Multiple sequence alignment - TraesCS4A01G364500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G364500 chr4A 100.000 2249 0 0 1 2249 637930873 637928625 0.000000e+00 4154
1 TraesCS4A01G364500 chr4A 99.625 799 3 0 1451 2249 210989695 210988897 0.000000e+00 1459
2 TraesCS4A01G364500 chr4A 93.827 243 10 1 482 724 668948866 668948629 5.900000e-96 361
3 TraesCS4A01G364500 chr4A 93.827 243 10 1 482 724 714740957 714740720 5.900000e-96 361
4 TraesCS4A01G364500 chr4A 94.495 109 5 1 295 402 181949411 181949519 1.380000e-37 167
5 TraesCS4A01G364500 chr4A 92.661 109 7 1 295 402 632136461 632136353 2.990000e-34 156
6 TraesCS4A01G364500 chr7A 99.625 799 3 0 1451 2249 43522652 43521854 0.000000e+00 1459
7 TraesCS4A01G364500 chr7A 99.500 800 4 0 1450 2249 229026521 229025722 0.000000e+00 1456
8 TraesCS4A01G364500 chr7A 94.628 242 8 2 483 724 507818065 507817829 9.810000e-99 370
9 TraesCS4A01G364500 chr2B 99.625 799 3 0 1451 2249 593646324 593645526 0.000000e+00 1459
10 TraesCS4A01G364500 chrUn 99.501 801 4 0 1449 2249 49778934 49779734 0.000000e+00 1458
11 TraesCS4A01G364500 chrUn 99.499 799 4 0 1451 2249 128499219 128498421 0.000000e+00 1454
12 TraesCS4A01G364500 chrUn 88.976 127 11 3 295 419 81697127 81697252 1.080000e-33 154
13 TraesCS4A01G364500 chr6B 99.500 800 4 0 1450 2249 577333645 577334444 0.000000e+00 1456
14 TraesCS4A01G364500 chr6B 94.239 243 9 1 482 724 151149805 151150042 1.270000e-97 366
15 TraesCS4A01G364500 chr4B 99.499 799 4 0 1451 2249 411541503 411540705 0.000000e+00 1454
16 TraesCS4A01G364500 chr4B 90.517 116 9 2 295 408 187359229 187359114 3.870000e-33 152
17 TraesCS4A01G364500 chr1A 99.499 799 4 0 1451 2249 203811763 203812561 0.000000e+00 1454
18 TraesCS4A01G364500 chr1A 93.416 243 11 2 482 724 394579136 394578899 2.750000e-94 355
19 TraesCS4A01G364500 chr5D 96.610 354 9 2 905 1256 534004049 534004401 3.220000e-163 584
20 TraesCS4A01G364500 chr5D 91.342 231 11 3 1 226 534003449 534003675 7.800000e-80 307
21 TraesCS4A01G364500 chr5D 88.827 179 5 4 726 896 534003840 534004011 2.930000e-49 206
22 TraesCS4A01G364500 chr5B 84.924 524 25 23 768 1257 674267030 674267533 4.340000e-132 481
23 TraesCS4A01G364500 chr5B 93.827 243 10 1 482 724 509471794 509472031 5.900000e-96 361
24 TraesCS4A01G364500 chr5B 86.937 222 12 5 1 222 674266650 674266854 1.340000e-57 233
25 TraesCS4A01G364500 chr5B 93.333 105 6 1 301 404 82470114 82470010 1.080000e-33 154
26 TraesCS4A01G364500 chr7B 94.650 243 8 1 482 724 1484380 1484617 2.730000e-99 372
27 TraesCS4A01G364500 chr7B 93.802 242 10 1 483 724 658032434 658032198 2.120000e-95 359
28 TraesCS4A01G364500 chr1B 93.776 241 10 1 484 724 133432952 133432717 7.640000e-95 357
29 TraesCS4A01G364500 chr1B 89.256 121 10 3 295 413 585555099 585555218 5.000000e-32 148
30 TraesCS4A01G364500 chr3A 92.105 114 8 1 295 407 718043093 718042980 2.310000e-35 159
31 TraesCS4A01G364500 chr3B 93.458 107 6 1 295 400 190911759 190911653 8.320000e-35 158
32 TraesCS4A01G364500 chr2A 91.304 115 8 2 295 407 676458910 676459024 2.990000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G364500 chr4A 637928625 637930873 2248 True 4154.000000 4154 100.000000 1 2249 1 chr4A.!!$R3 2248
1 TraesCS4A01G364500 chr4A 210988897 210989695 798 True 1459.000000 1459 99.625000 1451 2249 1 chr4A.!!$R1 798
2 TraesCS4A01G364500 chr7A 43521854 43522652 798 True 1459.000000 1459 99.625000 1451 2249 1 chr7A.!!$R1 798
3 TraesCS4A01G364500 chr7A 229025722 229026521 799 True 1456.000000 1456 99.500000 1450 2249 1 chr7A.!!$R2 799
4 TraesCS4A01G364500 chr2B 593645526 593646324 798 True 1459.000000 1459 99.625000 1451 2249 1 chr2B.!!$R1 798
5 TraesCS4A01G364500 chrUn 49778934 49779734 800 False 1458.000000 1458 99.501000 1449 2249 1 chrUn.!!$F1 800
6 TraesCS4A01G364500 chrUn 128498421 128499219 798 True 1454.000000 1454 99.499000 1451 2249 1 chrUn.!!$R1 798
7 TraesCS4A01G364500 chr6B 577333645 577334444 799 False 1456.000000 1456 99.500000 1450 2249 1 chr6B.!!$F2 799
8 TraesCS4A01G364500 chr4B 411540705 411541503 798 True 1454.000000 1454 99.499000 1451 2249 1 chr4B.!!$R2 798
9 TraesCS4A01G364500 chr1A 203811763 203812561 798 False 1454.000000 1454 99.499000 1451 2249 1 chr1A.!!$F1 798
10 TraesCS4A01G364500 chr5D 534003449 534004401 952 False 365.666667 584 92.259667 1 1256 3 chr5D.!!$F1 1255
11 TraesCS4A01G364500 chr5B 674266650 674267533 883 False 357.000000 481 85.930500 1 1257 2 chr5B.!!$F2 1256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 918 0.029567 GGCCTCGTCTCTATCACACG 59.97 60.0 0.0 0.0 34.78 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2225 2.484264 CGTTGTTGATGGAAGAAGGACC 59.516 50.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 1.381165 AACGGTGTGGTTGACTTGGC 61.381 55.000 0.00 0.00 0.00 4.52
63 65 0.179113 CGCCACTTGTTTTGCCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
64 66 1.289276 GCCACTTGTTTTGCCTTGTG 58.711 50.000 0.00 0.00 0.00 3.33
65 67 1.405391 GCCACTTGTTTTGCCTTGTGT 60.405 47.619 0.00 0.00 0.00 3.72
66 68 2.159170 GCCACTTGTTTTGCCTTGTGTA 60.159 45.455 0.00 0.00 0.00 2.90
133 135 5.177327 GTCCACTACGACCGAAAAATAACAA 59.823 40.000 0.00 0.00 0.00 2.83
135 137 6.091169 TCCACTACGACCGAAAAATAACAATC 59.909 38.462 0.00 0.00 0.00 2.67
159 164 5.264060 CGAACAAGAACAAATCGCTCTTA 57.736 39.130 0.00 0.00 28.77 2.10
164 169 5.123979 ACAAGAACAAATCGCTCTTATTCCC 59.876 40.000 0.00 0.00 28.77 3.97
215 224 9.661187 CAAAAGTGCTGTAATAATCTCATGATC 57.339 33.333 0.00 0.00 31.51 2.92
219 228 9.872721 AGTGCTGTAATAATCTCATGATCTATG 57.127 33.333 0.00 0.00 38.17 2.23
220 229 9.650539 GTGCTGTAATAATCTCATGATCTATGT 57.349 33.333 0.00 0.00 38.01 2.29
278 287 8.540492 GTTTATACCATTACTCGTTCATGTCAG 58.460 37.037 0.00 0.00 0.00 3.51
279 288 3.262420 ACCATTACTCGTTCATGTCAGC 58.738 45.455 0.00 0.00 0.00 4.26
283 293 0.036952 ACTCGTTCATGTCAGCTGGG 60.037 55.000 15.13 1.48 0.00 4.45
298 308 1.538419 GCTGGGTATCCTCGCAACTAC 60.538 57.143 0.00 0.00 32.86 2.73
299 309 1.068741 CTGGGTATCCTCGCAACTACC 59.931 57.143 0.00 0.00 34.19 3.18
300 310 1.342674 TGGGTATCCTCGCAACTACCT 60.343 52.381 0.00 0.00 35.12 3.08
301 311 1.340568 GGGTATCCTCGCAACTACCTC 59.659 57.143 0.00 0.00 35.12 3.85
302 312 1.340568 GGTATCCTCGCAACTACCTCC 59.659 57.143 0.00 0.00 32.57 4.30
303 313 1.001597 GTATCCTCGCAACTACCTCCG 60.002 57.143 0.00 0.00 0.00 4.63
305 315 0.896940 TCCTCGCAACTACCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
307 317 1.068474 CTCGCAACTACCTCCGTTTG 58.932 55.000 0.00 0.00 0.00 2.93
308 318 0.320073 TCGCAACTACCTCCGTTTGG 60.320 55.000 0.00 0.00 0.00 3.28
310 320 1.874739 CGCAACTACCTCCGTTTGGAA 60.875 52.381 0.00 0.00 45.87 3.53
312 322 2.817844 GCAACTACCTCCGTTTGGAATT 59.182 45.455 0.00 0.00 45.87 2.17
313 323 4.004982 GCAACTACCTCCGTTTGGAATTA 58.995 43.478 0.00 0.00 45.87 1.40
316 326 5.494390 ACTACCTCCGTTTGGAATTACTT 57.506 39.130 0.00 0.00 45.87 2.24
317 327 5.243207 ACTACCTCCGTTTGGAATTACTTG 58.757 41.667 0.00 0.00 45.87 3.16
318 328 4.094830 ACCTCCGTTTGGAATTACTTGT 57.905 40.909 0.00 0.00 45.87 3.16
