Multiple sequence alignment - TraesCS4A01G365400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G365400 chr4A 100.000 2609 0 0 1 2609 639024347 639026955 0.000000e+00 4819.0
1 TraesCS4A01G365400 chr4A 77.574 272 53 6 251 520 728512748 728513013 9.670000e-35 158.0
2 TraesCS4A01G365400 chr4A 78.351 194 34 7 282 472 609923524 609923336 4.560000e-23 119.0
3 TraesCS4A01G365400 chr5D 87.594 2128 147 46 2 2073 533115488 533113422 0.000000e+00 2359.0
4 TraesCS4A01G365400 chr5B 93.000 1100 55 11 806 1897 673045355 673044270 0.000000e+00 1585.0
5 TraesCS4A01G365400 chr5B 83.974 624 54 17 2 617 673046539 673045954 8.160000e-155 556.0
6 TraesCS4A01G365400 chr5B 85.492 193 13 6 609 787 673045742 673045551 1.230000e-43 187.0
7 TraesCS4A01G365400 chr1D 94.824 541 21 2 2075 2609 246064873 246064334 0.000000e+00 837.0
8 TraesCS4A01G365400 chr7A 93.900 541 26 2 2075 2609 296505648 296505109 0.000000e+00 809.0
9 TraesCS4A01G365400 chr7A 82.397 267 42 3 243 507 719507229 719507492 7.260000e-56 228.0
10 TraesCS4A01G365400 chr6D 95.188 478 17 1 2075 2546 7185620 7185143 0.000000e+00 750.0
11 TraesCS4A01G365400 chr6D 92.188 64 4 1 2546 2609 7175514 7175452 3.580000e-14 89.8
12 TraesCS4A01G365400 chr2A 92.857 462 26 2 2154 2609 744689249 744688789 0.000000e+00 664.0
13 TraesCS4A01G365400 chr2A 100.000 85 0 0 2075 2159 744698432 744698348 9.670000e-35 158.0
14 TraesCS4A01G365400 chr3D 81.154 260 45 3 251 508 123617093 123617350 3.400000e-49 206.0
15 TraesCS4A01G365400 chr3D 79.630 270 44 9 251 517 8924830 8925091 1.590000e-42 183.0
16 TraesCS4A01G365400 chr3D 78.077 260 47 7 251 508 488232740 488232489 3.480000e-34 156.0
17 TraesCS4A01G365400 chr6A 83.036 224 33 4 277 498 459714267 459714487 5.700000e-47 198.0
18 TraesCS4A01G365400 chr2B 80.905 199 35 2 308 505 147493928 147493732 1.250000e-33 154.0
19 TraesCS4A01G365400 chr5A 74.910 279 55 10 251 519 445152361 445152088 2.120000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G365400 chr4A 639024347 639026955 2608 False 4819 4819 100.000000 1 2609 1 chr4A.!!$F1 2608
1 TraesCS4A01G365400 chr5D 533113422 533115488 2066 True 2359 2359 87.594000 2 2073 1 chr5D.!!$R1 2071
2 TraesCS4A01G365400 chr5B 673044270 673046539 2269 True 776 1585 87.488667 2 1897 3 chr5B.!!$R1 1895
3 TraesCS4A01G365400 chr1D 246064334 246064873 539 True 837 837 94.824000 2075 2609 1 chr1D.!!$R1 534
