Multiple sequence alignment - TraesCS4A01G364600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G364600 chr4A 100.000 4502 0 0 1000 5501 637934945 637930444 0.000000e+00 8314
1 TraesCS4A01G364600 chr4A 100.000 602 0 0 1 602 637935944 637935343 0.000000e+00 1112
2 TraesCS4A01G364600 chr4A 91.529 484 28 5 4209 4688 703790338 703790812 0.000000e+00 654
3 TraesCS4A01G364600 chr4A 91.322 484 29 6 4209 4688 10027303 10026829 0.000000e+00 649
4 TraesCS4A01G364600 chr4A 91.322 484 29 5 4209 4688 727041972 727042446 0.000000e+00 649
5 TraesCS4A01G364600 chr4A 89.418 189 13 7 4021 4206 727041755 727041939 1.190000e-56 231
6 TraesCS4A01G364600 chr4A 88.889 189 14 7 4021 4206 10027520 10027336 5.540000e-55 226
7 TraesCS4A01G364600 chr4A 89.714 175 12 6 4021 4193 703790121 703790291 9.280000e-53 219
8 TraesCS4A01G364600 chr4A 94.495 109 5 1 5366 5473 181949411 181949519 3.410000e-37 167
9 TraesCS4A01G364600 chr4A 92.661 109 7 1 5366 5473 632136461 632136353 7.380000e-34 156
10 TraesCS4A01G364600 chr5D 91.894 4355 193 58 1000 5297 533999424 534003675 0.000000e+00 5939
11 TraesCS4A01G364600 chr5B 92.874 2063 75 30 2791 4843 674264310 674266310 0.000000e+00 2929
12 TraesCS4A01G364600 chr5B 90.833 1800 110 24 1000 2765 674262536 674264314 0.000000e+00 2359
13 TraesCS4A01G364600 chr5B 83.791 401 23 20 232 602 674261962 674262350 5.280000e-90 342
14 TraesCS4A01G364600 chr5B 87.190 242 14 5 5052 5293 674266630 674266854 5.470000e-65 259
15 TraesCS4A01G364600 chr5B 93.333 105 6 1 5372 5475 82470114 82470010 2.650000e-33 154
16 TraesCS4A01G364600 chr6A 91.736 484 27 5 4209 4688 571221453 571220979 0.000000e+00 660
17 TraesCS4A01G364600 chr6A 89.674 184 13 6 4021 4202 571221670 571221491 4.290000e-56 230
18 TraesCS4A01G364600 chr1B 90.909 484 31 5 4209 4688 562248907 562249381 6.010000e-179 638
19 TraesCS4A01G364600 chr1B 90.286 175 11 6 4021 4193 562248690 562248860 1.990000e-54 224
20 TraesCS4A01G364600 chr1B 89.256 121 10 3 5366 5484 585555099 585555218 1.230000e-31 148
21 TraesCS4A01G364600 chr7B 90.496 484 33 5 4209 4688 660138326 660138800 1.300000e-175 627
22 TraesCS4A01G364600 chr7B 88.360 189 15 7 4021 4206 660138109 660138293 2.580000e-53 220
23 TraesCS4A01G364600 chr1A 90.496 484 28 9 4209 4688 417203432 417202963 1.680000e-174 623
24 TraesCS4A01G364600 chr1A 89.130 184 14 5 4021 4202 417203649 417203470 1.990000e-54 224
25 TraesCS4A01G364600 chr3A 92.105 114 8 1 5366 5478 718043093 718042980 5.700000e-35 159
26 TraesCS4A01G364600 chr3B 93.458 107 6 1 5366 5471 190911759 190911653 2.050000e-34 158
27 TraesCS4A01G364600 chr2A 91.304 115 8 2 5366 5478 676458910 676459024 7.380000e-34 156
28 TraesCS4A01G364600 chrUn 88.976 127 11 3 5366 5490 81697127 81697252 2.650000e-33 154
29 TraesCS4A01G364600 chr4B 90.517 116 9 2 5366 5479 187359229 187359114 9.540000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G364600 chr4A 637930444 637935944 5500 True 4713.00 8314 100.0000 1 5501 2 chr4A.!!$R3 5500
1 TraesCS4A01G364600 chr4A 727041755 727042446 691 False 440.00 649 90.3700 4021 4688 2 chr4A.!!$F3 667
2 TraesCS4A01G364600 chr4A 10026829 10027520 691 True 437.50 649 90.1055 4021 4688 2 chr4A.!!$R2 667
3 TraesCS4A01G364600 chr4A 703790121 703790812 691 False 436.50 654 90.6215 4021 4688 2 chr4A.!!$F2 667
4 TraesCS4A01G364600 chr5D 533999424 534003675 4251 False 5939.00 5939 91.8940 1000 5297 1 chr5D.!!$F1 4297
5 TraesCS4A01G364600 chr5B 674261962 674266854 4892 False 1472.25 2929 88.6720 232 5293 4 chr5B.!!$F1 5061
6 TraesCS4A01G364600 chr6A 571220979 571221670 691 True 445.00 660 90.7050 4021 4688 2 chr6A.!!$R1 667
7 TraesCS4A01G364600 chr1B 562248690 562249381 691 False 431.00 638 90.5975 4021 4688 2 chr1B.!!$F2 667
8 TraesCS4A01G364600 chr7B 660138109 660138800 691 False 423.50 627 89.4280 4021 4688 2 chr7B.!!$F1 667
9 TraesCS4A01G364600 chr1A 417202963 417203649 686 True 423.50 623 89.8130 4021 4688 2 chr1A.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.031721 ACGTGAGTCGGTTCAAGTCC 59.968 55.000 0.00 0.0 44.19 3.85 F
299 300 0.108138 AGTCAACATACCGAGGCTGC 60.108 55.000 0.00 0.0 0.00 5.25 F
516 531 0.252103 TACTTTGCCCTCGTCCTCCT 60.252 55.000 0.00 0.0 0.00 3.69 F
1678 1714 0.607217 TTGTGGATGGTGAGCAGCAG 60.607 55.000 1.35 0.0 42.52 4.24 F
1919 1971 0.874390 TTCCGCTGATTGTGCTTGAC 59.126 50.000 0.00 0.0 0.00 3.18 F
2004 2057 1.093972 TGTATCTGTGCCAATTGCCG 58.906 50.000 0.00 0.0 40.16 5.69 F
2177 2242 1.168407 TGTTCTGCTGCAGACAAGCC 61.168 55.000 30.47 16.2 40.46 4.35 F
2308 2373 1.467342 GTGTTAAATGGCGGTGACTCC 59.533 52.381 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1400 1.133809 ACCCTGCGCCCCACATATAT 61.134 55.000 4.18 0.00 0.00 0.86 R
2177 2242 1.440893 CACTCCTCCGCATCCTCAG 59.559 63.158 0.00 0.00 0.00 3.35 R
2224 2289 1.767088 TCCCAGAGATCATCAAGGCAG 59.233 52.381 0.00 0.00 0.00 4.85 R
3421 3503 0.609957 TCCAACTGGATGGCAGCAAG 60.610 55.000 5.40 5.40 39.78 4.01 R
3718 3802 1.745087 CAACGTTATGGCCAGATGCTT 59.255 47.619 13.05 0.00 40.92 3.91 R
3801 3885 4.081697 GGCAAATGTTATAACTTGGCCAGT 60.082 41.667 25.71 3.46 36.73 4.00 R
4155 4239 7.321153 GTCTAGCGGAGGCAAGATAATAAATA 58.679 38.462 0.00 0.00 43.41 1.40 R
4551 4674 1.308047 TGGCAACACACAGTCATCAC 58.692 50.000 0.00 0.00 46.17 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.652057 AGCAACTACCATACATGCCTT 57.348 42.857 0.00 0.00 37.73 4.35
22 23 4.771114 AGCAACTACCATACATGCCTTA 57.229 40.909 0.00 0.00 37.73 2.69
23 24 5.110814 AGCAACTACCATACATGCCTTAA 57.889 39.130 0.00 0.00 37.73 1.85
24 25 5.505780 AGCAACTACCATACATGCCTTAAA 58.494 37.500 0.00 0.00 37.73 1.52
25 26 6.129179 AGCAACTACCATACATGCCTTAAAT 58.871 36.000 0.00 0.00 37.73 1.40
26 27 7.287061 AGCAACTACCATACATGCCTTAAATA 58.713 34.615 0.00 0.00 37.73 1.40
27 28 7.445402 AGCAACTACCATACATGCCTTAAATAG 59.555 37.037 0.00 0.00 37.73 1.73
28 29 7.228706 GCAACTACCATACATGCCTTAAATAGT 59.771 37.037 0.00 0.00 0.00 2.12
29 30 8.774586 CAACTACCATACATGCCTTAAATAGTC 58.225 37.037 0.00 0.00 0.00 2.59
30 31 8.029782 ACTACCATACATGCCTTAAATAGTCA 57.970 34.615 0.00 0.00 0.00 3.41
31 32 8.660435 ACTACCATACATGCCTTAAATAGTCAT 58.340 33.333 0.00 0.00 0.00 3.06
32 33 7.986085 ACCATACATGCCTTAAATAGTCATC 57.014 36.000 0.00 0.00 0.00 2.92
33 34 7.517320 ACCATACATGCCTTAAATAGTCATCA 58.483 34.615 0.00 0.00 0.00 3.07
34 35 8.166061 ACCATACATGCCTTAAATAGTCATCAT 58.834 33.333 0.00 0.00 0.00 2.45
35 36 9.671279 CCATACATGCCTTAAATAGTCATCATA 57.329 33.333 0.00 0.00 0.00 2.15
39 40 9.797642 ACATGCCTTAAATAGTCATCATATTGA 57.202 29.630 0.00 0.00 0.00 2.57
41 42 8.853077 TGCCTTAAATAGTCATCATATTGAGG 57.147 34.615 0.00 0.00 33.77 3.86
42 43 7.391554 TGCCTTAAATAGTCATCATATTGAGGC 59.608 37.037 17.72 17.72 43.96 4.70
43 44 7.148171 GCCTTAAATAGTCATCATATTGAGGCC 60.148 40.741 15.57 0.00 41.39 5.19
44 45 7.065085 CCTTAAATAGTCATCATATTGAGGCCG 59.935 40.741 0.00 0.00 0.00 6.13
45 46 5.489792 AATAGTCATCATATTGAGGCCGT 57.510 39.130 0.00 0.00 0.00 5.68
46 47 3.393089 AGTCATCATATTGAGGCCGTC 57.607 47.619 0.00 0.00 0.00 4.79
47 48 2.061773 GTCATCATATTGAGGCCGTCG 58.938 52.381 0.00 0.00 0.00 5.12
48 49 0.792640 CATCATATTGAGGCCGTCGC 59.207 55.000 0.00 0.00 0.00 5.19
49 50 0.392706 ATCATATTGAGGCCGTCGCA 59.607 50.000 0.00 0.00 36.38 5.10
50 51 0.529773 TCATATTGAGGCCGTCGCAC 60.530 55.000 0.00 0.00 36.38 5.34
51 52 1.591594 ATATTGAGGCCGTCGCACG 60.592 57.895 0.00 2.27 42.11 5.34
52 53 2.292794 ATATTGAGGCCGTCGCACGT 62.293 55.000 0.00 0.00 40.58 4.49
53 54 2.877360 TATTGAGGCCGTCGCACGTC 62.877 60.000 0.00 0.00 40.58 4.34
65 66 4.829518 CACGTCCGCGCGAGATGA 62.830 66.667 32.58 21.01 42.83 2.92
66 67 4.111016 ACGTCCGCGCGAGATGAA 62.111 61.111 32.58 12.42 42.83 2.57
67 68 3.607987 CGTCCGCGCGAGATGAAC 61.608 66.667 34.63 16.94 0.00 3.18
68 69 3.255379 GTCCGCGCGAGATGAACC 61.255 66.667 34.63 10.45 0.00 3.62
69 70 4.847516 TCCGCGCGAGATGAACCG 62.848 66.667 34.63 11.36 0.00 4.44
72 73 2.103538 GCGCGAGATGAACCGGTA 59.896 61.111 12.10 0.00 0.00 4.02
73 74 1.299926 GCGCGAGATGAACCGGTAT 60.300 57.895 12.10 0.00 0.00 2.73
74 75 0.874607 GCGCGAGATGAACCGGTATT 60.875 55.000 12.10 0.00 0.00 1.89
75 76 1.601162 GCGCGAGATGAACCGGTATTA 60.601 52.381 12.10 0.00 0.00 0.98
76 77 2.925306 GCGCGAGATGAACCGGTATTAT 60.925 50.000 12.10 2.06 0.00 1.28
77 78 2.915463 CGCGAGATGAACCGGTATTATC 59.085 50.000 8.00 12.39 0.00 1.75
78 79 2.915463 GCGAGATGAACCGGTATTATCG 59.085 50.000 8.00 15.23 0.00 2.92
79 80 2.915463 CGAGATGAACCGGTATTATCGC 59.085 50.000 8.00 12.83 0.00 4.58
80 81 3.366070 CGAGATGAACCGGTATTATCGCT 60.366 47.826 8.00 3.05 0.00 4.93
81 82 4.557205 GAGATGAACCGGTATTATCGCTT 58.443 43.478 8.00 0.00 0.00 4.68
