55
10 11 8.424918 TCTAAAAGCTCTCTGGATAAGTAATGG 58.575 37.037 0.00 0.00 0.00 3.16
11 12 9.995003 ATCTAAAAGCTCTCTGGATAAGTAATG 57.005 33.333 0.00 0.00 0.00 1.90
22 23 6.201806 CCGACCATTAATCTAAAAGCTCTCTG 59.798 42.308 0.00 0.00 0.00 3.35
46 47 2.478831 GTAGTTAGCTCAGCATCAGCC 58.521 52.381 0.00 0.00 43.56 4.85
69 70 7.041098 AGCTATACTCCCAATCTTTTATTTGCG 60.041 37.037 0.00 0.00 0.00 4.85
84 85 2.550606 CTCACGTCTCAGCTATACTCCC 59.449 54.545 0.00 0.00 0.00 4.30
129 130 3.115554 CGGCTTGGCTTGTTAATAATGC 58.884 45.455 0.00 0.00 0.00 3.56
259 926 1.408266 GGGAGTGTAATTCGGGCATGT 60.408 52.381 0.00 0.00 0.00 3.21
261 928 0.179056 CGGGAGTGTAATTCGGGCAT 60.179 55.000 0.00 0.00 0.00 4.40
288 1023 6.463472 GGAAAATGTAGGGCGGTATTACTACT 60.463 42.308 0.00 0.00 37.34 2.57
291 1026 4.411212 AGGAAAATGTAGGGCGGTATTACT 59.589 41.667 0.00 0.00 0.00 2.24
332 1335 9.537192 TCAGTAATTACTACCAAATACGAATGG 57.463 33.333 17.62 0.60 37.29 3.16
335 1338 9.454585 CGATCAGTAATTACTACCAAATACGAA 57.545 33.333 17.62 0.00 34.13 3.85
336 1339 8.623903 ACGATCAGTAATTACTACCAAATACGA 58.376 33.333 17.62 8.15 34.13 3.43
348 1844 8.197988 AGATGGAAAACACGATCAGTAATTAC 57.802 34.615 7.57 7.57 0.00 1.89
350 1846 7.106239 AGAGATGGAAAACACGATCAGTAATT 58.894 34.615 0.00 0.00 0.00 1.40
351 1847 6.644347 AGAGATGGAAAACACGATCAGTAAT 58.356 36.000 0.00 0.00 0.00 1.89
352 1848 6.037786 AGAGATGGAAAACACGATCAGTAA 57.962 37.500 0.00 0.00 0.00 2.24
353 1849 5.661056 AGAGATGGAAAACACGATCAGTA 57.339 39.130 0.00 0.00 0.00 2.74
354 1850 4.543590 AGAGATGGAAAACACGATCAGT 57.456 40.909 0.00 0.00 0.00 3.41
355 1851 5.895928 TCTAGAGATGGAAAACACGATCAG 58.104 41.667 0.00 0.00 0.00 2.90
358 1854 5.869888 GTGTTCTAGAGATGGAAAACACGAT 59.130 40.000 4.75 0.00 37.72 3.73
429 1931 3.885724 TCTTCATCTTGGATGCACGTA 57.114 42.857 0.00 0.00 0.00 3.57
437 1939 5.405935 TCTGAACGATTCTTCATCTTGGA 57.594 39.130 0.00 0.00 29.71 3.53
443 1945 7.121759 ACCATTTTGATCTGAACGATTCTTCAT 59.878 33.333 0.00 0.00 30.84 2.57
452 1954 6.147821 ACTCAGTAACCATTTTGATCTGAACG 59.852 38.462 0.00 0.00 31.63 3.95
466 1968 1.162698 CCTCGTCGACTCAGTAACCA 58.837 55.000 14.70 0.00 0.00 3.67
467 1969 1.397692 CTCCTCGTCGACTCAGTAACC 59.602 57.143 14.70 0.00 0.00 2.85
478 1984 2.489329 TGGTAAAAGGTACTCCTCGTCG 59.511 50.000 0.00 0.00 44.35 5.12
479 1985 3.256631 TGTGGTAAAAGGTACTCCTCGTC 59.743 47.826 0.00 0.00 44.35 4.20
480 1986 3.006217 GTGTGGTAAAAGGTACTCCTCGT 59.994 47.826 0.00 0.00 44.35 4.18
522 2028 0.458716 GTCGGCTGCTCAGTAGTTCC 60.459 60.000 0.00 0.00 0.00 3.62
523 2029 0.243907 TGTCGGCTGCTCAGTAGTTC 59.756 55.000 0.00 0.00 0.00 3.01
525 2031 1.587054 GTGTCGGCTGCTCAGTAGT 59.413 57.895 0.00 0.00 0.00 2.73
526 2032 1.153745 GGTGTCGGCTGCTCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
527 2033 2.646175 GGGTGTCGGCTGCTCAGTA 61.646 63.158 0.00 0.00 0.00 2.74
528 2034 4.008933 GGGTGTCGGCTGCTCAGT 62.009 66.667 0.00 0.00 0.00 3.41