4 TraesCS4A01G365400 chr7A 296505109 296505648 539 True 809 809 93.900000 2075 2609 1 chr7A.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 337 0.093875 CTTATAAACGCACGCGCACA 59.906 50.0 12.02 0.0 44.19 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 2100 1.050767 GCACGTTACTCTGTGTCGAC 58.949 55.0 9.11 9.11 38.36 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.026607 GTGCAGCTAGAAAAATATGGTTGTAAA 58.973 33.333 0.00 0.00 0.00 2.01
34 35 8.580720 TGCAGCTAGAAAAATATGGTTGTAAAA 58.419 29.630 0.00 0.00 0.00 1.52
130 133 5.766150 TCGCCCATTATATCCAAAAACAG 57.234 39.130 0.00 0.00 0.00 3.16
171 174 7.759886 CAGAGGAGTACTTTCGAACAATAATCA 59.240 37.037 0.00 0.00 0.00 2.57
178 181 9.620660 GTACTTTCGAACAATAATCAAATGGTT 57.379 29.630 0.00 0.00 0.00 3.67
192 195 5.599732 TCAAATGGTTTTCAATCTGGTGTG 58.400 37.500 0.00 0.00 0.00 3.82
201 204 8.739972 GGTTTTCAATCTGGTGTGATATAACTT 58.260 33.333 0.00 0.00 0.00 2.66
209 212 4.570369 TGGTGTGATATAACTTGCATGTCG 59.430 41.667 5.61 0.00 0.00 4.35
224 232 6.466308 TGCATGTCGTTACTATATCATTGC 57.534 37.500 0.00 0.00 0.00 3.56
248 256 3.841643 TGTACTTGGCGCTCTTAACTAC 58.158 45.455 7.64 2.95 0.00 2.73
290 303 5.531287 ACAGACGTAGATGCTCATACATACA 59.469 40.000 0.00 0.00 0.00 2.29
291 304 6.207614 ACAGACGTAGATGCTCATACATACAT 59.792 38.462 0.00 0.00 0.00 2.29
320 333 1.855978 TCATCCTTATAAACGCACGCG 59.144 47.619 10.36 10.36 46.03 6.01
324 337 0.093875 CTTATAAACGCACGCGCACA 59.906 50.000 12.02 0.00 44.19 4.57
326 339 1.282930 TATAAACGCACGCGCACACA 61.283 50.000 12.02 0.00 44.19 3.72
351 364 0.469331 TACCCTATGAGCACCTCCGG 60.469 60.000 0.00 0.00 0.00 5.14
363 376 2.363018 CTCCGGGAGACTGAGCCA 60.363 66.667 19.57 0.00 39.98 4.75
373 386 2.935201 GAGACTGAGCCAACACATCATC 59.065 50.000 0.00 0.00 0.00 2.92
378 391 3.753815 TGAGCCAACACATCATCTTGAA 58.246 40.909 0.00 0.00 0.00 2.69
390 403 7.080099 CACATCATCTTGAAATTGACGAACTT 58.920 34.615 0.00 0.00 0.00 2.66
406 419 0.839946 ACTTGCCACAGACACCTTCT 59.160 50.000 0.00 0.00 33.33 2.85
414 427 4.804261 GCCACAGACACCTTCTTAGTCAAT 60.804 45.833 0.00 0.00 34.80 2.57
450 463 1.374125 CTGAACGCACATCACCGGA 60.374 57.895 9.46 0.00 0.00 5.14
493 506 1.184322 ATGCGACCACCAATGCCAAA 61.184 50.000 0.00 0.00 0.00 3.28
509 522 3.689161 TGCCAAATCTATGACTTGAACCG 59.311 43.478 0.00 0.00 0.00 4.44
525 538 1.228429 CCGTGTGGGTTGGTTCCAT 60.228 57.895 0.00 0.00 36.58 3.41
620 858 3.885724 AAAAGAGAGACTAGAGCAGGC 57.114 47.619 0.00 0.00 0.00 4.85
648 886 6.729187 AGTTGCAATCTTCACTAAACTGAAC 58.271 36.000 0.59 0.00 0.00 3.18
679 917 8.866956 GGTTTTCTAAAGCAAATGAGATTCATG 58.133 33.333 0.00 0.00 37.15 3.07
692 930 6.312141 TGAGATTCATGACCTTAATCCACA 57.688 37.500 0.00 0.00 31.35 4.17