82 83 4.557205 AGATGAACCGGTATTATCGCTTC 58.443 43.478 8.00 0.00 0.00 3.86
83 84 3.102052 TGAACCGGTATTATCGCTTCC 57.898 47.619 8.00 0.00 0.00 3.46
84 85 2.224113 TGAACCGGTATTATCGCTTCCC 60.224 50.000 8.00 0.00 0.00 3.97
85 86 0.683412 ACCGGTATTATCGCTTCCCC 59.317 55.000 4.49 0.00 0.00 4.81
86 87 0.036671 CCGGTATTATCGCTTCCCCC 60.037 60.000 0.00 0.00 0.00 5.40
107 108 2.203029 GGGTCTCCCCGATTTCGC 60.203 66.667 0.00 0.00 42.41 4.70
108 109 2.203029 GGTCTCCCCGATTTCGCC 60.203 66.667 0.00 0.00 38.18 5.54
109 110 2.582436 GTCTCCCCGATTTCGCCA 59.418 61.111 0.00 0.00 38.18 5.69
110 111 1.814169 GTCTCCCCGATTTCGCCAC 60.814 63.158 0.00 0.00 38.18 5.01
111 112 2.513897 CTCCCCGATTTCGCCACC 60.514 66.667 0.00 0.00 38.18 4.61
112 113 3.006728 TCCCCGATTTCGCCACCT 61.007 61.111 0.00 0.00 38.18 4.00
113 114 2.045340 CCCCGATTTCGCCACCTT 60.045 61.111 0.00 0.00 38.18 3.50
114 115 2.112815 CCCCGATTTCGCCACCTTC 61.113 63.158 0.00 0.00 38.18 3.46
115 116 1.376683 CCCGATTTCGCCACCTTCA 60.377 57.895 0.00 0.00 38.18 3.02
116 117 0.958382 CCCGATTTCGCCACCTTCAA 60.958 55.000 0.00 0.00 38.18 2.69
117 118 0.168128 CCGATTTCGCCACCTTCAAC 59.832 55.000 0.00 0.00 38.18 3.18
118 119 0.168128 CGATTTCGCCACCTTCAACC 59.832 55.000 0.00 0.00 0.00 3.77
119 120 0.526211 GATTTCGCCACCTTCAACCC 59.474 55.000 0.00 0.00 0.00 4.11
120 121 0.178975 ATTTCGCCACCTTCAACCCA 60.179 50.000 0.00 0.00 0.00 4.51
121 122 1.104577 TTTCGCCACCTTCAACCCAC 61.105 55.000 0.00 0.00 0.00 4.61
122 123 2.203280 CGCCACCTTCAACCCACA 60.203 61.111 0.00 0.00 0.00 4.17
123 124 2.260869 CGCCACCTTCAACCCACAG 61.261 63.158 0.00 0.00 0.00 3.66
124 125 2.564721 GCCACCTTCAACCCACAGC 61.565 63.158 0.00 0.00 0.00 4.40
125 126 1.152777 CCACCTTCAACCCACAGCA 60.153 57.895 0.00 0.00 0.00 4.41
126 127 1.174712 CCACCTTCAACCCACAGCAG 61.175 60.000 0.00 0.00 0.00 4.24
127 128 0.179020 CACCTTCAACCCACAGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
128 129 0.773644 ACCTTCAACCCACAGCAGAT 59.226 50.000 0.00 0.00 0.00 2.90
129 130 1.985159 ACCTTCAACCCACAGCAGATA 59.015 47.619 0.00 0.00 0.00 1.98
130 131 2.290323 ACCTTCAACCCACAGCAGATAC 60.290 50.000 0.00 0.00 0.00 2.24
131 132 2.359900 CTTCAACCCACAGCAGATACC 58.640 52.381 0.00 0.00 0.00 2.73
132 133 0.249120 TCAACCCACAGCAGATACCG 59.751 55.000 0.00 0.00 0.00 4.02
133 134 1.078426 AACCCACAGCAGATACCGC 60.078 57.895 0.00 0.00 0.00 5.68
134 135 1.553690 AACCCACAGCAGATACCGCT 61.554 55.000 0.00 0.00 41.47 5.52
135 136 1.227380 CCCACAGCAGATACCGCTC 60.227 63.158 0.00 0.00 37.72 5.03
136 137 1.517361 CCACAGCAGATACCGCTCA 59.483 57.895 0.00 0.00 37.72 4.26
137 138 0.108186 CCACAGCAGATACCGCTCAA 60.108 55.000 0.00 0.00 37.72 3.02
138 139 1.002366 CACAGCAGATACCGCTCAAC 58.998 55.000 0.00 0.00 37.72 3.18
139 140 0.898320 ACAGCAGATACCGCTCAACT 59.102 50.000 0.00 0.00 37.72 3.16
140 141 2.100197 ACAGCAGATACCGCTCAACTA 58.900 47.619 0.00 0.00 37.72 2.24
141 142 2.159226 ACAGCAGATACCGCTCAACTAC 60.159 50.000 0.00 0.00 37.72 2.73
142 143 1.065701 AGCAGATACCGCTCAACTACG 59.934 52.381 0.00 0.00 33.35 3.51
143 144 1.478137 CAGATACCGCTCAACTACGC 58.522 55.000 0.00 0.00 0.00 4.42
144 145 1.100510 AGATACCGCTCAACTACGCA 58.899 50.000 0.00 0.00 0.00 5.24
145 146 1.197910 GATACCGCTCAACTACGCAC 58.802 55.000 0.00 0.00 0.00 5.34
146 147 0.528924 ATACCGCTCAACTACGCACA 59.471 50.000 0.00 0.00 0.00 4.57
147 148 0.314618 TACCGCTCAACTACGCACAA 59.685 50.000 0.00 0.00 0.00 3.33
148 149 1.219522 ACCGCTCAACTACGCACAAC 61.220 55.000 0.00 0.00 0.00 3.32
149 150 1.491563 CGCTCAACTACGCACAACC 59.508 57.895 0.00 0.00 0.00 3.77
150 151 1.491563 GCTCAACTACGCACAACCG 59.508 57.895 0.00 0.00 0.00 4.44
151 152 1.491563 CTCAACTACGCACAACCGC 59.508 57.895 0.00 0.00 0.00 5.68
152 153 1.897398 CTCAACTACGCACAACCGCC 61.897 60.000 0.00 0.00 0.00 6.13
153 154 2.109387 AACTACGCACAACCGCCA 59.891 55.556 0.00 0.00 0.00 5.69
154 155 2.248835 AACTACGCACAACCGCCAC 61.249 57.895 0.00 0.00 0.00 5.01
155 156 2.663520 CTACGCACAACCGCCACA 60.664 61.111 0.00 0.00 0.00 4.17
156 157 2.950172 CTACGCACAACCGCCACAC 61.950 63.158 0.00 0.00 0.00 3.82
157 158 3.735037 TACGCACAACCGCCACACA 62.735 57.895 0.00 0.00 0.00 3.72
158 159 4.605967 CGCACAACCGCCACACAC 62.606 66.667 0.00 0.00 0.00 3.82
159 160 4.264638 GCACAACCGCCACACACC 62.265 66.667 0.00 0.00 0.00 4.16
160 161 3.591835 CACAACCGCCACACACCC 61.592 66.667 0.00 0.00 0.00 4.61
161 162 4.887190 ACAACCGCCACACACCCC 62.887 66.667 0.00 0.00 0.00 4.95
162 163 4.579384 CAACCGCCACACACCCCT 62.579 66.667 0.00 0.00 0.00 4.79
163 164 4.265056 AACCGCCACACACCCCTC 62.265 66.667 0.00 0.00 0.00 4.30
181 182 3.916184 CCCCCGGCATAACCCTAT 58.084 61.111 0.00 0.00 33.26 2.57
182 183 2.160646 CCCCCGGCATAACCCTATT 58.839 57.895 0.00 0.00 33.26 1.73
183 184 0.251165 CCCCCGGCATAACCCTATTG 60.251 60.000 0.00 0.00 33.26 1.90
184 185 0.893727 CCCCGGCATAACCCTATTGC 60.894 60.000 0.00 0.00 33.26 3.56
185 186 0.179004 CCCGGCATAACCCTATTGCA 60.179 55.000 0.00 0.00 33.26 4.08
186 187 0.951558 CCGGCATAACCCTATTGCAC 59.048 55.000 0.00 0.00 33.26 4.57
187 188 0.586319 CGGCATAACCCTATTGCACG 59.414 55.000 0.00 0.00 33.26 5.34
188 189 1.675552 GGCATAACCCTATTGCACGT 58.324 50.000 0.00 0.00 0.00 4.49
189 190 1.333619 GGCATAACCCTATTGCACGTG 59.666 52.381 12.28 12.28 0.00 4.49
190 191 2.285083 GCATAACCCTATTGCACGTGA 58.715 47.619 22.23 0.00 0.00 4.35
191 192 2.287915 GCATAACCCTATTGCACGTGAG 59.712 50.000 22.23 7.43 0.00 3.51
203 204 3.564455 ACGTGAGTCGGTTCAAGTC 57.436 52.632 0.00 0.00 44.19 3.01
204 205 0.031721 ACGTGAGTCGGTTCAAGTCC 59.968 55.000 0.00 0.00 44.19 3.85
205 206 0.666577 CGTGAGTCGGTTCAAGTCCC 60.667 60.000 0.00 0.00 35.71 4.46
206 207 0.320508 GTGAGTCGGTTCAAGTCCCC 60.321 60.000 0.00 0.00 0.00 4.81
207 208 1.295746 GAGTCGGTTCAAGTCCCCC 59.704 63.158 0.00 0.00 0.00 5.40
208 209 2.047560 GTCGGTTCAAGTCCCCCG 60.048 66.667 0.00 0.00 41.75 5.73
209 210 2.524887 TCGGTTCAAGTCCCCCGT 60.525 61.111 0.00 0.00 41.17 5.28
210 211 2.358247 CGGTTCAAGTCCCCCGTG 60.358 66.667 0.00 0.00 35.78 4.94
211 212 2.033602 GGTTCAAGTCCCCCGTGG 59.966 66.667 0.00 0.00 0.00 4.94
226 227 4.028490 TGGGTCCCACCATGTCGC 62.028 66.667 6.47 0.00 41.02 5.19
227 228 4.796495 GGGTCCCACCATGTCGCC 62.796 72.222 1.78 0.00 41.02 5.54
228 229 4.796495 GGTCCCACCATGTCGCCC 62.796 72.222 0.00 0.00 38.42 6.13
229 230 4.796495 GTCCCACCATGTCGCCCC 62.796 72.222 0.00 0.00 0.00 5.80
245 246 3.312404 CCCCCGAAGCTGTATCATG 57.688 57.895 0.00 0.00 0.00 3.07
251 252 1.783711 CGAAGCTGTATCATGACTCGC 59.216 52.381 0.00 0.00 0.00 5.03
256 257 2.283617 GCTGTATCATGACTCGCAACAG 59.716 50.000 0.00 6.66 35.63 3.16
285 286 8.318412 TCAACAGATGCCTTAATAAGTAGTCAA 58.682 33.333 0.00 0.00 0.00 3.18
292 293 6.982141 TGCCTTAATAAGTAGTCAACATACCG 59.018 38.462 0.00 0.00 0.00 4.02
296 297 3.521947 AAGTAGTCAACATACCGAGGC 57.478 47.619 0.00 0.00 0.00 4.70
297 298 2.736347 AGTAGTCAACATACCGAGGCT 58.264 47.619 0.00 0.00 0.00 4.58
299 300 0.108138 AGTCAACATACCGAGGCTGC 60.108 55.000 0.00 0.00 0.00 5.25
301 302 2.173669 CAACATACCGAGGCTGCCG 61.174 63.158 13.96 1.76 0.00 5.69
308 309 4.827087 CGAGGCTGCCGCACATCT 62.827 66.667 22.18 0.00 38.10 2.90
359 367 3.979313 CCCCCATCCTAAGGTCTCT 57.021 57.895 0.00 0.00 0.00 3.10
362 376 1.062121 CCCCATCCTAAGGTCTCTCCA 60.062 57.143 0.00 0.00 39.02 3.86
386 400 1.803286 CGCGCGAAAACCAAAACACC 61.803 55.000 28.94 0.00 0.00 4.16
390 404 2.722116 CGCGAAAACCAAAACACCATAC 59.278 45.455 0.00 0.00 0.00 2.39
392 406 3.487942 GCGAAAACCAAAACACCATACAC 59.512 43.478 0.00 0.00 0.00 2.90
393 407 4.673441 CGAAAACCAAAACACCATACACA 58.327 39.130 0.00 0.00 0.00 3.72
396 410 5.407407 AAACCAAAACACCATACACAACA 57.593 34.783 0.00 0.00 0.00 3.33
397 411 5.606348 AACCAAAACACCATACACAACAT 57.394 34.783 0.00 0.00 0.00 2.71
398 412 4.942852 ACCAAAACACCATACACAACATG 58.057 39.130 0.00 0.00 0.00 3.21
399 413 4.646945 ACCAAAACACCATACACAACATGA 59.353 37.500 0.00 0.00 0.00 3.07
400 414 5.127845 ACCAAAACACCATACACAACATGAA 59.872 36.000 0.00 0.00 0.00 2.57
401 415 6.045318 CCAAAACACCATACACAACATGAAA 58.955 36.000 0.00 0.00 0.00 2.69
402 416 6.200665 CCAAAACACCATACACAACATGAAAG 59.799 38.462 0.00 0.00 0.00 2.62
403 417 6.707440 AAACACCATACACAACATGAAAGA 57.293 33.333 0.00 0.00 0.00 2.52
417 431 9.050601 ACAACATGAAAGAAAAAGTGACAAAAA 57.949 25.926 0.00 0.00 0.00 1.94
418 432 9.316859 CAACATGAAAGAAAAAGTGACAAAAAC 57.683 29.630 0.00 0.00 0.00 2.43
419 433 8.600449 ACATGAAAGAAAAAGTGACAAAAACA 57.400 26.923 0.00 0.00 0.00 2.83
433 448 3.258228 CAAAAACACCACACAAACTCCC 58.742 45.455 0.00 0.00 0.00 4.30
447 462 3.728385 AACTCCCCAAATTCTCCTCAG 57.272 47.619 0.00 0.00 0.00 3.35