529 2035 4.007644 TGGGTGTCGGCTGCTCAG 62.008 66.667 0.00 0.00 0.00 3.35
530 2036 4.314440 GTGGGTGTCGGCTGCTCA 62.314 66.667 0.00 0.00 0.00 4.26
531 2037 4.008933 AGTGGGTGTCGGCTGCTC 62.009 66.667 0.00 0.00 0.00 4.26
532 2038 4.320456 CAGTGGGTGTCGGCTGCT 62.320 66.667 0.00 0.00 0.00 4.24
538 2044 4.308458 TTCGGCCAGTGGGTGTCG 62.308 66.667 12.15 0.00 36.17 4.35
539 2045 2.668550 GTTCGGCCAGTGGGTGTC 60.669 66.667 12.15 0.00 36.17 3.67
540 2046 2.351924 AATGTTCGGCCAGTGGGTGT 62.352 55.000 12.15 0.00 36.17 4.16
541 2047 1.603455 AATGTTCGGCCAGTGGGTG 60.603 57.895 12.15 0.00 36.17 4.61
542 2048 1.603455 CAATGTTCGGCCAGTGGGT 60.603 57.895 12.15 0.00 36.17 4.51
543 2049 2.342650 CCAATGTTCGGCCAGTGGG 61.343 63.158 12.15 0.00 44.70 4.61
544 2050 3.277133 CCAATGTTCGGCCAGTGG 58.723 61.111 4.20 4.20 43.31 4.00
545 2051 1.875963 GTCCAATGTTCGGCCAGTG 59.124 57.895 2.24 0.00 0.00 3.66
546 2052 1.671054 CGTCCAATGTTCGGCCAGT 60.671 57.895 2.24 0.00 0.00 4.00
547 2053 0.744414 ATCGTCCAATGTTCGGCCAG 60.744 55.000 2.24 0.00 0.00 4.85
548 2054 1.024046 CATCGTCCAATGTTCGGCCA 61.024 55.000 2.24 0.00 0.00 5.36
549 2055 1.721487 CATCGTCCAATGTTCGGCC 59.279 57.895 0.00 0.00 0.00 6.13
550 2056 1.062525 GCATCGTCCAATGTTCGGC 59.937 57.895 0.00 0.00 0.00 5.54
551 2057 1.086696 AAGCATCGTCCAATGTTCGG 58.913 50.000 0.00 0.00 0.00 4.30
552 2058 2.159430 TCAAAGCATCGTCCAATGTTCG 59.841 45.455 0.00 0.00 0.00 3.95
553 2059 3.829886 TCAAAGCATCGTCCAATGTTC 57.170 42.857 0.00 0.00 0.00 3.18
554 2060 3.129287 GGATCAAAGCATCGTCCAATGTT 59.871 43.478 0.00 0.00 0.00 2.71
555 2061 2.684881 GGATCAAAGCATCGTCCAATGT 59.315 45.455 0.00 0.00 0.00 2.71
556 2062 2.684374 TGGATCAAAGCATCGTCCAATG 59.316 45.455 0.00 0.00 36.12 2.82
557 2063 2.947652 CTGGATCAAAGCATCGTCCAAT 59.052 45.455 0.00 0.00 38.41 3.16
558 2064 2.358957 CTGGATCAAAGCATCGTCCAA 58.641 47.619 0.00 0.00 38.41 3.53
559 2065 2.013563 GCTGGATCAAAGCATCGTCCA 61.014 52.381 13.25 0.00 40.52 4.02
560 2066 0.659957 GCTGGATCAAAGCATCGTCC 59.340 55.000 13.25 0.00 40.52 4.79
561 2067 0.302890 CGCTGGATCAAAGCATCGTC 59.697 55.000 17.02 0.00 40.86 4.20
562 2068 1.091771 CCGCTGGATCAAAGCATCGT 61.092 55.000 17.02 0.00 40.86 3.73
563 2069 1.091771 ACCGCTGGATCAAAGCATCG 61.092 55.000 17.02 8.06 40.86 3.84
564 2070 0.659957 GACCGCTGGATCAAAGCATC 59.340 55.000 17.02 11.03 40.86 3.91
565 2071 1.091771 CGACCGCTGGATCAAAGCAT 61.092 55.000 17.02 6.74 40.86 3.79
566 2072 1.741401 CGACCGCTGGATCAAAGCA 60.741 57.895 17.02 0.00 40.86 3.91
567 2073 2.464459 CCGACCGCTGGATCAAAGC 61.464 63.158 9.09 9.09 37.31 3.51
568 2074 2.464459 GCCGACCGCTGGATCAAAG 61.464 63.158 0.00 0.00 0.00 2.77
569 2075 2.435938 GCCGACCGCTGGATCAAA 60.436 61.111 0.00 0.00 0.00 2.69
570 2076 4.467084 GGCCGACCGCTGGATCAA 62.467 66.667 0.00 0.00 37.74 2.57
572 2078 4.593864 GAGGCCGACCGCTGGATC 62.594 72.222 0.00 0.00 42.76 3.36
578 2084 4.083862 AAAGAGGAGGCCGACCGC 62.084 66.667 15.33 15.33 42.76 5.68