319 329 4.070009 ACCTCCGTTTGGAATTACTTGTC 58.930 43.478 0.00 0.00 45.87 3.18
320 330 4.202430 ACCTCCGTTTGGAATTACTTGTCT 60.202 41.667 0.00 0.00 45.87 3.41
321 331 4.760204 CCTCCGTTTGGAATTACTTGTCTT 59.240 41.667 0.00 0.00 45.87 3.01
323 333 5.369833 TCCGTTTGGAATTACTTGTCTTGA 58.630 37.500 0.00 0.00 42.85 3.02
325 335 7.162761 TCCGTTTGGAATTACTTGTCTTGATA 58.837 34.615 0.00 0.00 42.85 2.15
374 384 9.477484 ACATCTAGATACATCCATTTTTACGAC 57.523 33.333 4.54 0.00 0.00 4.34
375 385 9.476202 CATCTAGATACATCCATTTTTACGACA 57.524 33.333 4.54 0.00 0.00 4.35
377 387 9.529325 TCTAGATACATCCATTTTTACGACAAG 57.471 33.333 0.00 0.00 0.00 3.16
378 388 9.314321 CTAGATACATCCATTTTTACGACAAGT 57.686 33.333 0.00 0.00 0.00 3.16
380 390 9.661563 AGATACATCCATTTTTACGACAAGTAA 57.338 29.630 0.00 0.00 43.05 2.24
384 394 8.241367 ACATCCATTTTTACGACAAGTAATTCC 58.759 33.333 0.00 0.00 44.03 3.01
385 395 6.833839 TCCATTTTTACGACAAGTAATTCCG 58.166 36.000 0.00 0.00 44.03 4.30
386 396 6.649973 TCCATTTTTACGACAAGTAATTCCGA 59.350 34.615 0.00 0.00 44.03 4.55
387 397 7.172875 TCCATTTTTACGACAAGTAATTCCGAA 59.827 33.333 0.00 0.00 44.03 4.30
388 398 7.269724 CCATTTTTACGACAAGTAATTCCGAAC 59.730 37.037 0.00 0.00 44.03 3.95
389 399 5.499268 TTTACGACAAGTAATTCCGAACG 57.501 39.130 0.00 0.00 44.03 3.95
390 400 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
391 401 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
392 402 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
393 403 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
394 404 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
395 405 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
412 422 5.638234 CGGAGGGAGTAAAAGAAAACTAGTG 59.362 44.000 0.00 0.00 0.00 2.74
413 423 6.531923 GGAGGGAGTAAAAGAAAACTAGTGT 58.468 40.000 0.00 0.00 0.00 3.55
414 424 7.524367 CGGAGGGAGTAAAAGAAAACTAGTGTA 60.524 40.741 0.00 0.00 0.00 2.90
415 425 8.152898 GGAGGGAGTAAAAGAAAACTAGTGTAA 58.847 37.037 0.00 0.00 0.00 2.41
417 427 9.722184 AGGGAGTAAAAGAAAACTAGTGTAATC 57.278 33.333 0.00 0.00 0.00 1.75
418 428 9.722184 GGGAGTAAAAGAAAACTAGTGTAATCT 57.278 33.333 0.00 0.00 0.00 2.40
466 476 3.643763 CAACTAGGAGTATGATGACCGC 58.356 50.000 0.00 0.00 0.00 5.68
506 516 4.691326 TTTTTGCGGGGTTAAAAGGATT 57.309 36.364 0.00 0.00 0.00 3.01
507 517 4.691326 TTTTGCGGGGTTAAAAGGATTT 57.309 36.364 0.00 0.00 42.41 2.17
508 518 3.945981 TTGCGGGGTTAAAAGGATTTC 57.054 42.857 0.00 0.00 37.28 2.17
509 519 2.877866 TGCGGGGTTAAAAGGATTTCA 58.122 42.857 0.00 0.00 37.28 2.69
510 520 3.436243 TGCGGGGTTAAAAGGATTTCAT 58.564 40.909 0.00 0.00 37.28 2.57
511 521 3.835395 TGCGGGGTTAAAAGGATTTCATT 59.165 39.130 0.00 0.00 37.28 2.57
512 522 4.180817 GCGGGGTTAAAAGGATTTCATTG 58.819 43.478 0.00 0.00 37.28 2.82
513 523 4.180817 CGGGGTTAAAAGGATTTCATTGC 58.819 43.478 0.00 0.00 37.28 3.56
514 524 4.081697 CGGGGTTAAAAGGATTTCATTGCT 60.082 41.667 0.00 0.00 37.28 3.91
515 525 5.419542 GGGGTTAAAAGGATTTCATTGCTC 58.580 41.667 0.00 0.00 37.28 4.26
516 526 5.046663 GGGGTTAAAAGGATTTCATTGCTCA 60.047 40.000 0.00 0.00 37.28 4.26
517 527 6.463360 GGGTTAAAAGGATTTCATTGCTCAA 58.537 36.000 0.00 0.00 37.28 3.02
518 528 6.368791 GGGTTAAAAGGATTTCATTGCTCAAC 59.631 38.462 0.00 0.00 37.28 3.18
519 529 6.368791 GGTTAAAAGGATTTCATTGCTCAACC 59.631 38.462 0.00 0.00 37.28 3.77
520 530 3.855689 AAGGATTTCATTGCTCAACCG 57.144 42.857 0.00 0.00 0.00 4.44
521 531 2.795329 AGGATTTCATTGCTCAACCGT 58.205 42.857 0.00 0.00 0.00 4.83
522 532 3.157087 AGGATTTCATTGCTCAACCGTT 58.843 40.909 0.00 0.00 0.00 4.44
523 533 3.057315 AGGATTTCATTGCTCAACCGTTG 60.057 43.478 4.78 4.78 0.00 4.10
524 534 2.791383 TTTCATTGCTCAACCGTTGG 57.209 45.000 11.35 3.75 0.00 3.77
525 535 1.974265 TTCATTGCTCAACCGTTGGA 58.026 45.000 11.35 0.00 0.00 3.53
526 536 1.974265 TCATTGCTCAACCGTTGGAA 58.026 45.000 11.35 3.14 0.00 3.53
527 537 2.513753 TCATTGCTCAACCGTTGGAAT 58.486 42.857 11.35 5.16 0.00 3.01
528 538 3.680490 TCATTGCTCAACCGTTGGAATA 58.320 40.909 11.35 0.00 0.00 1.75
529 539 4.269183 TCATTGCTCAACCGTTGGAATAT 58.731 39.130 11.35 0.00 0.00 1.28
530 540 4.704540 TCATTGCTCAACCGTTGGAATATT 59.295 37.500 11.35 0.00 0.00 1.28
531 541 4.695217 TTGCTCAACCGTTGGAATATTC 57.305 40.909 11.35 6.93 0.00 1.75
532 542 2.675844 TGCTCAACCGTTGGAATATTCG 59.324 45.455 11.35 0.00 0.00 3.34
533 543 2.676342 GCTCAACCGTTGGAATATTCGT 59.324 45.455 11.35 0.00 0.00 3.85
534 544 3.126343 GCTCAACCGTTGGAATATTCGTT 59.874 43.478 11.35 4.86 0.00 3.85
535 545 4.726876 GCTCAACCGTTGGAATATTCGTTC 60.727 45.833 11.35 1.68 0.00 3.95
536 546 3.685756 TCAACCGTTGGAATATTCGTTCC 59.314 43.478 11.35 0.00 46.35 3.62
537 547 3.622166 ACCGTTGGAATATTCGTTCCT 57.378 42.857 9.32 0.00 46.32 3.36
538 548 3.946606 ACCGTTGGAATATTCGTTCCTT 58.053 40.909 9.32 0.00 46.32 3.36
539 549 4.329392 ACCGTTGGAATATTCGTTCCTTT 58.671 39.130 9.32 0.00 46.32 3.11
540 550 4.393990 ACCGTTGGAATATTCGTTCCTTTC 59.606 41.667 9.32 0.00 46.32 2.62
541 551 4.201881 CCGTTGGAATATTCGTTCCTTTCC 60.202 45.833 9.32 0.00 46.32 3.13
542 552 4.634443 CGTTGGAATATTCGTTCCTTTCCT 59.366 41.667 9.32 0.00 46.32 3.36
543 553 5.813672 CGTTGGAATATTCGTTCCTTTCCTA 59.186 40.000 9.32 0.00 46.32 2.94
544 554 6.238022 CGTTGGAATATTCGTTCCTTTCCTAC 60.238 42.308 9.32 0.00 46.32 3.18
545 555 6.302535 TGGAATATTCGTTCCTTTCCTACA 57.697 37.500 9.32 0.00 46.32 2.74
546 556 6.895782 TGGAATATTCGTTCCTTTCCTACAT 58.104 36.000 9.32 0.00 46.32 2.29
547 557 8.025270 TGGAATATTCGTTCCTTTCCTACATA 57.975 34.615 9.32 0.00 46.32 2.29
548 558 8.148351 TGGAATATTCGTTCCTTTCCTACATAG 58.852 37.037 9.32 0.00 46.32 2.23
549 559 7.117956 GGAATATTCGTTCCTTTCCTACATAGC 59.882 40.741 9.32 0.00 43.49 2.97
550 560 4.811969 TTCGTTCCTTTCCTACATAGCA 57.188 40.909 0.00 0.00 0.00 3.49
551 561 4.386867 TCGTTCCTTTCCTACATAGCAG 57.613 45.455 0.00 0.00 0.00 4.24
552 562 4.021229 TCGTTCCTTTCCTACATAGCAGA 58.979 43.478 0.00 0.00 0.00 4.26
553 563 4.098044 TCGTTCCTTTCCTACATAGCAGAG 59.902 45.833 0.00 0.00 0.00 3.35
554 564 4.698575 GTTCCTTTCCTACATAGCAGAGG 58.301 47.826 0.00 0.00 0.00 3.69
555 565 4.265856 TCCTTTCCTACATAGCAGAGGA 57.734 45.455 0.00 0.00 37.60 3.71
556 566 4.620723 TCCTTTCCTACATAGCAGAGGAA 58.379 43.478 0.00 0.00 45.54 3.36
557 567 4.406003 TCCTTTCCTACATAGCAGAGGAAC 59.594 45.833 2.10 0.00 46.57 3.62
558 568 4.363999 CTTTCCTACATAGCAGAGGAACG 58.636 47.826 2.10 0.00 46.57 3.95
559 569 3.014304 TCCTACATAGCAGAGGAACGT 57.986 47.619 0.00 0.00 36.42 3.99
560 570 2.950309 TCCTACATAGCAGAGGAACGTC 59.050 50.000 0.00 0.00 36.42 4.34
561 571 2.952978 CCTACATAGCAGAGGAACGTCT 59.047 50.000 0.00 0.00 31.45 4.18
562 572 2.949451 ACATAGCAGAGGAACGTCTG 57.051 50.000 16.79 16.79 45.91 3.51
566 576 4.586618 CAGAGGAACGTCTGCAGG 57.413 61.111 15.13 0.36 37.74 4.85
567 577 1.668294 CAGAGGAACGTCTGCAGGT 59.332 57.895 15.13 1.12 37.74 4.00
568 578 0.389166 CAGAGGAACGTCTGCAGGTC 60.389 60.000 15.13 6.81 37.74 3.85
569 579 1.079750 GAGGAACGTCTGCAGGTCC 60.080 63.158 15.13 15.03 0.00 4.46
570 580 1.816863 GAGGAACGTCTGCAGGTCCA 61.817 60.000 15.13 0.00 0.00 4.02
571 581 1.374758 GGAACGTCTGCAGGTCCAG 60.375 63.158 15.13 3.69 0.00 3.86
