Multiple sequence alignment - TraesCS4A01G364400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G364400 chr4A 100.000 4972 0 0 1 4972 637919996 637924967 0.000000e+00 9182.0
1 TraesCS4A01G364400 chr4A 99.827 578 1 0 4395 4972 210984977 210985554 0.000000e+00 1062.0
2 TraesCS4A01G364400 chr5B 91.346 2519 159 34 1826 4321 674270450 674267968 0.000000e+00 3389.0
3 TraesCS4A01G364400 chr5B 100.000 576 0 0 4397 4972 375662920 375662345 0.000000e+00 1064.0
4 TraesCS4A01G364400 chr5B 83.134 836 60 37 770 1546 674271407 674270594 0.000000e+00 688.0
5 TraesCS4A01G364400 chr5B 78.540 685 118 26 2684 3353 65188666 65189336 1.650000e-114 424.0
6 TraesCS4A01G364400 chr5B 87.805 164 20 0 3809 3972 65189553 65189716 5.080000e-45 193.0
7 TraesCS4A01G364400 chr5B 91.919 99 8 0 1178 1276 65185860 65185958 6.710000e-29 139.0
8 TraesCS4A01G364400 chr5D 94.532 1957 99 6 1737 3689 534007409 534005457 0.000000e+00 3014.0
9 TraesCS4A01G364400 chr5D 93.475 705 41 4 36 738 431560209 431559508 0.000000e+00 1042.0
10 TraesCS4A01G364400 chr5D 85.593 826 51 29 769 1546 534008297 534007492 0.000000e+00 804.0
11 TraesCS4A01G364400 chr5D 78.624 683 125 19 2684 3353 65904794 65904120 2.750000e-117 433.0
12 TraesCS4A01G364400 chr5D 88.076 369 31 8 3959 4324 534005128 534004770 4.600000e-115 425.0
13 TraesCS4A01G364400 chr5D 91.623 191 15 1 3809 3999 534005317 534005128 3.820000e-66 263.0
14 TraesCS4A01G364400 chr5D 80.672 238 37 6 3809 4040 65904028 65903794 5.120000e-40 176.0
15 TraesCS4A01G364400 chr3D 93.646 724 36 6 36 757 304905975 304905260 0.000000e+00 1074.0
16 TraesCS4A01G364400 chr3D 90.000 50 1 1 728 773 368880697 368880746 1.490000e-05 62.1
17 TraesCS4A01G364400 chr7D 93.398 727 42 4 36 757 110587430 110588155 0.000000e+00 1072.0
18 TraesCS4A01G364400 chr7D 92.493 706 41 8 36 738 565209158 565209854 0.000000e+00 1000.0
19 TraesCS4A01G364400 chr7D 92.683 697 38 7 36 730 83806047 83805362 0.000000e+00 992.0
20 TraesCS4A01G364400 chr7D 93.370 181 9 2 1571 1749 381797778 381797957 1.060000e-66 265.0
21 TraesCS4A01G364400 chr7D 93.785 177 9 1 1584 1758 459392090 459391914 1.060000e-66 265.0
22 TraesCS4A01G364400 chr7D 89.583 48 1 1 728 771 159700851 159700804 1.930000e-04 58.4
23 TraesCS4A01G364400 chrUn 100.000 577 0 0 4396 4972 49783968 49783392 0.000000e+00 1066.0
24 TraesCS4A01G364400 chr4B 100.000 577 0 0 4396 4972 18256910 18256334 0.000000e+00 1066.0
25 TraesCS4A01G364400 chr7A 100.000 576 0 0 4397 4972 229021553 229022128 0.000000e+00 1064.0
26 TraesCS4A01G364400 chr7A 99.827 577 1 0 4396 4972 730476584 730476008 0.000000e+00 1061.0
27 TraesCS4A01G364400 chr7A 99.317 586 2 2 4387 4972 43517613 43518196 0.000000e+00 1059.0
28 TraesCS4A01G364400 chr5A 100.000 576 0 0 4397 4972 609263844 609264419 0.000000e+00 1064.0
29 TraesCS4A01G364400 chr5A 78.382 680 125 17 2684 3353 55162684 55162017 5.950000e-114 422.0
30 TraesCS4A01G364400 chr5A 87.805 164 20 0 3809 3972 55161925 55161762 5.080000e-45 193.0
31 TraesCS4A01G364400 chr5A 88.596 114 13 0 1178 1291 55165544 55165431 6.710000e-29 139.0
32 TraesCS4A01G364400 chr5A 100.000 31 0 0 728 758 110351507 110351537 1.930000e-04 58.4
33 TraesCS4A01G364400 chr5A 85.000 60 4 1 719 773 309271673 309271732 6.950000e-04 56.5
34 TraesCS4A01G364400 chr3A 100.000 576 0 0 4397 4972 301773755 301773180 0.000000e+00 1064.0
35 TraesCS4A01G364400 chr3A 90.483 704 59 6 36 737 137612874 137612177 0.000000e+00 922.0
36 TraesCS4A01G364400 chr1D 92.466 730 41 6 36 757 324705057 324705780 0.000000e+00 1031.0
37 TraesCS4A01G364400 chr1D 94.350 177 7 2 1576 1750 238940389 238940214 8.200000e-68 268.0
38 TraesCS4A01G364400 chr1D 93.370 181 10 1 1571 1749 331539444 331539264 2.950000e-67 267.0
39 TraesCS4A01G364400 chr4D 93.286 700 40 5 41 738 476862944 476862250 0.000000e+00 1026.0
40 TraesCS4A01G364400 chr6D 89.684 727 70 3 36 757 87470636 87471362 0.000000e+00 922.0
41 TraesCS4A01G364400 chr2B 95.858 169 5 1 1586 1752 174794822 174794990 6.340000e-69 272.0
42 TraesCS4A01G364400 chr2B 82.927 164 28 0 3809 3972 116849251 116849088 1.120000e-31 148.0
43 TraesCS4A01G364400 chr2A 95.858 169 5 1 1583 1749 746756987 746757155 6.340000e-69 272.0
44 TraesCS4A01G364400 chr1B 93.407 182 10 1 1573 1752 628050864 628050683 8.200000e-68 268.0
45 TraesCS4A01G364400 chr2D 91.837 196 9 6 1560 1750 516708285 516708478 2.950000e-67 267.0
46 TraesCS4A01G364400 chr1A 92.350 183 12 2 1572 1752 377500408 377500226 4.940000e-65 259.0
47 TraesCS4A01G364400 chr1A 84.848 66 3 2 716 774 523005970 523006035 5.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G364400 chr4A 637919996 637924967 4971 False 9182.000000 9182 100.000000 1 4972 1 chr4A.!!$F2 4971
1 TraesCS4A01G364400 chr4A 210984977 210985554 577 False 1062.000000 1062 99.827000 4395 4972 1 chr4A.!!$F1 577
2 TraesCS4A01G364400 chr5B 674267968 674271407 3439 True 2038.500000 3389 87.240000 770 4321 2 chr5B.!!$R2 3551
3 TraesCS4A01G364400 chr5B 375662345 375662920 575 True 1064.000000 1064 100.000000 4397 4972 1 chr5B.!!$R1 575
4 TraesCS4A01G364400 chr5B 65185860 65189716 3856 False 252.000000 424 86.088000 1178 3972 3 chr5B.!!$F1 2794
5 TraesCS4A01G364400 chr5D 534004770 534008297 3527 True 1126.500000 3014 89.956000 769 4324 4 chr5D.!!$R3 3555
6 TraesCS4A01G364400 chr5D 431559508 431560209 701 True 1042.000000 1042 93.475000 36 738 1 chr5D.!!$R1 702
7 TraesCS4A01G364400 chr5D 65903794 65904794 1000 True 304.500000 433 79.648000 2684 4040 2 chr5D.!!$R2 1356
8 TraesCS4A01G364400 chr3D 304905260 304905975 715 True 1074.000000 1074 93.646000 36 757 1 chr3D.!!$R1 721
9 TraesCS4A01G364400 chr7D 110587430 110588155 725 False 1072.000000 1072 93.398000 36 757 1 chr7D.!!$F1 721
