Multiple sequence alignment - TraesCS4A01G358400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G358400 chr4A 100.000 5645 0 0 1 5645 631646788 631641144 0.000000e+00 10425
1 TraesCS4A01G358400 chr4A 99.617 261 1 0 359 619 631661171 631660911 1.420000e-130 477
2 TraesCS4A01G358400 chr4A 95.294 255 12 0 362 616 54580375 54580629 6.810000e-109 405
3 TraesCS4A01G358400 chr5D 94.786 4392 158 23 620 4979 538162420 538166772 0.000000e+00 6776
4 TraesCS4A01G358400 chr5D 90.553 434 22 11 4981 5397 538166857 538167288 1.780000e-154 556
5 TraesCS4A01G358400 chr5D 93.889 360 19 1 1 357 538161221 538161580 1.790000e-149 540
6 TraesCS4A01G358400 chr5D 86.496 274 31 6 4755 5026 538167227 538167496 4.280000e-76 296
7 TraesCS4A01G358400 chr5B 94.275 3738 166 24 1691 5397 679131694 679135414 0.000000e+00 5674
8 TraesCS4A01G358400 chr5B 90.306 1145 51 11 620 1740 679130596 679131704 0.000000e+00 1445
9 TraesCS4A01G358400 chr5B 89.427 227 18 3 135 357 679113333 679113557 1.200000e-71 281
10 TraesCS4A01G358400 chr5B 86.070 201 26 2 4755 4954 679135353 679135552 1.230000e-51 215
11 TraesCS4A01G358400 chr5B 80.159 252 25 11 4777 5026 679220886 679221114 1.260000e-36 165
12 TraesCS4A01G358400 chr5A 90.141 426 41 1 2353 2777 517854506 517854081 2.300000e-153 553
13 TraesCS4A01G358400 chr5A 95.000 260 13 0 360 619 84966521 84966262 5.260000e-110 409
14 TraesCS4A01G358400 chr2A 97.255 255 6 1 368 622 158367871 158367618 1.120000e-116 431
15 TraesCS4A01G358400 chr2A 95.753 259 11 0 360 618 65988813 65989071 8.750000e-113 418
16 TraesCS4A01G358400 chr2A 95.686 255 11 0 364 618 461470476 461470730 1.460000e-110 411
17 TraesCS4A01G358400 chr3A 96.484 256 9 0 364 619 450495487 450495232 1.880000e-114 424
18 TraesCS4A01G358400 chr6A 95.437 263 12 0 360 622 366048768 366048506 2.430000e-113 420
19 TraesCS4A01G358400 chr6A 94.531 256 9 4 5393 5644 1429901 1429647 1.910000e-104 390
20 TraesCS4A01G358400 chr7B 96.443 253 7 2 5392 5644 147573550 147573800 3.150000e-112 416
21 TraesCS4A01G358400 chr7B 96.787 249 6 2 5397 5644 605109075 605109322 1.130000e-111 414
22 TraesCS4A01G358400 chr7B 94.422 251 11 3 5395 5644 424051348 424051100 3.190000e-102 383
23 TraesCS4A01G358400 chr7A 95.057 263 13 0 360 622 195296210 195295948 1.130000e-111 414
24 TraesCS4A01G358400 chr4D 96.000 250 7 2 5397 5644 69135231 69135479 2.450000e-108 403
25 TraesCS4A01G358400 chr6B 95.618 251 10 1 5394 5644 599727093 599726844 8.810000e-108 401
26 TraesCS4A01G358400 chr6B 94.378 249 12 2 5397 5644 184717307 184717060 1.150000e-101 381
27 TraesCS4A01G358400 chr6D 95.582 249 9 2 5397 5644 144603256 144603503 1.140000e-106 398
28 TraesCS4A01G358400 chr3B 94.422 251 10 2 5397 5644 447984601 447984850 3.190000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G358400 chr4A 631641144 631646788 5644 True 10425.000000 10425 100.000 1 5645 1 chr4A.!!$R1 5644
1 TraesCS4A01G358400 chr5D 538161221 538167496 6275 False 2042.000000 6776 91.431 1 5397 4 chr5D.!!$F1 5396
2 TraesCS4A01G358400 chr5B 679130596 679135552 4956 False 2444.666667 5674 90.217 620 5397 3 chr5B.!!$F3 4777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.107459 GGATCTGCAGGTGAAGGGAC 60.107 60.0 15.13 0.0 0.00 4.46 F
552 556 0.107848 ACTACCGCCTCGATTTTGGG 60.108 55.0 0.00 0.0 0.00 4.12 F
553 557 0.107848 CTACCGCCTCGATTTTGGGT 60.108 55.0 0.00 0.0 0.00 4.51 F