579 2085 2.125512 CAAAGAGGAGGCCGACCG 60.126 66.667 14.56 0.00 42.76 4.79
580 2086 1.376037 CACAAAGAGGAGGCCGACC 60.376 63.158 13.01 13.01 0.00 4.79
581 2087 0.670854 GTCACAAAGAGGAGGCCGAC 60.671 60.000 0.00 0.00 0.00 4.79
582 2088 1.118965 TGTCACAAAGAGGAGGCCGA 61.119 55.000 0.00 0.00 0.00 5.54
583 2089 0.036010 ATGTCACAAAGAGGAGGCCG 60.036 55.000 0.00 0.00 0.00 6.13
584 2090 1.457346 CATGTCACAAAGAGGAGGCC 58.543 55.000 0.00 0.00 0.00 5.19
585 2091 0.807496 GCATGTCACAAAGAGGAGGC 59.193 55.000 0.00 0.00 0.00 4.70
586 2092 2.189594 TGCATGTCACAAAGAGGAGG 57.810 50.000 0.00 0.00 0.00 4.30
587 2093 3.079578 ACATGCATGTCACAAAGAGGAG 58.920 45.455 26.61 0.00 35.87 3.69
588 2094 3.144657 ACATGCATGTCACAAAGAGGA 57.855 42.857 26.61 0.00 35.87 3.71
589 2095 3.181517 CGTACATGCATGTCACAAAGAGG 60.182 47.826 34.54 17.14 41.97 3.69
590 2096 3.181517 CCGTACATGCATGTCACAAAGAG 60.182 47.826 34.54 16.79 41.97 2.85
591 2097 2.741517 CCGTACATGCATGTCACAAAGA 59.258 45.455 34.54 13.77 41.97 2.52
592 2098 2.483877 ACCGTACATGCATGTCACAAAG 59.516 45.455 34.54 19.01 41.97 2.77
593 2099 2.482336 GACCGTACATGCATGTCACAAA 59.518 45.455 34.54 15.32 41.97 2.83
594 2100 2.073056 GACCGTACATGCATGTCACAA 58.927 47.619 34.54 15.72 41.97 3.33
595 2101 1.001406 TGACCGTACATGCATGTCACA 59.999 47.619 34.54 22.81 41.97 3.58
596 2102 1.660607 CTGACCGTACATGCATGTCAC 59.339 52.381 34.54 25.90 41.97 3.67
597 2103 1.548269 TCTGACCGTACATGCATGTCA 59.452 47.619 34.54 23.58 41.97 3.58
598 2104 2.293677 TCTGACCGTACATGCATGTC 57.706 50.000 34.54 23.28 41.97 3.06
599 2105 2.168313 TGATCTGACCGTACATGCATGT 59.832 45.455 33.20 33.20 44.48 3.21
600 2106 2.798847 CTGATCTGACCGTACATGCATG 59.201 50.000 25.09 25.09 0.00 4.06
601 2107 2.432146 ACTGATCTGACCGTACATGCAT 59.568 45.455 6.60 0.00 0.00 3.96
602 2108 1.824852 ACTGATCTGACCGTACATGCA 59.175 47.619 6.60 0.00 0.00 3.96
603 2109 2.586258 ACTGATCTGACCGTACATGC 57.414 50.000 6.60 0.00 0.00 4.06
604 2110 3.066760 TGCTACTGATCTGACCGTACATG 59.933 47.826 6.60 0.00 0.00 3.21
605 2111 3.288092 TGCTACTGATCTGACCGTACAT 58.712 45.455 6.60 0.00 0.00 2.29
606 2112 2.718563 TGCTACTGATCTGACCGTACA 58.281 47.619 6.60 0.00 0.00 2.90
607 2113 3.607310 CGATGCTACTGATCTGACCGTAC 60.607 52.174 6.60 0.00 0.00 3.67
608 2114 2.548480 CGATGCTACTGATCTGACCGTA 59.452 50.000 6.60 0.00 0.00 4.02
609 2115 1.335182 CGATGCTACTGATCTGACCGT 59.665 52.381 6.60 0.00 0.00 4.83
610 2116 1.335182 ACGATGCTACTGATCTGACCG 59.665 52.381 6.60 3.37 0.00 4.79
611 2117 2.287909 GGACGATGCTACTGATCTGACC 60.288 54.545 6.60 0.00 0.00 4.02
612 2118 2.359214 TGGACGATGCTACTGATCTGAC 59.641 50.000 6.60 0.00 0.00 3.51
613 2119 2.620585 CTGGACGATGCTACTGATCTGA 59.379 50.000 6.60 0.00 0.00 3.27
614 2120 2.620585 TCTGGACGATGCTACTGATCTG 59.379 50.000 0.00 0.00 0.00 2.90
615 2121 2.621055 GTCTGGACGATGCTACTGATCT 59.379 50.000 0.00 0.00 0.00 2.75
616 2122 2.359214 TGTCTGGACGATGCTACTGATC 59.641 50.000 0.00 0.00 0.00 2.92