10 TraesCS4A01G364400 chr7D 565209158 565209854 696 False 1000.000000 1000 92.493000 36 738 1 chr7D.!!$F3 702
11 TraesCS4A01G364400 chr7D 83805362 83806047 685 True 992.000000 992 92.683000 36 730 1 chr7D.!!$R1 694
12 TraesCS4A01G364400 chrUn 49783392 49783968 576 True 1066.000000 1066 100.000000 4396 4972 1 chrUn.!!$R1 576
13 TraesCS4A01G364400 chr4B 18256334 18256910 576 True 1066.000000 1066 100.000000 4396 4972 1 chr4B.!!$R1 576
14 TraesCS4A01G364400 chr7A 229021553 229022128 575 False 1064.000000 1064 100.000000 4397 4972 1 chr7A.!!$F2 575
15 TraesCS4A01G364400 chr7A 730476008 730476584 576 True 1061.000000 1061 99.827000 4396 4972 1 chr7A.!!$R1 576
16 TraesCS4A01G364400 chr7A 43517613 43518196 583 False 1059.000000 1059 99.317000 4387 4972 1 chr7A.!!$F1 585
17 TraesCS4A01G364400 chr5A 609263844 609264419 575 False 1064.000000 1064 100.000000 4397 4972 1 chr5A.!!$F3 575
18 TraesCS4A01G364400 chr5A 55161762 55165544 3782 True 251.333333 422 84.927667 1178 3972 3 chr5A.!!$R1 2794
19 TraesCS4A01G364400 chr3A 301773180 301773755 575 True 1064.000000 1064 100.000000 4397 4972 1 chr3A.!!$R2 575
20 TraesCS4A01G364400 chr3A 137612177 137612874 697 True 922.000000 922 90.483000 36 737 1 chr3A.!!$R1 701
21 TraesCS4A01G364400 chr1D 324705057 324705780 723 False 1031.000000 1031 92.466000 36 757 1 chr1D.!!$F1 721
22 TraesCS4A01G364400 chr4D 476862250 476862944 694 True 1026.000000 1026 93.286000 41 738 1 chr4D.!!$R1 697
23 TraesCS4A01G364400 chr6D 87470636 87471362 726 False 922.000000 922 89.684000 36 757 1 chr6D.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 795 0.110486 AAATGGGTCGCTGGAGTTGT 59.890 50.0 0.0 0.0 0.0 3.32 F
1975 3761 0.250513 ATGGAGTTGGGACGAAGCTC 59.749 55.0 0.0 0.0 0.0 4.09 F
2540 4340 0.778815 CGACGAAGTTGACTCACAGC 59.221 55.0 0.0 0.0 47.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2521 4321 0.778815 GCTGTGAGTCAACTTCGTCG 59.221 55.0 0.00 0.0 0.0 5.12 R
3830 5829 0.319469 TGAACGTTCGCAGCATCTCA 60.319 50.0 22.48 0.0 0.0 3.27 R
4391 6446 0.107017 CCGAGGCCCTTGACAATCAT 60.107 55.0 0.00 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.885644 CGTTGAGGTCGATGGGCG 60.886 66.667 0.00 0.00 42.69 6.13
18 19 3.195698 GTTGAGGTCGATGGGCGC 61.196 66.667 0.00 0.00 40.61 6.53
19 20 4.812476 TTGAGGTCGATGGGCGCG 62.812 66.667 0.00 0.00 40.61 6.86
76 77 2.027024 GCGACCACACTCACGTCA 59.973 61.111 0.00 0.00 0.00 4.35
126 127 3.003113 GCGGGTAGACGTGGAAGCT 62.003 63.158 0.00 0.00 35.98 3.74
235 236 1.227853 GGCTTGGAGGACGTTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
460 471 2.751837 CGAGGCTTGCCTTTCCCC 60.752 66.667 15.92 1.54 0.00 4.81
542 559 1.756561 TCGATGGCGTCCTCCATGA 60.757 57.895 0.14 0.00 46.29 3.07
549 566 0.535335 GCGTCCTCCATGACTGGTTA 59.465 55.000 0.00 0.00 43.61 2.85
556 574 1.602237 CATGACTGGTTAGGGGCGT 59.398 57.895 0.00 0.00 0.00 5.68
597 616 1.628340 GTTTTGGGGGAAAATGGAGGG 59.372 52.381 0.00 0.00 35.96 4.30
643 663 3.471806 GGCCCGGGGAGAGAAGTC 61.472 72.222 25.28 0.66 0.00 3.01
646 670 2.362632 CCGGGGAGAGAAGTCGGT 60.363 66.667 0.00 0.00 36.38 4.69
699 729 4.443063 CGACGCATATCCGACTCAAAATTA 59.557 41.667 0.00 0.00 0.00 1.40
705 735 6.464222 CATATCCGACTCAAAATTAGGCCTA 58.536 40.000 8.91 8.91 0.00 3.93
730 760 3.652000 TCGCCCGCGGACAAAAAC 61.652 61.111 30.73 5.54 40.25 2.43
735 765 2.127906 CGCGGACAAAAACGGACG 60.128 61.111 0.00 0.00 0.00 4.79
736 766 2.426261 GCGGACAAAAACGGACGC 60.426 61.111 0.00 0.00 40.19 5.19
737 767 2.127906 CGGACAAAAACGGACGCG 60.128 61.111 3.53 3.53 0.00 6.01
738 768 2.250190 GGACAAAAACGGACGCGG 59.750 61.111 12.47 0.00 0.00 6.46
739 769 2.250190 GACAAAAACGGACGCGGG 59.750 61.111 12.47 1.02 0.00 6.13
740 770 3.867226 GACAAAAACGGACGCGGGC 62.867 63.158 12.47 0.92 0.00 6.13
753 783 4.770874 CGGGCGGACGAAATGGGT 62.771 66.667 0.00 0.00 35.47 4.51
754 784 2.822701 GGGCGGACGAAATGGGTC 60.823 66.667 0.00 0.00 0.00 4.46
755 785 3.192922 GGCGGACGAAATGGGTCG 61.193 66.667 0.00 0.00 46.54 4.79
756 786 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
757 787 2.125673 CGGACGAAATGGGTCGCT 60.126 61.111 0.00 0.00 45.00 4.93
758 788 2.452813 CGGACGAAATGGGTCGCTG 61.453 63.158 0.00 0.00 45.00 5.18
759 789 2.106683 GGACGAAATGGGTCGCTGG 61.107 63.158 0.00 0.00 45.00 4.85
760 790 1.079405 GACGAAATGGGTCGCTGGA 60.079 57.895 0.00 0.00 45.00 3.86
761 791 1.079127 ACGAAATGGGTCGCTGGAG 60.079 57.895 0.00 0.00 45.00 3.86
762 792 1.079127 CGAAATGGGTCGCTGGAGT 60.079 57.895 0.00 0.00 33.66 3.85
763 793 0.673644 CGAAATGGGTCGCTGGAGTT 60.674 55.000 0.00 0.00 33.66 3.01
764 794 0.804989 GAAATGGGTCGCTGGAGTTG 59.195 55.000 0.00 0.00 0.00 3.16
765 795 0.110486 AAATGGGTCGCTGGAGTTGT 59.890 50.000 0.00 0.00 0.00 3.32
766 796 0.110486 AATGGGTCGCTGGAGTTGTT 59.890 50.000 0.00 0.00 0.00 2.83
767 797 0.321653 ATGGGTCGCTGGAGTTGTTC 60.322 55.000 0.00 0.00 0.00 3.18
777 807 3.251004 GCTGGAGTTGTTCTAAGTGTTGG 59.749 47.826 0.00 0.00 0.00 3.77
778 808 3.211045 TGGAGTTGTTCTAAGTGTTGGC 58.789 45.455 0.00 0.00 0.00 4.52
804 834 7.463515 CGTTTTAGTTCAAATGAAACCACAACC 60.464 37.037 0.23 0.00 35.58 3.77
809 839 5.766150 TCAAATGAAACCACAACCACTAG 57.234 39.130 0.00 0.00 0.00 2.57
815 845 4.577283 TGAAACCACAACCACTAGTTTAGC 59.423 41.667 0.00 0.00 36.18 3.09
866 936 9.565213 CAAATTTAAAACAAGCACAATTTCCAA 57.435 25.926 0.00 0.00 0.00 3.53
877 947 6.836242 AGCACAATTTCCAATTTTAAAGGGA 58.164 32.000 2.29 2.29 0.00 4.20
878 948 6.710295 AGCACAATTTCCAATTTTAAAGGGAC 59.290 34.615 5.20 0.00 0.00 4.46
894 964 5.629079 AAGGGACGCAAAGAGATTTAAAG 57.371 39.130 0.00 0.00 0.00 1.85
930 1000 3.469863 TATTCGGCGCACCCATCCC 62.470 63.158 10.83 0.00 0.00 3.85
990 1061 3.878667 CCCCCATTCCTCCGCTCC 61.879 72.222 0.00 0.00 0.00 4.70
991 1062 3.089874 CCCCATTCCTCCGCTCCA 61.090 66.667 0.00 0.00 0.00 3.86
1146 1217 4.057428 GTCGCCGTGTCCTGCTCT 62.057 66.667 0.00 0.00 0.00 4.09