554 558 0.108041 TACCGCCTCGATTTTGGGTC 60.108 55.0 0.00 0.0 0.00 4.46 F
612 616 0.179108 CAGTAAGGCACGGTAGCTCC 60.179 60.0 0.00 0.0 34.17 4.70 F
2482 3134 0.251634 TACTCATGCGGTGGATGCAA 59.748 50.0 0.00 0.0 46.87 4.08 F
3143 3795 0.179078 CACTCAGCAGCAGATCCTCC 60.179 60.0 0.00 0.0 0.00 4.30 F
3440 4092 0.457851 AGCCTCTTTGATCTCCGTCG 59.542 55.0 0.00 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1667 2280 0.250901 GGAAGGCTCAAGCTCCACAA 60.251 55.000 1.46 0.00 41.70 3.33 R
2088 2740 0.323633 CATCCACCTTGTGATGGCCA 60.324 55.000 8.56 8.56 35.23 5.36 R
2091 2743 1.004628 TCACCATCCACCTTGTGATGG 59.995 52.381 15.15 15.15 41.89 3.51 R
2482 3134 2.293318 TGCTCTCCGGGTCAGCAAT 61.293 57.895 17.38 0.00 40.22 3.56 R
2560 3212 5.128171 ACCCTAATCTATACACAAGACGCAA 59.872 40.000 0.00 0.00 0.00 4.85 R
3873 4528 0.100682 GCTCAAGACACCGATAGCGA 59.899 55.000 0.00 0.00 40.82 4.93 R
4311 4966 1.270571 TGCGCAGTATCACCTTTCACA 60.271 47.619 5.66 0.00 0.00 3.58 R
5325 6093 0.035152 AATGCCAGATCCAGCGTTGA 60.035 50.000 10.40 0.00 36.87 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.424403 TATCGCCAGTGTGAACAACG 58.576 50.000 0.00 0.00 34.04 4.10
31 32 0.249699 ATCGCCAGTGTGAACAACGA 60.250 50.000 0.00 0.00 34.04 3.85
89 90 6.803320 CACATCAACTATTGACATGGTGAAAC 59.197 38.462 0.00 0.00 43.48 2.78
101 102 6.427853 TGACATGGTGAAACATCTAAGACAAG 59.572 38.462 0.00 0.00 39.98 3.16
118 119 4.631813 AGACAAGTTTATTCGAGATGGTGC 59.368 41.667 0.00 0.00 0.00 5.01
119 120 4.579869 ACAAGTTTATTCGAGATGGTGCT 58.420 39.130 0.00 0.00 0.00 4.40
120 121 4.393062 ACAAGTTTATTCGAGATGGTGCTG 59.607 41.667 0.00 0.00 0.00 4.41
147 148 3.016736 ACCATTATGGGCAAGAGAAACG 58.983 45.455 16.35 0.00 43.37 3.60
168 169 0.107459 GGATCTGCAGGTGAAGGGAC 60.107 60.000 15.13 0.00 0.00 4.46
169 170 0.615331 GATCTGCAGGTGAAGGGACA 59.385 55.000 15.13 0.00 0.00 4.02
175 176 1.462238 AGGTGAAGGGACAGCTGGT 60.462 57.895 19.93 3.31 45.03 4.00
179 180 0.842030 TGAAGGGACAGCTGGTGGAT 60.842 55.000 19.93 0.45 0.00 3.41
203 204 4.402474 GGTGGATACCTTAGCAAAGCAAAT 59.598 41.667 0.00 0.00 43.97 2.32
262 266 1.060698 GGTTCACGATAACGAGCTTGC 59.939 52.381 0.00 0.00 42.66 4.01
276 280 3.430008 GAGCTTGCGAAAATAAAGAGGC 58.570 45.455 0.00 0.00 0.00 4.70
277 281 2.819608 AGCTTGCGAAAATAAAGAGGCA 59.180 40.909 0.00 0.00 0.00 4.75
278 282 3.255642 AGCTTGCGAAAATAAAGAGGCAA 59.744 39.130 0.00 0.00 37.98 4.52
357 361 7.224557 CAGTTTACTTTCATTTGGGAAACAAGG 59.775 37.037 0.00 0.00 40.82 3.61
358 362 4.687901 ACTTTCATTTGGGAAACAAGGG 57.312 40.909 0.00 0.00 40.82 3.95
362 366 0.966179 ATTTGGGAAACAAGGGTCGC 59.034 50.000 0.00 0.00 40.82 5.19
365 369 1.228154 GGGAAACAAGGGTCGCTGT 60.228 57.895 0.00 0.00 0.00 4.40
368 372 1.407618 GGAAACAAGGGTCGCTGTTTT 59.592 47.619 14.21 7.10 43.88 2.43
369 373 2.459934 GAAACAAGGGTCGCTGTTTTG 58.540 47.619 14.21 3.00 43.88 2.44
370 374 1.757682 AACAAGGGTCGCTGTTTTGA 58.242 45.000 0.00 0.00 31.76 2.69
371 375 1.981256 ACAAGGGTCGCTGTTTTGAT 58.019 45.000 0.00 0.00 0.00 2.57
373 377 0.598065 AAGGGTCGCTGTTTTGATGC 59.402 50.000 0.00 0.00 0.00 3.91
374 378 0.250901 AGGGTCGCTGTTTTGATGCT 60.251 50.000 0.00 0.00 0.00 3.79
375 379 1.003118 AGGGTCGCTGTTTTGATGCTA 59.997 47.619 0.00 0.00 0.00 3.49
376 380 1.130561 GGGTCGCTGTTTTGATGCTAC 59.869 52.381 0.00 0.00 0.00 3.58
377 381 2.076863 GGTCGCTGTTTTGATGCTACT 58.923 47.619 0.00 0.00 0.00 2.57