572 582 1.666011 GAACGTCTGCAGGTCCAGA 59.334 57.895 15.13 0.00 39.42 3.86
573 583 0.389166 GAACGTCTGCAGGTCCAGAG 60.389 60.000 15.13 0.47 42.14 3.35
574 584 2.125753 CGTCTGCAGGTCCAGAGC 60.126 66.667 15.13 0.00 42.14 4.09
575 585 2.125753 GTCTGCAGGTCCAGAGCG 60.126 66.667 15.13 0.00 42.14 5.03
576 586 4.074526 TCTGCAGGTCCAGAGCGC 62.075 66.667 15.13 0.00 36.96 5.92
577 587 4.383861 CTGCAGGTCCAGAGCGCA 62.384 66.667 11.47 13.00 37.05 6.09
578 588 3.889134 CTGCAGGTCCAGAGCGCAA 62.889 63.158 11.47 0.00 37.67 4.85
579 589 3.426568 GCAGGTCCAGAGCGCAAC 61.427 66.667 11.47 2.78 0.00 4.17
580 590 2.743928 CAGGTCCAGAGCGCAACC 60.744 66.667 11.47 8.99 0.00 3.77
581 591 3.241530 AGGTCCAGAGCGCAACCA 61.242 61.111 11.47 0.00 34.09 3.67
582 592 2.281484 GGTCCAGAGCGCAACCAA 60.281 61.111 11.47 0.00 0.00 3.67
583 593 1.896660 GGTCCAGAGCGCAACCAAA 60.897 57.895 11.47 0.00 0.00 3.28
584 594 1.282875 GTCCAGAGCGCAACCAAAC 59.717 57.895 11.47 0.00 0.00 2.93
585 595 1.148273 TCCAGAGCGCAACCAAACT 59.852 52.632 11.47 0.00 0.00 2.66
586 596 1.165907 TCCAGAGCGCAACCAAACTG 61.166 55.000 11.47 7.02 0.00 3.16
587 597 1.370900 CAGAGCGCAACCAAACTGC 60.371 57.895 11.47 0.00 36.41 4.40
588 598 1.823470 AGAGCGCAACCAAACTGCA 60.823 52.632 11.47 0.00 39.91 4.41
589 599 1.370900 GAGCGCAACCAAACTGCAG 60.371 57.895 13.48 13.48 39.91 4.41
590 600 2.063541 GAGCGCAACCAAACTGCAGT 62.064 55.000 15.25 15.25 39.91 4.40
591 601 1.226945 GCGCAACCAAACTGCAGTT 60.227 52.632 26.36 26.36 39.91 3.16
592 602 1.208642 GCGCAACCAAACTGCAGTTC 61.209 55.000 31.20 16.81 39.91 3.01
593 603 0.929824 CGCAACCAAACTGCAGTTCG 60.930 55.000 31.20 23.80 39.91 3.95
594 604 0.594796 GCAACCAAACTGCAGTTCGG 60.595 55.000 30.76 30.76 38.07 4.30
595 605 0.594796 CAACCAAACTGCAGTTCGGC 60.595 55.000 31.98 0.00 35.56 5.54
596 606 1.734388 AACCAAACTGCAGTTCGGCC 61.734 55.000 31.98 0.00 35.56 6.13
597 607 2.644992 CAAACTGCAGTTCGGCCC 59.355 61.111 31.20 0.00 37.25 5.80
598 608 1.898574 CAAACTGCAGTTCGGCCCT 60.899 57.895 31.20 12.86 37.25 5.19
599 609 1.152756 AAACTGCAGTTCGGCCCTT 60.153 52.632 31.20 12.10 37.25 3.95
600 610 1.172812 AAACTGCAGTTCGGCCCTTC 61.173 55.000 31.20 0.00 37.25 3.46
601 611 3.121030 CTGCAGTTCGGCCCTTCG 61.121 66.667 5.25 0.00 0.00 3.79
602 612 3.589654 CTGCAGTTCGGCCCTTCGA 62.590 63.158 5.25 0.00 37.38 3.71
603 613 2.125106 GCAGTTCGGCCCTTCGAT 60.125 61.111 0.00 0.00 39.03 3.59
604 614 1.745489 GCAGTTCGGCCCTTCGATT 60.745 57.895 0.00 0.00 39.03 3.34
605 615 1.982073 GCAGTTCGGCCCTTCGATTG 61.982 60.000 0.00 0.00 39.03 2.67
606 616 0.673644 CAGTTCGGCCCTTCGATTGT 60.674 55.000 0.00 0.00 39.03 2.71
607 617 0.391263 AGTTCGGCCCTTCGATTGTC 60.391 55.000 0.00 0.00 39.03 3.18
608 618 1.078708 TTCGGCCCTTCGATTGTCC 60.079 57.895 0.00 0.00 39.03 4.02
609 619 2.845752 TTCGGCCCTTCGATTGTCCG 62.846 60.000 0.00 9.49 39.03 4.79
610 620 2.582436 GGCCCTTCGATTGTCCGA 59.418 61.111 0.00 0.00 36.70 4.55
611 621 1.078708 GGCCCTTCGATTGTCCGAA 60.079 57.895 0.00 0.00 45.01 4.30
612 622 0.675522 GGCCCTTCGATTGTCCGAAA 60.676 55.000 0.00 0.00 46.19 3.46
613 623 0.727398 GCCCTTCGATTGTCCGAAAG 59.273 55.000 0.00 0.00 46.19 2.62
614 624 1.944430 GCCCTTCGATTGTCCGAAAGT 60.944 52.381 0.00 0.00 46.19 2.66
615 625 2.675889 GCCCTTCGATTGTCCGAAAGTA 60.676 50.000 0.00 0.00 46.19 2.24
616 626 3.187700 CCCTTCGATTGTCCGAAAGTAG 58.812 50.000 0.00 0.00 46.19 2.57
617 627 2.603560 CCTTCGATTGTCCGAAAGTAGC 59.396 50.000 0.00 0.00 46.19 3.58
618 628 3.250744 CTTCGATTGTCCGAAAGTAGCA 58.749 45.455 0.00 0.00 46.19 3.49
619 629 3.306917 TCGATTGTCCGAAAGTAGCAA 57.693 42.857 0.00 0.00 35.42 3.91
620 630 3.250744 TCGATTGTCCGAAAGTAGCAAG 58.749 45.455 0.00 0.00 35.42 4.01
621 631 2.993899 CGATTGTCCGAAAGTAGCAAGT 59.006 45.455 0.00 0.00 0.00 3.16
622 632 3.181530 CGATTGTCCGAAAGTAGCAAGTG 60.182 47.826 0.00 0.00 0.00 3.16
623 633 2.902705 TGTCCGAAAGTAGCAAGTGT 57.097 45.000 0.00 0.00 0.00 3.55
624 634 2.479837 TGTCCGAAAGTAGCAAGTGTG 58.520 47.619 0.00 0.00 0.00 3.82
625 635 2.159014 TGTCCGAAAGTAGCAAGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
626 636 2.221055 GTCCGAAAGTAGCAAGTGTGTG 59.779 50.000 0.00 0.00 0.00 3.82
627 637 1.531149 CCGAAAGTAGCAAGTGTGTGG 59.469 52.381 0.00 0.00 0.00 4.17
628 638 1.069906 CGAAAGTAGCAAGTGTGTGGC 60.070 52.381 0.00 0.00 0.00 5.01
629 639 2.222027 GAAAGTAGCAAGTGTGTGGCT 58.778 47.619 0.00 0.00 41.51 4.75
630 640 3.399330 GAAAGTAGCAAGTGTGTGGCTA 58.601 45.455 0.00 0.00 39.01 3.93
631 641 3.485463 AAGTAGCAAGTGTGTGGCTAA 57.515 42.857 0.00 0.00 41.37 3.09
632 642 2.767505 AGTAGCAAGTGTGTGGCTAAC 58.232 47.619 0.00 0.00 41.37 2.34
633 643 2.104111 AGTAGCAAGTGTGTGGCTAACA 59.896 45.455 0.00 0.00 41.37 2.41
634 644 2.051334 AGCAAGTGTGTGGCTAACAA 57.949 45.000 0.00 0.00 41.57 2.83
635 645 1.676006 AGCAAGTGTGTGGCTAACAAC 59.324 47.619 0.00 0.00 41.57 3.32
636 646 1.596954 GCAAGTGTGTGGCTAACAACG 60.597 52.381 0.00 0.00 41.57 4.10
637 647 1.668751 CAAGTGTGTGGCTAACAACGT 59.331 47.619 0.00 0.00 41.57 3.99
638 648 2.032680 AGTGTGTGGCTAACAACGTT 57.967 45.000 0.00 0.00 41.57 3.99
639 649 1.937899 AGTGTGTGGCTAACAACGTTC 59.062 47.619 0.00 0.00 41.57 3.95
640 650 1.937899 GTGTGTGGCTAACAACGTTCT 59.062 47.619 0.00 0.00 41.57 3.01
641 651 1.937223 TGTGTGGCTAACAACGTTCTG 59.063 47.619 0.00 0.00 41.57 3.02
642 652 2.206750 GTGTGGCTAACAACGTTCTGA 58.793 47.619 0.00 0.00 41.57 3.27
643 653 2.806244 GTGTGGCTAACAACGTTCTGAT 59.194 45.455 0.00 0.00 41.57 2.90
644 654 3.250040 GTGTGGCTAACAACGTTCTGATT 59.750 43.478 0.00 0.00 41.57 2.57
645 655 3.496884 TGTGGCTAACAACGTTCTGATTC 59.503 43.478 0.00 0.00 35.24 2.52
646 656 3.071479 TGGCTAACAACGTTCTGATTCC 58.929 45.455 0.00 0.00 0.00 3.01
647 657 3.244422 TGGCTAACAACGTTCTGATTCCT 60.244 43.478 0.00 0.00 0.00 3.36
648 658 4.020928 TGGCTAACAACGTTCTGATTCCTA 60.021 41.667 0.00 0.00 0.00 2.94
649 659 4.329256 GGCTAACAACGTTCTGATTCCTAC 59.671 45.833 0.00 0.00 0.00 3.18
650 660 5.169295 GCTAACAACGTTCTGATTCCTACT 58.831 41.667 0.00 0.00 0.00 2.57
651 661 5.638234 GCTAACAACGTTCTGATTCCTACTT 59.362 40.000 0.00 0.00 0.00 2.24
652 662 6.810182 GCTAACAACGTTCTGATTCCTACTTA 59.190 38.462 0.00 0.00 0.00 2.24
653 663 7.201418 GCTAACAACGTTCTGATTCCTACTTAC 60.201 40.741 0.00 0.00 0.00 2.34
654 664 6.092955 ACAACGTTCTGATTCCTACTTACA 57.907 37.500 0.00 0.00 0.00 2.41
655 665 6.698380 ACAACGTTCTGATTCCTACTTACAT 58.302 36.000 0.00 0.00 0.00 2.29
656 666 6.590292 ACAACGTTCTGATTCCTACTTACATG 59.410 38.462 0.00 0.00 0.00 3.21
657 667 6.525578 ACGTTCTGATTCCTACTTACATGA 57.474 37.500 0.00 0.00 0.00 3.07
658 668 6.565234 ACGTTCTGATTCCTACTTACATGAG 58.435 40.000 0.00 0.00 0.00 2.90
659 669 5.460419 CGTTCTGATTCCTACTTACATGAGC 59.540 44.000 0.00 0.00 0.00 4.26
660 670 6.341316 GTTCTGATTCCTACTTACATGAGCA 58.659 40.000 0.00 0.00 0.00 4.26
661 671 6.544928 TCTGATTCCTACTTACATGAGCAA 57.455 37.500 0.00 0.00 0.00 3.91
662 672 7.129457 TCTGATTCCTACTTACATGAGCAAT 57.871 36.000 0.00 0.00 0.00 3.56
663 673 8.250143 TCTGATTCCTACTTACATGAGCAATA 57.750 34.615 0.00 0.00 0.00 1.90
664 674 8.363390 TCTGATTCCTACTTACATGAGCAATAG 58.637 37.037 0.00 0.00 0.00 1.73