1152 1223 2.267324 GTGTCCTGCTCTGCCTCC 59.733 66.667 0.00 0.00 0.00 4.30
1317 1395 4.037923 CCTCTACTCTTCCTCATCTTGCTC 59.962 50.000 0.00 0.00 0.00 4.26
1320 1398 1.136695 CTCTTCCTCATCTTGCTCGCT 59.863 52.381 0.00 0.00 0.00 4.93
1338 1416 2.352617 CGCTTTTCCATGCTGCCTTTTA 60.353 45.455 0.00 0.00 0.00 1.52
1405 1818 0.454452 GACGCAAGAAATCCGTTGCC 60.454 55.000 1.68 0.00 45.18 4.52
1454 2376 0.331616 GTACAGGGGGATGCCTTGTT 59.668 55.000 16.35 4.70 0.00 2.83
1463 2385 4.280929 GGGGGATGCCTTGTTACATAATTC 59.719 45.833 2.19 0.00 0.00 2.17
1465 2395 5.010012 GGGGATGCCTTGTTACATAATTCAG 59.990 44.000 2.19 0.00 0.00 3.02
1550 3104 8.325787 ACTGTTTGGTAGATATATGTTGTGGAA 58.674 33.333 0.00 0.00 0.00 3.53
1552 3106 9.173021 TGTTTGGTAGATATATGTTGTGGAAAG 57.827 33.333 0.00 0.00 0.00 2.62
1581 3159 5.765182 AGGTGTGGAAAGTGAGTTTCTTATG 59.235 40.000 12.07 0.00 43.73 1.90
1589 3167 8.496751 GGAAAGTGAGTTTCTTATGTTGTACTC 58.503 37.037 12.07 0.00 43.73 2.59
1593 3171 6.590677 GTGAGTTTCTTATGTTGTACTCCCTC 59.409 42.308 0.00 0.00 32.96 4.30
1594 3172 6.051179 AGTTTCTTATGTTGTACTCCCTCC 57.949 41.667 0.00 0.00 0.00 4.30
1595 3173 4.730949 TTCTTATGTTGTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
1598 3176 4.159135 TCTTATGTTGTACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
1599 3177 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
1602 3180 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
1605 3183 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1607 3185 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1609 3187 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1610 3188 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1611 3189 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1614 3192 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1615 3193 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1616 3194 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1618 3196 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1631 3209 7.969536 TTGTCTTTCTAGAGATTTCAACAGG 57.030 36.000 0.00 0.00 0.00 4.00
1633 3211 6.931281 TGTCTTTCTAGAGATTTCAACAGGTG 59.069 38.462 0.00 0.00 0.00 4.00
1634 3212 7.155328 GTCTTTCTAGAGATTTCAACAGGTGA 58.845 38.462 0.00 0.00 0.00 4.02
1635 3213 7.117092 GTCTTTCTAGAGATTTCAACAGGTGAC 59.883 40.741 0.00 0.00 35.39 3.67
1636 3214 6.672266 TTCTAGAGATTTCAACAGGTGACT 57.328 37.500 0.00 0.00 46.44 3.41
1637 3215 7.776618 TTCTAGAGATTTCAACAGGTGACTA 57.223 36.000 0.00 0.00 40.21 2.59
1638 3216 7.159322 TCTAGAGATTTCAACAGGTGACTAC 57.841 40.000 0.00 0.00 40.21 2.73
1639 3217 5.808366 AGAGATTTCAACAGGTGACTACA 57.192 39.130 0.00 0.00 40.21 2.74
1640 3218 6.365970 AGAGATTTCAACAGGTGACTACAT 57.634 37.500 0.00 0.00 40.21 2.29
1641 3219 7.482169 AGAGATTTCAACAGGTGACTACATA 57.518 36.000 0.00 0.00 40.21 2.29
1642 3220 8.083828 AGAGATTTCAACAGGTGACTACATAT 57.916 34.615 0.00 0.00 40.21 1.78
1643 3221 7.984050 AGAGATTTCAACAGGTGACTACATATG 59.016 37.037 0.00 0.00 40.21 1.78
1644 3222 7.050377 AGATTTCAACAGGTGACTACATATGG 58.950 38.462 7.80 0.00 40.21 2.74
1645 3223 6.367374 TTTCAACAGGTGACTACATATGGA 57.633 37.500 7.80 0.00 40.21 3.41
1646 3224 5.598416 TCAACAGGTGACTACATATGGAG 57.402 43.478 13.77 13.77 40.21 3.86
1647 3225 4.122776 CAACAGGTGACTACATATGGAGC 58.877 47.826 15.30 8.47 40.21 4.70
1648 3226 3.374764 ACAGGTGACTACATATGGAGCA 58.625 45.455 15.30 10.95 40.21 4.26
1649 3227 3.774766 ACAGGTGACTACATATGGAGCAA 59.225 43.478 15.30 0.16 40.21 3.91
1650 3228 4.225042 ACAGGTGACTACATATGGAGCAAA 59.775 41.667 15.30 0.00 40.21 3.68
1651 3229 5.185454 CAGGTGACTACATATGGAGCAAAA 58.815 41.667 15.30 0.00 40.21 2.44
1652 3230 5.824624 CAGGTGACTACATATGGAGCAAAAT 59.175 40.000 15.30 0.00 40.21 1.82
1653 3231 5.824624 AGGTGACTACATATGGAGCAAAATG 59.175 40.000 15.30 0.00 40.61 2.32
1654 3232 5.822519 GGTGACTACATATGGAGCAAAATGA 59.177 40.000 15.30 0.00 0.00 2.57
1655 3233 6.017605 GGTGACTACATATGGAGCAAAATGAG 60.018 42.308 15.30 0.00 0.00 2.90
1656 3234 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
1657 3235 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
1658 3236 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
1659 3237 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
1660 3238 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
1661 3239 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
1662 3240 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
1663 3241 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
1664 3242 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
1665 3243 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
1666 3244 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
1697 3275 8.743085 AATATGTCTATATACATCCGTACGGT 57.257 34.615 32.16 17.15 40.52 4.83
1698 3276 9.836864 AATATGTCTATATACATCCGTACGGTA 57.163 33.333 32.16 18.79 40.52 4.02
1699 3277 7.783090 ATGTCTATATACATCCGTACGGTAG 57.217 40.000 32.16 26.08 35.08 3.18
1700 3278 6.701340 TGTCTATATACATCCGTACGGTAGT 58.299 40.000 32.16 29.59 36.47 2.73
1701 3279 6.813649 TGTCTATATACATCCGTACGGTAGTC 59.186 42.308 32.16 20.68 36.47 2.59
1702 3280 7.038659 GTCTATATACATCCGTACGGTAGTCT 58.961 42.308 32.16 23.71 36.47 3.24
1703 3281 8.191446 GTCTATATACATCCGTACGGTAGTCTA 58.809 40.741 32.16 24.81 36.47 2.59
1704 3282 8.918116 TCTATATACATCCGTACGGTAGTCTAT 58.082 37.037 32.16 28.22 36.47 1.98
1705 3283 9.539825 CTATATACATCCGTACGGTAGTCTATT 57.460 37.037 32.16 17.97 36.47 1.73
1706 3284 8.798859 ATATACATCCGTACGGTAGTCTATTT 57.201 34.615 32.16 13.73 36.47 1.40
1707 3285 5.179045 ACATCCGTACGGTAGTCTATTTG 57.821 43.478 32.16 17.71 36.47 2.32
1708 3286 4.883585 ACATCCGTACGGTAGTCTATTTGA 59.116 41.667 32.16 10.23 36.47 2.69
1709 3287 5.357878 ACATCCGTACGGTAGTCTATTTGAA 59.642 40.000 32.16 10.02 36.47 2.69
