Multiple sequence alignment - TraesCS4A01G365300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G365300 chr4A 100.000 2166 0 0 387 2552 638801930 638804095 0.000000e+00 4000
1 TraesCS4A01G365300 chr4A 100.000 87 0 0 1 87 638801544 638801630 7.310000e-36 161
2 TraesCS4A01G365300 chr5D 93.023 1161 55 9 552 1703 533165660 533164517 0.000000e+00 1672
3 TraesCS4A01G365300 chr5D 90.794 630 50 2 1784 2413 533164301 533163680 0.000000e+00 835
4 TraesCS4A01G365300 chr5D 92.920 113 7 1 432 543 533197312 533197200 2.030000e-36 163
5 TraesCS4A01G365300 chr5B 94.354 1045 29 10 676 1703 673106757 673105726 0.000000e+00 1576
6 TraesCS4A01G365300 chr5B 92.035 339 25 2 1784 2121 673105480 673105143 2.300000e-130 475
7 TraesCS4A01G365300 chr5B 83.135 504 56 13 1146 1630 673102919 673102426 1.400000e-117 433
8 TraesCS4A01G365300 chr5B 93.296 179 12 0 2116 2294 673104931 673104753 5.410000e-67 265
9 TraesCS4A01G365300 chr5B 88.571 105 11 1 1642 1746 673100751 673100648 2.670000e-25 126
10 TraesCS4A01G365300 chr5A 82.639 144 21 3 402 543 680213709 680213568 9.590000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G365300 chr4A 638801544 638804095 2551 False 2080.5 4000 100.0000 1 2552 2 chr4A.!!$F1 2551
1 TraesCS4A01G365300 chr5D 533163680 533165660 1980 True 1253.5 1672 91.9085 552 2413 2 chr5D.!!$R2 1861
2 TraesCS4A01G365300 chr5B 673100648 673106757 6109 True 575.0 1576 90.2782 676 2294 5 chr5B.!!$R1 1618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 999 0.031585 TCGACGGGACAAGACAACAG 59.968 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2656 0.45339 GCCAGAAGGAAGGAATTGCG 59.547 55.0 0.0 0.0 36.89 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.454921 TCATGGCATGTCACGAACG 58.545 52.632 25.62 0.00 0.00 3.95
19 20 0.037790 TCATGGCATGTCACGAACGA 60.038 50.000 25.62 1.45 0.00 3.85
20 21 0.371301 CATGGCATGTCACGAACGAG 59.629 55.000 19.32 0.00 0.00 4.18
21 22 0.246360 ATGGCATGTCACGAACGAGA 59.754 50.000 0.00 0.00 0.00 4.04
22 23 0.246360 TGGCATGTCACGAACGAGAT 59.754 50.000 0.00 0.00 0.00 2.75
23 24 1.337728 TGGCATGTCACGAACGAGATT 60.338 47.619 0.00 0.00 0.00 2.40
24 25 2.094442 TGGCATGTCACGAACGAGATTA 60.094 45.455 0.00 0.00 0.00 1.75
25 26 2.281762 GGCATGTCACGAACGAGATTAC 59.718 50.000 0.14 0.00 0.00 1.89
26 27 2.921121 GCATGTCACGAACGAGATTACA 59.079 45.455 0.14 0.00 0.00 2.41
27 28 3.241678 GCATGTCACGAACGAGATTACAC 60.242 47.826 0.14 0.00 0.00 2.90
28 29 3.629438 TGTCACGAACGAGATTACACA 57.371 42.857 0.14 0.00 0.00 3.72
29 30 3.967401 TGTCACGAACGAGATTACACAA 58.033 40.909 0.14 0.00 0.00 3.33
30 31 3.978855 TGTCACGAACGAGATTACACAAG 59.021 43.478 0.14 0.00 0.00 3.16
31 32 4.224433 GTCACGAACGAGATTACACAAGA 58.776 43.478 0.14 0.00 0.00 3.02
32 33 4.857588 GTCACGAACGAGATTACACAAGAT 59.142 41.667 0.14 0.00 0.00 2.40
33 34 6.025896 GTCACGAACGAGATTACACAAGATA 58.974 40.000 0.14 0.00 0.00 1.98
34 35 6.525628 GTCACGAACGAGATTACACAAGATAA 59.474 38.462 0.14 0.00 0.00 1.75
35 36 6.745907 TCACGAACGAGATTACACAAGATAAG 59.254 38.462 0.14 0.00 0.00 1.73
36 37 6.020599 CACGAACGAGATTACACAAGATAAGG 60.021 42.308 0.14 0.00 0.00 2.69
37 38 6.127814 ACGAACGAGATTACACAAGATAAGGA 60.128 38.462 0.14 0.00 0.00 3.36
38 39 6.750501 CGAACGAGATTACACAAGATAAGGAA 59.249 38.462 0.00 0.00 0.00 3.36
39 40 7.043986 CGAACGAGATTACACAAGATAAGGAAG 60.044 40.741 0.00 0.00 0.00 3.46
40 41 6.043411 ACGAGATTACACAAGATAAGGAAGC 58.957 40.000 0.00 0.00 0.00 3.86
41 42 5.463724 CGAGATTACACAAGATAAGGAAGCC 59.536 44.000 0.00 0.00 0.00 4.35
42 43 5.685728 AGATTACACAAGATAAGGAAGCCC 58.314 41.667 0.00 0.00 0.00 5.19
43 44 2.808906 ACACAAGATAAGGAAGCCCC 57.191 50.000 0.00 0.00 0.00 5.80
44 45 1.285078 ACACAAGATAAGGAAGCCCCC 59.715 52.381 0.00 0.00 34.66 5.40
45 46 1.284785 CACAAGATAAGGAAGCCCCCA 59.715 52.381 0.00 0.00 34.66 4.96
46 47 1.285078 ACAAGATAAGGAAGCCCCCAC 59.715 52.381 0.00 0.00 34.66 4.61
47 48 0.927029 AAGATAAGGAAGCCCCCACC 59.073 55.000 0.00 0.00 34.66 4.61
48 49 0.994050 AGATAAGGAAGCCCCCACCC 60.994 60.000 0.00 0.00 34.66 4.61
49 50 2.008006 GATAAGGAAGCCCCCACCCC 62.008 65.000 0.00 0.00 34.66 4.95
60 61 3.391382 CCACCCCCGACTGAGGTC 61.391 72.222 0.00 0.00 38.97 3.85
61 62 2.283966 CACCCCCGACTGAGGTCT 60.284 66.667 0.00 0.00 40.10 3.85
62 63 2.037527 ACCCCCGACTGAGGTCTC 59.962 66.667 0.00 0.00 40.10 3.36
63 64 2.037367 CCCCCGACTGAGGTCTCA 59.963 66.667 0.45 0.45 40.10 3.27
64 65 2.352032 CCCCCGACTGAGGTCTCAC 61.352 68.421 0.00 0.00 40.10 3.51
65 66 1.606601 CCCCGACTGAGGTCTCACA 60.607 63.158 0.00 0.00 40.10 3.58
66 67 1.587054 CCCGACTGAGGTCTCACAC 59.413 63.158 0.00 0.00 40.10 3.82
75 76 3.347411 GGTCTCACACCGCTACATC 57.653 57.895 0.00 0.00 34.56 3.06
76 77 0.530744 GGTCTCACACCGCTACATCA 59.469 55.000 0.00 0.00 34.56 3.07
77 78 1.630148 GTCTCACACCGCTACATCAC 58.370 55.000 0.00 0.00 0.00 3.06
78 79 0.170339 TCTCACACCGCTACATCACG 59.830 55.000 0.00 0.00 0.00 4.35
79 80 0.109272 CTCACACCGCTACATCACGT 60.109 55.000 0.00 0.00 0.00 4.49
80 81 0.109458 TCACACCGCTACATCACGTC 60.109 55.000 0.00 0.00 0.00 4.34
81 82 1.154093 ACACCGCTACATCACGTCG 60.154 57.895 0.00 0.00 0.00 5.12
82 83 2.202570 ACCGCTACATCACGTCGC 60.203 61.111 0.00 0.00 33.05 5.19
83 84 2.102357 CCGCTACATCACGTCGCT 59.898 61.111 0.00 0.00 34.21 4.93
84 85 1.939785 CCGCTACATCACGTCGCTC 60.940 63.158 0.00 0.00 34.21 5.03
85 86 1.226295 CGCTACATCACGTCGCTCA 60.226 57.895 0.00 0.00 34.21 4.26
86 87 0.592500 CGCTACATCACGTCGCTCAT 60.593 55.000 0.00 0.00 34.21 2.90
409 410 6.481954 AAAACTGTATTCACTCGGAATGTC 57.518 37.500 0.00 0.00 45.70 3.06