665 675 8.250143 TGATTCCTACTTACATGAGCAATAGA 57.750 34.615 0.00 0.00 0.00 1.98
666 676 8.363390 TGATTCCTACTTACATGAGCAATAGAG 58.637 37.037 0.00 0.00 0.00 2.43
667 677 7.898014 TTCCTACTTACATGAGCAATAGAGA 57.102 36.000 0.00 0.00 0.00 3.10
668 678 8.484214 TTCCTACTTACATGAGCAATAGAGAT 57.516 34.615 0.00 0.00 0.00 2.75
669 679 9.588096 TTCCTACTTACATGAGCAATAGAGATA 57.412 33.333 0.00 0.00 0.00 1.98
670 680 9.760926 TCCTACTTACATGAGCAATAGAGATAT 57.239 33.333 0.00 0.00 0.00 1.63
698 708 9.920946 TCTTTCACCAAAGAGCCTATTAATATT 57.079 29.630 0.00 0.00 42.66 1.28
700 710 9.920946 TTTCACCAAAGAGCCTATTAATATTCT 57.079 29.630 0.00 0.00 0.00 2.40
701 711 8.908786 TCACCAAAGAGCCTATTAATATTCTG 57.091 34.615 0.00 0.00 0.00 3.02
702 712 8.713971 TCACCAAAGAGCCTATTAATATTCTGA 58.286 33.333 0.00 0.00 0.00 3.27
703 713 9.342308 CACCAAAGAGCCTATTAATATTCTGAA 57.658 33.333 0.00 0.00 0.00 3.02
704 714 9.343539 ACCAAAGAGCCTATTAATATTCTGAAC 57.656 33.333 0.00 0.00 0.00 3.18
705 715 9.566432 CCAAAGAGCCTATTAATATTCTGAACT 57.434 33.333 0.00 0.00 0.00 3.01
720 730 7.976135 ATTCTGAACTATCATTCTATGTGGC 57.024 36.000 0.00 0.00 34.37 5.01
721 731 5.532557 TCTGAACTATCATTCTATGTGGCG 58.467 41.667 0.00 0.00 34.37 5.69
722 732 5.301805 TCTGAACTATCATTCTATGTGGCGA 59.698 40.000 0.00 0.00 34.37 5.54
723 733 6.015095 TCTGAACTATCATTCTATGTGGCGAT 60.015 38.462 0.00 0.00 34.37 4.58
724 734 5.928264 TGAACTATCATTCTATGTGGCGATG 59.072 40.000 0.00 0.00 0.00 3.84
728 738 3.479489 TCATTCTATGTGGCGATGCATT 58.521 40.909 0.00 0.00 0.00 3.56
752 762 0.901580 CAGCTGGCCCAAGGATTTGT 60.902 55.000 5.57 0.00 32.21 2.83
753 763 0.178924 AGCTGGCCCAAGGATTTGTT 60.179 50.000 0.00 0.00 32.21 2.83
754 764 0.037046 GCTGGCCCAAGGATTTGTTG 60.037 55.000 0.00 0.00 32.21 3.33
817 827 4.175953 TGCCAAGCACTACTGACGAAGT 62.176 50.000 0.00 0.00 37.15 3.01
835 845 0.178990 GTTTTCAGGCAGTGGGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
836 846 0.110486 TTTTCAGGCAGTGGGAGGTC 59.890 55.000 0.00 0.00 0.00 3.85
837 847 2.111999 TTTCAGGCAGTGGGAGGTCG 62.112 60.000 0.00 0.00 0.00 4.79
838 848 2.997315 CAGGCAGTGGGAGGTCGA 60.997 66.667 0.00 0.00 0.00 4.20
843 853 1.739338 GCAGTGGGAGGTCGATCGAT 61.739 60.000 22.50 5.91 0.00 3.59
896 914 2.194212 GCCGGCCTCGTCTCTATCA 61.194 63.158 18.11 0.00 33.95 2.15
898 916 1.101635 CCGGCCTCGTCTCTATCACA 61.102 60.000 0.00 0.00 33.95 3.58
900 918 0.029567 GGCCTCGTCTCTATCACACG 59.970 60.000 0.00 0.00 34.78 4.49
901 919 0.029567 GCCTCGTCTCTATCACACGG 59.970 60.000 0.00 0.00 34.24 4.94
902 920 0.663688 CCTCGTCTCTATCACACGGG 59.336 60.000 0.00 0.00 34.24 5.28
924 971 5.523438 GCTATATATACAGCCAGGTCTCC 57.477 47.826 1.25 0.00 0.00 3.71
989 1044 2.437359 GCGGCAGAGGCAACAGAT 60.437 61.111 0.00 0.00 43.71 2.90
990 1045 1.153369 GCGGCAGAGGCAACAGATA 60.153 57.895 0.00 0.00 43.71 1.98
993 1051 0.179034 GGCAGAGGCAACAGATAGGG 60.179 60.000 0.00 0.00 43.71 3.53
1262 1338 4.452733 GTGACCGGCCGGGAAGAG 62.453 72.222 44.99 21.84 39.97 2.85
1267 1343 4.951963 CGGCCGGGAAGAGCGATC 62.952 72.222 20.10 0.00 0.00 3.69
1268 1344 4.951963 GGCCGGGAAGAGCGATCG 62.952 72.222 11.69 11.69 0.00 3.69
1269 1345 4.208686 GCCGGGAAGAGCGATCGT 62.209 66.667 17.81 3.24 0.00 3.73
1270 1346 2.494918 CCGGGAAGAGCGATCGTT 59.505 61.111 17.81 11.33 0.00 3.85
1271 1347 1.878522 CCGGGAAGAGCGATCGTTG 60.879 63.158 17.81 0.00 0.00 4.10
1272 1348 1.878522 CGGGAAGAGCGATCGTTGG 60.879 63.158 17.81 0.00 0.00 3.77
1273 1349 2.174319 GGGAAGAGCGATCGTTGGC 61.174 63.158 17.81 0.00 0.00 4.52
1274 1350 1.447838 GGAAGAGCGATCGTTGGCA 60.448 57.895 17.81 0.00 0.00 4.92
1275 1351 0.811616 GGAAGAGCGATCGTTGGCAT 60.812 55.000 17.81 0.00 0.00 4.40
1276 1352 1.538204 GGAAGAGCGATCGTTGGCATA 60.538 52.381 17.81 0.00 0.00 3.14
1277 1353 2.408050 GAAGAGCGATCGTTGGCATAT 58.592 47.619 17.81 0.00 0.00 1.78
1278 1354 2.071688 AGAGCGATCGTTGGCATATC 57.928 50.000 17.81 0.00 0.00 1.63
1279 1355 0.710567 GAGCGATCGTTGGCATATCG 59.289 55.000 17.81 17.80 44.04 2.92
1280 1356 0.032130 AGCGATCGTTGGCATATCGT 59.968 50.000 17.81 10.61 43.33 3.73
1281 1357 0.161658 GCGATCGTTGGCATATCGTG 59.838 55.000 17.81 9.31 43.33 4.35
1282 1358 0.784178 CGATCGTTGGCATATCGTGG 59.216 55.000 7.03 2.05 38.12 4.94
1288 1364 3.014036 GGCATATCGTGGCGTGTG 58.986 61.111 0.00 0.00 44.01 3.82
1289 1365 2.324477 GCATATCGTGGCGTGTGC 59.676 61.111 0.00 0.00 41.71 4.57
1290 1366 2.173669 GCATATCGTGGCGTGTGCT 61.174 57.895 0.00 0.00 42.25 4.40
1291 1367 1.705337 GCATATCGTGGCGTGTGCTT 61.705 55.000 0.00 0.00 42.25 3.91
1292 1368 0.726827 CATATCGTGGCGTGTGCTTT 59.273 50.000 0.00 0.00 42.25 3.51
1293 1369 0.726827 ATATCGTGGCGTGTGCTTTG 59.273 50.000 0.00 0.00 42.25 2.77
1294 1370 0.319986 TATCGTGGCGTGTGCTTTGA 60.320 50.000 0.00 0.00 42.25 2.69
1295 1371 1.841663 ATCGTGGCGTGTGCTTTGAC 61.842 55.000 0.00 0.00 42.25 3.18
1296 1372 2.331451 GTGGCGTGTGCTTTGACC 59.669 61.111 0.00 0.00 42.25 4.02
1297 1373 3.276091 TGGCGTGTGCTTTGACCG 61.276 61.111 0.00 0.00 42.25 4.79
1298 1374 4.683334 GGCGTGTGCTTTGACCGC 62.683 66.667 0.00 0.00 43.35 5.68
1299 1375 4.683334 GCGTGTGCTTTGACCGCC 62.683 66.667 0.00 0.00 38.52 6.13
1300 1376 2.972505 CGTGTGCTTTGACCGCCT 60.973 61.111 0.00 0.00 0.00 5.52
1301 1377 2.946762 GTGTGCTTTGACCGCCTC 59.053 61.111 0.00 0.00 0.00 4.70
1302 1378 2.664851 TGTGCTTTGACCGCCTCG 60.665 61.111 0.00 0.00 0.00 4.63
1303 1379 4.090057 GTGCTTTGACCGCCTCGC 62.090 66.667 0.00 0.00 0.00 5.03
1306 1382 2.436646 CTTTGACCGCCTCGCCAT 60.437 61.111 0.00 0.00 0.00 4.40
1307 1383 2.435938 TTTGACCGCCTCGCCATC 60.436 61.111 0.00 0.00 0.00 3.51
1308 1384 2.859273 CTTTGACCGCCTCGCCATCT 62.859 60.000 0.00 0.00 0.00 2.90
1309 1385 2.463589 TTTGACCGCCTCGCCATCTT 62.464 55.000 0.00 0.00 0.00 2.40
1310 1386 2.892425 GACCGCCTCGCCATCTTG 60.892 66.667 0.00 0.00 0.00 3.02
1311 1387 3.371097 GACCGCCTCGCCATCTTGA 62.371 63.158 0.00 0.00 0.00 3.02
1312 1388 2.109799 CCGCCTCGCCATCTTGAT 59.890 61.111 0.00 0.00 0.00 2.57
1313 1389 2.249535 CCGCCTCGCCATCTTGATG 61.250 63.158 3.77 3.77 0.00 3.07
1314 1390 1.522355 CGCCTCGCCATCTTGATGT 60.522 57.895 9.41 0.00 0.00 3.06
1315 1391 1.091771 CGCCTCGCCATCTTGATGTT 61.092 55.000 9.41 0.00 0.00 2.71
1316 1392 0.659957 GCCTCGCCATCTTGATGTTC 59.340 55.000 9.41 1.25 0.00 3.18
1317 1393 2.013563 GCCTCGCCATCTTGATGTTCA 61.014 52.381 9.41 0.00 0.00 3.18
1318 1394 2.569059 CCTCGCCATCTTGATGTTCAT 58.431 47.619 9.41 0.00 0.00 2.57
1319 1395 3.732212 CCTCGCCATCTTGATGTTCATA 58.268 45.455 9.41 0.00 0.00 2.15
1320 1396 4.129380 CCTCGCCATCTTGATGTTCATAA 58.871 43.478 9.41 0.00 0.00 1.90
1321 1397 4.758674 CCTCGCCATCTTGATGTTCATAAT 59.241 41.667 9.41 0.00 0.00 1.28
1322 1398 5.934043 CCTCGCCATCTTGATGTTCATAATA 59.066 40.000 9.41 0.00 0.00 0.98
1323 1399 6.596888 CCTCGCCATCTTGATGTTCATAATAT 59.403 38.462 9.41 0.00 0.00 1.28
1324 1400 7.120285 CCTCGCCATCTTGATGTTCATAATATT 59.880 37.037 9.41 0.00 0.00 1.28
1325 1401 8.394971 TCGCCATCTTGATGTTCATAATATTT 57.605 30.769 9.41 0.00 0.00 1.40
1326 1402 8.506437 TCGCCATCTTGATGTTCATAATATTTC 58.494 33.333 9.41 0.00 0.00 2.17