1710 3288 5.895636 TCCGTACGGTAGTCTATTTGAAA 57.104 39.130 32.16 6.33 36.47 2.69
1711 3289 6.455360 TCCGTACGGTAGTCTATTTGAAAT 57.545 37.500 32.16 0.00 36.47 2.17
1712 3290 6.498304 TCCGTACGGTAGTCTATTTGAAATC 58.502 40.000 32.16 0.00 36.47 2.17
1713 3291 6.319658 TCCGTACGGTAGTCTATTTGAAATCT 59.680 38.462 32.16 0.00 36.47 2.40
1714 3292 6.636044 CCGTACGGTAGTCTATTTGAAATCTC 59.364 42.308 26.39 0.00 0.00 2.75
1715 3293 7.416022 CGTACGGTAGTCTATTTGAAATCTCT 58.584 38.462 7.57 0.00 0.00 3.10
1716 3294 8.554528 CGTACGGTAGTCTATTTGAAATCTCTA 58.445 37.037 7.57 0.00 0.00 2.43
1933 3719 2.547855 GCCATTTTGTTGAACAGGGGAC 60.548 50.000 0.00 0.00 0.00 4.46
1975 3761 0.250513 ATGGAGTTGGGACGAAGCTC 59.749 55.000 0.00 0.00 0.00 4.09
2244 4032 5.583854 ACTGTCAGTATTGCTGCTCATTTAG 59.416 40.000 2.87 0.00 44.66 1.85
2309 4097 7.233144 CACCCATGGAGGATGATATCTATCTAG 59.767 44.444 15.22 0.00 41.22 2.43
2326 4114 8.948631 TCTATCTAGCTTTGATGGTAACTTTG 57.051 34.615 10.88 0.00 37.61 2.77
2423 4211 8.040132 GGAGAGGTGAGATATTCTGGAATAATG 58.960 40.741 7.06 0.00 36.90 1.90
2460 4259 6.707440 ACTGTGAGAGTACCTATTGATCTG 57.293 41.667 0.00 0.00 30.86 2.90
2464 4263 4.036852 TGAGAGTACCTATTGATCTGTGCG 59.963 45.833 0.00 0.00 0.00 5.34
2494 4293 8.236586 CAGTCTGATAGTAACTAGATGATCTGC 58.763 40.741 4.96 0.00 0.00 4.26
2525 4325 8.974408 TGATTATTTATTCTTGGTACATCGACG 58.026 33.333 0.00 0.00 39.30 5.12
2531 4331 3.571571 TCTTGGTACATCGACGAAGTTG 58.428 45.455 11.33 3.13 39.56 3.16
2540 4340 0.778815 CGACGAAGTTGACTCACAGC 59.221 55.000 0.00 0.00 47.00 4.40
2543 4343 2.838736 ACGAAGTTGACTCACAGCAAT 58.161 42.857 0.00 0.00 37.78 3.56
2548 4348 3.678289 AGTTGACTCACAGCAATGCATA 58.322 40.909 8.35 0.00 32.13 3.14
2561 4361 8.748582 CACAGCAATGCATAAATACTTAACATG 58.251 33.333 8.35 0.00 0.00 3.21
2577 4377 6.151144 ACTTAACATGGCCATCTGTTTTACTC 59.849 38.462 25.60 0.00 36.92 2.59
2617 4417 1.108776 CCTGAAGCATTCCACATGGG 58.891 55.000 0.00 0.00 46.93 4.00
2648 4448 8.834465 ACAACTCTGAATATAAGCAGCATTTAG 58.166 33.333 0.00 0.00 32.27 1.85
2851 4651 2.561419 TCATTCGAACGGGTTCTCTCTT 59.439 45.455 0.00 0.00 37.44 2.85
3140 4947 7.062839 GCTTATTCTGACGAATGTCTCATATCC 59.937 40.741 0.00 0.00 45.70 2.59
3141 4948 5.852282 TTCTGACGAATGTCTCATATCCA 57.148 39.130 0.00 0.00 45.70 3.41
3142 4949 5.444663 TCTGACGAATGTCTCATATCCAG 57.555 43.478 0.00 0.00 45.70 3.86
3147 4956 5.352284 ACGAATGTCTCATATCCAGTTGAC 58.648 41.667 0.00 0.00 0.00 3.18
3383 5198 4.644103 AATCCATTAGCTTGTCATGCAC 57.356 40.909 12.76 0.00 0.00 4.57
3398 5213 2.409870 GCACATTCTTGGAGCCCCG 61.410 63.158 0.00 0.00 34.29 5.73
3400 5215 2.231380 ACATTCTTGGAGCCCCGGT 61.231 57.895 0.00 0.00 34.29 5.28
3467 5282 9.566432 GATTTGGTATCCATCTTGAGAACTTAT 57.434 33.333 0.00 0.00 31.53 1.73
3548 5488 9.698617 GTAACAATTTGTTTGATACTCGATACC 57.301 33.333 19.15 0.00 41.45 2.73
3635 5575 1.064824 GGATGGGGATCTGGGAGCTT 61.065 60.000 0.00 0.00 0.00 3.74
3699 5639 2.614481 GCCCAGAGAAACACCGACATTA 60.614 50.000 0.00 0.00 0.00 1.90
3701 5641 3.623060 CCCAGAGAAACACCGACATTATG 59.377 47.826 0.00 0.00 0.00 1.90
3720 5719 9.524106 ACATTATGATGTTTTTATGCATCTGTG 57.476 29.630 0.19 0.00 43.92 3.66
3741 5740 1.071228 TGCACAGTGCTCATCTGTCTT 59.929 47.619 25.83 0.00 45.31 3.01
3742 5741 2.149578 GCACAGTGCTCATCTGTCTTT 58.850 47.619 18.92 0.00 43.14 2.52
3745 5744 3.062763 ACAGTGCTCATCTGTCTTTTCG 58.937 45.455 0.00 0.00 41.52 3.46
3746 5745 2.072298 AGTGCTCATCTGTCTTTTCGC 58.928 47.619 0.00 0.00 0.00 4.70
3747 5746 1.800586 GTGCTCATCTGTCTTTTCGCA 59.199 47.619 0.00 0.00 0.00 5.10
3749 5748 2.877786 TGCTCATCTGTCTTTTCGCAAA 59.122 40.909 0.00 0.00 0.00 3.68
3750 5749 3.314913 TGCTCATCTGTCTTTTCGCAAAA 59.685 39.130 0.00 0.00 0.00 2.44
3751 5750 4.202000 TGCTCATCTGTCTTTTCGCAAAAA 60.202 37.500 0.00 0.00 33.42 1.94
3775 5774 5.876612 AAAAAGTGCTCATCTGTCTGATC 57.123 39.130 0.00 0.00 32.05 2.92
3776 5775 3.540314 AAGTGCTCATCTGTCTGATCC 57.460 47.619 0.00 0.00 32.05 3.36
3777 5776 2.749600 AGTGCTCATCTGTCTGATCCT 58.250 47.619 0.00 0.00 32.05 3.24
3778 5777 3.106054 AGTGCTCATCTGTCTGATCCTT 58.894 45.455 0.00 0.00 32.05 3.36
3779 5778 4.285020 AGTGCTCATCTGTCTGATCCTTA 58.715 43.478 0.00 0.00 32.05 2.69
3780 5779 4.713814 AGTGCTCATCTGTCTGATCCTTAA 59.286 41.667 0.00 0.00 32.05 1.85
3781 5780 4.808364 GTGCTCATCTGTCTGATCCTTAAC 59.192 45.833 0.00 0.00 32.05 2.01
3782 5781 4.713814 TGCTCATCTGTCTGATCCTTAACT 59.286 41.667 0.00 0.00 32.05 2.24
3783 5782 5.163468 TGCTCATCTGTCTGATCCTTAACTC 60.163 44.000 0.00 0.00 32.05 3.01
3784 5783 5.738783 GCTCATCTGTCTGATCCTTAACTCC 60.739 48.000 0.00 0.00 32.05 3.85
3785 5784 5.523588 TCATCTGTCTGATCCTTAACTCCT 58.476 41.667 0.00 0.00 32.05 3.69
3786 5785 5.362143 TCATCTGTCTGATCCTTAACTCCTG 59.638 44.000 0.00 0.00 32.05 3.86
3830 5829 2.094545 GGTTGGCAAAATCGAAGATGCT 60.095 45.455 16.07 0.00 45.12 3.79
3905 5904 2.892425 GCGGCGGACAGAATCCTG 60.892 66.667 9.78 0.00 46.69 3.86
3917 5916 5.495640 GACAGAATCCTGGAAGAATCAAGT 58.504 41.667 0.00 1.01 44.60 3.16
3920 5919 3.550437 ATCCTGGAAGAATCAAGTCCG 57.450 47.619 0.00 0.00 34.07 4.79
4060 6099 0.890542 AGGTTTTTCCGTAACCCCGC 60.891 55.000 0.00 0.00 44.96 6.13
4077 6116 1.616865 CCGCAATCTATCTTACGGGGA 59.383 52.381 0.00 0.00 37.04 4.81
4189 6244 2.002586 CTGGTGTTGCTATCCTGAACG 58.997 52.381 0.00 0.00 0.00 3.95
4218 6273 3.079578 ACAGTTGATGTGAATGCCTCTG 58.920 45.455 0.00 0.00 41.91 3.35
4245 6300 6.919662 TGTGCTGAATTTTCTTGAGAAATCAC 59.080 34.615 6.98 8.72 42.83 3.06
4248 6303 8.795513 TGCTGAATTTTCTTGAGAAATCACATA 58.204 29.630 6.98 0.00 42.83 2.29
4272 6327 7.693969 ATATAAATTACATCTTCTGGCCTGC 57.306 36.000 3.32 0.00 0.00 4.85
4276 6331 0.035630 ACATCTTCTGGCCTGCTCAC 60.036 55.000 3.32 0.00 0.00 3.51
4293 6348 3.067742 GCTCACCCATCTGAATGAAATGG 59.932 47.826 0.00 0.00 39.76 3.16