922 1351 3.136123 GAGCGGGCACATGCACAT 61.136 61.111 6.95 0.00 46.93 3.21
924 1353 2.051804 GAGCGGGCACATGCACATAC 62.052 60.000 6.95 0.00 46.93 2.39
925 1354 2.708865 CGGGCACATGCACATACG 59.291 61.111 6.95 0.00 46.93 3.06
968 1399 2.305927 ACCACTCCCAAGACAAATCGAT 59.694 45.455 0.00 0.00 0.00 3.59
990 1421 3.077556 AGGCCGGAGCGAGTTCAT 61.078 61.111 5.05 0.00 41.24 2.57
1049 1480 2.950990 AGTGTCAACCTCCTATCCCT 57.049 50.000 0.00 0.00 0.00 4.20
1050 1481 2.753247 AGTGTCAACCTCCTATCCCTC 58.247 52.381 0.00 0.00 0.00 4.30
1051 1482 1.763545 GTGTCAACCTCCTATCCCTCC 59.236 57.143 0.00 0.00 0.00 4.30
1052 1483 1.651770 TGTCAACCTCCTATCCCTCCT 59.348 52.381 0.00 0.00 0.00 3.69
1053 1484 2.321719 GTCAACCTCCTATCCCTCCTC 58.678 57.143 0.00 0.00 0.00 3.71
1054 1485 1.220750 TCAACCTCCTATCCCTCCTCC 59.779 57.143 0.00 0.00 0.00 4.30
1077 1508 2.757508 CTCCTCCTCTCCAGCGCA 60.758 66.667 11.47 0.00 0.00 6.09
1087 1518 4.056125 CCAGCGCACTCCTCGTCA 62.056 66.667 11.47 0.00 0.00 4.35
1178 1609 2.447379 AGGCATCCCGGAGAGCAT 60.447 61.111 0.73 6.50 35.76 3.79
1281 1712 1.669115 CCAGCTGAACCTGGTCACG 60.669 63.158 17.39 0.00 45.87 4.35
1548 1979 3.717294 GTCATGGGGGCCGTCACT 61.717 66.667 0.00 0.00 0.00 3.41
1569 2000 4.473520 CTCATCAAGCGGGCCGGT 62.474 66.667 27.15 27.15 40.00 5.28
1634 2065 4.855388 TCGCCGCGAGAAATAATACTAATC 59.145 41.667 12.39 0.00 0.00 1.75
1639 2070 5.347907 CGCGAGAAATAATACTAATCCCCAC 59.652 44.000 0.00 0.00 0.00 4.61
1659 2090 3.015677 GCACGTGTTGCGGTAACA 58.984 55.556 18.38 7.59 46.62 2.41
1687 2118 2.394545 TGTCGACACAGAGTAACGTG 57.605 50.000 15.76 0.00 39.10 4.49
1705 2136 6.371809 AACGTGCTTCTTGATGTTCTTTTA 57.628 33.333 0.00 0.00 0.00 1.52
1730 2161 3.531538 TGATCGACCAGGTTTTCTATGC 58.468 45.455 0.00 0.00 0.00 3.14
1834 2272 0.320683 GGTGCTTGCCAATTTGGGAC 60.321 55.000 17.03 4.25 37.69 4.46
1848 2286 7.629130 CCAATTTGGGACATTTTATTAATGCG 58.371 34.615 7.60 0.00 39.30 4.73
1875 2314 8.817092 AAATTTTATTTTCCGTGGGATCTCTA 57.183 30.769 0.00 0.00 0.00 2.43
1918 2357 9.836864 AAAAGAATTGAGCAGAAAATAAAACCT 57.163 25.926 0.00 0.00 0.00 3.50
1944 2383 8.358895 TGCTGAAAATATCAAAGAACACATGAA 58.641 29.630 0.00 0.00 37.67 2.57
1998 2442 9.845740 AGATTGCTTACCACATAATATGTACAA 57.154 29.630 5.49 5.00 42.70 2.41
2059 2513 4.885413 AGTGTACGTAATGTTGGTAGCAA 58.115 39.130 2.54 2.54 0.00 3.91
2073 2527 2.484264 GGTAGCAAATGAGTTCACGCTT 59.516 45.455 7.55 0.00 33.22 4.68
2263 2717 2.176045 TGGAGCATCGTAGTTCCTTCA 58.824 47.619 12.17 0.00 34.37 3.02