617 2123 2.379005 TGTCTGGACGATGCTACTGAT 58.621 47.619 0.00 0.00 0.00 2.90
618 2124 1.834188 TGTCTGGACGATGCTACTGA 58.166 50.000 0.00 0.00 0.00 3.41
619 2125 2.736978 GATGTCTGGACGATGCTACTG 58.263 52.381 0.00 0.00 0.00 2.74
620 2126 1.335182 CGATGTCTGGACGATGCTACT 59.665 52.381 0.00 0.00 0.00 2.57
621 2127 1.600663 CCGATGTCTGGACGATGCTAC 60.601 57.143 0.00 0.00 0.00 3.58
622 2128 0.668535 CCGATGTCTGGACGATGCTA 59.331 55.000 0.00 0.00 0.00 3.49
623 2129 1.439228 CCGATGTCTGGACGATGCT 59.561 57.895 0.00 0.00 0.00 3.79
624 2130 2.240500 GCCGATGTCTGGACGATGC 61.241 63.158 0.00 0.00 0.00 3.91
625 2131 0.873312 CAGCCGATGTCTGGACGATG 60.873 60.000 0.00 0.00 0.00 3.84
626 2132 1.439228 CAGCCGATGTCTGGACGAT 59.561 57.895 0.00 0.00 0.00 3.73
627 2133 2.885113 CAGCCGATGTCTGGACGA 59.115 61.111 0.00 0.00 0.00 4.20
628 2134 2.887568 GCAGCCGATGTCTGGACG 60.888 66.667 0.00 0.00 32.41 4.79
629 2135 2.103042 GTGCAGCCGATGTCTGGAC 61.103 63.158 0.00 0.00 43.61 4.02
630 2136 2.265739 GTGCAGCCGATGTCTGGA 59.734 61.111 0.00 0.00 32.41 3.86
631 2137 2.046988 TGTGCAGCCGATGTCTGG 60.047 61.111 0.00 0.00 32.41 3.86
632 2138 2.393768 GGTGTGCAGCCGATGTCTG 61.394 63.158 0.00 0.00 34.79 3.51
633 2139 2.046892 GGTGTGCAGCCGATGTCT 60.047 61.111 0.00 0.00 0.00 3.41
648 2154 1.456296 TCTGCTATACACACGACGGT 58.544 50.000 0.00 0.00 0.00 4.83
649 2155 2.032924 TGATCTGCTATACACACGACGG 59.967 50.000 0.00 0.00 0.00 4.79
650 2156 3.334272 TGATCTGCTATACACACGACG 57.666 47.619 0.00 0.00 0.00 5.12
651 2157 5.281727 TGATTGATCTGCTATACACACGAC 58.718 41.667 0.00 0.00 0.00 4.34
652 2158 5.514274 TGATTGATCTGCTATACACACGA 57.486 39.130 0.00 0.00 0.00 4.35
653 2159 5.922544 TCATGATTGATCTGCTATACACACG 59.077 40.000 0.00 0.00 0.00 4.49
654 2160 6.927936 ACTCATGATTGATCTGCTATACACAC 59.072 38.462 0.00 0.00 0.00 3.82
655 2161 7.015001 AGACTCATGATTGATCTGCTATACACA 59.985 37.037 0.00 0.00 0.00 3.72
656 2162 7.377398 AGACTCATGATTGATCTGCTATACAC 58.623 38.462 0.00 0.00 0.00 2.90
657 2163 7.536159 AGACTCATGATTGATCTGCTATACA 57.464 36.000 0.00 0.00 0.00 2.29
658 2164 7.696035 CGTAGACTCATGATTGATCTGCTATAC 59.304 40.741 0.00 0.00 0.00 1.47
659 2165 7.627300 GCGTAGACTCATGATTGATCTGCTATA 60.627 40.741 0.00 0.00 0.00 1.31
660 2166 6.619744 CGTAGACTCATGATTGATCTGCTAT 58.380 40.000 0.00 0.00 0.00 2.97
661 2167 5.563671 GCGTAGACTCATGATTGATCTGCTA 60.564 44.000 0.00 0.00 0.00 3.49
662 2168 4.795635 GCGTAGACTCATGATTGATCTGCT 60.796 45.833 0.00 0.00 0.00 4.24
663 2169 3.428198 GCGTAGACTCATGATTGATCTGC 59.572 47.826 0.00 0.57 0.00 4.26
664 2170 4.869215 AGCGTAGACTCATGATTGATCTG 58.131 43.478 0.00 0.00 0.00 2.90
665 2171 6.832520 ATAGCGTAGACTCATGATTGATCT 57.167 37.500 0.00 0.10 0.00 2.75
666 2172 6.684979 CGTATAGCGTAGACTCATGATTGATC 59.315 42.308 0.00 0.00 35.54 2.92
667 2173 6.403746 CCGTATAGCGTAGACTCATGATTGAT 60.404 42.308 0.00 0.00 39.32 2.57
668 2174 5.106673 CCGTATAGCGTAGACTCATGATTGA 60.107 44.000 0.00 0.00 39.32 2.57