378 382 2.094417 GGTCGCTGTTTTGATGCTACTC 59.906 50.000 0.00 0.00 0.00 2.59
379 383 1.992667 TCGCTGTTTTGATGCTACTCG 59.007 47.619 0.00 0.00 0.00 4.18
380 384 1.726791 CGCTGTTTTGATGCTACTCGT 59.273 47.619 0.00 0.00 0.00 4.18
381 385 2.222596 CGCTGTTTTGATGCTACTCGTC 60.223 50.000 0.00 0.00 0.00 4.20
384 388 2.984471 TGTTTTGATGCTACTCGTCGTC 59.016 45.455 0.00 0.00 33.35 4.20
385 389 3.243336 GTTTTGATGCTACTCGTCGTCT 58.757 45.455 0.00 0.00 33.35 4.18
386 390 3.570926 TTTGATGCTACTCGTCGTCTT 57.429 42.857 0.00 0.00 33.35 3.01
387 391 2.544480 TGATGCTACTCGTCGTCTTG 57.456 50.000 0.00 0.00 33.35 3.02
389 393 3.004862 TGATGCTACTCGTCGTCTTGTA 58.995 45.455 0.00 0.00 33.35 2.41
390 394 3.626217 TGATGCTACTCGTCGTCTTGTAT 59.374 43.478 0.00 0.00 33.35 2.29
391 395 3.670311 TGCTACTCGTCGTCTTGTATC 57.330 47.619 0.00 0.00 0.00 2.24
393 397 2.353889 GCTACTCGTCGTCTTGTATCCA 59.646 50.000 0.00 0.00 0.00 3.41
395 399 3.213249 ACTCGTCGTCTTGTATCCAAC 57.787 47.619 0.00 0.00 0.00 3.77
396 400 2.555325 ACTCGTCGTCTTGTATCCAACA 59.445 45.455 0.00 0.00 35.88 3.33
408 412 5.437289 TGTATCCAACAAGCTTGAGTTTG 57.563 39.130 32.50 23.73 41.21 2.93
409 413 2.869233 TCCAACAAGCTTGAGTTTGC 57.131 45.000 32.50 0.00 39.43 3.68
411 415 2.358898 TCCAACAAGCTTGAGTTTGCTC 59.641 45.455 32.50 0.00 39.43 4.26
434 438 8.133754 CTCAATTCAGAGCTCTTATGAAGAAG 57.866 38.462 15.27 10.28 36.47 2.85
436 440 8.099537 TCAATTCAGAGCTCTTATGAAGAAGTT 58.900 33.333 15.27 4.42 36.47 2.66
437 441 9.376075 CAATTCAGAGCTCTTATGAAGAAGTTA 57.624 33.333 15.27 0.00 36.47 2.24
439 443 8.939201 TTCAGAGCTCTTATGAAGAAGTTATG 57.061 34.615 15.27 0.00 37.02 1.90
441 445 6.202570 CAGAGCTCTTATGAAGAAGTTATGGC 59.797 42.308 15.27 0.00 37.02 4.40
443 447 6.054295 AGCTCTTATGAAGAAGTTATGGCAG 58.946 40.000 0.00 0.00 37.02 4.85
444 448 5.819901 GCTCTTATGAAGAAGTTATGGCAGT 59.180 40.000 0.00 0.00 37.02 4.40
446 450 7.466590 GCTCTTATGAAGAAGTTATGGCAGTTC 60.467 40.741 0.00 0.00 37.02 3.01
447 451 7.624549 TCTTATGAAGAAGTTATGGCAGTTCT 58.375 34.615 0.00 0.00 37.96 3.01
448 452 7.550551 TCTTATGAAGAAGTTATGGCAGTTCTG 59.449 37.037 0.00 0.00 36.69 3.02
449 453 4.326826 TGAAGAAGTTATGGCAGTTCTGG 58.673 43.478 0.00 0.00 36.69 3.86
451 455 4.373156 AGAAGTTATGGCAGTTCTGGTT 57.627 40.909 0.00 0.00 35.48 3.67
453 457 5.140454 AGAAGTTATGGCAGTTCTGGTTTT 58.860 37.500 0.00 0.00 35.48 2.43
455 459 4.729868 AGTTATGGCAGTTCTGGTTTTCT 58.270 39.130 0.00 0.00 0.00 2.52
456 460 4.762251 AGTTATGGCAGTTCTGGTTTTCTC 59.238 41.667 0.00 0.00 0.00 2.87
457 461 1.981256 TGGCAGTTCTGGTTTTCTCC 58.019 50.000 1.97 0.00 0.00 3.71
458 462 1.494721 TGGCAGTTCTGGTTTTCTCCT 59.505 47.619 1.97 0.00 0.00 3.69
459 463 2.091885 TGGCAGTTCTGGTTTTCTCCTT 60.092 45.455 1.97 0.00 0.00 3.36
460 464 2.294512 GGCAGTTCTGGTTTTCTCCTTG 59.705 50.000 1.97 0.00 0.00 3.61
461 465 2.287849 GCAGTTCTGGTTTTCTCCTTGC 60.288 50.000 1.97 0.00 0.00 4.01
462 466 2.031682 CAGTTCTGGTTTTCTCCTTGCG 60.032 50.000 0.00 0.00 0.00 4.85
463 467 1.266989 GTTCTGGTTTTCTCCTTGCGG 59.733 52.381 0.00 0.00 0.00 5.69
464 468 0.472471 TCTGGTTTTCTCCTTGCGGT 59.528 50.000 0.00 0.00 0.00 5.68
465 469 1.695242 TCTGGTTTTCTCCTTGCGGTA 59.305 47.619 0.00 0.00 0.00 4.02
466 470 2.076863 CTGGTTTTCTCCTTGCGGTAG 58.923 52.381 0.00 0.00 0.00 3.18
468 472 2.633967 TGGTTTTCTCCTTGCGGTAGTA 59.366 45.455 0.00 0.00 0.00 1.82