2289 2749 4.081420 GGTCTTTGTCTGGAGATTAGCTCA 60.081 45.833 0.00 0.00 45.81 4.26
2368 2828 2.656646 CCACTCTGCGGCTGTGTA 59.343 61.111 13.02 0.00 0.00 2.90
2404 2864 6.863126 GCCATGCATTAATATCCTGTACAAAC 59.137 38.462 0.00 0.00 0.00 2.93
2439 2899 3.264193 TGGGCACTTACTGATGACAATCT 59.736 43.478 0.00 0.00 33.61 2.40
2515 2975 5.303845 TGAAATGAATGATGTGTTGGACCAA 59.696 36.000 1.69 1.69 0.00 3.67
2566 3026 9.136323 ACATTATGGTCTATATGATATGCGAGA 57.864 33.333 0.00 0.00 0.00 4.04
2573 3033 7.414208 GGTCTATATGATATGCGAGACGAAAGA 60.414 40.741 7.42 0.00 35.27 2.52
2604 3064 6.409524 TGAAGCAATCTTTCAAAGTCCATT 57.590 33.333 0.00 0.00 31.48 3.16
2605 3065 7.523293 TGAAGCAATCTTTCAAAGTCCATTA 57.477 32.000 0.00 0.00 31.48 1.90
2606 3066 8.125978 TGAAGCAATCTTTCAAAGTCCATTAT 57.874 30.769 0.00 0.00 31.48 1.28
2607 3067 8.246180 TGAAGCAATCTTTCAAAGTCCATTATC 58.754 33.333 0.00 0.00 31.48 1.75
2608 3068 7.707624 AGCAATCTTTCAAAGTCCATTATCA 57.292 32.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.860022 ACCATATTTTTCTAGCTGCACCT 58.140 39.130 1.02 0.00 0.00 4.00
33 34 3.382048 ACCTACGAAAGCGAGTTCTTT 57.618 42.857 0.00 0.00 41.64 2.52
34 35 3.057734 CAACCTACGAAAGCGAGTTCTT 58.942 45.455 0.00 0.00 41.64 2.52
36 37 2.401351 ACAACCTACGAAAGCGAGTTC 58.599 47.619 0.00 0.00 41.64 3.01
99 101 7.447374 TGGATATAATGGGCGAAGTTTTATG 57.553 36.000 0.00 0.00 0.00 1.90
100 102 8.472007 TTTGGATATAATGGGCGAAGTTTTAT 57.528 30.769 0.00 0.00 0.00 1.40
101 103 7.883391 TTTGGATATAATGGGCGAAGTTTTA 57.117 32.000 0.00 0.00 0.00 1.52
102 104 6.783708 TTTGGATATAATGGGCGAAGTTTT 57.216 33.333 0.00 0.00 0.00 2.43
140 143 6.853720 TGTTCGAAAGTACTCCTCTGATAAG 58.146 40.000 0.00 0.00 32.11 1.73
159 162 9.956797 GATTGAAAACCATTTGATTATTGTTCG 57.043 29.630 0.00 0.00 0.00 3.95
171 174 5.867903 TCACACCAGATTGAAAACCATTT 57.132 34.783 0.00 0.00 0.00 2.32
178 181 7.392953 TGCAAGTTATATCACACCAGATTGAAA 59.607 33.333 0.00 0.00 0.00 2.69
181 184 6.682423 TGCAAGTTATATCACACCAGATTG 57.318 37.500 0.00 0.00 0.00 2.67
201 204 6.223120 AGCAATGATATAGTAACGACATGCA 58.777 36.000 0.00 0.00 0.00 3.96
224 232 4.683832 AGTTAAGAGCGCCAAGTACATAG 58.316 43.478 2.29 0.00 0.00 2.23
262 275 6.285990 TGTATGAGCATCTACGTCTGTACTA 58.714 40.000 0.00 0.00 34.92 1.82
277 290 8.177119 TGAGTGTATGTATGTATGTATGAGCA 57.823 34.615 0.00 0.00 0.00 4.26
290 303 8.364894 TGCGTTTATAAGGATGAGTGTATGTAT 58.635 33.333 0.00 0.00 0.00 2.29
291 304 7.650504 GTGCGTTTATAAGGATGAGTGTATGTA 59.349 37.037 0.00 0.00 0.00 2.29
320 333 0.986550 ATAGGGTAGGGGGTGTGTGC 60.987 60.000 0.00 0.00 0.00 4.57