669 2175 5.089411 CCGTATAGCGTAGACTCATGATTG 58.911 45.833 0.00 0.00 39.32 2.67
670 2176 4.760715 ACCGTATAGCGTAGACTCATGATT 59.239 41.667 0.00 0.00 39.32 2.57
671 2177 4.325119 ACCGTATAGCGTAGACTCATGAT 58.675 43.478 0.00 0.00 39.32 2.45
686 2192 4.202182 GCCTGAAACCTCACATACCGTATA 60.202 45.833 0.00 0.00 0.00 1.47
687 2193 3.431766 GCCTGAAACCTCACATACCGTAT 60.432 47.826 0.00 0.00 0.00 3.06
701 2209 2.960170 CAGCCAGCTGCCTGAAAC 59.040 61.111 19.71 0.00 41.77 2.78
747 2258 1.590792 GGCGCGAAGTAGCCGTATT 60.591 57.895 12.10 0.00 42.42 1.89
788 2299 0.963225 AAATAACCCAGCCGCGTTTT 59.037 45.000 4.92 0.00 0.00 2.43
805 2352 1.258458 CGAACGGTTCAGCGTGTAAAA 59.742 47.619 19.91 0.00 0.00 1.52
820 2367 3.403057 CGTGTGCTGTCCCGAACG 61.403 66.667 0.00 0.00 0.00 3.95
919 2549 1.210545 CGCTTTGCTGTTGCCTGTTG 61.211 55.000 0.00 0.00 38.71 3.33
921 2551 1.823470 TCGCTTTGCTGTTGCCTGT 60.823 52.632 0.00 0.00 38.71 4.00
927 2557 1.166531 GGTGAGGTCGCTTTGCTGTT 61.167 55.000 0.00 0.00 0.00 3.16
928 2558 1.598130 GGTGAGGTCGCTTTGCTGT 60.598 57.895 0.00 0.00 0.00 4.40
930 2560 1.302033 CTGGTGAGGTCGCTTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
932 2562 2.671177 CGCTGGTGAGGTCGCTTTG 61.671 63.158 0.00 0.00 0.00 2.77
933 2563 2.357517 CGCTGGTGAGGTCGCTTT 60.358 61.111 0.00 0.00 0.00 3.51
941 2571 0.445436 GATCTTTGTGCGCTGGTGAG 59.555 55.000 9.73 0.21 0.00 3.51
948 2578 1.063174 GATGAGGTGATCTTTGTGCGC 59.937 52.381 0.00 0.00 0.00 6.09
1114 4683 2.725312 CCGCCTGAGAGCAAGGCTA 61.725 63.158 12.31 0.00 45.86 3.93
1117 4686 4.093291 AGCCGCCTGAGAGCAAGG 62.093 66.667 0.00 0.00 0.00 3.61
1119 4688 2.663075 ATGAGCCGCCTGAGAGCAA 61.663 57.895 0.00 0.00 0.00 3.91
1120 4689 3.079478 ATGAGCCGCCTGAGAGCA 61.079 61.111 0.00 0.00 0.00 4.26
1121 4690 2.588314 CATGAGCCGCCTGAGAGC 60.588 66.667 0.00 0.00 0.00 4.09
1132 4701 0.473326 AGGAGGAAGATGGCATGAGC 59.527 55.000 3.81 0.00 41.10 4.26
1161 4741 2.093306 TTCATGGCGATTGAGACGTT 57.907 45.000 0.00 0.00 0.00 3.99
1163 4745 2.852143 GCATTTCATGGCGATTGAGACG 60.852 50.000 0.00 0.00 0.00 4.18
1199 4807 3.141002 GCAACCTGCACACATCATAAG 57.859 47.619 0.00 0.00 44.26 1.73
1597 5227 1.301087 CCCTTCACACGTACGGCAA 60.301 57.895 21.06 5.34 0.00 4.52
1679 5326 8.336801 AGGGTGATTTTATTGACAAAGAGTAC 57.663 34.615 0.00 0.00 0.00 2.73
1682 5329 8.143835 ACAAAGGGTGATTTTATTGACAAAGAG 58.856 33.333 0.00 0.00 0.00 2.85
1683 5330 8.017418 ACAAAGGGTGATTTTATTGACAAAGA 57.983 30.769 0.00 0.00 0.00 2.52
1684 5331 7.114811 CGACAAAGGGTGATTTTATTGACAAAG 59.885 37.037 0.00 0.00 0.00 2.77
1685 5332 6.920758 CGACAAAGGGTGATTTTATTGACAAA 59.079 34.615 0.00 0.00 0.00 2.83
1686 5333 6.263392 TCGACAAAGGGTGATTTTATTGACAA 59.737 34.615 0.00 0.00 0.00 3.18
1687 5334 5.765677 TCGACAAAGGGTGATTTTATTGACA 59.234 36.000 0.00 0.00 0.00 3.58
1688 5335 6.249035 TCGACAAAGGGTGATTTTATTGAC 57.751 37.500 0.00 0.00 0.00 3.18
1689 5336 6.885952 TTCGACAAAGGGTGATTTTATTGA 57.114 33.333 0.00 0.00 0.00 2.57