516 531 0.252103 TACTTTGCCCTCGTCCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
565 591 1.066908 TGAAAAACAAAGGCAGCGAGG 59.933 47.619 0.00 0.00 0.00 4.63
595 625 1.754226 AGCGAGAGAGAGGGCTAAAAG 59.246 52.381 0.00 0.00 33.19 2.27
1357 1393 3.062639 CCTAAGCGTGCTGTTGTAGATTG 59.937 47.826 0.00 0.00 0.00 2.67
1364 1400 4.629634 CGTGCTGTTGTAGATTGGATTACA 59.370 41.667 0.00 0.00 0.00 2.41
1365 1401 5.294306 CGTGCTGTTGTAGATTGGATTACAT 59.706 40.000 0.00 0.00 30.53 2.29
1444 1480 1.137513 GCTGCTAAAACGTGACGACT 58.862 50.000 13.70 0.00 0.00 4.18
1445 1481 2.030540 AGCTGCTAAAACGTGACGACTA 60.031 45.455 13.70 0.00 0.00 2.59
1446 1482 2.090195 GCTGCTAAAACGTGACGACTAC 59.910 50.000 13.70 0.00 0.00 2.73
1447 1483 3.302555 CTGCTAAAACGTGACGACTACA 58.697 45.455 13.70 0.99 0.00 2.74
1455 1491 6.859715 AAACGTGACGACTACATACATAAC 57.140 37.500 13.70 0.00 0.00 1.89
1462 1498 6.309494 TGACGACTACATACATAACAAAGTGC 59.691 38.462 0.00 0.00 0.00 4.40
1521 1557 5.241949 ACATAGGTCTATTCAGATGGTCGAC 59.758 44.000 7.13 7.13 32.09 4.20
1540 1576 1.535462 ACGCGTCATTTTCCAAAGGAG 59.465 47.619 5.58 0.00 31.21 3.69
1553 1589 3.264450 TCCAAAGGAGAGTGAAGGATTCC 59.736 47.826 0.00 0.00 46.93 3.01
1586 1622 1.261619 CGAGGCCGCATTTCATAGTTC 59.738 52.381 7.44 0.00 0.00 3.01
1596 1632 4.333926 GCATTTCATAGTTCACTCCAGACC 59.666 45.833 0.00 0.00 0.00 3.85
1599 1635 3.427573 TCATAGTTCACTCCAGACCGAA 58.572 45.455 0.00 0.00 0.00 4.30
1678 1714 0.607217 TTGTGGATGGTGAGCAGCAG 60.607 55.000 1.35 0.00 42.52 4.24
1762 1811 3.629398 CCCCAACTGATGATTGCTAGAAC 59.371 47.826 0.00 0.00 0.00 3.01
1789 1838 7.862873 GTGTTTCCTAGAAGAAATTTGTCTTGG 59.137 37.037 16.54 16.54 37.98 3.61
1843 1895 8.636213 TGGTTTAGTCTATATGTAAGCACTACC 58.364 37.037 0.00 0.00 0.00 3.18
1849 1901 7.785506 AGTCTATATGTAAGCACTACCTTCCTT 59.214 37.037 0.00 0.00 0.00 3.36
1878 1930 4.539870 AGCGAATGAAATTGACACAGTTG 58.460 39.130 0.00 0.00 36.07 3.16
1890 1942 3.136443 TGACACAGTTGGTCTCTTTGGAT 59.864 43.478 0.00 0.00 36.26 3.41
1907 1959 4.439305 TGGATCTTTTGATTTTCCGCTG 57.561 40.909 0.00 0.00 39.67 5.18
1912 1964 5.452078 TCTTTTGATTTTCCGCTGATTGT 57.548 34.783 0.00 0.00 0.00 2.71
1919 1971 0.874390 TTCCGCTGATTGTGCTTGAC 59.126 50.000 0.00 0.00 0.00 3.18
1963 2016 4.623932 TCAGGTACTCTGATTTGCTTGT 57.376 40.909 9.25 0.00 46.71 3.16
1971 2024 5.005740 ACTCTGATTTGCTTGTAATCTGCA 58.994 37.500 0.00 0.00 34.00 4.41
1976 2029 7.499895 TCTGATTTGCTTGTAATCTGCATATCA 59.500 33.333 15.37 15.37 45.48 2.15
2004 2057 1.093972 TGTATCTGTGCCAATTGCCG 58.906 50.000 0.00 0.00 40.16 5.69
2032 2085 7.150783 ACAAATCATTAGTTTCTCTGAAGGC 57.849 36.000 0.00 0.00 0.00 4.35
2047 2100 8.306313 TCTCTGAAGGCTTAAATCATGTAGTA 57.694 34.615 0.00 0.00 0.00 1.82
2085 2139 2.035704 TGTCTGCGCAAATGGATTTTGT 59.964 40.909 13.05 0.00 45.41 2.83
2096 2153 6.347644 GCAAATGGATTTTGTTTTCCAGTAGC 60.348 38.462 0.00 0.00 44.87 3.58
2104 2161 5.499004 TTGTTTTCCAGTAGCTAGACCAT 57.501 39.130 0.00 0.00 0.00 3.55
2116 2173 8.184192 CAGTAGCTAGACCATTTTTGGTTATTG 58.816 37.037 0.00 0.00 43.24 1.90
2177 2242 1.168407 TGTTCTGCTGCAGACAAGCC 61.168 55.000 30.47 16.20 40.46 4.35
2224 2289 4.759183 GCCATGGATTCATCTCCTTACTTC 59.241 45.833 18.40 0.00 36.20 3.01
2308 2373 1.467342 GTGTTAAATGGCGGTGACTCC 59.533 52.381 0.00 0.00 0.00 3.85
2394 2459 3.849563 TGCAAGTACCAGGTAACAACT 57.150 42.857 0.00 0.00 41.41 3.16
2494 2560 6.647229 TGTCTAGCAGATTCATTTGTCTCAT 58.353 36.000 0.00 0.00 0.00 2.90
2533 2599 5.083533 TGTTTTGTTTGTGCTTGAGGATT 57.916 34.783 0.00 0.00 0.00 3.01
2635 2717 9.781633 TTGCTCTTACCTAAAATGTTAGTGTAA 57.218 29.630 12.45 12.45 35.82 2.41
2731 2813 6.874134 TGTTTCTACTACTTTTCCAGAGATGC 59.126 38.462 0.00 0.00 0.00 3.91
2738 2820 7.680730 ACTACTTTTCCAGAGATGCTTAAAGA 58.319 34.615 0.00 0.00 0.00 2.52
2765 2847 6.976636 ATTCTACTGCTTTGCTAAAGTCTC 57.023 37.500 9.40 0.00 40.64 3.36
2766 2848 5.730296 TCTACTGCTTTGCTAAAGTCTCT 57.270 39.130 9.40 0.00 40.64 3.10
2768 2850 3.406764 ACTGCTTTGCTAAAGTCTCTGG 58.593 45.455 9.40 0.00 40.64 3.86
2769 2851 3.071602 ACTGCTTTGCTAAAGTCTCTGGA 59.928 43.478 9.40 0.00 40.64 3.86
2770 2852 4.067896 CTGCTTTGCTAAAGTCTCTGGAA 58.932 43.478 9.40 0.00 40.64 3.53
2771 2853 4.460263 TGCTTTGCTAAAGTCTCTGGAAA 58.540 39.130 9.40 0.00 40.64 3.13
2772 2854 4.887071 TGCTTTGCTAAAGTCTCTGGAAAA 59.113 37.500 9.40 0.00 40.64 2.29
2773 2855 5.009010 TGCTTTGCTAAAGTCTCTGGAAAAG 59.991 40.000 9.40 0.00 40.64 2.27
2774 2856 5.009110 GCTTTGCTAAAGTCTCTGGAAAAGT 59.991 40.000 9.40 0.00 40.64 2.66
2775 2857 6.204882 GCTTTGCTAAAGTCTCTGGAAAAGTA 59.795 38.462 9.40 0.00 40.64 2.24
2776 2858 7.572168 GCTTTGCTAAAGTCTCTGGAAAAGTAG 60.572 40.741 9.40 0.00 40.64 2.57
2777 2859 5.238583 TGCTAAAGTCTCTGGAAAAGTAGC 58.761 41.667 0.00 0.00 33.64 3.58
2778 2860 5.012148 TGCTAAAGTCTCTGGAAAAGTAGCT 59.988 40.000 0.00 0.00 34.06 3.32
2779 2861 5.935206 GCTAAAGTCTCTGGAAAAGTAGCTT 59.065 40.000 0.00 0.00 0.00 3.74
2780 2862 6.128418 GCTAAAGTCTCTGGAAAAGTAGCTTG 60.128 42.308 0.00 0.00 0.00 4.01
2781 2863 4.278975 AGTCTCTGGAAAAGTAGCTTGG 57.721 45.455 0.00 0.00 0.00 3.61
2782 2864 2.744741 GTCTCTGGAAAAGTAGCTTGGC 59.255 50.000 0.00 0.00 0.00 4.52
2783 2865 2.371841 TCTCTGGAAAAGTAGCTTGGCA 59.628 45.455 0.00 0.00 0.00 4.92
2784 2866 3.149196 CTCTGGAAAAGTAGCTTGGCAA 58.851 45.455 0.00 0.00 0.00 4.52
2785 2867 3.561143 TCTGGAAAAGTAGCTTGGCAAA 58.439 40.909 0.00 0.00 0.00 3.68
2786 2868 3.317993 TCTGGAAAAGTAGCTTGGCAAAC 59.682 43.478 0.00 0.00 0.00 2.93
2787 2869 3.027412 TGGAAAAGTAGCTTGGCAAACA 58.973 40.909 0.00 0.00 0.00 2.83
2788 2870 3.068024 TGGAAAAGTAGCTTGGCAAACAG 59.932 43.478 0.00 0.00 0.00 3.16
2789 2871 3.068165 GGAAAAGTAGCTTGGCAAACAGT 59.932 43.478 0.00 0.00 0.00 3.55
2790 2872 4.277423 GGAAAAGTAGCTTGGCAAACAGTA 59.723 41.667 0.00 0.00 0.00 2.74
2791 2873 5.048013 GGAAAAGTAGCTTGGCAAACAGTAT 60.048 40.000 0.00 0.00 0.00 2.12
2792 2874 6.405278 AAAAGTAGCTTGGCAAACAGTATT 57.595 33.333 0.00 0.00 0.00 1.89
2793 2875 5.629079 AAGTAGCTTGGCAAACAGTATTC 57.371 39.130 0.00 0.00 0.00 1.75
2794 2876 4.911390 AGTAGCTTGGCAAACAGTATTCT 58.089 39.130 0.00 0.00 0.00 2.40
2795 2877 6.049955 AGTAGCTTGGCAAACAGTATTCTA 57.950 37.500 0.00 0.00 0.00 2.10
2931 3013 2.675658 AGGGTTGGTGTGCAAGTTAT 57.324 45.000 0.00 0.00 0.00 1.89
2997 3079 8.771766 ACAAAAGTAGACGAATAAGAAAAGTCC 58.228 33.333 0.00 0.00 32.70 3.85
3022 3104 9.099454 CCTGAGAATAGGTATGAAACAAAGTAC 57.901 37.037 0.00 0.00 32.99 2.73
3031 3113 7.603024 AGGTATGAAACAAAGTACTGCTAGTTC 59.397 37.037 0.00 0.00 0.00 3.01
3068 3150 6.636454 TGTTTGGGAGATACCTTTGATAGT 57.364 37.500 0.00 0.00 38.98 2.12
3078 3160 9.331282 GAGATACCTTTGATAGTGCATAACTTT 57.669 33.333 0.00 0.00 40.56 2.66
3268 3350 4.513777 CGGGATCCTCCGTATGGA 57.486 61.111 12.58 3.02 44.60 3.41
3294 3376 5.937111 AGAGCCTTTAACAGACAAGGTAAA 58.063 37.500 0.12 0.00 41.63 2.01
3307 3389 7.979537 ACAGACAAGGTAAATTTTGTTTCTTCC 59.020 33.333 0.00 0.00 37.63 3.46
3358 3440 8.144478 TCCAGTGTATAGAATCTTATTCTGCAC 58.856 37.037 11.51 14.77 32.55 4.57
3359 3441 7.928167 CCAGTGTATAGAATCTTATTCTGCACA 59.072 37.037 21.55 16.93 33.63 4.57
3394 3476 4.081142 TCAGTTCTTGCGGATAGATTTCCA 60.081 41.667 0.00 0.00 35.34 3.53
3398 3480 3.118261 TCTTGCGGATAGATTTCCAGCTT 60.118 43.478 0.00 0.00 36.72 3.74
3421 3503 6.545504 TTAAAGACATTCAGAAGCTGTGAC 57.454 37.500 0.00 0.00 32.61 3.67
3484 3566 5.646606 TCAAACACTTTTGAGCCTGTTTAC 58.353 37.500 0.00 0.00 45.08 2.01
3487 3569 3.560068 ACACTTTTGAGCCTGTTTACTCG 59.440 43.478 0.00 0.00 35.61 4.18
3515 3597 7.721842 TCATTTTTCCAGTGGTAAGATGTGTTA 59.278 33.333 23.07 8.64 30.58 2.41
3546 3628 3.221771 TGTTGGCTGCCATGTATTATCC 58.778 45.455 24.03 2.97 31.53 2.59
3658 3742 8.449423 TCTTATTACCTGCCATGTATTATCCT 57.551 34.615 0.00 0.00 0.00 3.24
3660 3744 3.685139 ACCTGCCATGTATTATCCTCG 57.315 47.619 0.00 0.00 0.00 4.63
3661 3745 2.972713 ACCTGCCATGTATTATCCTCGT 59.027 45.455 0.00 0.00 0.00 4.18
3662 3746 4.157246 ACCTGCCATGTATTATCCTCGTA 58.843 43.478 0.00 0.00 0.00 3.43
3663 3747 4.777896 ACCTGCCATGTATTATCCTCGTAT 59.222 41.667 0.00 0.00 0.00 3.06
3664 3748 5.248477 ACCTGCCATGTATTATCCTCGTATT 59.752 40.000 0.00 0.00 0.00 1.89
3665 3749 6.439375 ACCTGCCATGTATTATCCTCGTATTA 59.561 38.462 0.00 0.00 0.00 0.98
3666 3750 6.757010 CCTGCCATGTATTATCCTCGTATTAC 59.243 42.308 0.00 0.00 0.00 1.89
3667 3751 6.636705 TGCCATGTATTATCCTCGTATTACC 58.363 40.000 0.00 0.00 0.00 2.85
3668 3752 6.439375 TGCCATGTATTATCCTCGTATTACCT 59.561 38.462 0.00 0.00 0.00 3.08
3669 3753 6.757010 GCCATGTATTATCCTCGTATTACCTG 59.243 42.308 0.00 0.00 0.00 4.00
3670 3754 6.757010 CCATGTATTATCCTCGTATTACCTGC 59.243 42.308 0.00 0.00 0.00 4.85
3671 3755 6.276832 TGTATTATCCTCGTATTACCTGCC 57.723 41.667 0.00 0.00 0.00 4.85