410 411 5.407407 AACTGTATTCACTCGGAATGTCT 57.593 39.130 0.00 0.00 45.70 3.41
411 412 5.407407 ACTGTATTCACTCGGAATGTCTT 57.593 39.130 0.00 0.00 45.70 3.01
412 413 5.794894 ACTGTATTCACTCGGAATGTCTTT 58.205 37.500 0.00 0.00 45.70 2.52
413 414 5.639506 ACTGTATTCACTCGGAATGTCTTTG 59.360 40.000 0.00 0.00 45.70 2.77
414 415 4.391830 TGTATTCACTCGGAATGTCTTTGC 59.608 41.667 0.00 0.00 45.70 3.68
415 416 2.542020 TCACTCGGAATGTCTTTGCA 57.458 45.000 0.00 0.00 0.00 4.08
416 417 2.143122 TCACTCGGAATGTCTTTGCAC 58.857 47.619 0.00 0.00 0.00 4.57
417 418 1.872952 CACTCGGAATGTCTTTGCACA 59.127 47.619 0.00 0.00 0.00 4.57
418 419 2.485426 CACTCGGAATGTCTTTGCACAT 59.515 45.455 0.00 0.00 38.74 3.21
419 420 2.485426 ACTCGGAATGTCTTTGCACATG 59.515 45.455 0.00 0.00 37.07 3.21
420 421 2.743664 CTCGGAATGTCTTTGCACATGA 59.256 45.455 0.00 0.00 37.07 3.07
421 422 2.483877 TCGGAATGTCTTTGCACATGAC 59.516 45.455 0.00 6.11 37.07 3.06
422 423 2.414559 CGGAATGTCTTTGCACATGACC 60.415 50.000 0.00 6.15 37.07 4.02
423 424 2.821969 GGAATGTCTTTGCACATGACCT 59.178 45.455 0.00 0.00 37.07 3.85
424 425 3.256631 GGAATGTCTTTGCACATGACCTT 59.743 43.478 0.00 6.75 37.07 3.50
425 426 4.262164 GGAATGTCTTTGCACATGACCTTT 60.262 41.667 0.00 4.91 37.07 3.11
426 427 4.942761 ATGTCTTTGCACATGACCTTTT 57.057 36.364 0.00 0.00 35.57 2.27
427 428 6.403866 AATGTCTTTGCACATGACCTTTTA 57.596 33.333 0.00 0.00 37.07 1.52
428 429 5.437289 TGTCTTTGCACATGACCTTTTAG 57.563 39.130 0.00 0.00 0.00 1.85
429 430 4.278170 TGTCTTTGCACATGACCTTTTAGG 59.722 41.667 0.00 0.00 42.49 2.69
430 431 7.421263 ATGTCTTTGCACATGACCTTTTAGGT 61.421 38.462 0.00 0.00 39.43 3.08
438 439 4.926207 CCTTTTAGGTCCGACCCG 57.074 61.111 14.32 0.00 39.75 5.28
439 440 1.449070 CCTTTTAGGTCCGACCCGC 60.449 63.158 14.32 0.00 39.75 6.13
440 441 1.294138 CTTTTAGGTCCGACCCGCA 59.706 57.895 14.32 0.00 39.75 5.69
441 442 1.004679 TTTTAGGTCCGACCCGCAC 60.005 57.895 14.32 0.00 39.75 5.34
442 443 1.756408 TTTTAGGTCCGACCCGCACA 61.756 55.000 14.32 0.00 39.75 4.57
443 444 2.438951 TTTAGGTCCGACCCGCACAC 62.439 60.000 14.32 0.00 39.75 3.82
445 446 4.612412 GGTCCGACCCGCACACAA 62.612 66.667 6.25 0.00 30.04 3.33
446 447 3.343421 GTCCGACCCGCACACAAC 61.343 66.667 0.00 0.00 0.00 3.32
447 448 3.851128 TCCGACCCGCACACAACA 61.851 61.111 0.00 0.00 0.00 3.33
448 449 3.645975 CCGACCCGCACACAACAC 61.646 66.667 0.00 0.00 0.00 3.32
449 450 3.645975 CGACCCGCACACAACACC 61.646 66.667 0.00 0.00 0.00 4.16
450 451 3.645975 GACCCGCACACAACACCG 61.646 66.667 0.00 0.00 0.00 4.94
451 452 4.476752 ACCCGCACACAACACCGT 62.477 61.111 0.00 0.00 0.00 4.83
452 453 3.947841 CCCGCACACAACACCGTG 61.948 66.667 0.00 0.00 42.81 4.94
453 454 2.892914 CCGCACACAACACCGTGA 60.893 61.111 5.28 0.00 39.34 4.35
454 455 2.250939 CCGCACACAACACCGTGAT 61.251 57.895 5.28 0.00 39.34 3.06
455 456 1.204062 CGCACACAACACCGTGATC 59.796 57.895 5.28 0.00 39.34 2.92
456 457 1.574428 GCACACAACACCGTGATCC 59.426 57.895 5.28 0.00 39.34 3.36
457 458 1.852067 GCACACAACACCGTGATCCC 61.852 60.000 5.28 0.00 39.34 3.85
458 459 1.301401 ACACAACACCGTGATCCCG 60.301 57.895 5.28 0.00 39.34 5.14
459 460 2.358247 ACAACACCGTGATCCCGC 60.358 61.111 5.28 0.00 0.00 6.13
460 461 3.487202 CAACACCGTGATCCCGCG 61.487 66.667 5.28 0.00 45.12 6.46
461 462 3.998672 AACACCGTGATCCCGCGT 61.999 61.111 4.92 0.00 44.14 6.01
462 463 3.927163 AACACCGTGATCCCGCGTC 62.927 63.158 4.92 0.00 44.14 5.19
463 464 4.129737 CACCGTGATCCCGCGTCT 62.130 66.667 4.92 0.00 44.14 4.18
464 465 3.823330 ACCGTGATCCCGCGTCTC 61.823 66.667 4.92 0.00 44.14 3.36
465 466 3.822192 CCGTGATCCCGCGTCTCA 61.822 66.667 4.92 1.45 44.14 3.27
466 467 2.413351 CGTGATCCCGCGTCTCAT 59.587 61.111 4.92 0.00 41.03 2.90
467 468 1.226974 CGTGATCCCGCGTCTCATT 60.227 57.895 4.92 0.00 41.03 2.57
468 469 0.806102 CGTGATCCCGCGTCTCATTT 60.806 55.000 4.92 0.00 41.03 2.32
469 470 0.931005 GTGATCCCGCGTCTCATTTC 59.069 55.000 4.92 0.00 0.00 2.17
470 471 0.534873 TGATCCCGCGTCTCATTTCA 59.465 50.000 4.92 0.00 0.00 2.69
471 472 1.066502 TGATCCCGCGTCTCATTTCAA 60.067 47.619 4.92 0.00 0.00 2.69
472 473 1.594862 GATCCCGCGTCTCATTTCAAG 59.405 52.381 4.92 0.00 0.00 3.02
473 474 0.320374 TCCCGCGTCTCATTTCAAGT 59.680 50.000 4.92 0.00 0.00 3.16
474 475 1.546923 TCCCGCGTCTCATTTCAAGTA 59.453 47.619 4.92 0.00 0.00 2.24
475 476 1.927174 CCCGCGTCTCATTTCAAGTAG 59.073 52.381 4.92 0.00 0.00 2.57
476 477 2.607187 CCGCGTCTCATTTCAAGTAGT 58.393 47.619 4.92 0.00 0.00 2.73
477 478 3.428452 CCCGCGTCTCATTTCAAGTAGTA 60.428 47.826 4.92 0.00 0.00 1.82
478 479 3.546670 CCGCGTCTCATTTCAAGTAGTAC 59.453 47.826 4.92 0.00 0.00 2.73
479 480 4.413087 CGCGTCTCATTTCAAGTAGTACT 58.587 43.478 0.00 0.00 0.00 2.73
480 481 4.857588 CGCGTCTCATTTCAAGTAGTACTT 59.142 41.667 9.85 9.85 39.39 2.24
481 482 5.345202 CGCGTCTCATTTCAAGTAGTACTTT 59.655 40.000 13.00 0.00 36.03 2.66
482 483 6.526222 GCGTCTCATTTCAAGTAGTACTTTG 58.474 40.000 13.00 9.14 36.03 2.77
483 484 6.365247 GCGTCTCATTTCAAGTAGTACTTTGA 59.635 38.462 13.00 12.65 36.03 2.69
484 485 7.063544 GCGTCTCATTTCAAGTAGTACTTTGAT 59.936 37.037 13.00 5.03 36.03 2.57
485 486 8.587950 CGTCTCATTTCAAGTAGTACTTTGATC 58.412 37.037 13.00 9.23 36.03 2.92
486 487 8.874816 GTCTCATTTCAAGTAGTACTTTGATCC 58.125 37.037 13.00 4.80 36.03 3.36
487 488 8.593679 TCTCATTTCAAGTAGTACTTTGATCCA 58.406 33.333 13.00 0.33 36.03 3.41
488 489 8.547967 TCATTTCAAGTAGTACTTTGATCCAC 57.452 34.615 13.00 0.00 36.03 4.02
489 490 7.330946 TCATTTCAAGTAGTACTTTGATCCACG 59.669 37.037 13.00 0.06 36.03 4.94
490 491 5.068234 TCAAGTAGTACTTTGATCCACGG 57.932 43.478 13.00 0.00 36.03 4.94