4336 6391 9.301897 AGAATGAAATGTAATAATCTAAGGGCC 57.698 33.333 0.00 0.00 0.00 5.80
4337 6392 9.077885 GAATGAAATGTAATAATCTAAGGGCCA 57.922 33.333 6.18 0.00 0.00 5.36
4338 6393 9.605951 AATGAAATGTAATAATCTAAGGGCCAT 57.394 29.630 6.18 0.00 0.00 4.40
4339 6394 8.408043 TGAAATGTAATAATCTAAGGGCCATG 57.592 34.615 6.18 0.00 0.00 3.66
4340 6395 8.004215 TGAAATGTAATAATCTAAGGGCCATGT 58.996 33.333 6.18 0.00 0.00 3.21
4341 6396 9.515226 GAAATGTAATAATCTAAGGGCCATGTA 57.485 33.333 6.18 0.00 0.00 2.29
4344 6399 8.862325 TGTAATAATCTAAGGGCCATGTATTG 57.138 34.615 6.18 0.00 0.00 1.90
4345 6400 6.840780 AATAATCTAAGGGCCATGTATTGC 57.159 37.500 6.18 0.00 0.00 3.56
4346 6401 4.459852 AATCTAAGGGCCATGTATTGCT 57.540 40.909 6.18 0.00 0.00 3.91
4347 6402 3.492102 TCTAAGGGCCATGTATTGCTC 57.508 47.619 6.18 0.00 0.00 4.26
4348 6403 2.777114 TCTAAGGGCCATGTATTGCTCA 59.223 45.455 6.18 0.00 0.00 4.26
4349 6404 2.530460 AAGGGCCATGTATTGCTCAA 57.470 45.000 6.18 0.00 0.00 3.02
4350 6405 2.062971 AGGGCCATGTATTGCTCAAG 57.937 50.000 6.18 0.00 0.00 3.02
4351 6406 1.285962 AGGGCCATGTATTGCTCAAGT 59.714 47.619 6.18 0.00 0.00 3.16
4352 6407 1.678101 GGGCCATGTATTGCTCAAGTC 59.322 52.381 4.39 0.00 0.00 3.01
4353 6408 2.368439 GGCCATGTATTGCTCAAGTCA 58.632 47.619 0.00 0.00 0.00 3.41
4354 6409 2.098117 GGCCATGTATTGCTCAAGTCAC 59.902 50.000 0.00 0.00 0.00 3.67
4355 6410 2.749076 GCCATGTATTGCTCAAGTCACA 59.251 45.455 0.00 0.00 0.00 3.58
4356 6411 3.426695 GCCATGTATTGCTCAAGTCACAC 60.427 47.826 0.00 0.00 0.00 3.82
4357 6412 3.752747 CCATGTATTGCTCAAGTCACACA 59.247 43.478 0.00 0.00 0.00 3.72
4358 6413 4.216042 CCATGTATTGCTCAAGTCACACAA 59.784 41.667 0.00 0.00 0.00 3.33
4359 6414 5.106038 CCATGTATTGCTCAAGTCACACAAT 60.106 40.000 0.00 0.00 35.31 2.71
4360 6415 5.611796 TGTATTGCTCAAGTCACACAATC 57.388 39.130 0.00 0.00 33.31 2.67
4361 6416 3.818961 ATTGCTCAAGTCACACAATCG 57.181 42.857 0.00 0.00 0.00 3.34
4362 6417 0.867746 TGCTCAAGTCACACAATCGC 59.132 50.000 0.00 0.00 0.00 4.58
4363 6418 0.166814 GCTCAAGTCACACAATCGCC 59.833 55.000 0.00 0.00 0.00 5.54
4364 6419 1.511850 CTCAAGTCACACAATCGCCA 58.488 50.000 0.00 0.00 0.00 5.69
4365 6420 1.195448 CTCAAGTCACACAATCGCCAC 59.805 52.381 0.00 0.00 0.00 5.01
4366 6421 0.110688 CAAGTCACACAATCGCCACG 60.111 55.000 0.00 0.00 0.00 4.94
4367 6422 1.841663 AAGTCACACAATCGCCACGC 61.842 55.000 0.00 0.00 0.00 5.34
4378 6433 3.561429 GCCACGCGACTCAAATCA 58.439 55.556 15.93 0.00 0.00 2.57
4379 6434 1.866237 GCCACGCGACTCAAATCAA 59.134 52.632 15.93 0.00 0.00 2.57
4380 6435 0.237235 GCCACGCGACTCAAATCAAA 59.763 50.000 15.93 0.00 0.00 2.69
4381 6436 1.950472 CCACGCGACTCAAATCAAAC 58.050 50.000 15.93 0.00 0.00 2.93
4382 6437 1.262950 CCACGCGACTCAAATCAAACA 59.737 47.619 15.93 0.00 0.00 2.83
4383 6438 2.095768 CCACGCGACTCAAATCAAACAT 60.096 45.455 15.93 0.00 0.00 2.71
4384 6439 3.124466 CCACGCGACTCAAATCAAACATA 59.876 43.478 15.93 0.00 0.00 2.29
4385 6440 4.377943 CCACGCGACTCAAATCAAACATAA 60.378 41.667 15.93 0.00 0.00 1.90
4386 6441 5.143660 CACGCGACTCAAATCAAACATAAA 58.856 37.500 15.93 0.00 0.00 1.40
4387 6442 5.623264 CACGCGACTCAAATCAAACATAAAA 59.377 36.000 15.93 0.00 0.00 1.52
4388 6443 6.141527 CACGCGACTCAAATCAAACATAAAAA 59.858 34.615 15.93 0.00 0.00 1.94
4389 6444 6.359617 ACGCGACTCAAATCAAACATAAAAAG 59.640 34.615 15.93 0.00 0.00 2.27
4390 6445 6.359617 CGCGACTCAAATCAAACATAAAAAGT 59.640 34.615 0.00 0.00 0.00 2.66
4391 6446 7.532546 CGCGACTCAAATCAAACATAAAAAGTA 59.467 33.333 0.00 0.00 0.00 2.24
4392 6447 9.341899 GCGACTCAAATCAAACATAAAAAGTAT 57.658 29.630 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.885644 CGCCCATCGACCTCAACG 60.886 66.667 0.00 0.00 41.67 4.10
1 2 3.195698 GCGCCCATCGACCTCAAC 61.196 66.667 0.00 0.00 41.67 3.18
126 127 4.278513 CTTGCAACCCGGTCCCCA 62.279 66.667 0.00 0.00 0.00 4.96
508 519 3.126225 GACCTCGACCTCGACGCT 61.126 66.667 0.00 0.00 44.22 5.07
542 559 3.327404 CCCACGCCCCTAACCAGT 61.327 66.667 0.00 0.00 0.00 4.00
582 600 0.642156 ATTCCCCTCCATTTTCCCCC 59.358 55.000 0.00 0.00 0.00 5.40
597 616 1.907807 TGGCAGCCACCAACATTCC 60.908 57.895 11.22 0.00 36.55 3.01
625 645 4.332543 ACTTCTCTCCCCGGGCCA 62.333 66.667 17.73 1.73 0.00 5.36
655 685 3.720193 CGGACACGAGACGGACGT 61.720 66.667 0.00 0.00 44.60 4.34
683 713 6.488769 TTAGGCCTAATTTTGAGTCGGATA 57.511 37.500 21.68 0.00 0.00 2.59
689 719 6.022958 ACCCATTTTAGGCCTAATTTTGAGT 58.977 36.000 25.70 16.23 0.00 3.41
699 729 1.076995 GGCGACCCATTTTAGGCCT 60.077 57.895 11.78 11.78 37.57 5.19
736 766 4.770874 ACCCATTTCGTCCGCCCG 62.771 66.667 0.00 0.00 0.00 6.13
737 767 2.822701 GACCCATTTCGTCCGCCC 60.823 66.667 0.00 0.00 0.00 6.13
738 768 3.192922 CGACCCATTTCGTCCGCC 61.193 66.667 0.00 0.00 34.16 6.13
739 769 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
740 770 2.125673 AGCGACCCATTTCGTCCG 60.126 61.111 0.00 0.00 41.26 4.79
741 771 2.106683 CCAGCGACCCATTTCGTCC 61.107 63.158 0.00 0.00 41.26 4.79
742 772 1.079405 TCCAGCGACCCATTTCGTC 60.079 57.895 0.00 0.00 41.26 4.20
743 773 1.079127 CTCCAGCGACCCATTTCGT 60.079 57.895 0.00 0.00 41.26 3.85
744 774 0.673644 AACTCCAGCGACCCATTTCG 60.674 55.000 0.00 0.00 42.15 3.46
745 775 0.804989 CAACTCCAGCGACCCATTTC 59.195 55.000 0.00 0.00 0.00 2.17
746 776 0.110486 ACAACTCCAGCGACCCATTT 59.890 50.000 0.00 0.00 0.00 2.32
747 777 0.110486 AACAACTCCAGCGACCCATT 59.890 50.000 0.00 0.00 0.00 3.16
748 778 0.321653 GAACAACTCCAGCGACCCAT 60.322 55.000 0.00 0.00 0.00 4.00
749 779 1.070786 GAACAACTCCAGCGACCCA 59.929 57.895 0.00 0.00 0.00 4.51
750 780 0.606604 TAGAACAACTCCAGCGACCC 59.393 55.000 0.00 0.00 0.00 4.46
751 781 2.288886 ACTTAGAACAACTCCAGCGACC 60.289 50.000 0.00 0.00 0.00 4.79
752 782 2.731976 CACTTAGAACAACTCCAGCGAC 59.268 50.000 0.00 0.00 0.00 5.19
753 783 2.364324 ACACTTAGAACAACTCCAGCGA 59.636 45.455 0.00 0.00 0.00 4.93