470 474 2.998670 GTTTTCTCCTTGCGGTAGTACC 59.001 50.000 9.50 9.50 34.05 3.34
489 493 3.511595 CGGTCGGCAGCGGTAGTA 61.512 66.667 0.00 0.00 39.95 1.82
491 495 2.103736 GTCGGCAGCGGTAGTACC 59.896 66.667 9.50 9.50 34.05 3.34
518 522 2.650163 CGTCAAGCAGTAGTACCGC 58.350 57.895 0.00 0.00 0.00 5.68
520 524 1.794437 CGTCAAGCAGTAGTACCGCTC 60.794 57.143 11.39 0.00 34.11 5.03
521 525 0.815734 TCAAGCAGTAGTACCGCTCC 59.184 55.000 11.39 0.00 34.11 4.70
523 527 0.818296 AAGCAGTAGTACCGCTCCAG 59.182 55.000 11.39 0.00 34.11 3.86
524 528 0.323542 AGCAGTAGTACCGCTCCAGT 60.324 55.000 5.14 0.00 0.00 4.00
526 530 1.065251 GCAGTAGTACCGCTCCAGTAC 59.935 57.143 1.04 0.00 40.34 2.73
528 532 0.659957 GTAGTACCGCTCCAGTACCG 59.340 60.000 0.00 0.00 40.83 4.02
529 533 1.097547 TAGTACCGCTCCAGTACCGC 61.098 60.000 0.00 0.00 40.83 5.68
530 534 2.044650 TACCGCTCCAGTACCGCT 60.045 61.111 0.00 0.00 0.00 5.52
531 535 2.117156 TACCGCTCCAGTACCGCTC 61.117 63.158 0.00 0.00 0.00 5.03
532 536 2.547640 TACCGCTCCAGTACCGCTCT 62.548 60.000 0.00 0.00 0.00 4.09
533 537 1.822613 CCGCTCCAGTACCGCTCTA 60.823 63.158 0.00 0.00 0.00 2.43
534 538 1.355916 CGCTCCAGTACCGCTCTAC 59.644 63.158 0.00 0.00 0.00 2.59
535 539 1.096386 CGCTCCAGTACCGCTCTACT 61.096 60.000 0.00 0.00 0.00 2.57
536 540 1.809271 CGCTCCAGTACCGCTCTACTA 60.809 57.143 0.00 0.00 0.00 1.82
537 541 1.603326 GCTCCAGTACCGCTCTACTAC 59.397 57.143 0.00 0.00 0.00 2.73
538 542 2.220313 CTCCAGTACCGCTCTACTACC 58.780 57.143 0.00 0.00 0.00 3.18
541 545 0.817229 AGTACCGCTCTACTACCGCC 60.817 60.000 0.00 0.00 0.00 6.13
543 547 0.533755 TACCGCTCTACTACCGCCTC 60.534 60.000 0.00 0.00 0.00 4.70
544 548 2.632541 CGCTCTACTACCGCCTCG 59.367 66.667 0.00 0.00 0.00 4.63
545 549 1.886313 CGCTCTACTACCGCCTCGA 60.886 63.158 0.00 0.00 0.00 4.04
546 550 1.229315 CGCTCTACTACCGCCTCGAT 61.229 60.000 0.00 0.00 0.00 3.59
551 555 2.100252 TCTACTACCGCCTCGATTTTGG 59.900 50.000 0.00 0.00 0.00 3.28
552 556 0.107848 ACTACCGCCTCGATTTTGGG 60.108 55.000 0.00 0.00 0.00 4.12
553 557 0.107848 CTACCGCCTCGATTTTGGGT 60.108 55.000 0.00 0.00 0.00 4.51
554 558 0.108041 TACCGCCTCGATTTTGGGTC 60.108 55.000 0.00 0.00 0.00 4.46
555 559 2.112815 CCGCCTCGATTTTGGGTCC 61.113 63.158 0.00 0.00 0.00 4.46
556 560 1.078426 CGCCTCGATTTTGGGTCCT 60.078 57.895 0.00 0.00 0.00 3.85
557 561 1.369091 CGCCTCGATTTTGGGTCCTG 61.369 60.000 0.00 0.00 0.00 3.86
558 562 1.657751 GCCTCGATTTTGGGTCCTGC 61.658 60.000 0.00 0.00 0.00 4.85
559 563 0.322456 CCTCGATTTTGGGTCCTGCA 60.322 55.000 0.00 0.00 0.00 4.41
562 566 1.202879 TCGATTTTGGGTCCTGCACTT 60.203 47.619 0.00 0.00 0.00 3.16
563 567 1.613437 CGATTTTGGGTCCTGCACTTT 59.387 47.619 0.00 0.00 0.00 2.66
564 568 2.035832 CGATTTTGGGTCCTGCACTTTT 59.964 45.455 0.00 0.00 0.00 2.27
565 569 3.492482 CGATTTTGGGTCCTGCACTTTTT 60.492 43.478 0.00 0.00 0.00 1.94
581 585 3.066203 ACTTTTTGTGTCGGGTTTAGCAG 59.934 43.478 0.00 0.00 0.00 4.24
583 587 3.472283 TTTGTGTCGGGTTTAGCAGTA 57.528 42.857 0.00 0.00 0.00 2.74
584 588 2.736144 TGTGTCGGGTTTAGCAGTAG 57.264 50.000 0.00 0.00 0.00 2.57
585 589 1.965643 TGTGTCGGGTTTAGCAGTAGT 59.034 47.619 0.00 0.00 0.00 2.73
586 590 2.366266 TGTGTCGGGTTTAGCAGTAGTT 59.634 45.455 0.00 0.00 0.00 2.24
587 591 2.735134 GTGTCGGGTTTAGCAGTAGTTG 59.265 50.000 0.00 0.00 0.00 3.16
597 601 3.507597 CAGTAGTTGCACGGCAGTA 57.492 52.632 0.00 0.00 40.61 2.74
598 602 1.790755 CAGTAGTTGCACGGCAGTAA 58.209 50.000 0.00 0.00 40.61 2.24