491 492 4.525487 TCAAGTAGTACTTTGATCCACGGT 59.475 41.667 13.00 0.00 36.03 4.83
492 493 4.451629 AGTAGTACTTTGATCCACGGTG 57.548 45.455 0.00 0.00 0.00 4.94
493 494 2.762535 AGTACTTTGATCCACGGTGG 57.237 50.000 21.27 21.27 39.43 4.61
494 495 1.975680 AGTACTTTGATCCACGGTGGT 59.024 47.619 25.53 13.73 39.03 4.16
495 496 2.370849 AGTACTTTGATCCACGGTGGTT 59.629 45.455 25.53 18.28 39.03 3.67
496 497 3.579586 AGTACTTTGATCCACGGTGGTTA 59.420 43.478 25.53 9.05 39.03 2.85
497 498 3.495434 ACTTTGATCCACGGTGGTTAA 57.505 42.857 25.53 15.96 39.03 2.01
498 499 3.143728 ACTTTGATCCACGGTGGTTAAC 58.856 45.455 25.53 15.32 39.03 2.01
499 500 3.181448 ACTTTGATCCACGGTGGTTAACT 60.181 43.478 25.53 7.69 39.03 2.24
500 501 4.040706 ACTTTGATCCACGGTGGTTAACTA 59.959 41.667 25.53 6.75 39.03 2.24
501 502 3.880047 TGATCCACGGTGGTTAACTAG 57.120 47.619 25.53 0.00 39.03 2.57
502 503 2.093869 TGATCCACGGTGGTTAACTAGC 60.094 50.000 25.53 10.80 39.03 3.42
506 507 2.645411 CGGTGGTTAACTAGCGTCG 58.355 57.895 28.51 11.14 42.11 5.12
507 508 0.799534 CGGTGGTTAACTAGCGTCGG 60.800 60.000 28.51 7.27 42.11 4.79
508 509 1.080435 GGTGGTTAACTAGCGTCGGC 61.080 60.000 5.37 0.00 40.37 5.54
509 510 1.080435 GTGGTTAACTAGCGTCGGCC 61.080 60.000 5.42 0.00 41.24 6.13
510 511 1.216178 GGTTAACTAGCGTCGGCCA 59.784 57.895 2.24 0.00 41.24 5.36
511 512 0.390209 GGTTAACTAGCGTCGGCCAA 60.390 55.000 2.24 0.00 41.24 4.52
512 513 0.997196 GTTAACTAGCGTCGGCCAAG 59.003 55.000 2.24 0.00 41.24 3.61
513 514 0.604578 TTAACTAGCGTCGGCCAAGT 59.395 50.000 2.24 0.00 41.24 3.16
514 515 1.462616 TAACTAGCGTCGGCCAAGTA 58.537 50.000 2.24 0.00 41.24 2.24
515 516 0.822164 AACTAGCGTCGGCCAAGTAT 59.178 50.000 2.24 0.00 41.24 2.12
516 517 0.384669 ACTAGCGTCGGCCAAGTATC 59.615 55.000 2.24 0.00 41.24 2.24
517 518 0.660595 CTAGCGTCGGCCAAGTATCG 60.661 60.000 2.24 0.00 41.24 2.92
518 519 1.378882 TAGCGTCGGCCAAGTATCGT 61.379 55.000 2.24 0.00 41.24 3.73
519 520 2.514013 GCGTCGGCCAAGTATCGTG 61.514 63.158 2.24 0.00 0.00 4.35
520 521 1.138036 CGTCGGCCAAGTATCGTGA 59.862 57.895 2.24 0.00 0.00 4.35
521 522 0.457166 CGTCGGCCAAGTATCGTGAA 60.457 55.000 2.24 0.00 0.00 3.18
522 523 1.717194 GTCGGCCAAGTATCGTGAAA 58.283 50.000 2.24 0.00 0.00 2.69
523 524 1.659098 GTCGGCCAAGTATCGTGAAAG 59.341 52.381 2.24 0.00 0.00 2.62
524 525 1.546923 TCGGCCAAGTATCGTGAAAGA 59.453 47.619 2.24 0.00 0.00 2.52
525 526 2.028839 TCGGCCAAGTATCGTGAAAGAA 60.029 45.455 2.24 0.00 0.00 2.52
526 527 2.936498 CGGCCAAGTATCGTGAAAGAAT 59.064 45.455 2.24 0.00 0.00 2.40
527 528 3.001330 CGGCCAAGTATCGTGAAAGAATC 59.999 47.826 2.24 0.00 0.00 2.52
528 529 3.938963 GGCCAAGTATCGTGAAAGAATCA 59.061 43.478 0.00 0.00 35.05 2.57
529 530 4.576463 GGCCAAGTATCGTGAAAGAATCAT 59.424 41.667 0.00 0.00 40.97 2.45
530 531 5.277538 GGCCAAGTATCGTGAAAGAATCATC 60.278 44.000 0.00 0.00 40.97 2.92
531 532 5.557136 GCCAAGTATCGTGAAAGAATCATCG 60.557 44.000 0.00 0.00 40.97 3.84
532 533 5.050769 CCAAGTATCGTGAAAGAATCATCGG 60.051 44.000 0.00 0.00 40.97 4.18
533 534 5.263968 AGTATCGTGAAAGAATCATCGGT 57.736 39.130 0.00 0.00 40.97 4.69
534 535 5.282510 AGTATCGTGAAAGAATCATCGGTC 58.717 41.667 0.00 0.00 40.97 4.79
535 536 2.526077 TCGTGAAAGAATCATCGGTCG 58.474 47.619 0.00 0.00 40.97 4.79
536 537 1.005975 CGTGAAAGAATCATCGGTCGC 60.006 52.381 0.00 0.00 40.97 5.19
537 538 1.327764 GTGAAAGAATCATCGGTCGCC 59.672 52.381 0.00 0.00 40.97 5.54
538 539 1.207089 TGAAAGAATCATCGGTCGCCT 59.793 47.619 0.00 0.00 31.50 5.52
539 540 2.429250 TGAAAGAATCATCGGTCGCCTA 59.571 45.455 0.00 0.00 31.50 3.93
540 541 2.802787 AAGAATCATCGGTCGCCTAG 57.197 50.000 0.00 0.00 0.00 3.02
541 542 0.315568 AGAATCATCGGTCGCCTAGC 59.684 55.000 0.00 0.00 0.00 3.42
542 543 0.032130 GAATCATCGGTCGCCTAGCA 59.968 55.000 0.00 0.00 0.00 3.49
543 544 0.464036 AATCATCGGTCGCCTAGCAA 59.536 50.000 0.00 0.00 0.00 3.91
544 545 0.032678 ATCATCGGTCGCCTAGCAAG 59.967 55.000 0.00 0.00 0.00 4.01
545 546 1.592669 CATCGGTCGCCTAGCAAGG 60.593 63.158 0.00 0.00 46.76 3.61
550 551 4.434483 TCGCCTAGCAAGGAGACA 57.566 55.556 0.00 0.00 45.68 3.41
571 572 3.276857 ACATCAGTGAGCCTTAATGCTG 58.723 45.455 10.18 0.00 42.95 4.41
597 598 2.820787 TGGGCATAAAAACCGACGAATT 59.179 40.909 0.00 0.00 0.00 2.17
605 606 2.188062 AACCGACGAATTAAAGGCCA 57.812 45.000 5.01 0.00 0.00 5.36
633 634 5.334105 CGACATCGAACCTGAAAAGAACAAT 60.334 40.000 0.00 0.00 43.02 2.71
679 680 2.219674 CGATTTTCATCTCTGCTACGGC 59.780 50.000 0.00 0.00 39.26 5.68
681 682 0.901827 TTTCATCTCTGCTACGGCCA 59.098 50.000 2.24 0.00 37.74 5.36
718 723 5.656213 TGGTTAACCAAAAAGAAACGGAA 57.344 34.783 25.19 0.00 44.35 4.30
810 819 4.687948 GTCCAGTGTGTGCTATATATGCAG 59.312 45.833 9.27 0.00 41.41 4.41
822 831 7.341030 TGCTATATATGCAGCAGATTATTGGT 58.659 34.615 8.06 0.00 42.68 3.67
908 917 2.013058 GCTTCTCTCCTCTCCGTACGT 61.013 57.143 15.21 0.00 0.00 3.57
952 963 2.860735 GCCTCACGCTCTATAACAACAG 59.139 50.000 0.00 0.00 0.00 3.16
981 995 1.182667 ATGATCGACGGGACAAGACA 58.817 50.000 0.00 0.00 0.00 3.41
982 996 0.963225 TGATCGACGGGACAAGACAA 59.037 50.000 0.00 0.00 0.00 3.18
983 997 1.336517 TGATCGACGGGACAAGACAAC 60.337 52.381 0.00 0.00 0.00 3.32
984 998 0.677288 ATCGACGGGACAAGACAACA 59.323 50.000 0.00 0.00 0.00 3.33
985 999 0.031585 TCGACGGGACAAGACAACAG 59.968 55.000 0.00 0.00 0.00 3.16
1033 1047 2.037367 CCCGTCACCTCCTCCTCA 59.963 66.667 0.00 0.00 0.00 3.86
1435 1449 3.545481 GCGAGACGTGCATGGACG 61.545 66.667 34.09 34.09 45.09 4.79
1436 1450 2.880879 CGAGACGTGCATGGACGG 60.881 66.667 37.21 22.24 43.84 4.79
1594 1611 7.766219 TTACCTTAATTTATCTCTCACGTGC 57.234 36.000 11.67 0.00 0.00 5.34