3672 3756 5.776208 TGTATTATCCTCGTATTACCTGCCA 59.224 40.000 0.00 0.00 0.00 4.92
3673 3757 6.439375 TGTATTATCCTCGTATTACCTGCCAT 59.561 38.462 0.00 0.00 0.00 4.40
3674 3758 3.685139 ATCCTCGTATTACCTGCCATG 57.315 47.619 0.00 0.00 0.00 3.66
3675 3759 2.394632 TCCTCGTATTACCTGCCATGT 58.605 47.619 0.00 0.00 0.00 3.21
3676 3760 3.568443 TCCTCGTATTACCTGCCATGTA 58.432 45.455 0.00 0.00 0.00 2.29
3677 3761 4.157246 TCCTCGTATTACCTGCCATGTAT 58.843 43.478 0.00 0.00 0.00 2.29
3678 3762 4.591498 TCCTCGTATTACCTGCCATGTATT 59.409 41.667 0.00 0.00 0.00 1.89
3679 3763 5.776208 TCCTCGTATTACCTGCCATGTATTA 59.224 40.000 0.00 0.00 0.00 0.98
3680 3764 6.439375 TCCTCGTATTACCTGCCATGTATTAT 59.561 38.462 0.00 0.00 0.00 1.28
3681 3765 6.757010 CCTCGTATTACCTGCCATGTATTATC 59.243 42.308 0.00 0.00 0.00 1.75
3682 3766 6.636705 TCGTATTACCTGCCATGTATTATCC 58.363 40.000 0.00 0.00 0.00 2.59
3683 3767 6.439375 TCGTATTACCTGCCATGTATTATCCT 59.561 38.462 0.00 0.00 0.00 3.24
3684 3768 6.757010 CGTATTACCTGCCATGTATTATCCTC 59.243 42.308 0.00 0.00 0.00 3.71
3685 3769 6.959606 ATTACCTGCCATGTATTATCCTCT 57.040 37.500 0.00 0.00 0.00 3.69
3686 3770 6.763715 TTACCTGCCATGTATTATCCTCTT 57.236 37.500 0.00 0.00 0.00 2.85
3687 3771 7.865530 TTACCTGCCATGTATTATCCTCTTA 57.134 36.000 0.00 0.00 0.00 2.10
3718 3802 7.479352 TCTGCCATCCTCATTTTTATTTGAA 57.521 32.000 0.00 0.00 0.00 2.69
3801 3885 3.286329 AAGCATGATGCCATCACAGTA 57.714 42.857 14.72 0.00 46.52 2.74
4476 4593 0.240411 ACTTCCGGTTCTTCGTCTCG 59.760 55.000 0.00 0.00 0.00 4.04
4551 4674 9.647797 TTGTGACTGTTACTGTTAGTTATATGG 57.352 33.333 4.30 0.00 0.00 2.74
4584 4707 1.876156 GTTGCCAAGTCTGAACTCAGG 59.124 52.381 6.87 0.00 43.91 3.86
4874 5001 9.915629 TGAACATACAGTAGTTTTGTTTTTGTT 57.084 25.926 0.00 0.00 34.80 2.83
4876 5003 8.920509 ACATACAGTAGTTTTGTTTTTGTTCC 57.079 30.769 0.00 0.00 0.00 3.62
4877 5004 7.698970 ACATACAGTAGTTTTGTTTTTGTTCCG 59.301 33.333 0.00 0.00 0.00 4.30
4878 5005 4.860352 ACAGTAGTTTTGTTTTTGTTCCGC 59.140 37.500 0.00 0.00 0.00 5.54
4881 5008 6.693545 CAGTAGTTTTGTTTTTGTTCCGCATA 59.306 34.615 0.00 0.00 0.00 3.14
4882 5009 5.959652 AGTTTTGTTTTTGTTCCGCATAC 57.040 34.783 0.00 0.00 0.00 2.39
4883 5010 4.501198 AGTTTTGTTTTTGTTCCGCATACG 59.499 37.500 0.00 0.00 39.67 3.06
4884 5011 3.694535 TTGTTTTTGTTCCGCATACGT 57.305 38.095 0.00 0.00 37.70 3.57
4885 5012 2.988343 TGTTTTTGTTCCGCATACGTG 58.012 42.857 0.00 0.00 37.70 4.49
4923 5050 1.527380 GTTTTGGTCCTGGGCACGA 60.527 57.895 0.00 0.00 0.00 4.35
4929 5056 1.097547 GGTCCTGGGCACGATTGATG 61.098 60.000 0.00 0.00 0.00 3.07
4933 5060 1.407299 CCTGGGCACGATTGATGAAGA 60.407 52.381 0.00 0.00 0.00 2.87
4940 5067 5.091431 GGCACGATTGATGAAGAAAAGAAG 58.909 41.667 0.00 0.00 0.00 2.85
4941 5068 5.091431 GCACGATTGATGAAGAAAAGAAGG 58.909 41.667 0.00 0.00 0.00 3.46
4942 5069 5.335191 GCACGATTGATGAAGAAAAGAAGGT 60.335 40.000 0.00 0.00 0.00 3.50
4943 5070 6.082338 CACGATTGATGAAGAAAAGAAGGTG 58.918 40.000 0.00 0.00 0.00 4.00
4946 5073 5.772825 TTGATGAAGAAAAGAAGGTGGTG 57.227 39.130 0.00 0.00 0.00 4.17
4965 5092 4.080356 TGGTGATATGCTAGCCTGTTTCTT 60.080 41.667 13.29 0.00 0.00 2.52
4966 5093 4.884164 GGTGATATGCTAGCCTGTTTCTTT 59.116 41.667 13.29 0.00 0.00 2.52
4967 5094 5.008118 GGTGATATGCTAGCCTGTTTCTTTC 59.992 44.000 13.29 0.00 0.00 2.62
4968 5095 5.819901 GTGATATGCTAGCCTGTTTCTTTCT 59.180 40.000 13.29 0.00 0.00 2.52
4969 5096 6.317391 GTGATATGCTAGCCTGTTTCTTTCTT 59.683 38.462 13.29 0.00 0.00 2.52
4976 5103 7.334421 TGCTAGCCTGTTTCTTTCTTTATGTAG 59.666 37.037 13.29 0.00 0.00 2.74
4978 5105 9.871238 CTAGCCTGTTTCTTTCTTTATGTAGTA 57.129 33.333 0.00 0.00 0.00 1.82
5008 5135 5.491982 CACTTGGCTACAGGTAATCTTCTT 58.508 41.667 0.00 0.00 34.86 2.52
5058 5355 8.646900 GGGCATTGGGAAGTTCATAATTTAATA 58.353 33.333 5.01 0.00 0.00 0.98
5110 5408 1.381165 AACGGTGTGGTTGACTTGGC 61.381 55.000 0.00 0.00 0.00 4.52
5136 5434 1.405391 GCCACTTGTTTTGCCTTGTGT 60.405 47.619 0.00 0.00 0.00 3.72
5139 5437 4.261825 GCCACTTGTTTTGCCTTGTGTATA 60.262 41.667 0.00 0.00 0.00 1.47
5140 5438 5.737635 GCCACTTGTTTTGCCTTGTGTATAA 60.738 40.000 0.00 0.00 0.00 0.98
5141 5439 6.276847 CCACTTGTTTTGCCTTGTGTATAAA 58.723 36.000 0.00 0.00 0.00 1.40
5142 5440 6.928492 CCACTTGTTTTGCCTTGTGTATAAAT 59.072 34.615 0.00 0.00 0.00 1.40
5204 5502 5.177327 GTCCACTACGACCGAAAAATAACAA 59.823 40.000 0.00 0.00 0.00 2.83
5206 5504 6.091169 TCCACTACGACCGAAAAATAACAATC 59.909 38.462 0.00 0.00 0.00 2.67
5215 5513 5.219768 CCGAAAAATAACAATCGCGAACAAG 60.220 40.000 15.24 5.86 34.13 3.16
5230 5528 5.264060 CGAACAAGAACAAATCGCTCTTA 57.736 39.130 0.00 0.00 28.77 2.10
5235 5533 5.123979 ACAAGAACAAATCGCTCTTATTCCC 59.876 40.000 0.00 0.00 28.77 3.97
5286 5588 9.661187 CAAAAGTGCTGTAATAATCTCATGATC 57.339 33.333 0.00 0.00 31.51 2.92
5343 5645 8.780846 ATGTTGTTTATACCATTACTCGTTCA 57.219 30.769 0.00 0.00 0.00 3.18
5344 5646 8.780846 TGTTGTTTATACCATTACTCGTTCAT 57.219 30.769 0.00 0.00 0.00 2.57
5345 5647 8.661257 TGTTGTTTATACCATTACTCGTTCATG 58.339 33.333 0.00 0.00 0.00 3.07
5346 5648 8.662141 GTTGTTTATACCATTACTCGTTCATGT 58.338 33.333 0.00 0.00 0.00 3.21
5347 5649 8.415192 TGTTTATACCATTACTCGTTCATGTC 57.585 34.615 0.00 0.00 0.00 3.06
5348 5650 8.035984 TGTTTATACCATTACTCGTTCATGTCA 58.964 33.333 0.00 0.00 0.00 3.58
5349 5651 8.540492 GTTTATACCATTACTCGTTCATGTCAG 58.460 37.037 0.00 0.00 0.00 3.51
5350 5652 3.262420 ACCATTACTCGTTCATGTCAGC 58.738 45.455 0.00 0.00 0.00 4.26
5351 5653 3.055819 ACCATTACTCGTTCATGTCAGCT 60.056 43.478 0.00 0.00 0.00 4.24
5352 5654 3.308053 CCATTACTCGTTCATGTCAGCTG 59.692 47.826 7.63 7.63 0.00 4.24
5353 5655 2.654749 TACTCGTTCATGTCAGCTGG 57.345 50.000 15.13 0.00 0.00 4.85
5354 5656 0.036952 ACTCGTTCATGTCAGCTGGG 60.037 55.000 15.13 1.48 0.00 4.45
5355 5657 0.036952 CTCGTTCATGTCAGCTGGGT 60.037 55.000 15.13 0.00 0.00 4.51
5356 5658 1.204704 CTCGTTCATGTCAGCTGGGTA 59.795 52.381 15.13 0.51 0.00 3.69
5357 5659 1.831106 TCGTTCATGTCAGCTGGGTAT 59.169 47.619 15.13 3.13 0.00 2.73
5358 5660 2.159099 TCGTTCATGTCAGCTGGGTATC 60.159 50.000 15.13 0.67 0.00 2.24
5359 5661 2.565841 GTTCATGTCAGCTGGGTATCC 58.434 52.381 15.13 0.00 0.00 2.59
5360 5662 2.171448 GTTCATGTCAGCTGGGTATCCT 59.829 50.000 15.13 0.00 0.00 3.24
5361 5663 2.042464 TCATGTCAGCTGGGTATCCTC 58.958 52.381 15.13 0.00 0.00 3.71
5362 5664 1.043816 ATGTCAGCTGGGTATCCTCG 58.956 55.000 15.13 0.00 0.00 4.63
5363 5665 1.068250 GTCAGCTGGGTATCCTCGC 59.932 63.158 15.13 0.00 0.00 5.03
5364 5666 1.381191 TCAGCTGGGTATCCTCGCA 60.381 57.895 15.13 0.00 34.28 5.10
5365 5667 0.975556 TCAGCTGGGTATCCTCGCAA 60.976 55.000 15.13 0.00 34.28 4.85
5366 5668 0.811616 CAGCTGGGTATCCTCGCAAC 60.812 60.000 5.57 0.00 34.28 4.17
5367 5669 0.978146 AGCTGGGTATCCTCGCAACT 60.978 55.000 9.14 0.00 34.28 3.16
5368 5670 0.750850 GCTGGGTATCCTCGCAACTA 59.249 55.000 0.00 0.00 32.86 2.24
5369 5671 1.538419 GCTGGGTATCCTCGCAACTAC 60.538 57.143 0.00 0.00 32.86 2.73
5370 5672 1.068741 CTGGGTATCCTCGCAACTACC 59.931 57.143 0.00 0.00 34.19 3.18
5371 5673 1.342674 TGGGTATCCTCGCAACTACCT 60.343 52.381 0.00 0.00 35.12 3.08
5372 5674 1.340568 GGGTATCCTCGCAACTACCTC 59.659 57.143 0.00 0.00 35.12 3.85
5373 5675 1.340568 GGTATCCTCGCAACTACCTCC 59.659 57.143 0.00 0.00 32.57 4.30
5374 5676 1.001597 GTATCCTCGCAACTACCTCCG 60.002 57.143 0.00 0.00 0.00 4.63
5375 5677 0.683504 ATCCTCGCAACTACCTCCGT 60.684 55.000 0.00 0.00 0.00 4.69
5376 5678 0.896940 TCCTCGCAACTACCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
5377 5679 0.037605 CCTCGCAACTACCTCCGTTT 60.038 55.000 0.00 0.00 0.00 3.60
5378 5680 1.068474 CTCGCAACTACCTCCGTTTG 58.932 55.000 0.00 0.00 0.00 2.93
5379 5681 0.320073 TCGCAACTACCTCCGTTTGG 60.320 55.000 0.00 0.00 0.00 3.28
5380 5682 0.320073 CGCAACTACCTCCGTTTGGA 60.320 55.000 0.00 0.00 43.88 3.53
5381 5683 1.874739 CGCAACTACCTCCGTTTGGAA 60.875 52.381 0.00 0.00 45.87 3.53
5382 5684 2.433436 GCAACTACCTCCGTTTGGAAT 58.567 47.619 0.00 0.00 45.87 3.01
5383 5685 2.817844 GCAACTACCTCCGTTTGGAATT 59.182 45.455 0.00 0.00 45.87 2.17
5384 5686 4.004982 GCAACTACCTCCGTTTGGAATTA 58.995 43.478 0.00 0.00 45.87 1.40
5385 5687 4.142752 GCAACTACCTCCGTTTGGAATTAC 60.143 45.833 0.00 0.00 45.87 1.89
5386 5688 5.243207 CAACTACCTCCGTTTGGAATTACT 58.757 41.667 0.00 0.00 45.87 2.24
5387 5689 5.494390 ACTACCTCCGTTTGGAATTACTT 57.506 39.130 0.00 0.00 45.87 2.24
5388 5690 5.243207 ACTACCTCCGTTTGGAATTACTTG 58.757 41.667 0.00 0.00 45.87 3.16
5389 5691 4.094830 ACCTCCGTTTGGAATTACTTGT 57.905 40.909 0.00 0.00 45.87 3.16
5390 5692 4.070009 ACCTCCGTTTGGAATTACTTGTC 58.930 43.478 0.00 0.00 45.87 3.18
5391 5693 4.202430 ACCTCCGTTTGGAATTACTTGTCT 60.202 41.667 0.00 0.00 45.87 3.41