1327 1403 8.509690 CGCCATCTTGATGTTCATAATATTTCT 58.490 33.333 9.41 0.00 0.00 2.52
1328 1404 9.622004 GCCATCTTGATGTTCATAATATTTCTG 57.378 33.333 9.41 0.00 0.00 3.02
1363 1439 3.402628 TTTTTCCTCCTCTTCCTCGTG 57.597 47.619 0.00 0.00 0.00 4.35
1364 1440 2.304221 TTTCCTCCTCTTCCTCGTGA 57.696 50.000 0.00 0.00 0.00 4.35
1365 1441 2.304221 TTCCTCCTCTTCCTCGTGAA 57.696 50.000 0.00 0.00 0.00 3.18
1366 1442 2.304221 TCCTCCTCTTCCTCGTGAAA 57.696 50.000 0.00 0.00 31.06 2.69
1367 1443 2.605257 TCCTCCTCTTCCTCGTGAAAA 58.395 47.619 0.00 0.00 31.06 2.29
1368 1444 2.969950 TCCTCCTCTTCCTCGTGAAAAA 59.030 45.455 0.00 0.00 31.06 1.94
1369 1445 3.006967 TCCTCCTCTTCCTCGTGAAAAAG 59.993 47.826 0.00 0.00 31.06 2.27
1370 1446 3.244249 CCTCCTCTTCCTCGTGAAAAAGT 60.244 47.826 0.00 0.00 31.06 2.66
1371 1447 4.381411 CTCCTCTTCCTCGTGAAAAAGTT 58.619 43.478 0.00 0.00 31.06 2.66
1372 1448 4.127171 TCCTCTTCCTCGTGAAAAAGTTG 58.873 43.478 0.00 0.00 31.06 3.16
1373 1449 3.304057 CCTCTTCCTCGTGAAAAAGTTGC 60.304 47.826 0.00 0.00 31.06 4.17
1374 1450 2.616842 TCTTCCTCGTGAAAAAGTTGCC 59.383 45.455 0.00 0.00 31.06 4.52
1375 1451 2.341846 TCCTCGTGAAAAAGTTGCCT 57.658 45.000 0.00 0.00 0.00 4.75
1376 1452 2.650322 TCCTCGTGAAAAAGTTGCCTT 58.350 42.857 0.00 0.00 0.00 4.35
1377 1453 2.616842 TCCTCGTGAAAAAGTTGCCTTC 59.383 45.455 0.00 0.00 0.00 3.46
1378 1454 2.602217 CCTCGTGAAAAAGTTGCCTTCG 60.602 50.000 0.00 0.00 0.00 3.79
1379 1455 2.011222 TCGTGAAAAAGTTGCCTTCGT 58.989 42.857 0.00 0.00 0.00 3.85
1380 1456 2.420722 TCGTGAAAAAGTTGCCTTCGTT 59.579 40.909 0.00 0.00 0.00 3.85
1381 1457 3.119779 TCGTGAAAAAGTTGCCTTCGTTT 60.120 39.130 0.00 0.00 0.00 3.60
1382 1458 3.239712 CGTGAAAAAGTTGCCTTCGTTTC 59.760 43.478 0.00 0.00 32.02 2.78
1383 1459 4.421058 GTGAAAAAGTTGCCTTCGTTTCT 58.579 39.130 0.00 0.00 32.37 2.52
1384 1460 5.575019 GTGAAAAAGTTGCCTTCGTTTCTA 58.425 37.500 0.00 0.00 32.37 2.10
1385 1461 6.031471 GTGAAAAAGTTGCCTTCGTTTCTAA 58.969 36.000 0.00 0.00 32.37 2.10
1386 1462 6.695713 GTGAAAAAGTTGCCTTCGTTTCTAAT 59.304 34.615 0.00 0.00 32.37 1.73
1387 1463 7.222031 GTGAAAAAGTTGCCTTCGTTTCTAATT 59.778 33.333 0.00 0.00 32.37 1.40
1388 1464 8.407064 TGAAAAAGTTGCCTTCGTTTCTAATTA 58.593 29.630 0.00 0.00 32.37 1.40
1389 1465 9.240159 GAAAAAGTTGCCTTCGTTTCTAATTAA 57.760 29.630 0.00 0.00 30.15 1.40
1390 1466 9.758651 AAAAAGTTGCCTTCGTTTCTAATTAAT 57.241 25.926 0.00 0.00 0.00 1.40
1391 1467 9.758651 AAAAGTTGCCTTCGTTTCTAATTAATT 57.241 25.926 5.89 5.89 0.00 1.40
1392 1468 9.758651 AAAGTTGCCTTCGTTTCTAATTAATTT 57.241 25.926 5.91 0.00 0.00 1.82
1393 1469 9.758651 AAGTTGCCTTCGTTTCTAATTAATTTT 57.241 25.926 5.91 0.00 0.00 1.82
1394 1470 9.191995 AGTTGCCTTCGTTTCTAATTAATTTTG 57.808 29.630 5.91 0.60 0.00 2.44
1395 1471 8.974408 GTTGCCTTCGTTTCTAATTAATTTTGT 58.026 29.630 5.91 0.00 0.00 2.83
1396 1472 9.535878 TTGCCTTCGTTTCTAATTAATTTTGTT 57.464 25.926 5.91 0.00 0.00 2.83
1397 1473 9.187455 TGCCTTCGTTTCTAATTAATTTTGTTC 57.813 29.630 5.91 0.00 0.00 3.18
1398 1474 9.406828 GCCTTCGTTTCTAATTAATTTTGTTCT 57.593 29.630 5.91 0.00 0.00 3.01
1433 1509 9.626045 GAAATCATTCCAATAACTCGAGTTTTT 57.374 29.630 33.82 27.96 39.31 1.94
1434 1510 9.626045 AAATCATTCCAATAACTCGAGTTTTTC 57.374 29.630 33.82 0.00 39.31 2.29
1435 1511 7.141100 TCATTCCAATAACTCGAGTTTTTCC 57.859 36.000 33.82 0.00 39.31 3.13
1436 1512 6.940298 TCATTCCAATAACTCGAGTTTTTCCT 59.060 34.615 33.82 13.12 39.31 3.36
1437 1513 6.796705 TTCCAATAACTCGAGTTTTTCCTC 57.203 37.500 33.82 0.00 39.31 3.71
2149 2225 0.379669 GCCTTCATCAACAGATGCGG 59.620 55.000 0.72 5.28 39.18 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 1.300080 CAAAACAAGTGGCGCCCTG 60.300 57.895 26.77 20.59 0.00 4.45
63 65 2.575532 GCAGCAGCTGGGATTTATACA 58.424 47.619 24.13 0.00 37.91 2.29
133 135 2.724839 GCGATTTGTTCTTGTTCGCGAT 60.725 45.455 10.88 0.00 44.52 4.58
135 137 0.967803 GCGATTTGTTCTTGTTCGCG 59.032 50.000 0.00 0.00 44.52 5.87
259 268 3.308053 CAGCTGACATGAACGAGTAATGG 59.692 47.826 8.42 0.00 0.00 3.16
278 287 0.750850 TAGTTGCGAGGATACCCAGC 59.249 55.000 0.00 0.00 38.35 4.85
279 288 1.068741 GGTAGTTGCGAGGATACCCAG 59.931 57.143 0.00 0.00 33.06 4.45
283 293 1.001597 CGGAGGTAGTTGCGAGGATAC 60.002 57.143 0.00 0.00 33.40 2.24
298 308 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
299 309 5.468746 TCAAGACAAGTAATTCCAAACGGAG 59.531 40.000 0.00 0.00 32.88 4.63
300 310 5.369833 TCAAGACAAGTAATTCCAAACGGA 58.630 37.500 0.00 0.00 0.00 4.69
301 311 5.682943 TCAAGACAAGTAATTCCAAACGG 57.317 39.130 0.00 0.00 0.00 4.44
349 359 9.476202 TGTCGTAAAAATGGATGTATCTAGATG 57.524 33.333 15.79 0.00 0.00 2.90
351 361 9.529325 CTTGTCGTAAAAATGGATGTATCTAGA 57.471 33.333 0.00 0.00 0.00 2.43
352 362 9.314321 ACTTGTCGTAAAAATGGATGTATCTAG 57.686 33.333 0.00 0.00 0.00 2.43
354 364 9.661563 TTACTTGTCGTAAAAATGGATGTATCT 57.338 29.630 0.00 0.00 35.24 1.98
358 368 8.241367 GGAATTACTTGTCGTAAAAATGGATGT 58.759 33.333 0.00 0.00 41.17 3.06
359 369 7.428183 CGGAATTACTTGTCGTAAAAATGGATG 59.572 37.037 0.00 0.00 41.17 3.51
360 370 7.334921 TCGGAATTACTTGTCGTAAAAATGGAT 59.665 33.333 0.00 0.00 41.17 3.41
361 371 6.649973 TCGGAATTACTTGTCGTAAAAATGGA 59.350 34.615 0.00 0.00 41.17 3.41
362 372 6.833839 TCGGAATTACTTGTCGTAAAAATGG 58.166 36.000 0.00 0.00 41.17 3.16
363 373 7.005857 CGTTCGGAATTACTTGTCGTAAAAATG 59.994 37.037 0.00 0.00 41.17 2.32
364 374 7.011189 CGTTCGGAATTACTTGTCGTAAAAAT 58.989 34.615 0.00 0.00 41.17 1.82
365 375 6.354080 CGTTCGGAATTACTTGTCGTAAAAA 58.646 36.000 0.00 0.00 41.17 1.94
366 376 5.107530 CCGTTCGGAATTACTTGTCGTAAAA 60.108 40.000 5.19 0.00 41.17 1.52
367 377 4.385447 CCGTTCGGAATTACTTGTCGTAAA 59.615 41.667 5.19 0.00 41.17 2.01
368 378 3.919804 CCGTTCGGAATTACTTGTCGTAA 59.080 43.478 5.19 0.00 41.97 3.18
369 379 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
370 380 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
371 381 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
372 382 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
373 383 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
374 384 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
375 385 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
376 386 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
377 387 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
378 388 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
379 389 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
380 390 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
381 391 1.631405 TTTACTCCCTCCGTTCGGAA 58.369 50.000 14.79 0.04 33.41 4.30
382 392 1.547372 CTTTTACTCCCTCCGTTCGGA 59.453 52.381 13.34 13.34 0.00 4.55
383 393 1.547372 TCTTTTACTCCCTCCGTTCGG 59.453 52.381 4.74 4.74 0.00 4.30
384 394 3.308438 TTCTTTTACTCCCTCCGTTCG 57.692 47.619 0.00 0.00 0.00 3.95
385 395 5.061853 AGTTTTCTTTTACTCCCTCCGTTC 58.938 41.667 0.00 0.00 0.00 3.95
386 396 5.045012 AGTTTTCTTTTACTCCCTCCGTT 57.955 39.130 0.00 0.00 0.00 4.44
387 397 4.701651 AGTTTTCTTTTACTCCCTCCGT 57.298 40.909 0.00 0.00 0.00 4.69
388 398 5.638234 CACTAGTTTTCTTTTACTCCCTCCG 59.362 44.000 0.00 0.00 0.00 4.63