1638 1660 9.539825 TGCACTGTTGAATTTGTATTTTGTAAT 57.460 25.926 0.00 0.00 0.00 1.89
1693 1718 3.244630 ACATTGGCTTTCCGGTTACAGTA 60.245 43.478 0.00 0.00 34.14 2.74
1703 1728 6.988622 TTCCGGTTACAGTACATAAATTGG 57.011 37.500 0.00 0.00 0.00 3.16
1733 1948 5.103982 TCCAATCATTCCTGCTAGGATGAAA 60.104 40.000 6.09 0.00 45.34 2.69
1734 1949 5.009410 CCAATCATTCCTGCTAGGATGAAAC 59.991 44.000 6.09 0.00 45.34 2.78
1735 1950 4.842531 TCATTCCTGCTAGGATGAAACA 57.157 40.909 6.09 0.00 45.34 2.83
1739 1954 2.439507 TCCTGCTAGGATGAAACATCCC 59.560 50.000 22.14 11.23 40.06 3.85
1741 1956 1.494721 TGCTAGGATGAAACATCCCCC 59.505 52.381 22.14 13.53 38.98 5.40
1742 1957 1.494721 GCTAGGATGAAACATCCCCCA 59.505 52.381 22.14 10.61 38.98 4.96
1743 1958 2.108952 GCTAGGATGAAACATCCCCCAT 59.891 50.000 22.14 10.18 38.98 4.00
1744 1959 3.330701 GCTAGGATGAAACATCCCCCATA 59.669 47.826 22.14 10.66 38.98 2.74
1745 1960 4.566488 GCTAGGATGAAACATCCCCCATAG 60.566 50.000 22.14 17.98 38.98 2.23
1746 1961 2.108952 AGGATGAAACATCCCCCATAGC 59.891 50.000 22.14 1.13 38.98 2.97
1747 1962 2.108952 GGATGAAACATCCCCCATAGCT 59.891 50.000 17.03 0.00 32.09 3.32
1748 1963 3.330701 GGATGAAACATCCCCCATAGCTA 59.669 47.826 17.03 0.00 32.09 3.32
1749 1964 4.566488 GGATGAAACATCCCCCATAGCTAG 60.566 50.000 17.03 0.00 32.09 3.42
1750 1965 3.664320 TGAAACATCCCCCATAGCTAGA 58.336 45.455 0.00 0.00 0.00 2.43
1751 1966 4.044308 TGAAACATCCCCCATAGCTAGAA 58.956 43.478 0.00 0.00 0.00 2.10
1752 1967 4.665009 TGAAACATCCCCCATAGCTAGAAT 59.335 41.667 0.00 0.00 0.00 2.40
1753 1968 5.134339 TGAAACATCCCCCATAGCTAGAATT 59.866 40.000 0.00 0.00 0.00 2.17
1754 1969 5.669798 AACATCCCCCATAGCTAGAATTT 57.330 39.130 0.00 0.00 0.00 1.82
1755 1970 4.990526 ACATCCCCCATAGCTAGAATTTG 58.009 43.478 0.00 0.00 0.00 2.32
1756 1971 4.416848 ACATCCCCCATAGCTAGAATTTGT 59.583 41.667 0.00 0.00 0.00 2.83
1757 1972 5.610982 ACATCCCCCATAGCTAGAATTTGTA 59.389 40.000 0.00 0.00 0.00 2.41
1758 1973 6.102615 ACATCCCCCATAGCTAGAATTTGTAA 59.897 38.462 0.00 0.00 0.00 2.41
1759 1974 6.584471 TCCCCCATAGCTAGAATTTGTAAA 57.416 37.500 0.00 0.00 0.00 2.01
1760 1975 7.161715 TCCCCCATAGCTAGAATTTGTAAAT 57.838 36.000 0.00 0.00 0.00 1.40
1761 1976 7.231467 TCCCCCATAGCTAGAATTTGTAAATC 58.769 38.462 0.00 0.00 0.00 2.17
1762 1977 6.434340 CCCCCATAGCTAGAATTTGTAAATCC 59.566 42.308 0.00 0.00 0.00 3.01
1768 1983 7.856145 AGCTAGAATTTGTAAATCCAGACTG 57.144 36.000 0.00 0.00 0.00 3.51
1779 1994 1.988956 CCAGACTGCTGAGGCTCCT 60.989 63.158 12.86 0.00 45.17 3.69
1780 1995 0.685785 CCAGACTGCTGAGGCTCCTA 60.686 60.000 12.86 0.00 45.17 2.94
1781 1996 1.412079 CAGACTGCTGAGGCTCCTAT 58.588 55.000 12.86 0.00 45.17 2.57
1782 1997 2.591923 CAGACTGCTGAGGCTCCTATA 58.408 52.381 12.86 0.00 45.17 1.31
1790 2005 5.583932 TGCTGAGGCTCCTATATATCTTGA 58.416 41.667 12.86 0.00 39.59 3.02
1791 2006 6.200852 TGCTGAGGCTCCTATATATCTTGAT 58.799 40.000 12.86 0.00 39.59 2.57
1810 2025 6.602009 TCTTGATCTGAACAAGCATCAATCAT 59.398 34.615 19.34 0.00 42.76 2.45
1811 2026 6.131544 TGATCTGAACAAGCATCAATCATG 57.868 37.500 0.00 0.00 35.29 3.07
1851 2066 6.486248 TCAACTTGAATTGAGTGAAAACTCG 58.514 36.000 1.74 0.00 39.50 4.18
1873 2088 2.892215 TCTCATTTGCTGCATCAAACCA 59.108 40.909 17.29 6.70 38.58 3.67
1974 2189 1.543607 TGGCTGTCTCTGTCTCTCTG 58.456 55.000 0.00 0.00 0.00 3.35
2006 2221 2.830923 CTGTAGAGCCATCCCCTATCTG 59.169 54.545 0.00 0.00 0.00 2.90
2047 2262 3.323243 ACGTTAACTTTGACAGATCCCG 58.677 45.455 3.71 0.00 0.00 5.14
2065 2280 1.212751 GCAGCCGGTTTCATTCACC 59.787 57.895 1.90 0.00 0.00 4.02
2086 2301 1.600485 GAACACCCACACGGTTAACTG 59.400 52.381 13.03 13.03 45.36 3.16
2100 2315 4.277423 CGGTTAACTGGGTCATTTCTTGTT 59.723 41.667 6.53 0.00 0.00 2.83
2110 2543 8.485976 TGGGTCATTTCTTGTTTTTAAACTTG 57.514 30.769 6.87 0.82 39.59 3.16
2223 2656 2.482721 CCAAAGGTACCAACATGTCGTC 59.517 50.000 15.94 0.00 0.00 4.20
2240 2673 1.394917 CGTCGCAATTCCTTCCTTCTG 59.605 52.381 0.00 0.00 0.00 3.02
2297 2730 4.119862 GGCATTCGCAGTAGATGTTCTAA 58.880 43.478 0.00 0.00 41.24 2.10
2304 2737 5.969435 TCGCAGTAGATGTTCTAATACAACG 59.031 40.000 0.00 0.00 29.58 4.10
2309 2742 8.353684 CAGTAGATGTTCTAATACAACGGATCT 58.646 37.037 0.00 0.00 29.58 2.75
2375 2808 2.819608 CCATTTGATTCCACAGTTCGGT 59.180 45.455 0.00 0.00 0.00 4.69
2387 2820 0.468226 AGTTCGGTTGCTCTTCCACA 59.532 50.000 0.00 0.00 0.00 4.17
2406 5052 4.195987 ACACCTGAACAGCAGATGCAGA 62.196 50.000 7.68 0.00 42.32 4.26
2413 5059 2.579873 ACAGCAGATGCAGAACACTTT 58.420 42.857 7.68 0.00 45.16 2.66
2414 5060 2.954318 ACAGCAGATGCAGAACACTTTT 59.046 40.909 7.68 0.00 45.16 2.27
2418 5064 3.753272 GCAGATGCAGAACACTTTTAGGA 59.247 43.478 0.00 0.00 41.59 2.94
2424 5070 5.003804 TGCAGAACACTTTTAGGAGATTCC 58.996 41.667 0.00 0.00 36.58 3.01
2438 5084 5.728637 GGAGATTCCTGAACCATTTGTTT 57.271 39.130 0.00 0.00 33.17 2.83
2439 5085 5.714047 GGAGATTCCTGAACCATTTGTTTC 58.286 41.667 0.00 0.00 33.17 2.78
2440 5086 5.243730 GGAGATTCCTGAACCATTTGTTTCA 59.756 40.000 0.00 0.00 33.17 2.69
2441 5087 6.071165 GGAGATTCCTGAACCATTTGTTTCAT 60.071 38.462 0.00 0.00 33.17 2.57
2442 5088 7.307131 AGATTCCTGAACCATTTGTTTCATT 57.693 32.000 0.00 0.00 37.29 2.57
2444 5090 8.212995 AGATTCCTGAACCATTTGTTTCATTTT 58.787 29.630 0.00 0.00 37.29 1.82
2445 5091 7.784633 TTCCTGAACCATTTGTTTCATTTTC 57.215 32.000 0.00 0.00 37.29 2.29
2447 5093 6.985645 TCCTGAACCATTTGTTTCATTTTCTG 59.014 34.615 0.00 0.00 37.29 3.02
2448 5094 6.985645 CCTGAACCATTTGTTTCATTTTCTGA 59.014 34.615 0.00 0.00 37.29 3.27
2449 5095 7.658575 CCTGAACCATTTGTTTCATTTTCTGAT 59.341 33.333 0.00 0.00 37.29 2.90