1690 5337 7.938563 TTTTCGACAAAGGGTGATTTTATTG 57.061 32.000 0.00 0.00 0.00 1.90
1720 5367 7.432148 AGTACATAACCCATTCACAGTATGA 57.568 36.000 0.00 0.00 39.69 2.15
1721 5368 9.778741 ATAAGTACATAACCCATTCACAGTATG 57.221 33.333 0.00 0.00 46.00 2.39
1722 5369 9.778741 CATAAGTACATAACCCATTCACAGTAT 57.221 33.333 0.00 0.00 0.00 2.12
1723 5370 8.764558 ACATAAGTACATAACCCATTCACAGTA 58.235 33.333 0.00 0.00 0.00 2.74
1724 5371 7.630082 ACATAAGTACATAACCCATTCACAGT 58.370 34.615 0.00 0.00 0.00 3.55
1725 5372 8.397906 CAACATAAGTACATAACCCATTCACAG 58.602 37.037 0.00 0.00 0.00 3.66
1726 5373 7.885922 ACAACATAAGTACATAACCCATTCACA 59.114 33.333 0.00 0.00 0.00 3.58
1727 5374 8.276252 ACAACATAAGTACATAACCCATTCAC 57.724 34.615 0.00 0.00 0.00 3.18
1730 5377 9.349713 CCATACAACATAAGTACATAACCCATT 57.650 33.333 0.00 0.00 0.00 3.16
1731 5378 8.499406 ACCATACAACATAAGTACATAACCCAT 58.501 33.333 0.00 0.00 0.00 4.00
1732 5379 7.771361 CACCATACAACATAAGTACATAACCCA 59.229 37.037 0.00 0.00 0.00 4.51
1733 5380 7.988599 TCACCATACAACATAAGTACATAACCC 59.011 37.037 0.00 0.00 0.00 4.11
1734 5381 8.951787 TCACCATACAACATAAGTACATAACC 57.048 34.615 0.00 0.00 0.00 2.85
1735 5382 9.595823 ACTCACCATACAACATAAGTACATAAC 57.404 33.333 0.00 0.00 0.00 1.89
1737 5384 9.594478 CAACTCACCATACAACATAAGTACATA 57.406 33.333 0.00 0.00 0.00 2.29
1738 5385 8.318412 TCAACTCACCATACAACATAAGTACAT 58.682 33.333 0.00 0.00 0.00 2.29
1739 5386 7.672240 TCAACTCACCATACAACATAAGTACA 58.328 34.615 0.00 0.00 0.00 2.90
1740 5387 8.604035 CATCAACTCACCATACAACATAAGTAC 58.396 37.037 0.00 0.00 0.00 2.73
1741 5388 8.536175 TCATCAACTCACCATACAACATAAGTA 58.464 33.333 0.00 0.00 0.00 2.24
1742 5389 7.394016 TCATCAACTCACCATACAACATAAGT 58.606 34.615 0.00 0.00 0.00 2.24
1743 5390 7.848223 TCATCAACTCACCATACAACATAAG 57.152 36.000 0.00 0.00 0.00 1.73
1744 5391 7.828717 ACATCATCAACTCACCATACAACATAA 59.171 33.333 0.00 0.00 0.00 1.90
1745 5392 7.280652 CACATCATCAACTCACCATACAACATA 59.719 37.037 0.00 0.00 0.00 2.29
1746 5393 6.094464 CACATCATCAACTCACCATACAACAT 59.906 38.462 0.00 0.00 0.00 2.71
1747 5394 5.412286 CACATCATCAACTCACCATACAACA 59.588 40.000 0.00 0.00 0.00 3.33
1748 5395 5.643348 TCACATCATCAACTCACCATACAAC 59.357 40.000 0.00 0.00 0.00 3.32
1749 5396 5.803552 TCACATCATCAACTCACCATACAA 58.196 37.500 0.00 0.00 0.00 2.41
1750 5397 5.419239 TCACATCATCAACTCACCATACA 57.581 39.130 0.00 0.00 0.00 2.29
1751 5398 5.819379 ACATCACATCATCAACTCACCATAC 59.181 40.000 0.00 0.00 0.00 2.39
1752 5399 5.993055 ACATCACATCATCAACTCACCATA 58.007 37.500 0.00 0.00 0.00 2.74
1753 5400 4.851843 ACATCACATCATCAACTCACCAT 58.148 39.130 0.00 0.00 0.00 3.55
1754 5401 4.256110 GACATCACATCATCAACTCACCA 58.744 43.478 0.00 0.00 0.00 4.17
1755 5402 4.256110 TGACATCACATCATCAACTCACC 58.744 43.478 0.00 0.00 0.00 4.02
1756 5403 4.331992 CCTGACATCACATCATCAACTCAC 59.668 45.833 0.00 0.00 0.00 3.51
1757 5404 4.510571 CCTGACATCACATCATCAACTCA 58.489 43.478 0.00 0.00 0.00 3.41