754 784 2.755650 ACACTTAGAACAACTCCAGCG 58.244 47.619 0.00 0.00 0.00 5.18
755 785 3.251004 CCAACACTTAGAACAACTCCAGC 59.749 47.826 0.00 0.00 0.00 4.85
756 786 3.251004 GCCAACACTTAGAACAACTCCAG 59.749 47.826 0.00 0.00 0.00 3.86
757 787 3.211045 GCCAACACTTAGAACAACTCCA 58.789 45.455 0.00 0.00 0.00 3.86
758 788 2.223377 CGCCAACACTTAGAACAACTCC 59.777 50.000 0.00 0.00 0.00 3.85
759 789 2.870411 ACGCCAACACTTAGAACAACTC 59.130 45.455 0.00 0.00 0.00 3.01
760 790 2.914059 ACGCCAACACTTAGAACAACT 58.086 42.857 0.00 0.00 0.00 3.16
761 791 3.685836 AACGCCAACACTTAGAACAAC 57.314 42.857 0.00 0.00 0.00 3.32
762 792 4.705337 AAAACGCCAACACTTAGAACAA 57.295 36.364 0.00 0.00 0.00 2.83
763 793 4.877251 ACTAAAACGCCAACACTTAGAACA 59.123 37.500 0.00 0.00 0.00 3.18
764 794 5.413969 ACTAAAACGCCAACACTTAGAAC 57.586 39.130 0.00 0.00 0.00 3.01
765 795 5.585445 TGAACTAAAACGCCAACACTTAGAA 59.415 36.000 0.00 0.00 0.00 2.10
766 796 5.117584 TGAACTAAAACGCCAACACTTAGA 58.882 37.500 0.00 0.00 0.00 2.10
767 797 5.412526 TGAACTAAAACGCCAACACTTAG 57.587 39.130 0.00 0.00 0.00 2.18
777 807 5.517054 TGTGGTTTCATTTGAACTAAAACGC 59.483 36.000 0.00 0.00 33.13 4.84
778 808 7.387945 GTTGTGGTTTCATTTGAACTAAAACG 58.612 34.615 0.00 0.00 33.13 3.60
804 834 1.822990 TCCCTCCGTGCTAAACTAGTG 59.177 52.381 0.00 0.00 0.00 2.74
809 839 4.868314 ATATACTCCCTCCGTGCTAAAC 57.132 45.455 0.00 0.00 0.00 2.01
815 845 6.651975 ACTCTAAAATATACTCCCTCCGTG 57.348 41.667 0.00 0.00 0.00 4.94
866 936 6.590234 AATCTCTTTGCGTCCCTTTAAAAT 57.410 33.333 0.00 0.00 0.00 1.82
877 947 2.724839 CGCGCTTTAAATCTCTTTGCGT 60.725 45.455 5.56 0.00 43.16 5.24
878 948 1.834178 CGCGCTTTAAATCTCTTTGCG 59.166 47.619 5.56 10.35 43.91 4.85
978 1049 3.090532 GGGGTGGAGCGGAGGAAT 61.091 66.667 0.00 0.00 0.00 3.01
986 1057 4.447342 CCATGGGTGGGGTGGAGC 62.447 72.222 2.85 0.00 42.11 4.70
1137 1208 4.154347 CCGGAGGCAGAGCAGGAC 62.154 72.222 0.00 0.00 46.14 3.85
1161 1232 3.446570 CCTAACTCGTCGGCCGGT 61.447 66.667 27.83 12.72 37.11 5.28
1164 1241 1.883084 CATGCCTAACTCGTCGGCC 60.883 63.158 0.00 0.00 43.12 6.13
1317 1395 0.037975 AAAGGCAGCATGGAAAAGCG 60.038 50.000 0.00 0.00 35.86 4.68
1320 1398 4.151883 AGAGTAAAAGGCAGCATGGAAAA 58.848 39.130 0.00 0.00 35.86 2.29
1338 1416 2.026075 ACAGAGGACCGCTAACTAGAGT 60.026 50.000 0.00 0.00 0.00 3.24
1392 1801 4.336433 CACAATCATAGGCAACGGATTTCT 59.664 41.667 0.00 0.00 46.39 2.52
1405 1818 4.160736 TCCGATCTACGCACAATCATAG 57.839 45.455 0.00 0.00 41.07 2.23
1454 2376 8.995027 AAGGCCATCAATTACTGAATTATGTA 57.005 30.769 5.01 0.00 37.67 2.29
1484 2427 2.985456 GCCCCCTCTCACTGACAG 59.015 66.667 0.00 0.00 0.00 3.51
1546 3100 1.208706 TCCACACCTGTCACTTTCCA 58.791 50.000 0.00 0.00 0.00 3.53
1550 3104 2.238646 TCACTTTCCACACCTGTCACTT 59.761 45.455 0.00 0.00 0.00 3.16
1552 3106 2.213499 CTCACTTTCCACACCTGTCAC 58.787 52.381 0.00 0.00 0.00 3.67
1581 3159 1.264295 AGGAACGGAGGGAGTACAAC 58.736 55.000 0.00 0.00 0.00 3.32
1589 3167 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1593 3171 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1605 3183 9.007901 CCTGTTGAAATCTCTAGAAAGACAAAT 57.992 33.333 0.00 0.00 0.00 2.32
1607 3185 7.442364 CACCTGTTGAAATCTCTAGAAAGACAA 59.558 37.037 0.00 0.00 0.00 3.18
1609 3187 7.117092 GTCACCTGTTGAAATCTCTAGAAAGAC 59.883 40.741 0.00 0.00 35.39 3.01
1610 3188 7.015682 AGTCACCTGTTGAAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 35.39 2.52
1611 3189 7.158021 AGTCACCTGTTGAAATCTCTAGAAAG 58.842 38.462 0.00 0.00 35.39 2.62
1614 3192 6.719829 TGTAGTCACCTGTTGAAATCTCTAGA 59.280 38.462 0.00 0.00 35.39 2.43
1615 3193 6.925211 TGTAGTCACCTGTTGAAATCTCTAG 58.075 40.000 0.00 0.00 35.39 2.43
1616 3194 6.911250 TGTAGTCACCTGTTGAAATCTCTA 57.089 37.500 0.00 0.00 35.39 2.43
1618 3196 7.225538 CCATATGTAGTCACCTGTTGAAATCTC 59.774 40.741 1.24 0.00 35.39 2.75
1620 3198 7.047891 TCCATATGTAGTCACCTGTTGAAATC 58.952 38.462 1.24 0.00 35.39 2.17
1621 3199 6.957631 TCCATATGTAGTCACCTGTTGAAAT 58.042 36.000 1.24 0.00 35.39 2.17
1622 3200 6.367374 TCCATATGTAGTCACCTGTTGAAA 57.633 37.500 1.24 0.00 35.39 2.69
1624 3202 4.141937 GCTCCATATGTAGTCACCTGTTGA 60.142 45.833 1.24 0.00 0.00 3.18
1625 3203 4.122776 GCTCCATATGTAGTCACCTGTTG 58.877 47.826 1.24 0.00 0.00 3.33
1626 3204 3.774766 TGCTCCATATGTAGTCACCTGTT 59.225 43.478 1.24 0.00 0.00 3.16
1630 3208 5.822519 TCATTTTGCTCCATATGTAGTCACC 59.177 40.000 1.24 0.00 0.00 4.02
1631 3209 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
1633 3211 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
1634 3212 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
1635 3213 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
1636 3214 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
1637 3215 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
1638 3216 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
1639 3217 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
1640 3218 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
1641 3219 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
1642 3220 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
1643 3221 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1644 3222 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1671 3249 9.182214 ACCGTACGGATGTATATAGACATATTT 57.818 33.333 39.52 8.12 40.18 1.40
1672 3250 8.743085 ACCGTACGGATGTATATAGACATATT 57.257 34.615 39.52 8.47 40.18 1.28
1673 3251 9.486497 CTACCGTACGGATGTATATAGACATAT 57.514 37.037 39.52 13.88 40.18 1.78
1674 3252 8.478066 ACTACCGTACGGATGTATATAGACATA 58.522 37.037 39.52 15.27 40.18 2.29
1675 3253 7.334090 ACTACCGTACGGATGTATATAGACAT 58.666 38.462 39.52 12.70 42.82 3.06
1676 3254 6.701340 ACTACCGTACGGATGTATATAGACA 58.299 40.000 39.52 2.07 38.96 3.41