599 603 1.726791 CAGTAGTTGCACGGCAGTAAG 59.273 52.381 0.00 0.00 40.61 2.34
600 604 1.076332 GTAGTTGCACGGCAGTAAGG 58.924 55.000 0.00 0.00 40.61 2.69
601 605 0.672401 TAGTTGCACGGCAGTAAGGC 60.672 55.000 0.00 0.00 40.61 4.35
602 606 2.112087 TTGCACGGCAGTAAGGCA 59.888 55.556 0.00 0.00 44.47 4.75
603 607 2.258013 TTGCACGGCAGTAAGGCAC 61.258 57.895 0.07 0.00 44.47 5.01
604 608 3.788766 GCACGGCAGTAAGGCACG 61.789 66.667 0.00 0.00 44.47 5.34
605 609 3.118454 CACGGCAGTAAGGCACGG 61.118 66.667 0.00 0.00 44.47 4.94
606 610 3.622826 ACGGCAGTAAGGCACGGT 61.623 61.111 0.00 0.00 44.47 4.83
607 611 2.277591 ACGGCAGTAAGGCACGGTA 61.278 57.895 0.00 0.00 44.47 4.02
608 612 1.518572 CGGCAGTAAGGCACGGTAG 60.519 63.158 0.00 0.00 44.47 3.18
609 613 1.814169 GGCAGTAAGGCACGGTAGC 60.814 63.158 0.00 0.00 43.51 3.58
610 614 1.218316 GCAGTAAGGCACGGTAGCT 59.782 57.895 0.00 0.00 34.17 3.32
611 615 0.806492 GCAGTAAGGCACGGTAGCTC 60.806 60.000 0.00 0.00 34.17 4.09
612 616 0.179108 CAGTAAGGCACGGTAGCTCC 60.179 60.000 0.00 0.00 34.17 4.70
622 626 2.501492 GGTAGCTCCGCCTACAAGA 58.499 57.895 0.00 0.00 39.52 3.02
624 628 1.000052 GGTAGCTCCGCCTACAAGATC 60.000 57.143 0.00 0.00 39.52 2.75
625 629 1.000052 GTAGCTCCGCCTACAAGATCC 60.000 57.143 0.00 0.00 38.04 3.36
626 630 0.397816 AGCTCCGCCTACAAGATCCT 60.398 55.000 0.00 0.00 0.00 3.24
640 1220 7.659390 CCTACAAGATCCTAATTCCTAAGCAAG 59.341 40.741 0.00 0.00 0.00 4.01
652 1232 6.817765 TTCCTAAGCAAGTAAAATCACCAG 57.182 37.500 0.00 0.00 0.00 4.00
653 1233 5.253330 TCCTAAGCAAGTAAAATCACCAGG 58.747 41.667 0.00 0.00 0.00 4.45
706 1287 1.133809 TCCAACACAAGGAGGAGGGG 61.134 60.000 0.00 0.00 0.00 4.79
707 1288 1.133809 CCAACACAAGGAGGAGGGGA 61.134 60.000 0.00 0.00 0.00 4.81
708 1289 0.326264 CAACACAAGGAGGAGGGGAG 59.674 60.000 0.00 0.00 0.00 4.30
710 1291 2.285743 ACAAGGAGGAGGGGAGCC 60.286 66.667 0.00 0.00 0.00 4.70
711 1292 3.474570 CAAGGAGGAGGGGAGCCG 61.475 72.222 0.00 0.00 0.00 5.52
714 1307 3.157949 GGAGGAGGGGAGCCGAAG 61.158 72.222 0.00 0.00 0.00 3.79
731 1324 4.062293 CCGAAGAAAAACCCCAAATTTCC 58.938 43.478 0.00 0.00 34.39 3.13
792 1388 1.991070 CCTAGCCCATCCAAGATCCAT 59.009 52.381 0.00 0.00 0.00 3.41
794 1390 0.399454 AGCCCATCCAAGATCCATCG 59.601 55.000 0.00 0.00 0.00 3.84
795 1391 0.397941 GCCCATCCAAGATCCATCGA 59.602 55.000 0.00 0.00 0.00 3.59
796 1392 1.004044 GCCCATCCAAGATCCATCGAT 59.996 52.381 0.00 0.00 0.00 3.59
939 1549 2.450345 GCCCGCCGTAAAAGACTCG 61.450 63.158 0.00 0.00 0.00 4.18
958 1568 1.602377 CGATTTTTATCCCACCTCGGC 59.398 52.381 0.00 0.00 0.00 5.54
959 1569 2.745152 CGATTTTTATCCCACCTCGGCT 60.745 50.000 0.00 0.00 0.00 5.52
960 1570 2.122783 TTTTTATCCCACCTCGGCTG 57.877 50.000 0.00 0.00 0.00 4.85
961 1571 0.393808 TTTTATCCCACCTCGGCTGC 60.394 55.000 0.00 0.00 0.00 5.25
962 1572 2.265467 TTTATCCCACCTCGGCTGCC 62.265 60.000 9.11 9.11 0.00 4.85
1285 1898 3.577313 GCTTCTTCCGCATCGCCC 61.577 66.667 0.00 0.00 0.00 6.13
1608 2221 8.091449 AGTGATTTGGTAAATCTCTCGGATATC 58.909 37.037 13.53 0.00 44.14 1.63
1615 2228 5.736951 AAATCTCTCGGATATCTCCTTGG 57.263 43.478 2.05 0.00 39.65 3.61
1654 2267 0.540923 AGCTGAGGATTCTGGTGCTC 59.459 55.000 0.00 0.00 37.12 4.26
1666 2279 1.227943 GGTGCTCAGGCTGTCAACA 60.228 57.895 15.27 5.94 39.59 3.33
1667 2280 0.607489 GGTGCTCAGGCTGTCAACAT 60.607 55.000 15.27 0.00 39.59 2.71