1758 5405 3.875727 CCCTGACATCACATCATCAACTC 59.124 47.826 0.00 0.00 0.00 3.01
1763 5410 2.336945 TGCCCTGACATCACATCATC 57.663 50.000 0.00 0.00 0.00 2.92
1766 5413 2.408271 TCTTGCCCTGACATCACATC 57.592 50.000 0.00 0.00 0.00 3.06
1788 5435 5.729974 AAGAAGGAGAAAAACGTACACAC 57.270 39.130 0.00 0.00 0.00 3.82
1789 5436 6.746745 AAAAGAAGGAGAAAAACGTACACA 57.253 33.333 0.00 0.00 0.00 3.72
1833 5480 4.241590 TGAAATGCAGAGCGACATTTTT 57.758 36.364 9.54 0.00 44.36 1.94
1834 5481 3.921119 TGAAATGCAGAGCGACATTTT 57.079 38.095 9.54 0.00 44.36 1.82
1835 5482 3.181493 GGATGAAATGCAGAGCGACATTT 60.181 43.478 8.39 8.39 46.37 2.32
1857 5513 3.554934 TGGCCAGCCATAGAAATACAAG 58.445 45.455 7.43 0.00 41.89 3.16
1882 5538 0.536460 TTCAAAACCAGAGGCCGACC 60.536 55.000 0.00 0.00 0.00 4.79
1884 5540 3.426787 TTATTCAAAACCAGAGGCCGA 57.573 42.857 0.00 0.00 0.00 5.54
1893 5549 9.949174 AGCAAACATGAATTTTTATTCAAAACC 57.051 25.926 0.00 0.00 42.95 3.27
1911 5567 9.899661 TGTTGTAGTATAAGGAATAGCAAACAT 57.100 29.630 0.00 0.00 0.00 2.71
1913 5569 9.595823 TCTGTTGTAGTATAAGGAATAGCAAAC 57.404 33.333 0.00 0.00 0.00 2.93
1950 5606 2.159338 CCACAGGAATCGGCTGAAATTG 60.159 50.000 0.00 0.00 0.00 2.32
1954 5610 0.250234 CTCCACAGGAATCGGCTGAA 59.750 55.000 0.00 0.00 0.00 3.02
1966 5622 0.994995 CGCATTCGTCTTCTCCACAG 59.005 55.000 0.00 0.00 0.00 3.66
1970 5626 0.095417 GTTGCGCATTCGTCTTCTCC 59.905 55.000 12.75 0.00 38.14 3.71
1993 5649 1.134401 CACTGCGGTTCCCATGAGTAT 60.134 52.381 0.00 0.00 0.00 2.12
1995 5651 1.003355 CACTGCGGTTCCCATGAGT 60.003 57.895 0.00 0.00 0.00 3.41
2015 5671 1.170919 TACTCCCATCTAGCGGCGAC 61.171 60.000 12.98 1.23 0.00 5.19
2016 5672 0.466739 TTACTCCCATCTAGCGGCGA 60.467 55.000 12.98 0.00 0.00 5.54
2018 5674 1.271102 CTCTTACTCCCATCTAGCGGC 59.729 57.143 0.00 0.00 0.00 6.53
2020 5676 3.482436 ACTCTCTTACTCCCATCTAGCG 58.518 50.000 0.00 0.00 0.00 4.26
2027 5683 1.678123 CCGTCGACTCTCTTACTCCCA 60.678 57.143 14.70 0.00 0.00 4.37
2044 5700 3.379445 CACCTCTACCCGCACCGT 61.379 66.667 0.00 0.00 0.00 4.83
2056 5712 1.661341 GTGATCATGCCTCACACCTC 58.339 55.000 18.08 0.00 42.08 3.85
2062 5718 1.153309 CAGCGGTGATCATGCCTCA 60.153 57.895 9.50 0.00 0.00 3.86
2066 5722 3.009140 CGACAGCGGTGATCATGC 58.991 61.111 23.44 13.36 0.00 4.06
2078 5734 2.060980 CCCTCCCCTTCTCCGACAG 61.061 68.421 0.00 0.00 0.00 3.51
2081 5737 1.301913 ATACCCCTCCCCTTCTCCGA 61.302 60.000 0.00 0.00 0.00 4.55
2099 5755 1.420514 TCGTCTCGGATGTCCCTCTAT 59.579 52.381 0.00 0.00 0.00 1.98
2109 5765 1.401148 CGAGTTGTTGTCGTCTCGGAT 60.401 52.381 0.00 0.00 43.67 4.18
2125 5781 3.695060 ACGAGTCATATCCTTTGTCGAGT 59.305 43.478 0.00 0.00 0.00 4.18
2129 5785 5.696724 CCCAATACGAGTCATATCCTTTGTC 59.303 44.000 0.00 0.00 0.00 3.18
2131 5787 4.452455 GCCCAATACGAGTCATATCCTTTG 59.548 45.833 0.00 0.00 0.00 2.77
2133 5789 3.306088 CGCCCAATACGAGTCATATCCTT 60.306 47.826 0.00 0.00 0.00 3.36
2138 5794 0.677288 CCCGCCCAATACGAGTCATA 59.323 55.000 0.00 0.00 0.00 2.15