2486 5579 8.596271 TTTTTCCTTTTCGTGTTTCTTTTTCT 57.404 26.923 0.00 0.00 0.00 2.52
2487 5580 7.806149 TTTCCTTTTCGTGTTTCTTTTTCTC 57.194 32.000 0.00 0.00 0.00 2.87
2488 5581 6.753107 TCCTTTTCGTGTTTCTTTTTCTCT 57.247 33.333 0.00 0.00 0.00 3.10
2490 5583 7.599171 TCCTTTTCGTGTTTCTTTTTCTCTTT 58.401 30.769 0.00 0.00 0.00 2.52
2491 5584 8.085909 TCCTTTTCGTGTTTCTTTTTCTCTTTT 58.914 29.630 0.00 0.00 0.00 2.27
2492 5585 8.373256 CCTTTTCGTGTTTCTTTTTCTCTTTTC 58.627 33.333 0.00 0.00 0.00 2.29
2493 5586 9.129209 CTTTTCGTGTTTCTTTTTCTCTTTTCT 57.871 29.630 0.00 0.00 0.00 2.52
2494 5587 9.471084 TTTTCGTGTTTCTTTTTCTCTTTTCTT 57.529 25.926 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.037790 TCGTTCGTGACATGCCATGA 60.038 50.000 12.53 0.00 0.00 3.07
1 2 0.371301 CTCGTTCGTGACATGCCATG 59.629 55.000 2.40 2.40 0.00 3.66
2 3 0.246360 TCTCGTTCGTGACATGCCAT 59.754 50.000 0.00 0.00 0.00 4.40
3 4 0.246360 ATCTCGTTCGTGACATGCCA 59.754 50.000 0.00 0.00 0.00 4.92
4 5 1.359848 AATCTCGTTCGTGACATGCC 58.640 50.000 0.00 0.00 0.00 4.40
5 6 2.921121 TGTAATCTCGTTCGTGACATGC 59.079 45.455 0.00 0.00 0.00 4.06
6 7 3.917985 TGTGTAATCTCGTTCGTGACATG 59.082 43.478 0.00 0.00 0.00 3.21
7 8 4.168922 TGTGTAATCTCGTTCGTGACAT 57.831 40.909 0.00 0.00 0.00 3.06
8 9 3.629438 TGTGTAATCTCGTTCGTGACA 57.371 42.857 0.00 0.00 0.00 3.58
9 10 4.224433 TCTTGTGTAATCTCGTTCGTGAC 58.776 43.478 0.00 0.00 0.00 3.67
10 11 4.492791 TCTTGTGTAATCTCGTTCGTGA 57.507 40.909 0.00 0.00 0.00 4.35
11 12 6.020599 CCTTATCTTGTGTAATCTCGTTCGTG 60.021 42.308 0.00 0.00 0.00 4.35
12 13 6.034591 CCTTATCTTGTGTAATCTCGTTCGT 58.965 40.000 0.00 0.00 0.00 3.85
13 14 6.263344 TCCTTATCTTGTGTAATCTCGTTCG 58.737 40.000 0.00 0.00 0.00 3.95
14 15 7.254151 GCTTCCTTATCTTGTGTAATCTCGTTC 60.254 40.741 0.00 0.00 0.00 3.95
15 16 6.535508 GCTTCCTTATCTTGTGTAATCTCGTT 59.464 38.462 0.00 0.00 0.00 3.85
16 17 6.043411 GCTTCCTTATCTTGTGTAATCTCGT 58.957 40.000 0.00 0.00 0.00 4.18
17 18 5.463724 GGCTTCCTTATCTTGTGTAATCTCG 59.536 44.000 0.00 0.00 0.00 4.04
18 19 5.760743 GGGCTTCCTTATCTTGTGTAATCTC 59.239 44.000 0.00 0.00 0.00 2.75
19 20 5.398012 GGGGCTTCCTTATCTTGTGTAATCT 60.398 44.000 0.00 0.00 0.00 2.40
20 21 4.822350 GGGGCTTCCTTATCTTGTGTAATC 59.178 45.833 0.00 0.00 0.00 1.75
21 22 4.386424 GGGGGCTTCCTTATCTTGTGTAAT 60.386 45.833 0.00 0.00 35.33 1.89
22 23 3.053917 GGGGGCTTCCTTATCTTGTGTAA 60.054 47.826 0.00 0.00 35.33 2.41
23 24 2.508300 GGGGGCTTCCTTATCTTGTGTA 59.492 50.000 0.00 0.00 35.33 2.90
24 25 1.285078 GGGGGCTTCCTTATCTTGTGT 59.715 52.381 0.00 0.00 35.33 3.72
25 26 1.284785 TGGGGGCTTCCTTATCTTGTG 59.715 52.381 0.00 0.00 35.33 3.33
26 27 1.285078 GTGGGGGCTTCCTTATCTTGT 59.715 52.381 0.00 0.00 35.33 3.16
27 28 1.410224 GGTGGGGGCTTCCTTATCTTG 60.410 57.143 0.00 0.00 35.33 3.02
28 29 0.927029 GGTGGGGGCTTCCTTATCTT 59.073 55.000 0.00 0.00 35.33 2.40
29 30 0.994050 GGGTGGGGGCTTCCTTATCT 60.994 60.000 0.00 0.00 35.33 1.98
30 31 1.537172 GGGTGGGGGCTTCCTTATC 59.463 63.158 0.00 0.00 35.33 1.75
31 32 2.012794 GGGGTGGGGGCTTCCTTAT 61.013 63.158 0.00 0.00 35.33 1.73
32 33 2.615929 GGGGTGGGGGCTTCCTTA 60.616 66.667 0.00 0.00 35.33 2.69
43 44 3.391382 GACCTCAGTCGGGGGTGG 61.391 72.222 0.00 0.00 33.01 4.61
51 52 1.080434 GCGGTGTGAGACCTCAGTC 60.080 63.158 0.00 0.00 43.55 3.51
52 53 0.251209 TAGCGGTGTGAGACCTCAGT 60.251 55.000 0.00 0.00 43.55 3.41
53 54 0.171455 GTAGCGGTGTGAGACCTCAG 59.829 60.000 0.00 0.00 43.55 3.35
54 55 0.538746 TGTAGCGGTGTGAGACCTCA 60.539 55.000 0.00 0.00 43.55 3.86
55 56 0.818296 ATGTAGCGGTGTGAGACCTC 59.182 55.000 0.00 0.00 43.55 3.85
56 57 0.818296 GATGTAGCGGTGTGAGACCT 59.182 55.000 0.00 0.00 43.55 3.85
57 58 0.530744 TGATGTAGCGGTGTGAGACC 59.469 55.000 0.00 0.00 42.07 3.85
58 59 1.630148 GTGATGTAGCGGTGTGAGAC 58.370 55.000 0.00 0.00 0.00 3.36
59 60 0.170339 CGTGATGTAGCGGTGTGAGA 59.830 55.000 0.00 0.00 0.00 3.27
60 61 0.109272 ACGTGATGTAGCGGTGTGAG 60.109 55.000 0.00 0.00 0.00 3.51
61 62 0.109458 GACGTGATGTAGCGGTGTGA 60.109 55.000 0.00 0.00 0.00 3.58
62 63 1.403225 CGACGTGATGTAGCGGTGTG 61.403 60.000 0.00 0.00 0.00 3.82
63 64 1.154093 CGACGTGATGTAGCGGTGT 60.154 57.895 0.00 0.00 0.00 4.16
64 65 2.505498 GCGACGTGATGTAGCGGTG 61.505 63.158 0.00 0.00 39.44 4.94
65 66 2.202570 GCGACGTGATGTAGCGGT 60.203 61.111 0.00 0.00 39.44 5.68
386 387 6.231211 AGACATTCCGAGTGAATACAGTTTT 58.769 36.000 0.00 0.00 41.85 2.43
387 388 5.794894 AGACATTCCGAGTGAATACAGTTT 58.205 37.500 0.00 0.00 41.85 2.66
388 389 5.407407 AGACATTCCGAGTGAATACAGTT 57.593 39.130 0.00 0.00 41.85 3.16
389 390 5.407407 AAGACATTCCGAGTGAATACAGT 57.593 39.130 0.00 0.00 41.85 3.55
390 391 5.446473 GCAAAGACATTCCGAGTGAATACAG 60.446 44.000 0.00 0.00 41.85 2.74
391 392 4.391830 GCAAAGACATTCCGAGTGAATACA 59.608 41.667 0.00 0.00 41.85 2.29
392 393 4.391830 TGCAAAGACATTCCGAGTGAATAC 59.608 41.667 0.00 0.00 41.85 1.89
393 394 4.391830 GTGCAAAGACATTCCGAGTGAATA 59.608 41.667 0.00 0.00 41.85 1.75
394 395 3.189287 GTGCAAAGACATTCCGAGTGAAT 59.811 43.478 0.00 0.00 44.67 2.57
395 396 2.548057 GTGCAAAGACATTCCGAGTGAA 59.452 45.455 0.00 0.00 37.38 3.18
396 397 2.143122 GTGCAAAGACATTCCGAGTGA 58.857 47.619 0.00 0.00 0.00 3.41
397 398 1.872952 TGTGCAAAGACATTCCGAGTG 59.127 47.619 0.00 0.00 0.00 3.51
398 399 2.254546 TGTGCAAAGACATTCCGAGT 57.745 45.000 0.00 0.00 0.00 4.18
399 400 2.743664 TCATGTGCAAAGACATTCCGAG 59.256 45.455 0.00 0.00 34.18 4.63
400 401 2.483877 GTCATGTGCAAAGACATTCCGA 59.516 45.455 8.95 0.00 34.18 4.55
401 402 2.414559 GGTCATGTGCAAAGACATTCCG 60.415 50.000 14.11 0.00 34.18 4.30