389 399 6.531923 ACACTAGTTTTCTTTTACTCCCTCC 58.468 40.000 0.00 0.00 0.00 4.30
390 400 9.722184 ATTACACTAGTTTTCTTTTACTCCCTC 57.278 33.333 0.00 0.00 0.00 4.30
391 401 9.722184 GATTACACTAGTTTTCTTTTACTCCCT 57.278 33.333 0.00 0.00 0.00 4.20
392 402 9.722184 AGATTACACTAGTTTTCTTTTACTCCC 57.278 33.333 0.00 0.00 0.00 4.30
419 429 9.689501 GCCTACTAACAAGGATAGATAGATAGT 57.310 37.037 0.00 0.00 36.08 2.12
420 430 9.688091 TGCCTACTAACAAGGATAGATAGATAG 57.312 37.037 0.00 0.00 36.08 2.08
437 447 7.230913 GTCATCATACTCCTAGTTGCCTACTAA 59.769 40.741 0.00 0.00 38.84 2.24
439 449 5.536916 GTCATCATACTCCTAGTTGCCTACT 59.463 44.000 0.00 0.00 41.04 2.57
440 450 5.279056 GGTCATCATACTCCTAGTTGCCTAC 60.279 48.000 0.00 0.00 0.00 3.18
454 464 4.896238 CGAAAAATTACGCGGTCATCATAC 59.104 41.667 12.47 0.00 0.00 2.39
457 467 2.474856 GCGAAAAATTACGCGGTCATCA 60.475 45.455 12.47 0.00 44.91 3.07
486 496 4.101119 TGAAATCCTTTTAACCCCGCAAAA 59.899 37.500 0.00 0.00 0.00 2.44
487 497 3.641906 TGAAATCCTTTTAACCCCGCAAA 59.358 39.130 0.00 0.00 0.00 3.68
488 498 3.231818 TGAAATCCTTTTAACCCCGCAA 58.768 40.909 0.00 0.00 0.00 4.85
490 500 4.180817 CAATGAAATCCTTTTAACCCCGC 58.819 43.478 0.00 0.00 0.00 6.13
491 501 4.081697 AGCAATGAAATCCTTTTAACCCCG 60.082 41.667 0.00 0.00 0.00 5.73
492 502 5.046663 TGAGCAATGAAATCCTTTTAACCCC 60.047 40.000 0.00 0.00 0.00 4.95
493 503 6.036577 TGAGCAATGAAATCCTTTTAACCC 57.963 37.500 0.00 0.00 0.00 4.11
494 504 6.368791 GGTTGAGCAATGAAATCCTTTTAACC 59.631 38.462 0.00 0.00 0.00 2.85
495 505 6.089417 CGGTTGAGCAATGAAATCCTTTTAAC 59.911 38.462 0.00 0.00 0.00 2.01
496 506 6.155827 CGGTTGAGCAATGAAATCCTTTTAA 58.844 36.000 0.00 0.00 0.00 1.52
497 507 5.242838 ACGGTTGAGCAATGAAATCCTTTTA 59.757 36.000 0.00 0.00 0.00 1.52
498 508 4.039124 ACGGTTGAGCAATGAAATCCTTTT 59.961 37.500 0.00 0.00 0.00 2.27
499 509 3.573967 ACGGTTGAGCAATGAAATCCTTT 59.426 39.130 0.00 0.00 0.00 3.11
500 510 3.157087 ACGGTTGAGCAATGAAATCCTT 58.843 40.909 0.00 0.00 0.00 3.36
501 511 2.795329 ACGGTTGAGCAATGAAATCCT 58.205 42.857 0.00 0.00 0.00 3.24
502 512 3.244976 CAACGGTTGAGCAATGAAATCC 58.755 45.455 15.66 0.00 0.00 3.01
503 513 3.057596 TCCAACGGTTGAGCAATGAAATC 60.058 43.478 21.88 0.00 0.00 2.17
504 514 2.890311 TCCAACGGTTGAGCAATGAAAT 59.110 40.909 21.88 0.00 0.00 2.17
505 515 2.302260 TCCAACGGTTGAGCAATGAAA 58.698 42.857 21.88 0.00 0.00 2.69
506 516 1.974265 TCCAACGGTTGAGCAATGAA 58.026 45.000 21.88 0.00 0.00 2.57
507 517 1.974265 TTCCAACGGTTGAGCAATGA 58.026 45.000 21.88 6.78 0.00 2.57
508 518 4.637483 ATATTCCAACGGTTGAGCAATG 57.363 40.909 21.88 4.46 0.00 2.82
509 519 4.201910 CGAATATTCCAACGGTTGAGCAAT 60.202 41.667 21.88 16.78 0.00 3.56
510 520 3.126171 CGAATATTCCAACGGTTGAGCAA 59.874 43.478 21.88 11.46 0.00 3.91
511 521 2.675844 CGAATATTCCAACGGTTGAGCA 59.324 45.455 21.88 5.83 0.00 4.26
512 522 2.676342 ACGAATATTCCAACGGTTGAGC 59.324 45.455 21.88 2.77 0.00 4.26
513 523 4.201783 GGAACGAATATTCCAACGGTTGAG 60.202 45.833 21.88 11.91 46.49 3.02
514 524 3.685756 GGAACGAATATTCCAACGGTTGA 59.314 43.478 21.88 3.53 46.49 3.18
515 525 4.011058 GGAACGAATATTCCAACGGTTG 57.989 45.455 13.86 13.86 46.49 3.77
524 534 7.656137 TGCTATGTAGGAAAGGAACGAATATTC 59.344 37.037 5.30 5.30 0.00 1.75
525 535 7.506114 TGCTATGTAGGAAAGGAACGAATATT 58.494 34.615 0.00 0.00 0.00 1.28
526 536 7.015292 TCTGCTATGTAGGAAAGGAACGAATAT 59.985 37.037 0.00 0.00 0.00 1.28
527 537 6.322969 TCTGCTATGTAGGAAAGGAACGAATA 59.677 38.462 0.00 0.00 0.00 1.75
528 538 5.128827 TCTGCTATGTAGGAAAGGAACGAAT 59.871 40.000 0.00 0.00 0.00 3.34
529 539 4.464951 TCTGCTATGTAGGAAAGGAACGAA 59.535 41.667 0.00 0.00 0.00 3.85
530 540 4.021229 TCTGCTATGTAGGAAAGGAACGA 58.979 43.478 0.00 0.00 0.00 3.85
531 541 4.363999 CTCTGCTATGTAGGAAAGGAACG 58.636 47.826 0.00 0.00 0.00 3.95
532 542 4.406003 TCCTCTGCTATGTAGGAAAGGAAC 59.594 45.833 1.58 0.00 37.86 3.62
533 543 4.620723 TCCTCTGCTATGTAGGAAAGGAA 58.379 43.478 1.58 0.00 37.86 3.36
534 544 4.265856 TCCTCTGCTATGTAGGAAAGGA 57.734 45.455 0.03 0.03 38.39 3.36
538 548 3.362706 ACGTTCCTCTGCTATGTAGGAA 58.637 45.455 0.00 0.00 45.04 3.36
539 549 2.950309 GACGTTCCTCTGCTATGTAGGA 59.050 50.000 0.00 0.00 37.64 2.94
540 550 2.952978 AGACGTTCCTCTGCTATGTAGG 59.047 50.000 0.00 0.00 0.00 3.18
541 551 3.958704 CAGACGTTCCTCTGCTATGTAG 58.041 50.000 0.00 0.00 31.57 2.74
543 553 2.949451 CAGACGTTCCTCTGCTATGT 57.051 50.000 0.00 0.00 31.57 2.29
549 559 0.389166 GACCTGCAGACGTTCCTCTG 60.389 60.000 17.39 0.00 40.73 3.35
550 560 1.536943 GGACCTGCAGACGTTCCTCT 61.537 60.000 17.39 0.00 0.00 3.69
551 561 1.079750 GGACCTGCAGACGTTCCTC 60.080 63.158 17.39 0.00 0.00 3.71
552 562 1.821061 CTGGACCTGCAGACGTTCCT 61.821 60.000 17.39 0.00 0.00 3.36
553 563 1.374758 CTGGACCTGCAGACGTTCC 60.375 63.158 17.39 15.03 0.00 3.62
554 564 0.389166 CTCTGGACCTGCAGACGTTC 60.389 60.000 17.39 4.71 0.00 3.95
555 565 1.668294 CTCTGGACCTGCAGACGTT 59.332 57.895 17.39 0.00 0.00 3.99
556 566 2.936912 GCTCTGGACCTGCAGACGT 61.937 63.158 17.39 5.08 0.00 4.34
557 567 2.125753 GCTCTGGACCTGCAGACG 60.126 66.667 17.39 1.02 0.00 4.18
558 568 2.125753 CGCTCTGGACCTGCAGAC 60.126 66.667 17.39 8.84 0.00 3.51
559 569 4.074526 GCGCTCTGGACCTGCAGA 62.075 66.667 17.39 0.00 0.00 4.26
560 570 3.889134 TTGCGCTCTGGACCTGCAG 62.889 63.158 9.73 6.78 36.83 4.41
561 571 3.939939 TTGCGCTCTGGACCTGCA 61.940 61.111 9.73 0.00 0.00 4.41
562 572 3.426568 GTTGCGCTCTGGACCTGC 61.427 66.667 9.73 0.00 0.00 4.85
563 573 2.743928 GGTTGCGCTCTGGACCTG 60.744 66.667 9.73 0.00 0.00 4.00
564 574 2.337879 TTTGGTTGCGCTCTGGACCT 62.338 55.000 9.73 0.00 33.33 3.85
565 575 1.896660 TTTGGTTGCGCTCTGGACC 60.897 57.895 9.73 9.55 0.00 4.46
566 576 1.166531 AGTTTGGTTGCGCTCTGGAC 61.167 55.000 9.73 0.36 0.00 4.02
567 577 1.148273 AGTTTGGTTGCGCTCTGGA 59.852 52.632 9.73 0.00 0.00 3.86
568 578 1.283793 CAGTTTGGTTGCGCTCTGG 59.716 57.895 9.73 0.00 0.00 3.86
569 579 1.370900 GCAGTTTGGTTGCGCTCTG 60.371 57.895 9.73 6.98 0.00 3.35
570 580 1.789078 CTGCAGTTTGGTTGCGCTCT 61.789 55.000 9.73 0.00 44.40 4.09
571 581 1.370900 CTGCAGTTTGGTTGCGCTC 60.371 57.895 9.73 1.18 44.40 5.03
572 582 1.666209 AACTGCAGTTTGGTTGCGCT 61.666 50.000 26.36 0.00 44.40 5.92
573 583 1.208642 GAACTGCAGTTTGGTTGCGC 61.209 55.000 31.58 13.57 44.40 6.09
574 584 0.929824 CGAACTGCAGTTTGGTTGCG 60.930 55.000 31.50 24.63 44.40 4.85
575 585 2.872028 CGAACTGCAGTTTGGTTGC 58.128 52.632 31.50 18.37 38.56 4.17
580 590 1.455383 AAGGGCCGAACTGCAGTTTG 61.455 55.000 31.97 31.97 38.56 2.93
581 591 1.152756 AAGGGCCGAACTGCAGTTT 60.153 52.632 31.58 16.43 38.56 2.66
582 592 1.600916 GAAGGGCCGAACTGCAGTT 60.601 57.895 31.57 31.57 41.64 3.16
583 593 2.032681 GAAGGGCCGAACTGCAGT 59.967 61.111 15.25 15.25 0.00 4.40
584 594 2.859273 ATCGAAGGGCCGAACTGCAG 62.859 60.000 13.48 13.48 42.22 4.41
585 595 2.463589 AATCGAAGGGCCGAACTGCA 62.464 55.000 0.00 0.00 42.22 4.41
586 596 1.745489 AATCGAAGGGCCGAACTGC 60.745 57.895 0.00 0.00 42.22 4.40
587 597 0.673644 ACAATCGAAGGGCCGAACTG 60.674 55.000 0.00 0.00 42.22 3.16
588 598 0.391263 GACAATCGAAGGGCCGAACT 60.391 55.000 0.00 0.00 42.22 3.01