5392 5694 4.760204 CCTCCGTTTGGAATTACTTGTCTT 59.240 41.667 0.00 0.00 45.87 3.01
5393 5695 5.334879 CCTCCGTTTGGAATTACTTGTCTTG 60.335 44.000 0.00 0.00 45.87 3.02
5394 5696 5.369833 TCCGTTTGGAATTACTTGTCTTGA 58.630 37.500 0.00 0.00 42.85 3.02
5395 5697 6.001460 TCCGTTTGGAATTACTTGTCTTGAT 58.999 36.000 0.00 0.00 42.85 2.57
5396 5698 7.162761 TCCGTTTGGAATTACTTGTCTTGATA 58.837 34.615 0.00 0.00 42.85 2.15
5397 5699 7.827236 TCCGTTTGGAATTACTTGTCTTGATAT 59.173 33.333 0.00 0.00 42.85 1.63
5398 5700 9.104965 CCGTTTGGAATTACTTGTCTTGATATA 57.895 33.333 0.00 0.00 37.49 0.86
5445 5747 9.477484 ACATCTAGATACATCCATTTTTACGAC 57.523 33.333 4.54 0.00 0.00 4.34
5446 5748 9.476202 CATCTAGATACATCCATTTTTACGACA 57.524 33.333 4.54 0.00 0.00 4.35
5448 5750 9.529325 TCTAGATACATCCATTTTTACGACAAG 57.471 33.333 0.00 0.00 0.00 3.16
5449 5751 9.314321 CTAGATACATCCATTTTTACGACAAGT 57.686 33.333 0.00 0.00 0.00 3.16
5451 5753 9.661563 AGATACATCCATTTTTACGACAAGTAA 57.338 29.630 0.00 0.00 43.05 2.24
5455 5757 8.241367 ACATCCATTTTTACGACAAGTAATTCC 58.759 33.333 0.00 0.00 44.03 3.01
5456 5758 6.833839 TCCATTTTTACGACAAGTAATTCCG 58.166 36.000 0.00 0.00 44.03 4.30
5457 5759 6.649973 TCCATTTTTACGACAAGTAATTCCGA 59.350 34.615 0.00 0.00 44.03 4.55
5458 5760 7.172875 TCCATTTTTACGACAAGTAATTCCGAA 59.827 33.333 0.00 0.00 44.03 4.30
5459 5761 7.269724 CCATTTTTACGACAAGTAATTCCGAAC 59.730 37.037 0.00 0.00 44.03 3.95
5460 5762 5.499268 TTTACGACAAGTAATTCCGAACG 57.501 39.130 0.00 0.00 44.03 3.95
5461 5763 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
5462 5764 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
5463 5765 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
5464 5766 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5465 5767 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5466 5768 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5467 5769 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5468 5770 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
5469 5771 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
5470 5772 1.856629 ATTCCGAACGGAGGGAGTAA 58.143 50.000 15.34 0.34 46.06 2.24
5471 5773 1.631405 TTCCGAACGGAGGGAGTAAA 58.369 50.000 15.34 0.00 46.06 2.01
5472 5774 1.631405 TCCGAACGGAGGGAGTAAAA 58.369 50.000 12.04 0.00 39.76 1.52
5473 5775 1.547372 TCCGAACGGAGGGAGTAAAAG 59.453 52.381 12.04 0.00 39.76 2.27
5474 5776 1.547372 CCGAACGGAGGGAGTAAAAGA 59.453 52.381 7.53 0.00 37.50 2.52
5475 5777 2.028748 CCGAACGGAGGGAGTAAAAGAA 60.029 50.000 7.53 0.00 37.50 2.52
5476 5778 3.555586 CCGAACGGAGGGAGTAAAAGAAA 60.556 47.826 7.53 0.00 37.50 2.52
5477 5779 4.060205 CGAACGGAGGGAGTAAAAGAAAA 58.940 43.478 0.00 0.00 0.00 2.29
5478 5780 4.084171 CGAACGGAGGGAGTAAAAGAAAAC 60.084 45.833 0.00 0.00 0.00 2.43
5479 5781 4.701651 ACGGAGGGAGTAAAAGAAAACT 57.298 40.909 0.00 0.00 0.00 2.66
5480 5782 5.813513 ACGGAGGGAGTAAAAGAAAACTA 57.186 39.130 0.00 0.00 0.00 2.24
5481 5783 5.791666 ACGGAGGGAGTAAAAGAAAACTAG 58.208 41.667 0.00 0.00 0.00 2.57
5482 5784 5.306419 ACGGAGGGAGTAAAAGAAAACTAGT 59.694 40.000 0.00 0.00 0.00 2.57
5483 5785 5.638234 CGGAGGGAGTAAAAGAAAACTAGTG 59.362 44.000 0.00 0.00 0.00 2.74
5484 5786 6.531923 GGAGGGAGTAAAAGAAAACTAGTGT 58.468 40.000 0.00 0.00 0.00 3.55
5485 5787 7.524367 CGGAGGGAGTAAAAGAAAACTAGTGTA 60.524 40.741 0.00 0.00 0.00 2.90
5486 5788 8.152898 GGAGGGAGTAAAAGAAAACTAGTGTAA 58.847 37.037 0.00 0.00 0.00 2.41
5487 5789 9.722184 GAGGGAGTAAAAGAAAACTAGTGTAAT 57.278 33.333 0.00 0.00 0.00 1.89
5488 5790 9.722184 AGGGAGTAAAAGAAAACTAGTGTAATC 57.278 33.333 0.00 0.00 0.00 1.75
5489 5791 9.722184 GGGAGTAAAAGAAAACTAGTGTAATCT 57.278 33.333 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.771114 AAGGCATGTATGGTAGTTGCTA 57.229 40.909 0.00 0.00 33.86 3.49
1 2 3.652057 AAGGCATGTATGGTAGTTGCT 57.348 42.857 0.00 0.00 33.86 3.91
2 3 5.828299 TTTAAGGCATGTATGGTAGTTGC 57.172 39.130 0.00 0.00 0.00 4.17
3 4 8.677148 ACTATTTAAGGCATGTATGGTAGTTG 57.323 34.615 0.00 0.00 0.00 3.16
4 5 8.491134 TGACTATTTAAGGCATGTATGGTAGTT 58.509 33.333 0.00 0.00 38.78 2.24
5 6 8.029782 TGACTATTTAAGGCATGTATGGTAGT 57.970 34.615 0.00 0.00 38.78 2.73
17 18 7.148171 GGCCTCAATATGATGACTATTTAAGGC 60.148 40.741 0.00 13.13 40.35 4.35
18 19 7.065085 CGGCCTCAATATGATGACTATTTAAGG 59.935 40.741 0.00 0.00 0.00 2.69
19 20 7.604164 ACGGCCTCAATATGATGACTATTTAAG 59.396 37.037 0.00 0.00 0.00 1.85
20 21 7.450074 ACGGCCTCAATATGATGACTATTTAA 58.550 34.615 0.00 0.00 0.00 1.52
21 22 7.004555 ACGGCCTCAATATGATGACTATTTA 57.995 36.000 0.00 0.00 0.00 1.40
22 23 5.869579 ACGGCCTCAATATGATGACTATTT 58.130 37.500 0.00 0.00 0.00 1.40
23 24 5.482908 GACGGCCTCAATATGATGACTATT 58.517 41.667 0.00 0.00 0.00 1.73
24 25 4.380973 CGACGGCCTCAATATGATGACTAT 60.381 45.833 0.00 0.00 0.00 2.12
25 26 3.057526 CGACGGCCTCAATATGATGACTA 60.058 47.826 0.00 0.00 0.00 2.59
26 27 2.288457 CGACGGCCTCAATATGATGACT 60.288 50.000 0.00 0.00 0.00 3.41
27 28 2.061773 CGACGGCCTCAATATGATGAC 58.938 52.381 0.00 0.00 0.00 3.06
28 29 1.605457 GCGACGGCCTCAATATGATGA 60.605 52.381 0.00 0.00 0.00 2.92
29 30 0.792640 GCGACGGCCTCAATATGATG 59.207 55.000 0.00 0.00 0.00 3.07
30 31 0.392706 TGCGACGGCCTCAATATGAT 59.607 50.000 0.00 0.00 38.85 2.45
31 32 0.529773 GTGCGACGGCCTCAATATGA 60.530 55.000 0.00 0.00 38.85 2.15
32 33 1.821241 CGTGCGACGGCCTCAATATG 61.821 60.000 0.00 0.00 38.08 1.78
33 34 1.591594 CGTGCGACGGCCTCAATAT 60.592 57.895 0.00 0.00 38.08 1.28
34 35 2.202690 CGTGCGACGGCCTCAATA 60.203 61.111 0.00 0.00 38.08 1.90
49 50 4.111016 TTCATCTCGCGCGGACGT 62.111 61.111 31.69 11.09 42.83 4.34
50 51 3.607987 GTTCATCTCGCGCGGACG 61.608 66.667 31.69 18.43 44.07 4.79
51 52 3.255379 GGTTCATCTCGCGCGGAC 61.255 66.667 31.69 17.46 0.00 4.79
52 53 4.847516 CGGTTCATCTCGCGCGGA 62.848 66.667 31.69 25.23 0.00 5.54
54 55 3.744749 TACCGGTTCATCTCGCGCG 62.745 63.158 26.76 26.76 0.00 6.86
55 56 0.874607 AATACCGGTTCATCTCGCGC 60.875 55.000 15.04 0.00 0.00 6.86
56 57 2.410785 TAATACCGGTTCATCTCGCG 57.589 50.000 15.04 0.00 0.00 5.87
57 58 2.915463 CGATAATACCGGTTCATCTCGC 59.085 50.000 15.04 0.00 0.00 5.03
58 59 2.915463 GCGATAATACCGGTTCATCTCG 59.085 50.000 15.04 16.29 0.00 4.04
59 60 4.175787 AGCGATAATACCGGTTCATCTC 57.824 45.455 15.04 8.46 33.72 2.75
60 61 4.602340 AAGCGATAATACCGGTTCATCT 57.398 40.909 15.04 0.94 43.01 2.90
66 67 0.683412 GGGGAAGCGATAATACCGGT 59.317 55.000 13.98 13.98 39.59 5.28
67 68 0.036671 GGGGGAAGCGATAATACCGG 60.037 60.000 0.00 0.00 0.00 5.28
68 69 3.527434 GGGGGAAGCGATAATACCG 57.473 57.895 0.00 0.00 0.00 4.02
92 93 1.814169 GTGGCGAAATCGGGGAGAC 60.814 63.158 4.84 0.00 40.23 3.36
93 94 2.582436 GTGGCGAAATCGGGGAGA 59.418 61.111 4.84 0.00 40.23 3.71
94 95 2.513897 GGTGGCGAAATCGGGGAG 60.514 66.667 4.84 0.00 40.23 4.30
95 96 2.530958 GAAGGTGGCGAAATCGGGGA 62.531 60.000 4.84 0.00 40.23 4.81
96 97 2.045340 AAGGTGGCGAAATCGGGG 60.045 61.111 4.84 0.00 40.23 5.73
97 98 0.958382 TTGAAGGTGGCGAAATCGGG 60.958 55.000 4.84 0.00 40.23 5.14
98 99 0.168128 GTTGAAGGTGGCGAAATCGG 59.832 55.000 4.84 0.00 40.23 4.18
99 100 0.168128 GGTTGAAGGTGGCGAAATCG 59.832 55.000 0.00 0.00 43.27 3.34
100 101 0.526211 GGGTTGAAGGTGGCGAAATC 59.474 55.000 0.00 0.00 0.00 2.17
101 102 0.178975 TGGGTTGAAGGTGGCGAAAT 60.179 50.000 0.00 0.00 0.00 2.17
102 103 1.104577 GTGGGTTGAAGGTGGCGAAA 61.105 55.000 0.00 0.00 0.00 3.46
103 104 1.527380 GTGGGTTGAAGGTGGCGAA 60.527 57.895 0.00 0.00 0.00 4.70
104 105 2.112297 GTGGGTTGAAGGTGGCGA 59.888 61.111 0.00 0.00 0.00 5.54
105 106 2.203280 TGTGGGTTGAAGGTGGCG 60.203 61.111 0.00 0.00 0.00 5.69
106 107 2.564721 GCTGTGGGTTGAAGGTGGC 61.565 63.158 0.00 0.00 0.00 5.01
107 108 1.152777 TGCTGTGGGTTGAAGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
108 109 0.179020 TCTGCTGTGGGTTGAAGGTG 60.179 55.000 0.00 0.00 0.00 4.00
109 110 0.773644 ATCTGCTGTGGGTTGAAGGT 59.226 50.000 0.00 0.00 0.00 3.50
110 111 2.359900 GTATCTGCTGTGGGTTGAAGG 58.640 52.381 0.00 0.00 0.00 3.46
111 112 2.359900 GGTATCTGCTGTGGGTTGAAG 58.640 52.381 0.00 0.00 0.00 3.02
112 113 1.338674 CGGTATCTGCTGTGGGTTGAA 60.339 52.381 0.00 0.00 0.00 2.69
113 114 0.249120 CGGTATCTGCTGTGGGTTGA 59.751 55.000 0.00 0.00 0.00 3.18
114 115 1.369091 GCGGTATCTGCTGTGGGTTG 61.369 60.000 0.00 0.00 0.00 3.77
115 116 1.078426 GCGGTATCTGCTGTGGGTT 60.078 57.895 0.00 0.00 0.00 4.11
116 117 1.961180 GAGCGGTATCTGCTGTGGGT 61.961 60.000 7.84 0.00 44.18 4.51
117 118 1.227380 GAGCGGTATCTGCTGTGGG 60.227 63.158 7.84 0.00 44.18 4.61
118 119 0.108186 TTGAGCGGTATCTGCTGTGG 60.108 55.000 7.84 0.00 44.18 4.17
119 120 1.002366 GTTGAGCGGTATCTGCTGTG 58.998 55.000 7.84 0.00 44.18 3.66