402 403 2.821969 AGGTCATGTGCAAAGACATTCC 59.178 45.455 14.11 7.13 34.18 3.01
403 404 4.510038 AAGGTCATGTGCAAAGACATTC 57.490 40.909 14.11 0.81 34.18 2.67
404 405 4.942761 AAAGGTCATGTGCAAAGACATT 57.057 36.364 14.11 11.15 37.82 2.71
405 406 4.942761 AAAAGGTCATGTGCAAAGACAT 57.057 36.364 14.11 6.34 37.01 3.06
406 407 4.278170 CCTAAAAGGTCATGTGCAAAGACA 59.722 41.667 14.11 0.00 34.04 3.41
407 408 4.798574 CCTAAAAGGTCATGTGCAAAGAC 58.201 43.478 6.02 6.02 0.00 3.01
421 422 1.449070 GCGGGTCGGACCTAAAAGG 60.449 63.158 25.39 9.99 42.49 3.11
422 423 1.017701 GTGCGGGTCGGACCTAAAAG 61.018 60.000 25.39 13.20 42.09 2.27
423 424 1.004679 GTGCGGGTCGGACCTAAAA 60.005 57.895 25.39 7.59 42.09 1.52
424 425 2.658422 GTGCGGGTCGGACCTAAA 59.342 61.111 25.39 9.30 42.09 1.85
430 431 3.851128 TGTTGTGTGCGGGTCGGA 61.851 61.111 0.00 0.00 0.00 4.55
431 432 3.645975 GTGTTGTGTGCGGGTCGG 61.646 66.667 0.00 0.00 0.00 4.79
432 433 3.645975 GGTGTTGTGTGCGGGTCG 61.646 66.667 0.00 0.00 0.00 4.79
433 434 3.645975 CGGTGTTGTGTGCGGGTC 61.646 66.667 0.00 0.00 0.00 4.46
434 435 4.476752 ACGGTGTTGTGTGCGGGT 62.477 61.111 0.00 0.00 0.00 5.28
435 436 3.947841 CACGGTGTTGTGTGCGGG 61.948 66.667 0.00 0.00 35.12 6.13
436 437 2.170260 GATCACGGTGTTGTGTGCGG 62.170 60.000 8.17 0.00 40.74 5.69
437 438 1.204062 GATCACGGTGTTGTGTGCG 59.796 57.895 8.17 0.00 40.74 5.34
438 439 1.574428 GGATCACGGTGTTGTGTGC 59.426 57.895 8.17 0.00 40.74 4.57
439 440 1.565156 CGGGATCACGGTGTTGTGTG 61.565 60.000 10.23 0.00 40.74 3.82
440 441 1.301401 CGGGATCACGGTGTTGTGT 60.301 57.895 10.23 0.00 40.74 3.72
441 442 2.677003 GCGGGATCACGGTGTTGTG 61.677 63.158 20.80 0.00 41.28 3.33
442 443 2.358247 GCGGGATCACGGTGTTGT 60.358 61.111 20.80 0.00 0.00 3.32
443 444 3.487202 CGCGGGATCACGGTGTTG 61.487 66.667 20.80 0.00 0.00 3.33
444 445 3.927163 GACGCGGGATCACGGTGTT 62.927 63.158 20.80 0.00 42.30 3.32
445 446 4.430765 GACGCGGGATCACGGTGT 62.431 66.667 20.80 12.40 44.51 4.16
446 447 4.129737 AGACGCGGGATCACGGTG 62.130 66.667 20.80 9.07 36.15 4.94
447 448 3.823330 GAGACGCGGGATCACGGT 61.823 66.667 20.80 15.19 0.00 4.83
448 449 2.629050 AATGAGACGCGGGATCACGG 62.629 60.000 20.80 11.82 0.00 4.94
449 450 0.806102 AAATGAGACGCGGGATCACG 60.806 55.000 14.47 14.47 0.00 4.35
450 451 0.931005 GAAATGAGACGCGGGATCAC 59.069 55.000 12.47 0.00 0.00 3.06
451 452 0.534873 TGAAATGAGACGCGGGATCA 59.465 50.000 12.47 11.99 0.00 2.92
452 453 1.594862 CTTGAAATGAGACGCGGGATC 59.405 52.381 12.47 5.73 0.00 3.36
453 454 1.066143 ACTTGAAATGAGACGCGGGAT 60.066 47.619 12.47 0.00 0.00 3.85
454 455 0.320374 ACTTGAAATGAGACGCGGGA 59.680 50.000 12.47 0.00 0.00 5.14
455 456 1.927174 CTACTTGAAATGAGACGCGGG 59.073 52.381 12.47 0.00 0.00 6.13
456 457 2.607187 ACTACTTGAAATGAGACGCGG 58.393 47.619 12.47 0.00 0.00 6.46
457 458 4.413087 AGTACTACTTGAAATGAGACGCG 58.587 43.478 3.53 3.53 0.00 6.01
458 459 6.365247 TCAAAGTACTACTTGAAATGAGACGC 59.635 38.462 7.41 0.00 38.66 5.19
459 460 7.869016 TCAAAGTACTACTTGAAATGAGACG 57.131 36.000 7.41 0.00 38.66 4.18
460 461 8.874816 GGATCAAAGTACTACTTGAAATGAGAC 58.125 37.037 12.75 2.53 38.66 3.36
461 462 8.593679 TGGATCAAAGTACTACTTGAAATGAGA 58.406 33.333 12.75 0.00 38.66 3.27
462 463 8.660373 GTGGATCAAAGTACTACTTGAAATGAG 58.340 37.037 12.75 0.00 38.66 2.90
463 464 7.330946 CGTGGATCAAAGTACTACTTGAAATGA 59.669 37.037 12.75 3.38 38.66 2.57
464 465 7.413000 CCGTGGATCAAAGTACTACTTGAAATG 60.413 40.741 12.75 8.01 38.66 2.32
465 466 6.594159 CCGTGGATCAAAGTACTACTTGAAAT 59.406 38.462 12.75 0.00 38.66 2.17
466 467 5.929992 CCGTGGATCAAAGTACTACTTGAAA 59.070 40.000 12.75 1.79 38.66 2.69
467 468 5.011329 ACCGTGGATCAAAGTACTACTTGAA 59.989 40.000 12.75 0.00 38.66 2.69
468 469 4.525487 ACCGTGGATCAAAGTACTACTTGA 59.475 41.667 11.45 11.45 38.66 3.02
469 470 4.625742 CACCGTGGATCAAAGTACTACTTG 59.374 45.833 2.07 0.00 38.66 3.16
470 471 4.322499 CCACCGTGGATCAAAGTACTACTT 60.322 45.833 12.68 0.00 40.96 2.24
471 472 3.194968 CCACCGTGGATCAAAGTACTACT 59.805 47.826 12.68 0.00 40.96 2.57
472 473 3.056322 ACCACCGTGGATCAAAGTACTAC 60.056 47.826 24.80 0.00 40.96 2.73
473 474 3.167485 ACCACCGTGGATCAAAGTACTA 58.833 45.455 24.80 0.00 40.96 1.82
474 475 1.975680 ACCACCGTGGATCAAAGTACT 59.024 47.619 24.80 0.00 40.96 2.73
475 476 2.467566 ACCACCGTGGATCAAAGTAC 57.532 50.000 24.80 0.00 40.96 2.73
476 477 4.040706 AGTTAACCACCGTGGATCAAAGTA 59.959 41.667 24.80 0.00 40.96 2.24
477 478 3.143728 GTTAACCACCGTGGATCAAAGT 58.856 45.455 24.80 0.00 40.96 2.66
478 479 3.408634 AGTTAACCACCGTGGATCAAAG 58.591 45.455 24.80 0.00 40.96 2.77
479 480 3.495434 AGTTAACCACCGTGGATCAAA 57.505 42.857 24.80 9.15 40.96 2.69
480 481 3.618019 GCTAGTTAACCACCGTGGATCAA 60.618 47.826 24.80 11.18 40.96 2.57
481 482 2.093869 GCTAGTTAACCACCGTGGATCA 60.094 50.000 24.80 0.49 40.96 2.92
482 483 2.547826 GCTAGTTAACCACCGTGGATC 58.452 52.381 24.80 10.49 40.96 3.36
483 484 1.134907 CGCTAGTTAACCACCGTGGAT 60.135 52.381 24.80 15.15 40.96 3.41
484 485 0.244450 CGCTAGTTAACCACCGTGGA 59.756 55.000 24.80 0.00 40.96 4.02
485 486 0.037975 ACGCTAGTTAACCACCGTGG 60.038 55.000 16.47 16.47 45.02 4.94
486 487 1.343506 GACGCTAGTTAACCACCGTG 58.656 55.000 16.40 6.45 0.00 4.94
487 488 0.109597 CGACGCTAGTTAACCACCGT 60.110 55.000 12.80 12.80 0.00 4.83
488 489 0.799534 CCGACGCTAGTTAACCACCG 60.800 60.000 0.88 5.00 0.00 4.94
489 490 1.080435 GCCGACGCTAGTTAACCACC 61.080 60.000 0.88 0.00 0.00 4.61
490 491 1.080435 GGCCGACGCTAGTTAACCAC 61.080 60.000 0.88 0.00 34.44 4.16
491 492 1.216178 GGCCGACGCTAGTTAACCA 59.784 57.895 0.88 0.00 34.44 3.67