1677 3255 7.038659 AGACTACCGTACGGATGTATATAGAC 58.961 42.308 39.52 25.15 38.96 2.59
1678 3256 7.175347 AGACTACCGTACGGATGTATATAGA 57.825 40.000 39.52 10.37 38.96 1.98
1679 3257 9.539825 AATAGACTACCGTACGGATGTATATAG 57.460 37.037 39.52 27.63 38.96 1.31
1680 3258 9.890629 AAATAGACTACCGTACGGATGTATATA 57.109 33.333 39.52 24.83 38.96 0.86
1681 3259 8.671921 CAAATAGACTACCGTACGGATGTATAT 58.328 37.037 39.52 32.17 38.96 0.86
1682 3260 7.877612 TCAAATAGACTACCGTACGGATGTATA 59.122 37.037 39.52 31.60 38.96 1.47
1683 3261 6.712095 TCAAATAGACTACCGTACGGATGTAT 59.288 38.462 39.52 30.70 38.96 2.29
1684 3262 6.054941 TCAAATAGACTACCGTACGGATGTA 58.945 40.000 39.52 24.61 38.96 2.29
1685 3263 4.883585 TCAAATAGACTACCGTACGGATGT 59.116 41.667 39.52 32.31 38.96 3.06
1686 3264 5.428496 TCAAATAGACTACCGTACGGATG 57.572 43.478 39.52 29.63 38.96 3.51
1687 3265 6.455360 TTTCAAATAGACTACCGTACGGAT 57.545 37.500 39.52 24.82 38.96 4.18
1688 3266 5.895636 TTTCAAATAGACTACCGTACGGA 57.104 39.130 39.52 21.65 38.96 4.69
1689 3267 6.501781 AGATTTCAAATAGACTACCGTACGG 58.498 40.000 32.22 32.22 42.03 4.02
1690 3268 7.416022 AGAGATTTCAAATAGACTACCGTACG 58.584 38.462 8.69 8.69 0.00 3.67
1713 3291 9.211485 CCGTTCCTAAGTATTTGTCTTTTTAGA 57.789 33.333 0.00 0.00 0.00 2.10
1714 3292 9.211485 TCCGTTCCTAAGTATTTGTCTTTTTAG 57.789 33.333 0.00 0.00 0.00 1.85
1715 3293 9.211485 CTCCGTTCCTAAGTATTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1716 3294 7.174426 CCTCCGTTCCTAAGTATTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
1717 3295 6.653740 CCTCCGTTCCTAAGTATTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
1718 3296 6.171213 CCTCCGTTCCTAAGTATTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1719 3297 5.338137 CCCTCCGTTCCTAAGTATTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1720 3298 4.161754 CCCTCCGTTCCTAAGTATTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1721 3299 4.161001 TCCCTCCGTTCCTAAGTATTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1722 3300 4.098894 TCCCTCCGTTCCTAAGTATTTGT 58.901 43.478 0.00 0.00 0.00 2.83
1723 3301 4.161754 ACTCCCTCCGTTCCTAAGTATTTG 59.838 45.833 0.00 0.00 0.00 2.32
1724 3302 4.359996 ACTCCCTCCGTTCCTAAGTATTT 58.640 43.478 0.00 0.00 0.00 1.40
1725 3303 3.991683 ACTCCCTCCGTTCCTAAGTATT 58.008 45.455 0.00 0.00 0.00 1.89
1726 3304 3.684408 ACTCCCTCCGTTCCTAAGTAT 57.316 47.619 0.00 0.00 0.00 2.12
1727 3305 4.803329 ATACTCCCTCCGTTCCTAAGTA 57.197 45.455 0.00 0.00 0.00 2.24
1728 3306 3.684408 ATACTCCCTCCGTTCCTAAGT 57.316 47.619 0.00 0.00 0.00 2.24
1729 3307 4.404715 TCAAATACTCCCTCCGTTCCTAAG 59.595 45.833 0.00 0.00 0.00 2.18
1730 3308 4.161001 GTCAAATACTCCCTCCGTTCCTAA 59.839 45.833 0.00 0.00 0.00 2.69
1731 3309 3.703052 GTCAAATACTCCCTCCGTTCCTA 59.297 47.826 0.00 0.00 0.00 2.94
1732 3310 2.500504 GTCAAATACTCCCTCCGTTCCT 59.499 50.000 0.00 0.00 0.00 3.36
1733 3311 2.500504 AGTCAAATACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 30.33 3.62
1734 3312 3.889520 AGTCAAATACTCCCTCCGTTC 57.110 47.619 0.00 0.00 30.33 3.95
1735 3313 5.012354 TGTTTAGTCAAATACTCCCTCCGTT 59.988 40.000 0.00 0.00 39.80 4.44
1933 3719 0.892755 TACCAGCCACAAGGTACTCG 59.107 55.000 0.00 0.00 38.49 4.18
1975 3761 1.493311 GGTCTCAAACGCGAGCTTG 59.507 57.895 15.93 13.40 38.48 4.01
2195 3983 3.152341 CCTTCTCTGCAAGGTCAACATT 58.848 45.455 0.00 0.00 38.58 2.71
2244 4032 3.190118 AGCAAGAGCAAGAATTACTGTGC 59.810 43.478 0.00 0.00 45.49 4.57
2309 4097 6.902224 ACAAAACAAAGTTACCATCAAAGC 57.098 33.333 0.00 0.00 0.00 3.51
2326 4114 8.237267 CCTTGATGACCTATGAAAGTACAAAAC 58.763 37.037 0.00 0.00 0.00 2.43
2460 4259 2.215907 ACTATCAGACTGATGCGCAC 57.784 50.000 25.26 7.75 37.70 5.34
2464 4263 8.105097 TCATCTAGTTACTATCAGACTGATGC 57.895 38.462 25.26 11.40 37.70 3.91
2521 4321 0.778815 GCTGTGAGTCAACTTCGTCG 59.221 55.000 0.00 0.00 0.00 5.12
2525 4325 2.291465 TGCATTGCTGTGAGTCAACTTC 59.709 45.455 10.49 0.00 0.00 3.01
2531 4331 6.369059 AGTATTTATGCATTGCTGTGAGTC 57.631 37.500 3.54 0.00 0.00 3.36
2540 4340 7.208777 TGGCCATGTTAAGTATTTATGCATTG 58.791 34.615 3.54 0.00 0.00 2.82
2543 4343 6.777091 AGATGGCCATGTTAAGTATTTATGCA 59.223 34.615 26.56 0.00 0.00 3.96
2548 4348 7.480760 AAACAGATGGCCATGTTAAGTATTT 57.519 32.000 26.56 9.23 38.66 1.40
2561 4361 4.261801 TGCTAAGAGTAAAACAGATGGCC 58.738 43.478 0.00 0.00 0.00 5.36
2577 4377 9.770097 TTCAGGAGAGTAAATATCATTGCTAAG 57.230 33.333 0.00 0.00 0.00 2.18
2617 4417 6.348050 GCTGCTTATATTCAGAGTTGTATGGC 60.348 42.308 6.07 0.00 32.26 4.40
2669 4469 5.111989 TGCTGTCTGTATCAACAATAGCTC 58.888 41.667 0.00 0.00 34.78 4.09
2851 4651 4.597075 TGGATAAATGCATACCTCCTAGCA 59.403 41.667 17.44 0.00 41.73 3.49
3140 4947 6.016024 TCAGAAATTCAGGAAATGGTCAACTG 60.016 38.462 0.00 0.00 0.00 3.16
3141 4948 6.070656 TCAGAAATTCAGGAAATGGTCAACT 58.929 36.000 0.00 0.00 0.00 3.16
3142 4949 6.331369 TCAGAAATTCAGGAAATGGTCAAC 57.669 37.500 0.00 0.00 0.00 3.18
3383 5198 1.750399 CACCGGGGCTCCAAGAATG 60.750 63.158 6.32 0.00 0.00 2.67
3467 5282 3.117169 ACCATTGGGCTGGCTGATATTAA 60.117 43.478 7.78 0.00 40.15 1.40
3548 5488 6.803320 CACTAACCATACTTTCAGCAATGTTG 59.197 38.462 0.00 0.00 0.00 3.33
3635 5575 5.416013 TGTTCTGTTGTGTGATGTTTTACCA 59.584 36.000 0.00 0.00 0.00 3.25
3699 5639 5.808540 GCACACAGATGCATAAAAACATCAT 59.191 36.000 0.00 0.00 44.16 2.45
3701 5641 5.691508 GCACACAGATGCATAAAAACATC 57.308 39.130 0.00 0.00 45.39 3.06
3753 5752 4.699257 GGATCAGACAGATGAGCACTTTTT 59.301 41.667 0.00 0.00 37.33 1.94
3754 5753 4.019501 AGGATCAGACAGATGAGCACTTTT 60.020 41.667 0.00 0.00 37.33 2.27
3755 5754 3.518705 AGGATCAGACAGATGAGCACTTT 59.481 43.478 0.00 0.00 37.33 2.66
3756 5755 3.106054 AGGATCAGACAGATGAGCACTT 58.894 45.455 0.00 0.00 37.33 3.16
3757 5756 2.749600 AGGATCAGACAGATGAGCACT 58.250 47.619 0.00 0.00 37.33 4.40
3758 5757 3.540314 AAGGATCAGACAGATGAGCAC 57.460 47.619 0.00 0.00 37.33 4.40