1676 2289 1.242076 GCTGTCAACATTGTGGAGCT 58.758 50.000 0.00 0.00 0.00 4.09
1913 2565 4.241681 GTCAGTTCTACAGAAGCAGAAGG 58.758 47.826 0.00 0.00 34.27 3.46
1916 2568 5.717178 TCAGTTCTACAGAAGCAGAAGGTAT 59.283 40.000 0.00 0.00 34.27 2.73
1920 2572 2.716217 ACAGAAGCAGAAGGTATTGGC 58.284 47.619 0.00 0.00 0.00 4.52
2031 2683 0.895100 TTGCCACAAGAGATGCCACC 60.895 55.000 0.00 0.00 0.00 4.61
2091 2743 3.626028 CAGTTTACTGTTGAAGGTGGC 57.374 47.619 1.69 0.00 39.09 5.01
2125 2777 2.198827 TGGTGAAACTGATGGCGATT 57.801 45.000 0.00 0.00 36.74 3.34
2132 2784 5.065218 GTGAAACTGATGGCGATTATGAACT 59.935 40.000 0.00 0.00 0.00 3.01
2148 2800 2.807967 TGAACTTTCTGATGAACCTGCG 59.192 45.455 0.00 0.00 31.02 5.18
2210 2862 3.760684 CCTGGAAAAGAAATGGAGGACAG 59.239 47.826 0.00 0.00 0.00 3.51
2236 2888 2.839098 CCTCCAAGGGCACACACT 59.161 61.111 0.00 0.00 0.00 3.55
2242 2894 0.385390 CAAGGGCACACACTTTGGTC 59.615 55.000 0.00 0.00 0.00 4.02
2298 2950 6.876257 GTGATTATGAAGTTGAGGAGTTGAGT 59.124 38.462 0.00 0.00 0.00 3.41
2417 3069 3.266510 TGAAACCTCTGATTCCATCCG 57.733 47.619 0.00 0.00 0.00 4.18
2482 3134 0.251634 TACTCATGCGGTGGATGCAA 59.748 50.000 0.00 0.00 46.87 4.08
2560 3212 3.627577 GGACATGGCACGAATCAAGTATT 59.372 43.478 0.00 0.00 0.00 1.89
2613 3265 3.428999 CCGAACATCAGGTACCTGTACAG 60.429 52.174 35.34 25.40 43.96 2.74
2637 3289 3.250280 TGTTATATCGGCTCAGTCTCGTC 59.750 47.826 0.00 0.00 0.00 4.20
2716 3368 1.605738 AGGGCTTTGCAGCTTGAGG 60.606 57.895 0.00 0.00 46.44 3.86
2726 3378 0.255318 CAGCTTGAGGCAGAGGGAAT 59.745 55.000 0.00 0.00 44.79 3.01
2939 3591 3.769189 TGGGACTACAGTTAGGGATGA 57.231 47.619 0.00 0.00 0.00 2.92
3039 3691 0.600255 GGATCGATACCCAACGGCAG 60.600 60.000 0.00 0.00 0.00 4.85
3054 3706 2.047844 CAGGGTGCTGACGACCTG 60.048 66.667 0.00 0.00 43.87 4.00
3069 3721 2.680805 CGACCTGTCCCTATTGCAATGT 60.681 50.000 22.27 8.29 0.00 2.71
3102 3754 0.771127 TAGGCCTGCCAATATGGTCC 59.229 55.000 17.99 0.00 40.46 4.46
3105 3757 1.035139 GCCTGCCAATATGGTCCAAG 58.965 55.000 0.00 0.00 40.46 3.61
3143 3795 0.179078 CACTCAGCAGCAGATCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
3176 3828 3.053619 CCTAGTGGCTCCCCAATTAACTT 60.054 47.826 0.00 0.00 44.33 2.66
3423 4075 3.123620 CGTGCTGCTCCTCCAAGC 61.124 66.667 0.00 0.00 42.82 4.01
3440 4092 0.457851 AGCCTCTTTGATCTCCGTCG 59.542 55.000 0.00 0.00 0.00 5.12
3744 4396 5.741040 GCGCAGAAGATTAAAGGAAATGAAG 59.259 40.000 0.30 0.00 0.00 3.02
3745 4397 6.403636 GCGCAGAAGATTAAAGGAAATGAAGA 60.404 38.462 0.30 0.00 0.00 2.87
3746 4398 7.530010 CGCAGAAGATTAAAGGAAATGAAGAA 58.470 34.615 0.00 0.00 0.00 2.52
3763 4418 3.557228 AGAAGAGTGAGGGCAATGATC 57.443 47.619 0.00 0.00 0.00 2.92
3779 4434 5.506815 GCAATGATCATGATGTACTTGTGGG 60.507 44.000 14.30 0.00 0.00 4.61
3780 4435 3.544684 TGATCATGATGTACTTGTGGGC 58.455 45.455 14.30 0.00 0.00 5.36
3810 4465 4.371855 TCCTGATGACGAGTATGACAAC 57.628 45.455 0.00 0.00 0.00 3.32
3813 4468 4.016113 TGATGACGAGTATGACAACGAG 57.984 45.455 0.00 0.00 0.00 4.18
3858 4513 4.142004 GCCTTGCCATCTTCATTTGATTCT 60.142 41.667 0.00 0.00 0.00 2.40
3864 4519 6.183360 TGCCATCTTCATTTGATTCTGATGAC 60.183 38.462 0.00 0.00 33.74 3.06
3867 4522 4.877823 TCTTCATTTGATTCTGATGACCCG 59.122 41.667 3.15 0.00 30.10 5.28
3872 4527 4.771114 TTGATTCTGATGACCCGGTATT 57.229 40.909 0.00 0.00 0.00 1.89
3873 4528 4.771114 TGATTCTGATGACCCGGTATTT 57.229 40.909 0.00 0.00 0.00 1.40