492 493 0.390209 TTGGCCGACGCTAGTTAACC 60.390 55.000 0.88 0.00 34.44 2.85
493 494 0.997196 CTTGGCCGACGCTAGTTAAC 59.003 55.000 0.00 0.00 34.44 2.01
494 495 0.604578 ACTTGGCCGACGCTAGTTAA 59.395 50.000 0.00 0.00 34.44 2.01
495 496 1.462616 TACTTGGCCGACGCTAGTTA 58.537 50.000 0.00 0.00 33.72 2.24
496 497 0.822164 ATACTTGGCCGACGCTAGTT 59.178 50.000 0.00 0.00 33.72 2.24
497 498 0.384669 GATACTTGGCCGACGCTAGT 59.615 55.000 0.00 0.00 35.20 2.57
498 499 0.660595 CGATACTTGGCCGACGCTAG 60.661 60.000 0.00 0.00 34.44 3.42
499 500 1.357690 CGATACTTGGCCGACGCTA 59.642 57.895 0.00 0.00 34.44 4.26
500 501 2.104331 CGATACTTGGCCGACGCT 59.896 61.111 0.00 0.00 34.44 5.07
501 502 2.202703 ACGATACTTGGCCGACGC 60.203 61.111 0.00 0.00 0.00 5.19
502 503 0.457166 TTCACGATACTTGGCCGACG 60.457 55.000 0.00 0.00 0.00 5.12
503 504 1.659098 CTTTCACGATACTTGGCCGAC 59.341 52.381 0.00 0.00 0.00 4.79
504 505 1.546923 TCTTTCACGATACTTGGCCGA 59.453 47.619 0.00 0.00 0.00 5.54
505 506 2.004583 TCTTTCACGATACTTGGCCG 57.995 50.000 0.00 0.00 0.00 6.13
506 507 3.938963 TGATTCTTTCACGATACTTGGCC 59.061 43.478 0.00 0.00 0.00 5.36
507 508 5.557136 CGATGATTCTTTCACGATACTTGGC 60.557 44.000 0.00 0.00 37.11 4.52
508 509 5.050769 CCGATGATTCTTTCACGATACTTGG 60.051 44.000 0.00 0.00 37.11 3.61
509 510 5.520288 ACCGATGATTCTTTCACGATACTTG 59.480 40.000 0.00 0.00 37.11 3.16
510 511 5.661458 ACCGATGATTCTTTCACGATACTT 58.339 37.500 0.00 0.00 37.11 2.24
511 512 5.263968 ACCGATGATTCTTTCACGATACT 57.736 39.130 0.00 0.00 37.11 2.12
512 513 4.146616 CGACCGATGATTCTTTCACGATAC 59.853 45.833 0.00 0.00 37.11 2.24
513 514 4.287720 CGACCGATGATTCTTTCACGATA 58.712 43.478 0.00 0.00 37.11 2.92
514 515 3.116300 CGACCGATGATTCTTTCACGAT 58.884 45.455 0.00 0.00 37.11 3.73
515 516 2.526077 CGACCGATGATTCTTTCACGA 58.474 47.619 0.00 0.00 37.11 4.35
516 517 1.005975 GCGACCGATGATTCTTTCACG 60.006 52.381 0.00 0.00 37.11 4.35
517 518 1.327764 GGCGACCGATGATTCTTTCAC 59.672 52.381 0.00 0.00 37.11 3.18
518 519 1.207089 AGGCGACCGATGATTCTTTCA 59.793 47.619 0.00 0.00 39.12 2.69
519 520 1.941325 AGGCGACCGATGATTCTTTC 58.059 50.000 0.00 0.00 0.00 2.62
520 521 2.803492 GCTAGGCGACCGATGATTCTTT 60.803 50.000 0.00 0.00 0.00 2.52
521 522 1.269831 GCTAGGCGACCGATGATTCTT 60.270 52.381 0.00 0.00 0.00 2.52
522 523 0.315568 GCTAGGCGACCGATGATTCT 59.684 55.000 0.00 0.00 0.00 2.40
523 524 0.032130 TGCTAGGCGACCGATGATTC 59.968 55.000 0.00 0.00 0.00 2.52
524 525 0.464036 TTGCTAGGCGACCGATGATT 59.536 50.000 0.00 0.00 0.00 2.57
525 526 0.032678 CTTGCTAGGCGACCGATGAT 59.967 55.000 0.00 0.00 0.00 2.45
526 527 1.437573 CTTGCTAGGCGACCGATGA 59.562 57.895 0.00 0.00 0.00 2.92
527 528 1.592669 CCTTGCTAGGCGACCGATG 60.593 63.158 0.00 0.00 33.99 3.84
528 529 1.739338 CTCCTTGCTAGGCGACCGAT 61.739 60.000 9.60 0.00 41.69 4.18
529 530 2.361992 TCCTTGCTAGGCGACCGA 60.362 61.111 9.60 0.00 41.69 4.69
530 531 2.105128 CTCCTTGCTAGGCGACCG 59.895 66.667 9.60 0.00 41.69 4.79
531 532 1.142097 GTCTCCTTGCTAGGCGACC 59.858 63.158 22.08 8.12 46.21 4.79
532 533 4.816990 GTCTCCTTGCTAGGCGAC 57.183 61.111 19.14 19.14 45.99 5.19
533 534 0.898326 TGTGTCTCCTTGCTAGGCGA 60.898 55.000 9.60 6.01 41.69 5.54
534 535 0.176680 ATGTGTCTCCTTGCTAGGCG 59.823 55.000 9.60 3.26 41.69 5.52
535 536 1.208052 TGATGTGTCTCCTTGCTAGGC 59.792 52.381 9.60 0.00 41.69 3.93
536 537 2.499289 ACTGATGTGTCTCCTTGCTAGG 59.501 50.000 8.03 8.03 43.46 3.02
537 538 3.194329 TCACTGATGTGTCTCCTTGCTAG 59.806 47.826 0.00 0.00 44.14 3.42
538 539 3.165071 TCACTGATGTGTCTCCTTGCTA 58.835 45.455 0.00 0.00 44.14 3.49
539 540 1.973515 TCACTGATGTGTCTCCTTGCT 59.026 47.619 0.00 0.00 44.14 3.91
540 541 2.344950 CTCACTGATGTGTCTCCTTGC 58.655 52.381 0.00 0.00 44.14 4.01
541 542 2.344950 GCTCACTGATGTGTCTCCTTG 58.655 52.381 0.00 0.00 44.14 3.61
542 543 1.277557 GGCTCACTGATGTGTCTCCTT 59.722 52.381 0.00 0.00 44.14 3.36
543 544 0.901124 GGCTCACTGATGTGTCTCCT 59.099 55.000 0.00 0.00 44.14 3.69
544 545 0.901124 AGGCTCACTGATGTGTCTCC 59.099 55.000 0.00 0.00 44.14 3.71
545 546 2.758736 AAGGCTCACTGATGTGTCTC 57.241 50.000 0.00 0.00 44.14 3.36
546 547 4.511527 CATTAAGGCTCACTGATGTGTCT 58.488 43.478 0.00 0.00 44.14 3.41
547 548 3.064545 GCATTAAGGCTCACTGATGTGTC 59.935 47.826 4.54 0.00 44.14 3.67
548 549 3.012518 GCATTAAGGCTCACTGATGTGT 58.987 45.455 4.54 0.00 44.14 3.72
549 550 3.064958 CAGCATTAAGGCTCACTGATGTG 59.935 47.826 12.49 0.00 43.68 3.21
550 551 3.054875 TCAGCATTAAGGCTCACTGATGT 60.055 43.478 12.49 0.00 43.68 3.06
567 568 0.407528 TTTTATGCCCACCCTCAGCA 59.592 50.000 0.00 0.00 41.50 4.41
571 572 0.815095 CGGTTTTTATGCCCACCCTC 59.185 55.000 0.00 0.00 0.00 4.30
597 598 1.002201 TCGATGTCGGTTTGGCCTTTA 59.998 47.619 3.32 0.00 40.29 1.85
605 606 2.536761 TTCAGGTTCGATGTCGGTTT 57.463 45.000 2.25 0.00 40.29 3.27
650 651 9.988350 GTAGCAGAGATGAAAATCGAATTTTTA 57.012 29.630 0.00 0.84 42.15 1.52
656 657 4.112634 CCGTAGCAGAGATGAAAATCGAA 58.887 43.478 0.00 0.00 0.00 3.71
657 658 3.706698 CCGTAGCAGAGATGAAAATCGA 58.293 45.455 0.00 0.00 0.00 3.59
661 662 1.277842 TGGCCGTAGCAGAGATGAAAA 59.722 47.619 0.00 0.00 42.56 2.29
666 667 0.461961 GAACTGGCCGTAGCAGAGAT 59.538 55.000 0.00 0.00 42.56 2.75
679 680 4.701956 AACCATGCTAAATTCGAACTGG 57.298 40.909 0.00 1.97 0.00 4.00
681 682 5.708230 TGGTTAACCATGCTAAATTCGAACT 59.292 36.000 23.69 0.00 42.01 3.01
715 720 5.465724 GTGTCCTGATGTATATTCGGTTTCC 59.534 44.000 0.00 0.00 0.00 3.13
716 721 6.046593 TGTGTCCTGATGTATATTCGGTTTC 58.953 40.000 0.00 0.00 0.00 2.78
717 722 5.984725 TGTGTCCTGATGTATATTCGGTTT 58.015 37.500 0.00 0.00 0.00 3.27
718 723 5.607939 TGTGTCCTGATGTATATTCGGTT 57.392 39.130 0.00 0.00 0.00 4.44