120 121 0.898320 AGTTGAGCGGTATCTGCTGT 59.102 50.000 7.84 0.00 44.18 4.40
121 122 2.464865 GTAGTTGAGCGGTATCTGCTG 58.535 52.381 7.84 0.00 44.18 4.41
123 124 1.478137 CGTAGTTGAGCGGTATCTGC 58.522 55.000 0.00 0.00 0.00 4.26
124 125 1.202256 TGCGTAGTTGAGCGGTATCTG 60.202 52.381 0.00 0.00 35.87 2.90
125 126 1.100510 TGCGTAGTTGAGCGGTATCT 58.899 50.000 0.00 0.00 35.87 1.98
126 127 1.197910 GTGCGTAGTTGAGCGGTATC 58.802 55.000 0.00 0.00 35.87 2.24
127 128 0.528924 TGTGCGTAGTTGAGCGGTAT 59.471 50.000 0.00 0.00 35.87 2.73
128 129 0.314618 TTGTGCGTAGTTGAGCGGTA 59.685 50.000 0.00 0.00 35.87 4.02
129 130 1.068417 TTGTGCGTAGTTGAGCGGT 59.932 52.632 0.00 0.00 35.87 5.68
130 131 1.491563 GTTGTGCGTAGTTGAGCGG 59.508 57.895 0.00 0.00 35.87 5.52
131 132 1.491563 GGTTGTGCGTAGTTGAGCG 59.508 57.895 0.00 0.00 35.87 5.03
132 133 1.491563 CGGTTGTGCGTAGTTGAGC 59.508 57.895 0.00 0.00 0.00 4.26
133 134 1.491563 GCGGTTGTGCGTAGTTGAG 59.508 57.895 0.00 0.00 0.00 3.02
134 135 1.957186 GGCGGTTGTGCGTAGTTGA 60.957 57.895 0.00 0.00 35.06 3.18
135 136 2.248135 TGGCGGTTGTGCGTAGTTG 61.248 57.895 0.00 0.00 35.06 3.16
136 137 2.109387 TGGCGGTTGTGCGTAGTT 59.891 55.556 0.00 0.00 35.06 2.24
137 138 2.663852 GTGGCGGTTGTGCGTAGT 60.664 61.111 0.00 0.00 35.06 2.73
138 139 2.663520 TGTGGCGGTTGTGCGTAG 60.664 61.111 0.00 0.00 35.06 3.51
139 140 2.968156 GTGTGGCGGTTGTGCGTA 60.968 61.111 0.00 0.00 35.06 4.42
141 142 4.605967 GTGTGTGGCGGTTGTGCG 62.606 66.667 0.00 0.00 35.06 5.34
142 143 4.264638 GGTGTGTGGCGGTTGTGC 62.265 66.667 0.00 0.00 0.00 4.57
143 144 3.591835 GGGTGTGTGGCGGTTGTG 61.592 66.667 0.00 0.00 0.00 3.33
144 145 4.887190 GGGGTGTGTGGCGGTTGT 62.887 66.667 0.00 0.00 0.00 3.32
145 146 4.579384 AGGGGTGTGTGGCGGTTG 62.579 66.667 0.00 0.00 0.00 3.77
146 147 4.265056 GAGGGGTGTGTGGCGGTT 62.265 66.667 0.00 0.00 0.00 4.44
164 165 0.251165 CAATAGGGTTATGCCGGGGG 60.251 60.000 2.18 0.00 38.44 5.40
165 166 0.893727 GCAATAGGGTTATGCCGGGG 60.894 60.000 2.18 0.00 38.44 5.73
166 167 0.179004 TGCAATAGGGTTATGCCGGG 60.179 55.000 2.18 0.00 38.44 5.73
167 168 0.951558 GTGCAATAGGGTTATGCCGG 59.048 55.000 0.00 0.00 38.44 6.13
168 169 0.586319 CGTGCAATAGGGTTATGCCG 59.414 55.000 0.00 0.00 38.44 5.69
169 170 1.333619 CACGTGCAATAGGGTTATGCC 59.666 52.381 0.82 0.00 0.00 4.40
170 171 2.285083 TCACGTGCAATAGGGTTATGC 58.715 47.619 11.67 0.00 0.00 3.14
171 172 3.531538 ACTCACGTGCAATAGGGTTATG 58.468 45.455 11.67 0.00 0.00 1.90
172 173 3.737047 CGACTCACGTGCAATAGGGTTAT 60.737 47.826 11.67 0.00 37.22 1.89
173 174 2.416296 CGACTCACGTGCAATAGGGTTA 60.416 50.000 11.67 0.00 37.22 2.85
174 175 1.671850 CGACTCACGTGCAATAGGGTT 60.672 52.381 11.67 0.00 37.22 4.11
175 176 0.108804 CGACTCACGTGCAATAGGGT 60.109 55.000 11.67 0.00 37.22 4.34
176 177 0.806102 CCGACTCACGTGCAATAGGG 60.806 60.000 11.67 3.27 40.78 3.53
177 178 0.108804 ACCGACTCACGTGCAATAGG 60.109 55.000 11.67 12.42 40.78 2.57
178 179 1.654105 GAACCGACTCACGTGCAATAG 59.346 52.381 11.67 5.48 40.78 1.73
179 180 1.000052 TGAACCGACTCACGTGCAATA 60.000 47.619 11.67 0.00 40.78 1.90
180 181 0.249699 TGAACCGACTCACGTGCAAT 60.250 50.000 11.67 0.00 40.78 3.56
181 182 0.460459 TTGAACCGACTCACGTGCAA 60.460 50.000 11.67 3.68 40.78 4.08
182 183 0.874175 CTTGAACCGACTCACGTGCA 60.874 55.000 11.67 0.00 40.78 4.57
183 184 0.874607 ACTTGAACCGACTCACGTGC 60.875 55.000 11.67 0.00 40.78 5.34
184 185 1.129326 GACTTGAACCGACTCACGTG 58.871 55.000 9.94 9.94 40.78 4.49
185 186 0.031721 GGACTTGAACCGACTCACGT 59.968 55.000 0.00 0.00 40.78 4.49
186 187 0.666577 GGGACTTGAACCGACTCACG 60.667 60.000 0.00 0.00 42.18 4.35
187 188 0.320508 GGGGACTTGAACCGACTCAC 60.321 60.000 0.00 0.00 0.00 3.51
188 189 1.477685 GGGGGACTTGAACCGACTCA 61.478 60.000 0.00 0.00 0.00 3.41
189 190 1.295746 GGGGGACTTGAACCGACTC 59.704 63.158 0.00 0.00 0.00 3.36
190 191 3.479979 GGGGGACTTGAACCGACT 58.520 61.111 0.00 0.00 0.00 4.18
194 195 2.033602 CCACGGGGGACTTGAACC 59.966 66.667 0.00 0.00 40.01 3.62
209 210 4.028490 GCGACATGGTGGGACCCA 62.028 66.667 9.95 9.95 37.50 4.51
210 211 4.796495 GGCGACATGGTGGGACCC 62.796 72.222 2.45 2.45 37.50 4.46
211 212 4.796495 GGGCGACATGGTGGGACC 62.796 72.222 0.00 0.00 39.22 4.46
212 213 4.796495 GGGGCGACATGGTGGGAC 62.796 72.222 0.00 0.00 0.00 4.46
227 228 0.758734 TCATGATACAGCTTCGGGGG 59.241 55.000 0.00 0.00 0.00 5.40
228 229 1.414181 AGTCATGATACAGCTTCGGGG 59.586 52.381 0.00 0.00 0.00 5.73
229 230 2.748605 GAGTCATGATACAGCTTCGGG 58.251 52.381 0.00 0.00 0.00 5.14
230 231 2.389059 CGAGTCATGATACAGCTTCGG 58.611 52.381 0.00 0.00 0.00 4.30
237 238 2.270923 GCTGTTGCGAGTCATGATACA 58.729 47.619 0.00 0.00 0.00 2.29
245 246 0.867746 TGTTGATGCTGTTGCGAGTC 59.132 50.000 0.00 0.00 43.34 3.36
270 271 7.381678 GCCTCGGTATGTTGACTACTTATTAAG 59.618 40.741 1.79 1.79 0.00 1.85
272 273 6.548622 AGCCTCGGTATGTTGACTACTTATTA 59.451 38.462 0.00 0.00 0.00 0.98
273 274 5.363005 AGCCTCGGTATGTTGACTACTTATT 59.637 40.000 0.00 0.00 0.00 1.40
274 275 4.894114 AGCCTCGGTATGTTGACTACTTAT 59.106 41.667 0.00 0.00 0.00 1.73
285 286 4.530857 GCGGCAGCCTCGGTATGT 62.531 66.667 10.54 0.00 37.42 2.29
292 293 3.200593 CAGATGTGCGGCAGCCTC 61.201 66.667 10.54 0.93 44.33 4.70
305 306 2.893398 GGTTCGTCTCCCGCAGAT 59.107 61.111 0.00 0.00 36.19 2.90
306 307 3.744719 CGGTTCGTCTCCCGCAGA 61.745 66.667 0.00 0.00 37.43 4.26
346 354 4.443598 GCGAAATTGGAGAGACCTTAGGAT 60.444 45.833 4.77 0.00 39.86 3.24
347 355 3.118738 GCGAAATTGGAGAGACCTTAGGA 60.119 47.826 4.77 0.00 39.86 2.94
348 356 3.198872 GCGAAATTGGAGAGACCTTAGG 58.801 50.000 0.00 0.00 39.86 2.69
349 357 2.860735 CGCGAAATTGGAGAGACCTTAG 59.139 50.000 0.00 0.00 39.86 2.18
350 358 2.888594 CGCGAAATTGGAGAGACCTTA 58.111 47.619 0.00 0.00 39.86 2.69
351 359 1.726853 CGCGAAATTGGAGAGACCTT 58.273 50.000 0.00 0.00 39.86 3.50
352 360 0.741221 GCGCGAAATTGGAGAGACCT 60.741 55.000 12.10 0.00 39.86 3.85
353 361 1.716172 GCGCGAAATTGGAGAGACC 59.284 57.895 12.10 0.00 39.54 3.85
354 362 1.076533 TCGCGCGAAATTGGAGAGAC 61.077 55.000 32.97 0.00 0.00 3.36
357 365 0.869068 TTTTCGCGCGAAATTGGAGA 59.131 45.000 46.10 32.49 42.71 3.71
358 366 0.974836 GTTTTCGCGCGAAATTGGAG 59.025 50.000 46.10 12.69 42.71 3.86
359 367 0.386226 GGTTTTCGCGCGAAATTGGA 60.386 50.000 46.10 33.46 42.71 3.53
362 376 1.841450 TTTGGTTTTCGCGCGAAATT 58.159 40.000 46.10 0.00 42.71 1.82
378 392 6.977502 TCTTTCATGTTGTGTATGGTGTTTTG 59.022 34.615 0.00 0.00 0.00 2.44
386 400 8.745837 GTCACTTTTTCTTTCATGTTGTGTATG 58.254 33.333 0.00 0.00 0.00 2.39
390 404 7.579589 TTGTCACTTTTTCTTTCATGTTGTG 57.420 32.000 0.00 0.00 0.00 3.33
392 406 9.316859 GTTTTTGTCACTTTTTCTTTCATGTTG 57.683 29.630 0.00 0.00 0.00 3.33
393 407 9.050601 TGTTTTTGTCACTTTTTCTTTCATGTT 57.949 25.926 0.00 0.00 0.00 2.71
396 410 7.659390 TGGTGTTTTTGTCACTTTTTCTTTCAT 59.341 29.630 0.00 0.00 36.25 2.57
397 411 6.986817 TGGTGTTTTTGTCACTTTTTCTTTCA 59.013 30.769 0.00 0.00 36.25 2.69
398 412 7.042389 TGTGGTGTTTTTGTCACTTTTTCTTTC 60.042 33.333 0.00 0.00 36.25 2.62
399 413 6.763610 TGTGGTGTTTTTGTCACTTTTTCTTT 59.236 30.769 0.00 0.00 36.25 2.52
400 414 6.201997 GTGTGGTGTTTTTGTCACTTTTTCTT 59.798 34.615 0.00 0.00 36.25 2.52
401 415 5.694458 GTGTGGTGTTTTTGTCACTTTTTCT 59.306 36.000 0.00 0.00 36.25 2.52
402 416 5.463724 TGTGTGGTGTTTTTGTCACTTTTTC 59.536 36.000 0.00 0.00 36.25 2.29
403 417 5.360591 TGTGTGGTGTTTTTGTCACTTTTT 58.639 33.333 0.00 0.00 36.25 1.94
417 431 0.333312 TTGGGGAGTTTGTGTGGTGT 59.667 50.000 0.00 0.00 0.00 4.16
418 432 1.479709 TTTGGGGAGTTTGTGTGGTG 58.520 50.000 0.00 0.00 0.00 4.17
419 433 2.470057 ATTTGGGGAGTTTGTGTGGT 57.530 45.000 0.00 0.00 0.00 4.16
433 448 1.101331 GCAGGCTGAGGAGAATTTGG 58.899 55.000 20.86 0.00 0.00 3.28
488 503 2.690778 GGGCAAAGTACAGCGGCAG 61.691 63.158 1.45 0.00 0.00 4.85
489 504 2.671619 GGGCAAAGTACAGCGGCA 60.672 61.111 1.45 0.00 0.00 5.69
490 505 2.359975 AGGGCAAAGTACAGCGGC 60.360 61.111 0.00 0.00 0.00 6.53
491 506 2.100631 CGAGGGCAAAGTACAGCGG 61.101 63.158 0.00 0.00 0.00 5.52
516 531 3.261897 GGTTTGGATCTGAAGACTGGAGA 59.738 47.826 0.00 0.00 0.00 3.71
565 591 4.605967 CTCTCGCTCGCTCGCTCC 62.606 72.222 0.00 0.00 0.00 4.70
581 611 2.312323 GGCCCTTTTAGCCCTCTCT 58.688 57.895 0.00 0.00 45.16 3.10
1197 1233 2.126071 ACGACATTCACCTCGGCG 60.126 61.111 0.00 0.00 34.07 6.46
1238 1274 4.150454 CGGCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1310 1346 1.472662 AAGGATGGATACCTCGGGCG 61.473 60.000 0.00 0.00 36.67 6.13
1357 1393 2.943033 GCGCCCCACATATATGTAATCC 59.057 50.000 17.86 6.82 39.39 3.01
1364 1400 1.133809 ACCCTGCGCCCCACATATAT 61.134 55.000 4.18 0.00 0.00 0.86
1365 1401 1.764571 GACCCTGCGCCCCACATATA 61.765 60.000 4.18 0.00 0.00 0.86