4020 4675 3.806949 TTTCCAGCTTCTATGTGGGTT 57.193 42.857 0.00 0.00 31.70 4.11
4113 4768 0.600057 CTTCAACCCTTGCAGGCTTC 59.400 55.000 0.00 0.00 32.73 3.86
4149 4804 0.472044 TGGACCAGCTTGCTTACACA 59.528 50.000 0.00 0.00 0.00 3.72
4260 4915 3.023119 TGGAGCAAAGCTTGAAGACAAA 58.977 40.909 0.00 0.00 39.88 2.83
4311 4966 1.153168 AAACGCTGGTGCTGTGTCT 60.153 52.632 0.00 0.00 36.97 3.41
4336 4991 0.179073 AGGTGATACTGCGCATGGAC 60.179 55.000 12.24 4.08 0.00 4.02
4341 4996 1.594862 GATACTGCGCATGGACTGAAC 59.405 52.381 12.24 0.00 0.00 3.18
4600 5255 6.014584 AGGTGTCTATTCGATGGCAATGTATA 60.015 38.462 0.00 0.00 0.00 1.47
4703 5367 6.457159 TTTTTATCCCTGTCCCTCTTGTTA 57.543 37.500 0.00 0.00 0.00 2.41
4728 5392 8.392372 AGAGTTTCCAGTTGTTCTATTAAACC 57.608 34.615 0.00 0.00 0.00 3.27
4739 5403 8.403236 GTTGTTCTATTAAACCACTGTTGAAGT 58.597 33.333 0.00 0.00 40.93 3.01
4846 5510 7.496920 CAGAGTAGATGCCTATGATTTTGTTGA 59.503 37.037 0.00 0.00 0.00 3.18
4874 5538 6.237901 TGCTGGCGATAAATATTTCTGGTAT 58.762 36.000 3.39 0.00 0.00 2.73
4922 5586 2.833794 TGTGCAACTGTCTACCTGTTC 58.166 47.619 0.00 0.00 38.04 3.18
4925 5590 2.698274 TGCAACTGTCTACCTGTTCAGA 59.302 45.455 1.00 0.00 33.43 3.27
5042 5796 9.672673 GTCCAAGAATGCATATATTATACCACT 57.327 33.333 0.00 0.00 0.00 4.00
5056 5818 1.821216 ACCACTTATTTGTGCTCGGG 58.179 50.000 0.00 0.00 36.68 5.14
5158 5924 2.122783 TTAGGCCAATAGCGCTTTGT 57.877 45.000 18.68 7.13 45.17 2.83
5208 5974 6.634805 TGACTATTGTGTCAGGATTTCTCTC 58.365 40.000 0.00 0.00 41.43 3.20
5241 6007 0.171007 GGATGAATGTTGTGGGTGCG 59.829 55.000 0.00 0.00 0.00 5.34
5252 6018 1.885388 TGGGTGCGTCGACTTGTTG 60.885 57.895 14.70 0.00 0.00 3.33
5287 6055 0.842467 CCTCACTCCTCCAACCCCTT 60.842 60.000 0.00 0.00 0.00 3.95
5325 6093 1.763120 TGCCTCAACCAGCAGACAT 59.237 52.632 0.00 0.00 33.08 3.06
5346 6114 0.322816 AACGCTGGATCTGGCATTGT 60.323 50.000 10.09 0.00 0.00 2.71
5364 6141 6.324819 GCATTGTATGTTTGACATAGCTTGT 58.675 36.000 0.00 0.00 41.31 3.16
5365 6142 7.415095 GGCATTGTATGTTTGACATAGCTTGTA 60.415 37.037 0.00 0.00 41.31 2.41
5402 6179 5.418524 ACATGTATGTGGCAAATAAGAGCAA 59.581 36.000 0.00 0.00 40.03 3.91
5404 6181 5.009631 TGTATGTGGCAAATAAGAGCAACT 58.990 37.500 0.00 0.00 35.69 3.16
5405 6182 4.708726 ATGTGGCAAATAAGAGCAACTC 57.291 40.909 0.00 0.00 35.69 3.01
5406 6183 2.819608 TGTGGCAAATAAGAGCAACTCC 59.180 45.455 0.00 0.00 35.69 3.85
5407 6184 2.819608 GTGGCAAATAAGAGCAACTCCA 59.180 45.455 0.00 0.00 31.93 3.86
5409 6186 3.255642 TGGCAAATAAGAGCAACTCCAAC 59.744 43.478 0.00 0.00 0.00 3.77
5410 6187 3.492313 GCAAATAAGAGCAACTCCAACG 58.508 45.455 0.00 0.00 0.00 4.10
5411 6188 3.670627 GCAAATAAGAGCAACTCCAACGG 60.671 47.826 0.00 0.00 0.00 4.44
5417 6194 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
5436 6213 4.659874 CAAACGGACGCGCGCTTT 62.660 61.111 32.58 19.12 0.00 3.51
5437 6214 4.659874 AAACGGACGCGCGCTTTG 62.660 61.111 32.58 19.69 0.00 2.77
5449 6226 3.250220 CGCTTTGTCCGCTTTTTGT 57.750 47.368 0.00 0.00 0.00 2.83
5451 6228 1.487482 GCTTTGTCCGCTTTTTGTCC 58.513 50.000 0.00 0.00 0.00 4.02
5453 6230 1.064952 CTTTGTCCGCTTTTTGTCCGT 59.935 47.619 0.00 0.00 0.00 4.69
5456 6233 1.202200 TGTCCGCTTTTTGTCCGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
5457 6234 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
5458 6235 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
5459 6236 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