2217 5873 1.214217 GGCTACCCTCCCTTAGCTTT 58.786 55.000 0.00 0.00 40.57 3.51
2219 5875 1.457831 CGGCTACCCTCCCTTAGCT 60.458 63.158 0.00 0.00 40.57 3.32
2224 5880 1.152440 CATCTCGGCTACCCTCCCT 60.152 63.158 0.00 0.00 0.00 4.20
2244 5901 3.375922 CACTCCTACGTCTTCCTCTTCTC 59.624 52.174 0.00 0.00 0.00 2.87
2245 5902 3.009253 TCACTCCTACGTCTTCCTCTTCT 59.991 47.826 0.00 0.00 0.00 2.85
2268 5925 1.909700 TTCCTCGCATCAGCCTTTTT 58.090 45.000 0.00 0.00 37.52 1.94
2282 5939 6.625873 ATGAGTCAACTGTTTCTTTTCCTC 57.374 37.500 0.00 0.00 0.00 3.71
2290 5947 6.037610 AGTCACTTGAATGAGTCAACTGTTTC 59.962 38.462 0.00 0.00 41.47 2.78
2293 5950 5.028549 AGTCACTTGAATGAGTCAACTGT 57.971 39.130 0.00 0.00 41.47 3.55
2294 5951 5.588568 GAGTCACTTGAATGAGTCAACTG 57.411 43.478 0.00 0.00 45.01 3.16
2299 5956 5.971763 ACCTATGAGTCACTTGAATGAGTC 58.028 41.667 0.00 4.04 45.60 3.36
2300 5957 6.212388 AGAACCTATGAGTCACTTGAATGAGT 59.788 38.462 0.00 0.00 34.86 3.41
2301 5958 6.638610 AGAACCTATGAGTCACTTGAATGAG 58.361 40.000 0.00 0.00 0.00 2.90
2302 5959 6.351371 GGAGAACCTATGAGTCACTTGAATGA 60.351 42.308 0.00 0.00 0.00 2.57
2303 5960 5.814705 GGAGAACCTATGAGTCACTTGAATG 59.185 44.000 0.00 0.00 0.00 2.67
2304 5961 5.104735 GGGAGAACCTATGAGTCACTTGAAT 60.105 44.000 0.00 0.00 35.85 2.57
2305 5962 4.223032 GGGAGAACCTATGAGTCACTTGAA 59.777 45.833 0.00 0.00 35.85 2.69
2306 5963 3.769844 GGGAGAACCTATGAGTCACTTGA 59.230 47.826 0.00 0.00 35.85 3.02
2307 5964 4.130286 GGGAGAACCTATGAGTCACTTG 57.870 50.000 0.00 0.00 35.85 3.16
2323 5980 3.190535 GTGCATTTCGCTTTTTAGGGAGA 59.809 43.478 0.00 0.00 43.06 3.71
2379 6036 1.002134 GGCAGTAGCTTGGGCAGAA 60.002 57.895 0.00 0.00 41.70 3.02
2381 6038 1.001641 AAGGCAGTAGCTTGGGCAG 60.002 57.895 0.00 0.00 41.70 4.85
2388 6045 1.139058 CCGTATTGGAAGGCAGTAGCT 59.861 52.381 0.00 0.00 42.00 3.32
2401 6058 5.031066 TCCCTGGAAGAAATACCGTATTG 57.969 43.478 4.52 0.00 34.07 1.90
2420 6077 7.013942 ACAACCAGAAACTAAAGTGTATTTCCC 59.986 37.037 0.00 0.00 32.56 3.97
2421 6078 7.937649 ACAACCAGAAACTAAAGTGTATTTCC 58.062 34.615 0.00 0.00 32.56 3.13
2513 6170 9.737427 TGCAAAACAAAATCGAGTTTAATCTAA 57.263 25.926 10.90 0.00 36.98 2.10
2514 6171 9.176181 GTGCAAAACAAAATCGAGTTTAATCTA 57.824 29.630 10.90 0.00 36.98 1.98
2515 6172 7.920682 AGTGCAAAACAAAATCGAGTTTAATCT 59.079 29.630 10.90 1.21 36.98 2.40
2516 6173 8.061125 AGTGCAAAACAAAATCGAGTTTAATC 57.939 30.769 10.90 0.00 36.98 1.75
2517 6174 9.180678 CTAGTGCAAAACAAAATCGAGTTTAAT 57.819 29.630 10.90 0.00 36.98 1.40
2518 6175 8.185505 ACTAGTGCAAAACAAAATCGAGTTTAA 58.814 29.630 10.90 0.00 36.98 1.52
2519 6176 7.699566 ACTAGTGCAAAACAAAATCGAGTTTA 58.300 30.769 10.90 0.00 36.98 2.01
2520 6177 6.560711 ACTAGTGCAAAACAAAATCGAGTTT 58.439 32.000 4.77 4.77 39.46 2.66
2521 6178 6.131544 ACTAGTGCAAAACAAAATCGAGTT 57.868 33.333 0.00 0.00 0.00 3.01
2522 6179 5.751243 ACTAGTGCAAAACAAAATCGAGT 57.249 34.783 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.