324 337 0.400093 GCTCATAGGGTAGGGGGTGT 60.400 60.000 0.00 0.00 0.00 4.16
326 339 0.400093 GTGCTCATAGGGTAGGGGGT 60.400 60.000 0.00 0.00 0.00 4.95
328 341 0.104934 AGGTGCTCATAGGGTAGGGG 60.105 60.000 0.00 0.00 0.00 4.79
329 342 1.343069 GAGGTGCTCATAGGGTAGGG 58.657 60.000 0.00 0.00 0.00 3.53
331 344 0.962489 CGGAGGTGCTCATAGGGTAG 59.038 60.000 0.00 0.00 31.08 3.18
332 345 3.127099 CGGAGGTGCTCATAGGGTA 57.873 57.895 0.00 0.00 31.08 3.69
333 346 3.956377 CGGAGGTGCTCATAGGGT 58.044 61.111 0.00 0.00 31.08 4.34
351 364 1.002430 TGATGTGTTGGCTCAGTCTCC 59.998 52.381 0.00 0.00 0.00 3.71
363 376 6.558771 TCGTCAATTTCAAGATGATGTGTT 57.441 33.333 0.00 0.00 33.02 3.32
373 386 3.730715 GTGGCAAGTTCGTCAATTTCAAG 59.269 43.478 0.00 0.00 0.00 3.02
378 391 2.290641 GTCTGTGGCAAGTTCGTCAATT 59.709 45.455 0.00 0.00 0.00 2.32
390 403 2.037251 GACTAAGAAGGTGTCTGTGGCA 59.963 50.000 0.00 0.00 36.40 4.92
406 419 3.604875 GGAGACGTTCCCATTGACTAA 57.395 47.619 0.00 0.00 40.37 2.24
427 440 0.792640 GTGATGTGCGTTCAGTGGAG 59.207 55.000 0.00 0.00 0.00 3.86
428 441 0.602638 GGTGATGTGCGTTCAGTGGA 60.603 55.000 0.00 0.00 0.00 4.02
493 506 3.369471 CCCACACGGTTCAAGTCATAGAT 60.369 47.826 0.00 0.00 0.00 1.98
509 522 0.250553 TCGATGGAACCAACCCACAC 60.251 55.000 0.00 0.00 36.36 3.82
525 538 5.014858 ACTCAGATGGTTAGGTTACTTCGA 58.985 41.667 0.00 0.00 0.00 3.71
594 608 7.257722 CCTGCTCTAGTCTCTCTTTTTCTAAG 58.742 42.308 0.00 0.00 0.00 2.18
648 886 8.055279 TCTCATTTGCTTTAGAAAACCATAGG 57.945 34.615 0.00 0.00 0.00 2.57
664 902 7.144000 GGATTAAGGTCATGAATCTCATTTGC 58.856 38.462 0.00 0.00 34.28 3.68
752 1004 8.754096 GCAAACGAATGCAATCATATTATTTCA 58.246 29.630 11.34 0.00 45.70 2.69
827 1256 0.318445 ACGCGCGGACTATGGATTAC 60.318 55.000 35.22 0.00 0.00 1.89
922 1351 2.011947 AGAGCTGCATGTACGTACGTA 58.988 47.619 23.60 23.60 0.00 3.57
924 1353 1.467875 GAGAGCTGCATGTACGTACG 58.532 55.000 20.18 15.01 0.00 3.67
925 1354 1.202154 ACGAGAGCTGCATGTACGTAC 60.202 52.381 18.90 18.90 0.00 3.67
990 1421 1.069596 CATGGCCATGGTCGATCGA 59.930 57.895 34.31 15.15 35.24 3.59
1049 1480 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1050 1481 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1051 1482 0.478507 GAGAGGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
1052 1483 0.996762 GGAGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1053 1484 1.292941 TGGAGAGGAGGAGGAGGAGG 61.293 65.000 0.00 0.00 0.00 4.30
1054 1485 0.185901 CTGGAGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
1097 1528 3.423154 CGTCCTTGGCGGAGTTGC 61.423 66.667 0.00 0.00 44.20 4.17