1422 1458 1.525197 TCGTCACGTTTTAGCAGCTTG 59.475 47.619 0.00 0.00 0.00 4.01
1444 1480 8.560355 ACAATCTGCACTTTGTTATGTATGTA 57.440 30.769 4.12 0.00 32.28 2.29
1445 1481 7.452880 ACAATCTGCACTTTGTTATGTATGT 57.547 32.000 4.12 0.00 32.28 2.29
1446 1482 8.239314 AGAACAATCTGCACTTTGTTATGTATG 58.761 33.333 17.71 0.00 43.95 2.39
1447 1483 8.239314 CAGAACAATCTGCACTTTGTTATGTAT 58.761 33.333 23.48 6.38 46.11 2.29
1521 1557 1.804151 TCTCCTTTGGAAAATGACGCG 59.196 47.619 3.53 3.53 0.00 6.01
1540 1576 3.543680 TTCATCCGGAATCCTTCACTC 57.456 47.619 9.01 0.00 0.00 3.51
1553 1589 1.714794 GGCCTCGACATATTCATCCG 58.285 55.000 0.00 0.00 0.00 4.18
1586 1622 1.742761 AATGCATTCGGTCTGGAGTG 58.257 50.000 5.99 0.00 0.00 3.51
1706 1742 4.275936 AGAAAAGTACACATGAACTGCCAC 59.724 41.667 0.00 0.00 0.00 5.01
1708 1744 5.438761 AAGAAAAGTACACATGAACTGCC 57.561 39.130 0.00 0.00 0.00 4.85
1762 1811 7.190920 AGACAAATTTCTTCTAGGAAACACG 57.809 36.000 0.00 0.00 37.91 4.49
1843 1895 6.721571 TTTCATTCGCTAACACTAAGGAAG 57.278 37.500 0.00 0.00 0.00 3.46
1849 1901 6.425417 TGTGTCAATTTCATTCGCTAACACTA 59.575 34.615 0.00 0.00 36.38 2.74
1878 1930 7.093354 GGAAAATCAAAAGATCCAAAGAGACC 58.907 38.462 0.00 0.00 0.00 3.85
1890 1942 5.221880 CACAATCAGCGGAAAATCAAAAGA 58.778 37.500 0.00 0.00 0.00 2.52
1907 1959 6.648725 ATCTAACTTACGTCAAGCACAATC 57.351 37.500 0.00 0.00 37.83 2.67
1912 1964 9.941664 GTTACTATATCTAACTTACGTCAAGCA 57.058 33.333 0.00 0.00 37.83 3.91
1971 2024 5.182570 GCACAGATACACATGGCATTGATAT 59.817 40.000 13.95 5.54 0.00 1.63
1976 2029 2.026641 GGCACAGATACACATGGCATT 58.973 47.619 0.00 0.00 37.56 3.56
1981 2034 3.441163 GCAATTGGCACAGATACACATG 58.559 45.455 7.72 0.00 42.39 3.21
2047 2100 4.613622 GCAGACAGAACACGTGCAAATATT 60.614 41.667 17.22 0.07 34.18 1.28
2058 2111 1.664016 CCATTTGCGCAGACAGAACAC 60.664 52.381 11.31 0.00 0.00 3.32
2085 2139 6.208599 CCAAAAATGGTCTAGCTACTGGAAAA 59.791 38.462 0.00 0.00 0.00 2.29
2116 2173 7.700322 TCGTAGAACAGAAGCAATATGATTC 57.300 36.000 0.30 0.30 42.60 2.52
2177 2242 1.440893 CACTCCTCCGCATCCTCAG 59.559 63.158 0.00 0.00 0.00 3.35
2224 2289 1.767088 TCCCAGAGATCATCAAGGCAG 59.233 52.381 0.00 0.00 0.00 4.85
2417 2483 8.440771 TCCAAAAGAGAGATTTTCCTAGAAGTT 58.559 33.333 0.00 0.00 30.01 2.66
2522 2588 6.604171 ACCATATATGAACAATCCTCAAGCA 58.396 36.000 14.54 0.00 0.00 3.91
2731 2813 9.468532 AGCAAAGCAGTAGAATTTTTCTTTAAG 57.531 29.630 0.00 0.00 41.14 1.85
2738 2820 8.633561 AGACTTTAGCAAAGCAGTAGAATTTTT 58.366 29.630 8.09 0.00 42.27 1.94
2765 2847 3.068024 TGTTTGCCAAGCTACTTTTCCAG 59.932 43.478 0.00 0.00 0.00 3.86
2766 2848 3.027412 TGTTTGCCAAGCTACTTTTCCA 58.973 40.909 0.00 0.00 0.00 3.53
2768 2850 4.307443 ACTGTTTGCCAAGCTACTTTTC 57.693 40.909 0.00 0.00 0.00 2.29
2769 2851 6.265422 AGAATACTGTTTGCCAAGCTACTTTT 59.735 34.615 0.00 0.00 0.00 2.27
2770 2852 5.770162 AGAATACTGTTTGCCAAGCTACTTT 59.230 36.000 0.00 0.00 0.00 2.66
2771 2853 5.316987 AGAATACTGTTTGCCAAGCTACTT 58.683 37.500 0.00 0.00 0.00 2.24
2772 2854 4.911390 AGAATACTGTTTGCCAAGCTACT 58.089 39.130 0.00 0.00 0.00 2.57
2773 2855 6.108097 GTAGAATACTGTTTGCCAAGCTAC 57.892 41.667 0.00 0.00 38.91 3.58
2787 2869 7.889469 TTTCACCACGAAAGTAGTAGAATACT 58.111 34.615 0.00 0.00 46.63 2.12
2788 2870 8.699283 ATTTCACCACGAAAGTAGTAGAATAC 57.301 34.615 0.00 0.00 46.57 1.89
2789 2871 7.977853 GGATTTCACCACGAAAGTAGTAGAATA 59.022 37.037 0.00 0.00 46.57 1.75
2790 2872 6.817140 GGATTTCACCACGAAAGTAGTAGAAT 59.183 38.462 0.00 0.00 46.57 2.40
2791 2873 6.014840 AGGATTTCACCACGAAAGTAGTAGAA 60.015 38.462 0.00 0.00 46.57 2.10
2792 2874 5.479375 AGGATTTCACCACGAAAGTAGTAGA 59.521 40.000 0.00 0.00 46.57 2.59
2793 2875 5.577164 CAGGATTTCACCACGAAAGTAGTAG 59.423 44.000 0.00 0.00 46.57 2.57
2794 2876 5.011329 ACAGGATTTCACCACGAAAGTAGTA 59.989 40.000 0.00 0.00 46.57 1.82
2795 2877 4.202326 ACAGGATTTCACCACGAAAGTAGT 60.202 41.667 0.00 0.00 46.57 2.73
2991 3073 7.918076 TGTTTCATACCTATTCTCAGGACTTT 58.082 34.615 0.00 0.00 39.18 2.66
2997 3079 9.877178 AGTACTTTGTTTCATACCTATTCTCAG 57.123 33.333 0.00 0.00 0.00 3.35
3009 3091 7.217200 TCTGAACTAGCAGTACTTTGTTTCAT 58.783 34.615 0.00 0.00 37.20 2.57
3010 3092 6.578944 TCTGAACTAGCAGTACTTTGTTTCA 58.421 36.000 0.00 0.00 37.20 2.69
3053 3135 9.686683 AAAAGTTATGCACTATCAAAGGTATCT 57.313 29.630 0.00 0.00 32.94 1.98
3268 3350 4.103311 ACCTTGTCTGTTAAAGGCTCTCTT 59.897 41.667 1.38 0.00 45.82 2.85
3294 3376 7.390162 TGCTTTGAGTTTTGGAAGAAACAAAAT 59.610 29.630 6.61 0.00 45.94 1.82
3307 3389 4.675114 GTCCGTAACATGCTTTGAGTTTTG 59.325 41.667 0.00 0.00 0.00 2.44
3358 3440 4.154918 GCAAGAACTGATACCTGGAAAGTG 59.845 45.833 0.00 0.00 0.00 3.16
3359 3441 4.327680 GCAAGAACTGATACCTGGAAAGT 58.672 43.478 0.00 0.00 0.00 2.66
3394 3476 5.767168 ACAGCTTCTGAATGTCTTTAAAGCT 59.233 36.000 10.51 0.00 46.40 3.74
3398 3480 6.291377 AGTCACAGCTTCTGAATGTCTTTAA 58.709 36.000 0.29 0.00 35.18 1.52
3421 3503 0.609957 TCCAACTGGATGGCAGCAAG 60.610 55.000 5.40 5.40 39.78 4.01
3484 3566 2.504367 ACCACTGGAAAAATGACCGAG 58.496 47.619 0.71 0.00 0.00 4.63
3487 3569 5.476945 ACATCTTACCACTGGAAAAATGACC 59.523 40.000 0.71 0.00 0.00 4.02
3546 3628 7.389053 AGTTTAGGAACATCTACAGCAAAAGAG 59.611 37.037 0.00 0.00 38.26 2.85
3615 3697 6.905067 ATAAGAGGATAATGAGGATGGCAT 57.095 37.500 0.00 0.00 0.00 4.40
3658 3742 6.439375 AGGATAATACATGGCAGGTAATACGA 59.561 38.462 16.56 0.00 0.00 3.43
3660 3744 7.852263 AGAGGATAATACATGGCAGGTAATAC 58.148 38.462 16.56 7.08 0.00 1.89
3661 3745 8.449423 AAGAGGATAATACATGGCAGGTAATA 57.551 34.615 16.56 12.64 0.00 0.98
3662 3746 6.959606 AGAGGATAATACATGGCAGGTAAT 57.040 37.500 16.56 10.65 0.00 1.89
3663 3747 6.763715 AAGAGGATAATACATGGCAGGTAA 57.236 37.500 16.56 0.73 0.00 2.85
3664 3748 8.449423 AATAAGAGGATAATACATGGCAGGTA 57.551 34.615 14.93 14.93 0.00 3.08
3665 3749 6.959606 ATAAGAGGATAATACATGGCAGGT 57.040 37.500 10.57 10.57 0.00 4.00
3666 3750 9.911788 AATAATAAGAGGATAATACATGGCAGG 57.088 33.333 0.00 0.00 0.00 4.85
3678 3762 9.735362 AGGATGGCAGATAATAATAAGAGGATA 57.265 33.333 0.00 0.00 0.00 2.59
3679 3763 8.635647 AGGATGGCAGATAATAATAAGAGGAT 57.364 34.615 0.00 0.00 0.00 3.24
3680 3764 7.679881 TGAGGATGGCAGATAATAATAAGAGGA 59.320 37.037 0.00 0.00 0.00 3.71
3681 3765 7.855375 TGAGGATGGCAGATAATAATAAGAGG 58.145 38.462 0.00 0.00 0.00 3.69
3682 3766 9.902684 AATGAGGATGGCAGATAATAATAAGAG 57.097 33.333 0.00 0.00 0.00 2.85
3694 3778 7.479352 TTCAAATAAAAATGAGGATGGCAGA 57.521 32.000 0.00 0.00 0.00 4.26
3718 3802 1.745087 CAACGTTATGGCCAGATGCTT 59.255 47.619 13.05 0.00 40.92 3.91
3801 3885 4.081697 GGCAAATGTTATAACTTGGCCAGT 60.082 41.667 25.71 3.46 36.73 4.00
4149 4233 8.296713 GCGGAGGCAAGATAATAAATAAATTCA 58.703 33.333 0.00 0.00 39.62 2.57
4152 4236 9.167311 CTAGCGGAGGCAAGATAATAAATAAAT 57.833 33.333 0.00 0.00 43.41 1.40
4153 4237 8.372459 TCTAGCGGAGGCAAGATAATAAATAAA 58.628 33.333 0.00 0.00 43.41 1.40
4154 4238 7.817962 GTCTAGCGGAGGCAAGATAATAAATAA 59.182 37.037 0.00 0.00 43.41 1.40
4155 4239 7.321153 GTCTAGCGGAGGCAAGATAATAAATA 58.679 38.462 0.00 0.00 43.41 1.40
4551 4674 1.308047 TGGCAACACACAGTCATCAC 58.692 50.000 0.00 0.00 46.17 3.06
4584 4707 3.279116 TGCTCAACGCACAGCCAC 61.279 61.111 0.00 0.00 45.47 5.01
4852 4979 7.305763 GCGGAACAAAAACAAAACTACTGTATG 60.306 37.037 0.00 0.00 0.00 2.39
4856 4983 4.859798 TGCGGAACAAAAACAAAACTACTG 59.140 37.500 0.00 0.00 0.00 2.74
4858 4985 5.959652 ATGCGGAACAAAAACAAAACTAC 57.040 34.783 0.00 0.00 0.00 2.73
4860 4987 4.501198 CGTATGCGGAACAAAAACAAAACT 59.499 37.500 0.00 0.00 0.00 2.66
4866 4993 2.031857 TCCACGTATGCGGAACAAAAAC 60.032 45.455 8.39 0.00 43.45 2.43
4869 4996 2.102070 ATCCACGTATGCGGAACAAA 57.898 45.000 8.39 0.00 43.45 2.83
4871 4998 1.364721 CAATCCACGTATGCGGAACA 58.635 50.000 8.39 0.00 43.45 3.18
4872 4999 0.027586 GCAATCCACGTATGCGGAAC 59.972 55.000 8.39 0.00 43.45 3.62
4873 5000 1.092921 GGCAATCCACGTATGCGGAA 61.093 55.000 8.39 0.00 43.45 4.30
4874 5001 1.522806 GGCAATCCACGTATGCGGA 60.523 57.895 8.39 0.00 43.45 5.54
4875 5002 1.095228 AAGGCAATCCACGTATGCGG 61.095 55.000 8.39 0.00 43.45 5.69
4876 5003 0.027979 CAAGGCAATCCACGTATGCG 59.972 55.000 0.19 0.19 40.94 4.73
4877 5004 0.381801 CCAAGGCAATCCACGTATGC 59.618 55.000 6.33 6.33 39.33 3.14
4878 5005 1.024271 CCCAAGGCAATCCACGTATG 58.976 55.000 0.00 0.00 33.74 2.39
4923 5050 6.070656 TCACCACCTTCTTTTCTTCATCAAT 58.929 36.000 0.00 0.00 0.00 2.57
4929 5056 5.649831 AGCATATCACCACCTTCTTTTCTTC 59.350 40.000 0.00 0.00 0.00 2.87
4933 5060 4.884164 GCTAGCATATCACCACCTTCTTTT 59.116 41.667 10.63 0.00 0.00 2.27
4940 5067 1.417890 ACAGGCTAGCATATCACCACC 59.582 52.381 18.24 0.00 0.00 4.61
4941 5068 2.918712 ACAGGCTAGCATATCACCAC 57.081 50.000 18.24 0.00 0.00 4.16