589 599 1.366854 GGACAATCGAAGGGCCGAAC 61.367 60.000 0.00 0.00 42.22 3.95
590 600 1.078708 GGACAATCGAAGGGCCGAA 60.079 57.895 0.00 0.00 42.22 4.30
591 601 2.582436 GGACAATCGAAGGGCCGA 59.418 61.111 0.00 0.00 43.16 5.54
592 602 2.845752 TTCGGACAATCGAAGGGCCG 62.846 60.000 23.70 23.70 43.12 6.13
593 603 1.078708 TTCGGACAATCGAAGGGCC 60.079 57.895 0.00 0.00 43.12 5.80
594 604 4.609995 TTCGGACAATCGAAGGGC 57.390 55.556 0.00 0.00 43.12 5.19
598 608 3.306917 TGCTACTTTCGGACAATCGAA 57.693 42.857 0.00 0.00 45.77 3.71
599 609 3.250744 CTTGCTACTTTCGGACAATCGA 58.749 45.455 0.00 0.00 37.38 3.59
600 610 2.993899 ACTTGCTACTTTCGGACAATCG 59.006 45.455 0.00 0.00 0.00 3.34
601 611 3.746492 ACACTTGCTACTTTCGGACAATC 59.254 43.478 0.00 0.00 0.00 2.67
602 612 3.498397 CACACTTGCTACTTTCGGACAAT 59.502 43.478 0.00 0.00 0.00 2.71
603 613 2.869801 CACACTTGCTACTTTCGGACAA 59.130 45.455 0.00 0.00 0.00 3.18
604 614 2.159014 ACACACTTGCTACTTTCGGACA 60.159 45.455 0.00 0.00 0.00 4.02
605 615 2.221055 CACACACTTGCTACTTTCGGAC 59.779 50.000 0.00 0.00 0.00 4.79
606 616 2.479837 CACACACTTGCTACTTTCGGA 58.520 47.619 0.00 0.00 0.00 4.55
607 617 1.531149 CCACACACTTGCTACTTTCGG 59.469 52.381 0.00 0.00 0.00 4.30
608 618 1.069906 GCCACACACTTGCTACTTTCG 60.070 52.381 0.00 0.00 0.00 3.46
609 619 2.222027 AGCCACACACTTGCTACTTTC 58.778 47.619 0.00 0.00 32.56 2.62
610 620 2.348411 AGCCACACACTTGCTACTTT 57.652 45.000 0.00 0.00 32.56 2.66
611 621 3.139077 GTTAGCCACACACTTGCTACTT 58.861 45.455 0.00 0.00 37.33 2.24
612 622 2.104111 TGTTAGCCACACACTTGCTACT 59.896 45.455 0.00 0.00 37.33 2.57
613 623 2.489971 TGTTAGCCACACACTTGCTAC 58.510 47.619 0.00 0.00 37.33 3.58
614 624 2.875933 GTTGTTAGCCACACACTTGCTA 59.124 45.455 0.00 0.00 33.98 3.49
615 625 1.676006 GTTGTTAGCCACACACTTGCT 59.324 47.619 0.00 0.00 33.98 3.91
616 626 1.596954 CGTTGTTAGCCACACACTTGC 60.597 52.381 0.00 0.00 33.98 4.01
617 627 1.668751 ACGTTGTTAGCCACACACTTG 59.331 47.619 0.00 0.00 33.98 3.16
618 628 2.032680 ACGTTGTTAGCCACACACTT 57.967 45.000 0.00 0.00 33.98 3.16
619 629 1.937899 GAACGTTGTTAGCCACACACT 59.062 47.619 5.00 0.00 33.98 3.55
620 630 1.937899 AGAACGTTGTTAGCCACACAC 59.062 47.619 5.00 0.00 33.98 3.82
621 631 1.937223 CAGAACGTTGTTAGCCACACA 59.063 47.619 5.00 0.00 33.98 3.72
622 632 2.206750 TCAGAACGTTGTTAGCCACAC 58.793 47.619 5.00 0.00 33.98 3.82
623 633 2.605837 TCAGAACGTTGTTAGCCACA 57.394 45.000 5.00 0.00 0.00 4.17
624 634 3.120304 GGAATCAGAACGTTGTTAGCCAC 60.120 47.826 5.00 0.00 0.00 5.01
625 635 3.071479 GGAATCAGAACGTTGTTAGCCA 58.929 45.455 5.00 0.00 0.00 4.75
626 636 3.335579 AGGAATCAGAACGTTGTTAGCC 58.664 45.455 5.00 0.12 0.00 3.93
627 637 5.169295 AGTAGGAATCAGAACGTTGTTAGC 58.831 41.667 5.00 0.00 0.00 3.09
628 638 7.811236 TGTAAGTAGGAATCAGAACGTTGTTAG 59.189 37.037 5.00 0.00 0.00 2.34
629 639 7.660112 TGTAAGTAGGAATCAGAACGTTGTTA 58.340 34.615 5.00 0.00 0.00 2.41
630 640 6.518493 TGTAAGTAGGAATCAGAACGTTGTT 58.482 36.000 5.00 0.00 0.00 2.83
631 641 6.092955 TGTAAGTAGGAATCAGAACGTTGT 57.907 37.500 5.00 0.00 0.00 3.32
632 642 6.811665 TCATGTAAGTAGGAATCAGAACGTTG 59.188 38.462 5.00 0.00 0.00 4.10
633 643 6.931838 TCATGTAAGTAGGAATCAGAACGTT 58.068 36.000 0.00 0.00 0.00 3.99
634 644 6.525578 TCATGTAAGTAGGAATCAGAACGT 57.474 37.500 0.00 0.00 0.00 3.99
635 645 5.460419 GCTCATGTAAGTAGGAATCAGAACG 59.540 44.000 0.00 0.00 0.00 3.95
636 646 6.341316 TGCTCATGTAAGTAGGAATCAGAAC 58.659 40.000 0.00 0.00 0.00 3.01
637 647 6.544928 TGCTCATGTAAGTAGGAATCAGAA 57.455 37.500 0.00 0.00 0.00 3.02
638 648 6.544928 TTGCTCATGTAAGTAGGAATCAGA 57.455 37.500 0.00 0.00 0.00 3.27
639 649 8.363390 TCTATTGCTCATGTAAGTAGGAATCAG 58.637 37.037 2.06 1.03 33.89 2.90
640 650 8.250143 TCTATTGCTCATGTAAGTAGGAATCA 57.750 34.615 2.06 0.00 33.89 2.57
641 651 8.580720 TCTCTATTGCTCATGTAAGTAGGAATC 58.419 37.037 2.06 0.00 33.89 2.52
642 652 8.484214 TCTCTATTGCTCATGTAAGTAGGAAT 57.516 34.615 4.04 4.04 35.72 3.01
643 653 7.898014 TCTCTATTGCTCATGTAAGTAGGAA 57.102 36.000 0.00 0.00 0.00 3.36
644 654 9.760926 ATATCTCTATTGCTCATGTAAGTAGGA 57.239 33.333 0.00 0.00 0.00 2.94
672 682 9.920946 AATATTAATAGGCTCTTTGGTGAAAGA 57.079 29.630 1.02 0.00 44.40 2.52
674 684 9.920946 AGAATATTAATAGGCTCTTTGGTGAAA 57.079 29.630 1.02 0.00 0.00 2.69
675 685 9.342308 CAGAATATTAATAGGCTCTTTGGTGAA 57.658 33.333 1.02 0.00 0.00 3.18
676 686 8.713971 TCAGAATATTAATAGGCTCTTTGGTGA 58.286 33.333 1.02 0.00 0.00 4.02
677 687 8.908786 TCAGAATATTAATAGGCTCTTTGGTG 57.091 34.615 1.02 0.00 0.00 4.17
678 688 9.343539 GTTCAGAATATTAATAGGCTCTTTGGT 57.656 33.333 1.02 0.00 0.00 3.67
679 689 9.566432 AGTTCAGAATATTAATAGGCTCTTTGG 57.434 33.333 1.02 0.00 0.00 3.28
694 704 9.664332 GCCACATAGAATGATAGTTCAGAATAT 57.336 33.333 0.00 0.00 34.73 1.28
695 705 7.814587 CGCCACATAGAATGATAGTTCAGAATA 59.185 37.037 0.00 0.00 34.73 1.75
696 706 6.648310 CGCCACATAGAATGATAGTTCAGAAT 59.352 38.462 0.00 0.00 34.73 2.40
697 707 5.985530 CGCCACATAGAATGATAGTTCAGAA 59.014 40.000 0.00 0.00 34.73 3.02
698 708 5.301805 TCGCCACATAGAATGATAGTTCAGA 59.698 40.000 0.00 0.00 34.73 3.27
699 709 5.532557 TCGCCACATAGAATGATAGTTCAG 58.467 41.667 0.00 0.00 34.73 3.02
700 710 5.529581 TCGCCACATAGAATGATAGTTCA 57.470 39.130 0.00 0.00 36.00 3.18
701 711 5.163913 GCATCGCCACATAGAATGATAGTTC 60.164 44.000 0.00 0.00 0.00 3.01
702 712 4.692625 GCATCGCCACATAGAATGATAGTT 59.307 41.667 0.00 0.00 0.00 2.24
703 713 4.248859 GCATCGCCACATAGAATGATAGT 58.751 43.478 0.00 0.00 0.00 2.12
704 714 4.248058 TGCATCGCCACATAGAATGATAG 58.752 43.478 0.00 0.00 0.00 2.08
705 715 4.270245 TGCATCGCCACATAGAATGATA 57.730 40.909 0.00 0.00 0.00 2.15
706 716 3.130280 TGCATCGCCACATAGAATGAT 57.870 42.857 0.00 0.00 0.00 2.45
707 717 2.618442 TGCATCGCCACATAGAATGA 57.382 45.000 0.00 0.00 0.00 2.57
708 718 3.004002 ACAATGCATCGCCACATAGAATG 59.996 43.478 0.00 0.00 0.00 2.67
709 719 3.216800 ACAATGCATCGCCACATAGAAT 58.783 40.909 0.00 0.00 0.00 2.40
710 720 2.613595 GACAATGCATCGCCACATAGAA 59.386 45.455 0.00 0.00 0.00 2.10
711 721 2.158914 AGACAATGCATCGCCACATAGA 60.159 45.455 0.00 0.00 0.00 1.98
712 722 2.216046 AGACAATGCATCGCCACATAG 58.784 47.619 0.00 0.00 0.00 2.23
713 723 2.212652 GAGACAATGCATCGCCACATA 58.787 47.619 0.00 0.00 0.00 2.29
714 724 1.019673 GAGACAATGCATCGCCACAT 58.980 50.000 0.00 0.00 0.00 3.21
715 725 0.321475 TGAGACAATGCATCGCCACA 60.321 50.000 0.00 0.00 0.00 4.17
716 726 0.376152 CTGAGACAATGCATCGCCAC 59.624 55.000 0.00 0.00 0.00 5.01
717 727 1.371337 GCTGAGACAATGCATCGCCA 61.371 55.000 0.00 0.00 0.00 5.69
718 728 1.094073 AGCTGAGACAATGCATCGCC 61.094 55.000 0.00 0.00 0.00 5.54
719 729 0.027716 CAGCTGAGACAATGCATCGC 59.972 55.000 8.42 0.00 0.00 4.58
720 730 0.656259 CCAGCTGAGACAATGCATCG 59.344 55.000 17.39 0.00 0.00 3.84
721 731 0.381089 GCCAGCTGAGACAATGCATC 59.619 55.000 17.39 0.00 0.00 3.91
722 732 1.035932 GGCCAGCTGAGACAATGCAT 61.036 55.000 17.39 0.00 0.00 3.96
723 733 1.676635 GGCCAGCTGAGACAATGCA 60.677 57.895 17.39 0.00 0.00 3.96
724 734 2.413142 GGGCCAGCTGAGACAATGC 61.413 63.158 17.39 7.88 0.00 3.56
728 738 2.752358 CTTGGGCCAGCTGAGACA 59.248 61.111 17.39 7.72 0.00 3.41