1106 1537 3.551496 TTGGAGCAGGCGTCCTTGG 62.551 63.158 9.91 0.00 34.86 3.61
1161 1592 2.447379 ATGCTCTCCGGGATGCCT 60.447 61.111 16.19 6.85 0.00 4.75
1281 1712 2.825836 CACTGCGGGCCCTTGATC 60.826 66.667 22.43 4.02 0.00 2.92
1386 1817 1.568025 GTTGAACTTGGCGTCGTCC 59.432 57.895 0.00 0.00 0.00 4.79
1509 1940 1.497991 TCTCGAACTCGTTGCCTTTG 58.502 50.000 0.00 0.00 40.80 2.77
1634 2065 3.345808 CAACACGTGCGAGTGGGG 61.346 66.667 17.22 3.90 45.80 4.96
1653 2084 5.234757 TGTGTCGACAACAAAGTATGTTACC 59.765 40.000 21.95 2.13 45.86 2.85
1659 2090 4.945246 ACTCTGTGTCGACAACAAAGTAT 58.055 39.130 21.95 5.93 42.94 2.12
1662 2093 4.317139 CGTTACTCTGTGTCGACAACAAAG 60.317 45.833 21.95 17.80 43.66 2.77
1666 2097 2.466571 CACGTTACTCTGTGTCGACAAC 59.533 50.000 21.95 14.83 0.00 3.32
1669 2100 1.050767 GCACGTTACTCTGTGTCGAC 58.949 55.000 9.11 9.11 38.36 4.20
1687 2118 9.500864 GATCAGAATAAAAGAACATCAAGAAGC 57.499 33.333 0.00 0.00 0.00 3.86
1705 2136 4.559862 AGAAAACCTGGTCGATCAGAAT 57.440 40.909 27.29 11.80 36.93 2.40
1730 2161 9.703892 AAAGAAGCACTATGAACATATAGCTAG 57.296 33.333 15.84 0.00 34.41 3.42
1848 2286 8.683615 AGAGATCCCACGGAAAATAAAATTTAC 58.316 33.333 0.00 0.00 34.34 2.01
1918 2357 7.884257 TCATGTGTTCTTTGATATTTTCAGCA 58.116 30.769 0.00 0.00 35.27 4.41
1921 2360 9.474920 GGTTTCATGTGTTCTTTGATATTTTCA 57.525 29.630 0.00 0.00 0.00 2.69
1995 2439 8.749354 GGAAGGTAAATGGATGAAAATAGTTGT 58.251 33.333 0.00 0.00 0.00 3.32
1998 2442 8.893563 TTGGAAGGTAAATGGATGAAAATAGT 57.106 30.769 0.00 0.00 0.00 2.12
2059 2513 4.385825 TGTTCCTAAAGCGTGAACTCATT 58.614 39.130 0.00 0.00 39.24 2.57
2073 2527 5.418840 GCCCAGAAATCAGAAATGTTCCTAA 59.581 40.000 0.00 0.00 0.00 2.69
2263 2717 5.013599 AGCTAATCTCCAGACAAAGACCTTT 59.986 40.000 0.00 0.00 0.00 3.11
2281 2741 2.040278 TGGCAAGGAGTGTTGAGCTAAT 59.960 45.455 0.00 0.00 0.00 1.73
2289 2749 1.157870 CGTCGTTGGCAAGGAGTGTT 61.158 55.000 21.74 0.00 0.00 3.32
2362 2822 1.421410 GGCGCCACGAATCTACACAG 61.421 60.000 24.80 0.00 0.00 3.66
2368 2828 3.204827 GCATGGCGCCACGAATCT 61.205 61.111 35.50 12.76 32.94 2.40
2439 2899 9.639601 CAGTGTTCACTGTCATTTTAGATACTA 57.360 33.333 20.65 0.00 33.32 1.82
2515 2975 1.247567 CCATCCGTGCAAACTCCTTT 58.752 50.000 0.00 0.00 0.00 3.11
2557 3017 5.588240 TGTATTGTCTTTCGTCTCGCATAT 58.412 37.500 0.00 0.00 0.00 1.78
2566 3026 5.940192 TTGCTTCATGTATTGTCTTTCGT 57.060 34.783 0.00 0.00 0.00 3.85
2573 3033 8.362639 ACTTTGAAAGATTGCTTCATGTATTGT 58.637 29.630 12.53 0.00 31.82 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.