730 735 1.068055 GGTCGTACGTTGTGTCCTGAT 60.068 52.381 16.05 0.00 0.00 2.90
781 786 0.322975 AGCACACACTGGACCTCATC 59.677 55.000 0.00 0.00 0.00 2.92
810 819 2.009774 ACGTGCTGACCAATAATCTGC 58.990 47.619 0.00 0.00 40.39 4.26
822 831 0.037419 TAGCTTGATGCACGTGCTGA 60.037 50.000 37.59 21.95 45.94 4.26
908 917 2.745884 CATGCACGGGAAGGCGAA 60.746 61.111 0.00 0.00 0.00 4.70
1033 1047 4.849329 GGCGAGAACGACGGCGAT 62.849 66.667 22.49 4.67 45.03 4.58
1078 1092 4.838152 CTGCCCGATGGTGACCGG 62.838 72.222 0.00 0.00 44.94 5.28
1079 1093 4.838152 CCTGCCCGATGGTGACCG 62.838 72.222 0.00 0.00 0.00 4.79
1197 1211 4.722700 GCATGGGTCACCGCCAGT 62.723 66.667 0.00 0.00 40.75 4.00
1435 1449 1.379044 CCTCCTTCATGTGGCACCC 60.379 63.158 16.26 0.00 0.00 4.61
1436 1450 1.379044 CCCTCCTTCATGTGGCACC 60.379 63.158 16.26 0.00 0.00 5.01
1594 1611 6.821482 CAGTGCACTGTAGTACAAACATAAG 58.179 40.000 34.04 6.59 39.09 1.73
1703 1728 5.936956 CCTAGCAGGAATGATTGGATAAGTC 59.063 44.000 0.00 0.00 37.67 3.01
1733 1948 4.416848 ACAAATTCTAGCTATGGGGGATGT 59.583 41.667 0.00 0.00 0.00 3.06
1734 1949 4.990526 ACAAATTCTAGCTATGGGGGATG 58.009 43.478 0.00 0.00 0.00 3.51
1735 1950 6.780198 TTACAAATTCTAGCTATGGGGGAT 57.220 37.500 0.00 0.00 0.00 3.85
1739 1954 7.939039 TCTGGATTTACAAATTCTAGCTATGGG 59.061 37.037 0.00 0.00 0.00 4.00
1741 1956 9.553064 AGTCTGGATTTACAAATTCTAGCTATG 57.447 33.333 0.00 0.00 0.00 2.23
1742 1957 9.553064 CAGTCTGGATTTACAAATTCTAGCTAT 57.447 33.333 0.00 0.00 0.00 2.97
1743 1958 7.495934 GCAGTCTGGATTTACAAATTCTAGCTA 59.504 37.037 1.14 0.00 0.00 3.32
1744 1959 6.317391 GCAGTCTGGATTTACAAATTCTAGCT 59.683 38.462 1.14 0.00 0.00 3.32
1745 1960 6.317391 AGCAGTCTGGATTTACAAATTCTAGC 59.683 38.462 1.14 0.00 0.00 3.42
1746 1961 7.550551 TCAGCAGTCTGGATTTACAAATTCTAG 59.449 37.037 1.14 0.00 40.69 2.43
1747 1962 7.394016 TCAGCAGTCTGGATTTACAAATTCTA 58.606 34.615 1.14 0.00 40.69 2.10
1748 1963 6.240894 TCAGCAGTCTGGATTTACAAATTCT 58.759 36.000 1.14 0.00 40.69 2.40
1749 1964 6.404074 CCTCAGCAGTCTGGATTTACAAATTC 60.404 42.308 1.14 0.00 40.69 2.17
1750 1965 5.416952 CCTCAGCAGTCTGGATTTACAAATT 59.583 40.000 1.14 0.00 40.69 1.82
1751 1966 4.946157 CCTCAGCAGTCTGGATTTACAAAT 59.054 41.667 1.14 0.00 40.69 2.32
1752 1967 4.326826 CCTCAGCAGTCTGGATTTACAAA 58.673 43.478 1.14 0.00 40.69 2.83
1753 1968 3.869912 GCCTCAGCAGTCTGGATTTACAA 60.870 47.826 1.14 0.00 40.69 2.41
1754 1969 2.355108 GCCTCAGCAGTCTGGATTTACA 60.355 50.000 1.14 0.00 40.69 2.41
1755 1970 2.093235 AGCCTCAGCAGTCTGGATTTAC 60.093 50.000 1.14 0.00 43.56 2.01
1756 1971 2.169352 GAGCCTCAGCAGTCTGGATTTA 59.831 50.000 1.14 0.00 43.56 1.40
1757 1972 0.990374 AGCCTCAGCAGTCTGGATTT 59.010 50.000 1.14 0.00 43.56 2.17
1758 1973 0.540923 GAGCCTCAGCAGTCTGGATT 59.459 55.000 1.14 0.00 43.56 3.01
1759 1974 1.336632 GGAGCCTCAGCAGTCTGGAT 61.337 60.000 1.14 0.00 43.56 3.41
1760 1975 1.986757 GGAGCCTCAGCAGTCTGGA 60.987 63.158 1.14 0.00 43.56 3.86
1761 1976 0.685785 TAGGAGCCTCAGCAGTCTGG 60.686 60.000 1.14 0.00 43.56 3.86
1762 1977 1.412079 ATAGGAGCCTCAGCAGTCTG 58.588 55.000 0.00 0.00 43.56 3.51
1768 1983 6.550854 AGATCAAGATATATAGGAGCCTCAGC 59.449 42.308 0.00 0.00 40.32 4.26
1780 1995 9.788889 TTGATGCTTGTTCAGATCAAGATATAT 57.211 29.630 21.02 10.94 43.17 0.86
1781 1996 9.788889 ATTGATGCTTGTTCAGATCAAGATATA 57.211 29.630 21.02 7.53 43.17 0.86
1782 1997 8.693120 ATTGATGCTTGTTCAGATCAAGATAT 57.307 30.769 21.02 14.72 43.17 1.63
1810 2025 2.031919 AATCAGACGCGGTTGGCA 59.968 55.556 12.47 0.00 43.84 4.92
1811 2026 1.573829 TTGAATCAGACGCGGTTGGC 61.574 55.000 12.47 2.75 38.69 4.52
1817 2032 3.729526 ATTCAAGTTGAATCAGACGCG 57.270 42.857 22.70 3.53 43.03 6.01
1851 2066 3.248266 GGTTTGATGCAGCAAATGAGAC 58.752 45.455 30.49 18.85 39.65 3.36
1882 2097 2.496070 TCATACAGCGTAGACTTTGGCT 59.504 45.455 0.00 0.00 35.84 4.75
1974 2189 2.202566 GGCTCTACAGGCGTTGTTATC 58.797 52.381 0.17 0.00 41.29 1.75
2006 2221 1.808411 TGACGCTCCTTTTCATGTCC 58.192 50.000 0.00 0.00 0.00 4.02
2047 2262 1.212751 GGTGAATGAAACCGGCTGC 59.787 57.895 0.00 0.00 0.00 5.25
2086 2301 8.487313 ACAAGTTTAAAAACAAGAAATGACCC 57.513 30.769 8.21 0.00 41.30 4.46
2110 2543 6.535508 AGAGCAATCCGTTTGAACTATTAGAC 59.464 38.462 0.00 0.00 37.53 2.59
2114 2547 5.122396 GTGAGAGCAATCCGTTTGAACTATT 59.878 40.000 0.00 0.00 37.53 1.73
2223 2656 0.453390 GCCAGAAGGAAGGAATTGCG 59.547 55.000 0.00 0.00 36.89 4.85
2240 2673 0.970640 AAATTTACCCACGGTTGGCC 59.029 50.000 0.00 0.00 42.35 5.36
2297 2730 5.010516 CAGGAGAGATCAAGATCCGTTGTAT 59.989 44.000 6.45 0.00 38.58 2.29
2304 2737 3.703556 TGACACAGGAGAGATCAAGATCC 59.296 47.826 6.45 0.00 38.58 3.36
2309 2742 2.028658 GCAGTGACACAGGAGAGATCAA 60.029 50.000 8.59 0.00 0.00 2.57
2346 2779 3.282885 GTGGAATCAAATGGGACTCTCC 58.717 50.000 0.00 0.00 35.23 3.71
2361 2794 1.072331 AGAGCAACCGAACTGTGGAAT 59.928 47.619 0.00 0.00 0.00 3.01
2375 2808 1.211703 TGTTCAGGTGTGGAAGAGCAA 59.788 47.619 0.00 0.00 0.00 3.91
2387 2820 0.689055 TCTGCATCTGCTGTTCAGGT 59.311 50.000 3.53 0.00 43.06 4.00
2402 2835 5.553290 GGAATCTCCTAAAAGTGTTCTGC 57.447 43.478 0.00 0.00 32.53 4.26
2413 5059 6.552008 AACAAATGGTTCAGGAATCTCCTAA 58.448 36.000 0.00 0.00 39.54 2.69
2414 5060 6.139679 AACAAATGGTTCAGGAATCTCCTA 57.860 37.500 0.00 0.00 39.54 2.94
2461 5554 8.596271 AGAAAAAGAAACACGAAAAGGAAAAA 57.404 26.923 0.00 0.00 0.00 1.94
2466 5559 7.812309 AAAGAGAAAAAGAAACACGAAAAGG 57.188 32.000 0.00 0.00 0.00 3.11
2469 5562 9.471084 AAAGAAAAGAGAAAAAGAAACACGAAA 57.529 25.926 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.