3759 5758 4.713814 AGTTAAGGATCAGACAGATGAGCA 59.286 41.667 0.00 0.00 37.33 4.26
3760 5759 5.275067 AGTTAAGGATCAGACAGATGAGC 57.725 43.478 0.00 0.00 37.00 4.26
3761 5760 5.598005 AGGAGTTAAGGATCAGACAGATGAG 59.402 44.000 0.00 0.00 37.00 2.90
3762 5761 5.362143 CAGGAGTTAAGGATCAGACAGATGA 59.638 44.000 0.00 0.00 37.00 2.92
3763 5762 5.128499 ACAGGAGTTAAGGATCAGACAGATG 59.872 44.000 0.00 0.00 37.00 2.90
3764 5763 5.276440 ACAGGAGTTAAGGATCAGACAGAT 58.724 41.667 0.00 0.00 40.48 2.90
3765 5764 4.678256 ACAGGAGTTAAGGATCAGACAGA 58.322 43.478 0.00 0.00 0.00 3.41
3766 5765 5.413309 AACAGGAGTTAAGGATCAGACAG 57.587 43.478 0.00 0.00 35.85 3.51
3767 5766 5.825593 AAACAGGAGTTAAGGATCAGACA 57.174 39.130 0.00 0.00 36.84 3.41
3795 5794 2.928396 AACCTGGGAGTGTCGGGG 60.928 66.667 0.00 0.00 35.03 5.73
3796 5795 2.347490 CAACCTGGGAGTGTCGGG 59.653 66.667 0.00 0.00 36.74 5.14
3805 5804 0.965439 TTCGATTTTGCCAACCTGGG 59.035 50.000 0.00 0.00 38.19 4.45
3806 5805 1.885887 TCTTCGATTTTGCCAACCTGG 59.114 47.619 0.00 0.00 41.55 4.45
3807 5806 3.504863 CATCTTCGATTTTGCCAACCTG 58.495 45.455 0.00 0.00 0.00 4.00
3830 5829 0.319469 TGAACGTTCGCAGCATCTCA 60.319 50.000 22.48 0.00 0.00 3.27
3905 5904 2.115343 AAGCCGGACTTGATTCTTCC 57.885 50.000 5.05 0.00 37.17 3.46
4060 6099 5.277857 ACTTGTCCCCGTAAGATAGATTG 57.722 43.478 0.00 0.00 43.02 2.67
4077 6116 9.631452 GTAAACTACTTTTACTCCGATACTTGT 57.369 33.333 0.60 0.00 44.37 3.16
4218 6273 4.836125 TCTCAAGAAAATTCAGCACACC 57.164 40.909 0.00 0.00 0.00 4.16
4248 6303 7.465116 AGCAGGCCAGAAGATGTAATTTATAT 58.535 34.615 5.01 0.00 0.00 0.86
4263 6318 2.611800 ATGGGTGAGCAGGCCAGA 60.612 61.111 5.01 0.00 0.00 3.86
4272 6327 4.529897 TCCATTTCATTCAGATGGGTGAG 58.470 43.478 2.12 0.00 40.55 3.51
4276 6331 5.927281 AAGTTCCATTTCATTCAGATGGG 57.073 39.130 2.12 0.00 40.55 4.00
4321 6376 7.698912 AGCAATACATGGCCCTTAGATTATTA 58.301 34.615 0.00 0.00 0.00 0.98
4324 6379 5.073008 TGAGCAATACATGGCCCTTAGATTA 59.927 40.000 0.00 0.00 0.00 1.75
4325 6380 4.141181 TGAGCAATACATGGCCCTTAGATT 60.141 41.667 0.00 0.00 0.00 2.40
4326 6381 3.395607 TGAGCAATACATGGCCCTTAGAT 59.604 43.478 0.00 0.00 0.00 1.98
4327 6382 2.777114 TGAGCAATACATGGCCCTTAGA 59.223 45.455 0.00 0.00 0.00 2.10
4328 6383 3.213206 TGAGCAATACATGGCCCTTAG 57.787 47.619 0.00 0.00 0.00 2.18
4329 6384 3.053693 ACTTGAGCAATACATGGCCCTTA 60.054 43.478 0.00 0.00 0.00 2.69
4330 6385 2.291800 ACTTGAGCAATACATGGCCCTT 60.292 45.455 0.00 0.00 0.00 3.95
4331 6386 1.285962 ACTTGAGCAATACATGGCCCT 59.714 47.619 0.00 0.00 0.00 5.19
4332 6387 1.678101 GACTTGAGCAATACATGGCCC 59.322 52.381 0.00 0.00 0.00 5.80
4333 6388 2.098117 GTGACTTGAGCAATACATGGCC 59.902 50.000 0.00 0.00 0.00 5.36
4334 6389 2.749076 TGTGACTTGAGCAATACATGGC 59.251 45.455 0.00 0.00 0.00 4.40
4335 6390 3.752747 TGTGTGACTTGAGCAATACATGG 59.247 43.478 0.00 0.00 0.00 3.66
4336 6391 5.361135 TTGTGTGACTTGAGCAATACATG 57.639 39.130 0.00 0.00 0.00 3.21
4337 6392 5.163824 CGATTGTGTGACTTGAGCAATACAT 60.164 40.000 0.00 0.00 30.96 2.29
4338 6393 4.152223 CGATTGTGTGACTTGAGCAATACA 59.848 41.667 0.00 0.00 30.96 2.29
4339 6394 4.641954 CGATTGTGTGACTTGAGCAATAC 58.358 43.478 0.00 0.00 30.96 1.89
4340 6395 3.125146 GCGATTGTGTGACTTGAGCAATA 59.875 43.478 0.00 0.00 30.96 1.90
4341 6396 2.095567 GCGATTGTGTGACTTGAGCAAT 60.096 45.455 0.00 0.00 33.14 3.56
4342 6397 1.264020 GCGATTGTGTGACTTGAGCAA 59.736 47.619 0.00 0.00 0.00 3.91
4343 6398 0.867746 GCGATTGTGTGACTTGAGCA 59.132 50.000 0.00 0.00 0.00 4.26
4344 6399 0.166814 GGCGATTGTGTGACTTGAGC 59.833 55.000 0.00 0.00 0.00 4.26
4345 6400 1.195448 GTGGCGATTGTGTGACTTGAG 59.805 52.381 0.00 0.00 0.00 3.02
4346 6401 1.225855 GTGGCGATTGTGTGACTTGA 58.774 50.000 0.00 0.00 0.00 3.02
4347 6402 0.110688 CGTGGCGATTGTGTGACTTG 60.111 55.000 0.00 0.00 0.00 3.16
4348 6403 1.841663 GCGTGGCGATTGTGTGACTT 61.842 55.000 0.00 0.00 0.00 3.01
4349 6404 2.317609 GCGTGGCGATTGTGTGACT 61.318 57.895 0.00 0.00 0.00 3.41
4350 6405 2.173382 GCGTGGCGATTGTGTGAC 59.827 61.111 0.00 0.00 0.00 3.67
4361 6416 0.237235 TTTGATTTGAGTCGCGTGGC 59.763 50.000 5.77 0.00 0.00 5.01
4362 6417 1.262950 TGTTTGATTTGAGTCGCGTGG 59.737 47.619 5.77 0.00 0.00 4.94
4363 6418 2.661504 TGTTTGATTTGAGTCGCGTG 57.338 45.000 5.77 0.00 0.00 5.34
4364 6419 5.351233 TTTATGTTTGATTTGAGTCGCGT 57.649 34.783 5.77 0.00 0.00 6.01
4365 6420 6.359617 ACTTTTTATGTTTGATTTGAGTCGCG 59.640 34.615 0.00 0.00 0.00 5.87
4366 6421 7.623268 ACTTTTTATGTTTGATTTGAGTCGC 57.377 32.000 0.00 0.00 0.00 5.19
4378 6433 9.927668 CCCTTGACAATCATACTTTTTATGTTT 57.072 29.630 0.00 0.00 0.00 2.83
4379 6434 8.034804 GCCCTTGACAATCATACTTTTTATGTT 58.965 33.333 0.00 0.00 0.00 2.71
4380 6435 7.363793 GGCCCTTGACAATCATACTTTTTATGT 60.364 37.037 0.00 0.00 0.00 2.29
4381 6436 6.980397 GGCCCTTGACAATCATACTTTTTATG 59.020 38.462 0.00 0.00 0.00 1.90
4382 6437 6.897413 AGGCCCTTGACAATCATACTTTTTAT 59.103 34.615 0.00 0.00 0.00 1.40
4383 6438 6.252995 AGGCCCTTGACAATCATACTTTTTA 58.747 36.000 0.00 0.00 0.00 1.52
4384 6439 5.086621 AGGCCCTTGACAATCATACTTTTT 58.913 37.500 0.00 0.00 0.00 1.94
4385 6440 4.677182 AGGCCCTTGACAATCATACTTTT 58.323 39.130 0.00 0.00 0.00 2.27
4386 6441 4.273318 GAGGCCCTTGACAATCATACTTT 58.727 43.478 0.00 0.00 0.00 2.66
4387 6442 3.682718 CGAGGCCCTTGACAATCATACTT 60.683 47.826 0.00 0.00 0.00 2.24
4388 6443 2.158900 CGAGGCCCTTGACAATCATACT 60.159 50.000 0.00 0.00 0.00 2.12
4389 6444 2.213499 CGAGGCCCTTGACAATCATAC 58.787 52.381 0.00 0.00 0.00 2.39
4390 6445 1.140852 CCGAGGCCCTTGACAATCATA 59.859 52.381 0.00 0.00 0.00 2.15
4391 6446 0.107017 CCGAGGCCCTTGACAATCAT 60.107 55.000 0.00 0.00 0.00 2.45
4392 6447 1.299648 CCGAGGCCCTTGACAATCA 59.700 57.895 0.00 0.00 0.00 2.57
4393 6448 1.026718 CACCGAGGCCCTTGACAATC 61.027 60.000 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.