752 762 3.401033 TCTTCTCCTTTCATCGTGCAA 57.599 42.857 0.00 0.00 0.00 4.08
753 763 3.401033 TTCTTCTCCTTTCATCGTGCA 57.599 42.857 0.00 0.00 0.00 4.57
754 764 6.425504 CATTATTCTTCTCCTTTCATCGTGC 58.574 40.000 0.00 0.00 0.00 5.34
817 827 0.110486 GACCTCCCACTGCCTGAAAA 59.890 55.000 0.00 0.00 0.00 2.29
838 848 6.038161 GGTATGATTGAGAGAGATCGATCGAT 59.962 42.308 29.76 29.76 41.32 3.59
843 853 4.390264 ACGGTATGATTGAGAGAGATCGA 58.610 43.478 0.00 0.00 0.00 3.59
902 920 5.523438 GGAGACCTGGCTGTATATATAGC 57.477 47.826 20.06 20.06 39.38 2.97
989 1044 1.075698 GATCCCTCATCGTCTCCCCTA 59.924 57.143 0.00 0.00 0.00 3.53
990 1045 0.178947 GATCCCTCATCGTCTCCCCT 60.179 60.000 0.00 0.00 0.00 4.79
993 1051 0.965439 CCAGATCCCTCATCGTCTCC 59.035 60.000 0.00 0.00 36.50 3.71
1257 1333 1.852942 TATGCCAACGATCGCTCTTC 58.147 50.000 16.60 1.47 0.00 2.87
1258 1334 2.408050 GATATGCCAACGATCGCTCTT 58.592 47.619 16.60 0.00 0.00 2.85
1259 1335 1.667177 CGATATGCCAACGATCGCTCT 60.667 52.381 16.60 0.00 36.41 4.09
1260 1336 0.710567 CGATATGCCAACGATCGCTC 59.289 55.000 16.60 2.23 36.41 5.03
1261 1337 0.032130 ACGATATGCCAACGATCGCT 59.968 50.000 16.60 0.00 44.90 4.93
1262 1338 0.161658 CACGATATGCCAACGATCGC 59.838 55.000 16.60 0.00 44.90 4.58
1263 1339 0.784178 CCACGATATGCCAACGATCG 59.216 55.000 14.88 14.88 46.12 3.69
1264 1340 0.512952 GCCACGATATGCCAACGATC 59.487 55.000 0.00 0.00 0.00 3.69
1265 1341 1.221466 CGCCACGATATGCCAACGAT 61.221 55.000 0.00 0.00 0.00 3.73
1266 1342 1.880796 CGCCACGATATGCCAACGA 60.881 57.895 0.00 0.00 0.00 3.85
1267 1343 2.171079 ACGCCACGATATGCCAACG 61.171 57.895 0.00 0.00 0.00 4.10
1268 1344 1.351707 CACGCCACGATATGCCAAC 59.648 57.895 0.00 0.00 0.00 3.77
1269 1345 1.078778 ACACGCCACGATATGCCAA 60.079 52.632 0.00 0.00 0.00 4.52
1270 1346 1.813337 CACACGCCACGATATGCCA 60.813 57.895 0.00 0.00 0.00 4.92
1271 1347 3.014036 CACACGCCACGATATGCC 58.986 61.111 0.00 0.00 0.00 4.40
1272 1348 1.705337 AAGCACACGCCACGATATGC 61.705 55.000 0.00 0.65 39.83 3.14
1273 1349 0.726827 AAAGCACACGCCACGATATG 59.273 50.000 0.00 0.00 39.83 1.78
1274 1350 0.726827 CAAAGCACACGCCACGATAT 59.273 50.000 0.00 0.00 39.83 1.63
1275 1351 0.319986 TCAAAGCACACGCCACGATA 60.320 50.000 0.00 0.00 39.83 2.92
1276 1352 1.596752 TCAAAGCACACGCCACGAT 60.597 52.632 0.00 0.00 39.83 3.73
1277 1353 2.202946 TCAAAGCACACGCCACGA 60.203 55.556 0.00 0.00 39.83 4.35
1278 1354 2.052237 GTCAAAGCACACGCCACG 60.052 61.111 0.00 0.00 39.83 4.94
1279 1355 2.331451 GGTCAAAGCACACGCCAC 59.669 61.111 0.00 0.00 39.83 5.01
1280 1356 3.276091 CGGTCAAAGCACACGCCA 61.276 61.111 0.00 0.00 39.83 5.69
1281 1357 4.683334 GCGGTCAAAGCACACGCC 62.683 66.667 0.00 0.00 44.01 5.68
1283 1359 2.954753 GAGGCGGTCAAAGCACACG 61.955 63.158 0.00 0.00 36.08 4.49
1284 1360 2.946762 GAGGCGGTCAAAGCACAC 59.053 61.111 0.00 0.00 36.08 3.82
1285 1361 2.664851 CGAGGCGGTCAAAGCACA 60.665 61.111 0.00 0.00 36.08 4.57
1286 1362 4.090057 GCGAGGCGGTCAAAGCAC 62.090 66.667 0.00 0.00 36.08 4.40
1289 1365 2.436646 ATGGCGAGGCGGTCAAAG 60.437 61.111 0.00 0.00 0.00 2.77
1290 1366 2.435938 GATGGCGAGGCGGTCAAA 60.436 61.111 0.00 0.00 0.00 2.69
1291 1367 2.954684 AAGATGGCGAGGCGGTCAA 61.955 57.895 0.00 0.00 0.00 3.18
1292 1368 3.390521 AAGATGGCGAGGCGGTCA 61.391 61.111 0.00 0.00 0.00 4.02
1293 1369 2.650813 ATCAAGATGGCGAGGCGGTC 62.651 60.000 0.00 0.00 0.00 4.79
1294 1370 2.735772 ATCAAGATGGCGAGGCGGT 61.736 57.895 0.00 0.00 0.00 5.68
1295 1371 2.109799 ATCAAGATGGCGAGGCGG 59.890 61.111 0.00 0.00 0.00 6.13
1296 1372 1.091771 AACATCAAGATGGCGAGGCG 61.092 55.000 14.04 0.00 42.91 5.52
1297 1373 0.659957 GAACATCAAGATGGCGAGGC 59.340 55.000 14.04 0.00 42.91 4.70
1298 1374 2.028420 TGAACATCAAGATGGCGAGG 57.972 50.000 14.04 0.00 42.91 4.63
1299 1375 5.936686 ATTATGAACATCAAGATGGCGAG 57.063 39.130 14.04 0.00 42.91 5.03
1300 1376 7.984422 AATATTATGAACATCAAGATGGCGA 57.016 32.000 14.04 0.00 42.91 5.54
1301 1377 8.509690 AGAAATATTATGAACATCAAGATGGCG 58.490 33.333 14.04 0.00 42.91 5.69
1302 1378 9.622004 CAGAAATATTATGAACATCAAGATGGC 57.378 33.333 14.04 6.62 42.91 4.40
1343 1419 2.969950 TCACGAGGAAGAGGAGGAAAAA 59.030 45.455 0.00 0.00 0.00 1.94
1344 1420 2.605257 TCACGAGGAAGAGGAGGAAAA 58.395 47.619 0.00 0.00 0.00 2.29
1345 1421 2.304221 TCACGAGGAAGAGGAGGAAA 57.696 50.000 0.00 0.00 0.00 3.13
1346 1422 2.304221 TTCACGAGGAAGAGGAGGAA 57.696 50.000 0.00 0.00 0.00 3.36
1347 1423 2.304221 TTTCACGAGGAAGAGGAGGA 57.696 50.000 0.00 0.00 36.72 3.71
1348 1424 3.244249 ACTTTTTCACGAGGAAGAGGAGG 60.244 47.826 0.00 0.00 36.72 4.30
1349 1425 3.996480 ACTTTTTCACGAGGAAGAGGAG 58.004 45.455 0.00 0.00 36.72 3.69
1350 1426 4.127171 CAACTTTTTCACGAGGAAGAGGA 58.873 43.478 0.00 0.00 36.72 3.71
1351 1427 3.304057 GCAACTTTTTCACGAGGAAGAGG 60.304 47.826 0.00 0.00 36.72 3.69
1352 1428 3.304057 GGCAACTTTTTCACGAGGAAGAG 60.304 47.826 0.00 0.00 36.72 2.85
1353 1429 2.616842 GGCAACTTTTTCACGAGGAAGA 59.383 45.455 0.00 0.00 36.72 2.87
1354 1430 3.000082 GGCAACTTTTTCACGAGGAAG 58.000 47.619 0.00 0.00 36.72 3.46
1369 1445 8.974408 ACAAAATTAATTAGAAACGAAGGCAAC 58.026 29.630 0.01 0.00 0.00 4.17
1370 1446 9.535878 AACAAAATTAATTAGAAACGAAGGCAA 57.464 25.926 0.01 0.00 0.00 4.52
1371 1447 9.187455 GAACAAAATTAATTAGAAACGAAGGCA 57.813 29.630 0.01 0.00 0.00 4.75
1372 1448 9.406828 AGAACAAAATTAATTAGAAACGAAGGC 57.593 29.630 0.01 0.00 0.00 4.35
1391 1467 9.927668 GGAATGATTTCCTTTCATAAGAACAAA 57.072 29.630 0.00 0.00 46.80 2.83
1404 1480 7.611855 AACTCGAGTTATTGGAATGATTTCCTT 59.388 33.333 28.80 0.00 43.10 3.36
1405 1481 7.112779 AACTCGAGTTATTGGAATGATTTCCT 58.887 34.615 28.80 0.00 43.10 3.36
1406 1482 7.321745 AACTCGAGTTATTGGAATGATTTCC 57.678 36.000 28.80 0.00 43.04 3.13
1407 1483 9.626045 AAAAACTCGAGTTATTGGAATGATTTC 57.374 29.630 29.91 0.00 37.25 2.17
1408 1484 9.626045 GAAAAACTCGAGTTATTGGAATGATTT 57.374 29.630 29.91 20.80 37.25 2.17
1409 1485 8.244113 GGAAAAACTCGAGTTATTGGAATGATT 58.756 33.333 29.91 14.02 37.25 2.57
1410 1486 7.611855 AGGAAAAACTCGAGTTATTGGAATGAT 59.388 33.333 29.91 8.55 37.25 2.45
1411 1487 6.940298 AGGAAAAACTCGAGTTATTGGAATGA 59.060 34.615 29.91 0.00 37.25 2.57
1412 1488 7.145932 AGGAAAAACTCGAGTTATTGGAATG 57.854 36.000 29.91 0.00 37.25 2.67
1413 1489 7.379098 GAGGAAAAACTCGAGTTATTGGAAT 57.621 36.000 29.91 10.81 37.25 3.01
1414 1490 6.796705 GAGGAAAAACTCGAGTTATTGGAA 57.203 37.500 29.91 0.00 37.25 3.53
1440 1516 2.631267 CCCACATGACAATGATCGTCA 58.369 47.619 0.00 4.66 46.77 4.35
1441 1517 1.942657 CCCCACATGACAATGATCGTC 59.057 52.381 0.00 0.00 37.24 4.20
1442 1518 2.018644 GCCCCACATGACAATGATCGT 61.019 52.381 0.00 0.00 37.24 3.73
1443 1519 0.664761 GCCCCACATGACAATGATCG 59.335 55.000 0.00 0.00 37.24 3.69
1444 1520 1.406539 GTGCCCCACATGACAATGATC 59.593 52.381 0.00 0.00 37.24 2.92
1445 1521 1.477553 GTGCCCCACATGACAATGAT 58.522 50.000 0.00 0.00 37.24 2.45
1446 1522 0.959867 CGTGCCCCACATGACAATGA 60.960 55.000 0.00 0.00 37.49 2.57
1447 1523 1.243342 ACGTGCCCCACATGACAATG 61.243 55.000 0.00 0.00 38.75 2.82
2149 2225 2.484264 CGTTGTTGATGGAAGAAGGACC 59.516 50.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.