4942 5069 3.455910 AGAAACAGGCTAGCATATCACCA 59.544 43.478 18.24 0.00 0.00 4.17
4943 5070 4.078639 AGAAACAGGCTAGCATATCACC 57.921 45.455 18.24 0.00 0.00 4.02
4946 5073 6.934048 AAGAAAGAAACAGGCTAGCATATC 57.066 37.500 18.24 8.84 0.00 1.63
4965 5092 7.552687 CCAAGTGGAGCATTACTACATAAAGAA 59.447 37.037 0.00 0.00 42.79 2.52
4966 5093 7.047891 CCAAGTGGAGCATTACTACATAAAGA 58.952 38.462 0.00 0.00 42.79 2.52
4967 5094 6.238484 GCCAAGTGGAGCATTACTACATAAAG 60.238 42.308 0.18 0.00 42.79 1.85
4968 5095 5.588648 GCCAAGTGGAGCATTACTACATAAA 59.411 40.000 0.18 0.00 42.79 1.40
4969 5096 5.104527 AGCCAAGTGGAGCATTACTACATAA 60.105 40.000 0.18 0.00 42.79 1.90
4976 5103 2.939103 CTGTAGCCAAGTGGAGCATTAC 59.061 50.000 0.18 0.00 37.39 1.89
4978 5105 1.340405 CCTGTAGCCAAGTGGAGCATT 60.340 52.381 0.18 0.00 37.39 3.56
5110 5408 1.300080 CAAAACAAGTGGCGCCCTG 60.300 57.895 26.77 20.59 0.00 4.45
5204 5502 2.724839 GCGATTTGTTCTTGTTCGCGAT 60.725 45.455 10.88 0.00 44.52 4.58
5206 5504 0.967803 GCGATTTGTTCTTGTTCGCG 59.032 50.000 0.00 0.00 44.52 5.87
5215 5513 6.920569 TTAGGGAATAAGAGCGATTTGTTC 57.079 37.500 0.00 0.00 0.00 3.18
5317 5619 9.872721 TGAACGAGTAATGGTATAAACAACATA 57.127 29.630 0.00 0.00 0.00 2.29
5318 5620 8.780846 TGAACGAGTAATGGTATAAACAACAT 57.219 30.769 0.00 0.00 0.00 2.71
5319 5621 8.661257 CATGAACGAGTAATGGTATAAACAACA 58.339 33.333 0.00 0.00 0.00 3.33
5320 5622 8.662141 ACATGAACGAGTAATGGTATAAACAAC 58.338 33.333 0.00 0.00 0.00 3.32
5321 5623 8.780846 ACATGAACGAGTAATGGTATAAACAA 57.219 30.769 0.00 0.00 0.00 2.83
5322 5624 8.035984 TGACATGAACGAGTAATGGTATAAACA 58.964 33.333 0.00 0.00 0.00 2.83
5323 5625 8.415192 TGACATGAACGAGTAATGGTATAAAC 57.585 34.615 0.00 0.00 0.00 2.01
5324 5626 7.223971 GCTGACATGAACGAGTAATGGTATAAA 59.776 37.037 0.00 0.00 0.00 1.40
5325 5627 6.700081 GCTGACATGAACGAGTAATGGTATAA 59.300 38.462 0.00 0.00 0.00 0.98
5326 5628 6.040504 AGCTGACATGAACGAGTAATGGTATA 59.959 38.462 0.00 0.00 0.00 1.47
5327 5629 5.050490 GCTGACATGAACGAGTAATGGTAT 58.950 41.667 0.00 0.00 0.00 2.73
5328 5630 4.159693 AGCTGACATGAACGAGTAATGGTA 59.840 41.667 0.00 0.00 0.00 3.25
5329 5631 3.055819 AGCTGACATGAACGAGTAATGGT 60.056 43.478 0.00 0.00 0.00 3.55
5330 5632 3.308053 CAGCTGACATGAACGAGTAATGG 59.692 47.826 8.42 0.00 0.00 3.16
5331 5633 3.308053 CCAGCTGACATGAACGAGTAATG 59.692 47.826 17.39 0.00 0.00 1.90
5332 5634 3.525537 CCAGCTGACATGAACGAGTAAT 58.474 45.455 17.39 0.00 0.00 1.89
5333 5635 2.353704 CCCAGCTGACATGAACGAGTAA 60.354 50.000 17.39 0.00 0.00 2.24
5334 5636 1.204704 CCCAGCTGACATGAACGAGTA 59.795 52.381 17.39 0.00 0.00 2.59
5335 5637 0.036952 CCCAGCTGACATGAACGAGT 60.037 55.000 17.39 0.00 0.00 4.18
5336 5638 0.036952 ACCCAGCTGACATGAACGAG 60.037 55.000 17.39 0.00 0.00 4.18
5337 5639 1.262417 TACCCAGCTGACATGAACGA 58.738 50.000 17.39 0.00 0.00 3.85
5338 5640 2.205074 GATACCCAGCTGACATGAACG 58.795 52.381 17.39 0.00 0.00 3.95
5339 5641 2.171448 AGGATACCCAGCTGACATGAAC 59.829 50.000 17.39 0.00 33.88 3.18
5340 5642 2.435805 GAGGATACCCAGCTGACATGAA 59.564 50.000 17.39 0.00 33.88 2.57
5341 5643 2.042464 GAGGATACCCAGCTGACATGA 58.958 52.381 17.39 0.00 33.88 3.07
5342 5644 1.269988 CGAGGATACCCAGCTGACATG 60.270 57.143 17.39 3.02 33.88 3.21
5343 5645 1.043816 CGAGGATACCCAGCTGACAT 58.956 55.000 17.39 4.73 33.88 3.06
5344 5646 1.676678 GCGAGGATACCCAGCTGACA 61.677 60.000 17.39 0.00 36.08 3.58
5345 5647 1.068250 GCGAGGATACCCAGCTGAC 59.932 63.158 17.39 0.86 36.08 3.51
5346 5648 0.975556 TTGCGAGGATACCCAGCTGA 60.976 55.000 17.39 0.00 38.57 4.26
5347 5649 0.811616 GTTGCGAGGATACCCAGCTG 60.812 60.000 6.78 6.78 38.57 4.24
5348 5650 0.978146 AGTTGCGAGGATACCCAGCT 60.978 55.000 0.00 0.00 38.57 4.24
5349 5651 0.750850 TAGTTGCGAGGATACCCAGC 59.249 55.000 0.00 0.00 38.35 4.85
5350 5652 1.068741 GGTAGTTGCGAGGATACCCAG 59.931 57.143 0.00 0.00 33.06 4.45
5351 5653 1.117150 GGTAGTTGCGAGGATACCCA 58.883 55.000 0.00 0.00 33.06 4.51
5352 5654 1.340568 GAGGTAGTTGCGAGGATACCC 59.659 57.143 6.39 0.00 38.78 3.69
5353 5655 1.340568 GGAGGTAGTTGCGAGGATACC 59.659 57.143 0.00 2.82 38.37 2.73
5354 5656 1.001597 CGGAGGTAGTTGCGAGGATAC 60.002 57.143 0.00 0.00 33.40 2.24
5355 5657 1.315690 CGGAGGTAGTTGCGAGGATA 58.684 55.000 0.00 0.00 33.40 2.59
5356 5658 0.683504 ACGGAGGTAGTTGCGAGGAT 60.684 55.000 0.00 0.00 35.73 3.24
5357 5659 0.896940 AACGGAGGTAGTTGCGAGGA 60.897 55.000 0.00 0.00 35.73 3.71
5358 5660 0.037605 AAACGGAGGTAGTTGCGAGG 60.038 55.000 0.00 0.00 35.73 4.63
5359 5661 1.068474 CAAACGGAGGTAGTTGCGAG 58.932 55.000 0.00 0.00 35.73 5.03
5360 5662 0.320073 CCAAACGGAGGTAGTTGCGA 60.320 55.000 0.00 0.00 35.73 5.10
5361 5663 0.320073 TCCAAACGGAGGTAGTTGCG 60.320 55.000 0.00 0.00 37.94 4.85
5362 5664 1.886886 TTCCAAACGGAGGTAGTTGC 58.113 50.000 0.00 0.00 32.88 4.17
5363 5665 5.243207 AGTAATTCCAAACGGAGGTAGTTG 58.757 41.667 0.00 0.00 32.88 3.16
5364 5666 5.494390 AGTAATTCCAAACGGAGGTAGTT 57.506 39.130 0.00 0.00 32.88 2.24
5365 5667 5.221783 ACAAGTAATTCCAAACGGAGGTAGT 60.222 40.000 0.00 0.00 32.88 2.73
5366 5668 5.243207 ACAAGTAATTCCAAACGGAGGTAG 58.757 41.667 0.00 0.00 32.88 3.18
5367 5669 5.012354 AGACAAGTAATTCCAAACGGAGGTA 59.988 40.000 0.00 0.00 32.88 3.08
5368 5670 4.070009 GACAAGTAATTCCAAACGGAGGT 58.930 43.478 0.00 0.00 32.88 3.85
5369 5671 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
5370 5672 5.468746 TCAAGACAAGTAATTCCAAACGGAG 59.531 40.000 0.00 0.00 32.88 4.63
5371 5673 5.369833 TCAAGACAAGTAATTCCAAACGGA 58.630 37.500 0.00 0.00 0.00 4.69
5372 5674 5.682943 TCAAGACAAGTAATTCCAAACGG 57.317 39.130 0.00 0.00 0.00 4.44
5419 5721 9.477484 GTCGTAAAAATGGATGTATCTAGATGT 57.523 33.333 15.79 1.25 0.00 3.06
5420 5722 9.476202 TGTCGTAAAAATGGATGTATCTAGATG 57.524 33.333 15.79 0.00 0.00 2.90
5422 5724 9.529325 CTTGTCGTAAAAATGGATGTATCTAGA 57.471 33.333 0.00 0.00 0.00 2.43
5423 5725 9.314321 ACTTGTCGTAAAAATGGATGTATCTAG 57.686 33.333 0.00 0.00 0.00 2.43
5425 5727 9.661563 TTACTTGTCGTAAAAATGGATGTATCT 57.338 29.630 0.00 0.00 35.24 1.98
5429 5731 8.241367 GGAATTACTTGTCGTAAAAATGGATGT 58.759 33.333 0.00 0.00 41.17 3.06
5430 5732 7.428183 CGGAATTACTTGTCGTAAAAATGGATG 59.572 37.037 0.00 0.00 41.17 3.51
5431 5733 7.334921 TCGGAATTACTTGTCGTAAAAATGGAT 59.665 33.333 0.00 0.00 41.17 3.41
5432 5734 6.649973 TCGGAATTACTTGTCGTAAAAATGGA 59.350 34.615 0.00 0.00 41.17 3.41
5433 5735 6.833839 TCGGAATTACTTGTCGTAAAAATGG 58.166 36.000 0.00 0.00 41.17 3.16
5434 5736 7.005857 CGTTCGGAATTACTTGTCGTAAAAATG 59.994 37.037 0.00 0.00 41.17 2.32
5435 5737 7.011189 CGTTCGGAATTACTTGTCGTAAAAAT 58.989 34.615 0.00 0.00 41.17 1.82
5436 5738 6.354080 CGTTCGGAATTACTTGTCGTAAAAA 58.646 36.000 0.00 0.00 41.17 1.94
5437 5739 5.107530 CCGTTCGGAATTACTTGTCGTAAAA 60.108 40.000 5.19 0.00 41.17 1.52
5438 5740 4.385447 CCGTTCGGAATTACTTGTCGTAAA 59.615 41.667 5.19 0.00 41.17 2.01
5439 5741 3.919804 CCGTTCGGAATTACTTGTCGTAA 59.080 43.478 5.19 0.00 41.97 3.18
5440 5742 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
5441 5743 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
5442 5744 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5443 5745 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5444 5746 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5445 5747 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5446 5748 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5447 5749 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5448 5750 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5449 5751 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5450 5752 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
5451 5753 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
5452 5754 1.631405 TTTACTCCCTCCGTTCGGAA 58.369 50.000 14.79 0.04 33.41 4.30
5453 5755 1.547372 CTTTTACTCCCTCCGTTCGGA 59.453 52.381 13.34 13.34 0.00 4.55
5454 5756 1.547372 TCTTTTACTCCCTCCGTTCGG 59.453 52.381 4.74 4.74 0.00 4.30
5455 5757 3.308438 TTCTTTTACTCCCTCCGTTCG 57.692 47.619 0.00 0.00 0.00 3.95
5456 5758 5.061853 AGTTTTCTTTTACTCCCTCCGTTC 58.938 41.667 0.00 0.00 0.00 3.95
5457 5759 5.045012 AGTTTTCTTTTACTCCCTCCGTT 57.955 39.130 0.00 0.00 0.00 4.44
5458 5760 4.701651 AGTTTTCTTTTACTCCCTCCGT 57.298 40.909 0.00 0.00 0.00 4.69
5459 5761 5.638234 CACTAGTTTTCTTTTACTCCCTCCG 59.362 44.000 0.00 0.00 0.00 4.63
5460 5762 6.531923 ACACTAGTTTTCTTTTACTCCCTCC 58.468 40.000 0.00 0.00 0.00 4.30
5461 5763 9.722184 ATTACACTAGTTTTCTTTTACTCCCTC 57.278 33.333 0.00 0.00 0.00 4.30
5462 5764 9.722184 GATTACACTAGTTTTCTTTTACTCCCT 57.278 33.333 0.00 0.00 0.00 4.20
5463 5765 9.722184 AGATTACACTAGTTTTCTTTTACTCCC 57.278 33.333 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.