5460 6237 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
5461 6238 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
5463 6240 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
5464 6241 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
5465 6242 4.629523 GTCCGTTTGGGTCGGCCA 62.630 66.667 9.07 0.00 46.49 5.36
5466 6243 4.323477 TCCGTTTGGGTCGGCCAG 62.323 66.667 9.07 0.00 46.49 4.85
5495 6272 2.949965 CGCGTCCGCATTTTAAAATG 57.050 45.000 28.85 28.85 46.55 2.32
5504 6281 3.595173 GCATTTTAAAATGGGTCGGCTT 58.405 40.909 31.89 0.97 44.54 4.35
5505 6282 3.370672 GCATTTTAAAATGGGTCGGCTTG 59.629 43.478 31.89 12.85 44.54 4.01
5506 6283 4.815269 CATTTTAAAATGGGTCGGCTTGA 58.185 39.130 26.58 0.00 41.54 3.02
5507 6284 4.625311 CATTTTAAAATGGGTCGGCTTGAC 59.375 41.667 26.58 1.60 41.54 3.18
5527 6304 4.452733 CTCAACGGGGAGGCCGAC 62.453 72.222 0.00 0.00 34.52 4.79
5538 6315 3.509659 GGCCGACCTAAATGTGCC 58.490 61.111 0.00 0.00 0.00 5.01
5539 6316 2.469516 GGCCGACCTAAATGTGCCG 61.470 63.158 0.00 0.00 0.00 5.69
5540 6317 2.469516 GCCGACCTAAATGTGCCGG 61.470 63.158 0.00 0.00 39.88 6.13
5541 6318 2.469516 CCGACCTAAATGTGCCGGC 61.470 63.158 22.73 22.73 0.00 6.13
5542 6319 2.808958 CGACCTAAATGTGCCGGCG 61.809 63.158 23.90 7.09 0.00 6.46
5543 6320 1.743995 GACCTAAATGTGCCGGCGT 60.744 57.895 23.90 10.86 0.00 5.68
5544 6321 1.977594 GACCTAAATGTGCCGGCGTG 61.978 60.000 23.90 5.88 0.00 5.34
5545 6322 1.743623 CCTAAATGTGCCGGCGTGA 60.744 57.895 23.90 8.30 0.00 4.35
5546 6323 1.302383 CCTAAATGTGCCGGCGTGAA 61.302 55.000 23.90 7.35 0.00 3.18
5547 6324 0.519519 CTAAATGTGCCGGCGTGAAA 59.480 50.000 23.90 5.28 0.00 2.69
5549 6326 0.103208 AAATGTGCCGGCGTGAAAAA 59.897 45.000 23.90 0.00 0.00 1.94
5573 6350 7.532682 AAAACAAGTTGCACGAAATAAACAT 57.467 28.000 1.81 0.00 0.00 2.71
5574 6351 8.635877 AAAACAAGTTGCACGAAATAAACATA 57.364 26.923 1.81 0.00 0.00 2.29
5576 6353 8.635877 AACAAGTTGCACGAAATAAACATAAA 57.364 26.923 1.81 0.00 0.00 1.40
5578 6355 9.255304 ACAAGTTGCACGAAATAAACATAAAAT 57.745 25.926 1.81 0.00 0.00 1.82
5604 6381 8.696410 AAACATAATTAAACATAAAGTGGCCG 57.304 30.769 0.00 0.00 0.00 6.13
5605 6382 6.801575 ACATAATTAAACATAAAGTGGCCGG 58.198 36.000 0.00 0.00 0.00 6.13
5606 6383 6.378848 ACATAATTAAACATAAAGTGGCCGGT 59.621 34.615 1.90 0.00 0.00 5.28
5607 6384 4.976224 ATTAAACATAAAGTGGCCGGTC 57.024 40.909 0.00 0.00 0.00 4.79
5608 6385 2.279935 AAACATAAAGTGGCCGGTCA 57.720 45.000 3.51 3.51 0.00 4.02
5609 6386 2.279935 AACATAAAGTGGCCGGTCAA 57.720 45.000 12.16 0.00 0.00 3.18
5610 6387 2.279935 ACATAAAGTGGCCGGTCAAA 57.720 45.000 12.16 0.00 0.00 2.69
5611 6388 1.883926 ACATAAAGTGGCCGGTCAAAC 59.116 47.619 12.16 0.00 0.00 2.93
5612 6389 1.135803 CATAAAGTGGCCGGTCAAACG 60.136 52.381 12.16 0.00 0.00 3.60
5613 6390 1.508808 TAAAGTGGCCGGTCAAACGC 61.509 55.000 12.16 0.00 0.00 4.84
5621 6398 3.597728 GGTCAAACGCCGGCCAAA 61.598 61.111 23.46 0.00 0.00 3.28
5622 6399 2.050442 GTCAAACGCCGGCCAAAG 60.050 61.111 23.46 9.53 0.00 2.77
5623 6400 2.517402 TCAAACGCCGGCCAAAGT 60.517 55.556 23.46 10.32 0.00 2.66
5624 6401 2.050442 CAAACGCCGGCCAAAGTC 60.050 61.111 23.46 0.00 0.00 3.01
5625 6402 3.292159 AAACGCCGGCCAAAGTCC 61.292 61.111 23.46 0.00 0.00 3.85
5626 6403 4.572571 AACGCCGGCCAAAGTCCA 62.573 61.111 23.46 0.00 0.00 4.02
5629 6406 4.660938 GCCGGCCAAAGTCCACCT 62.661 66.667 18.11 0.00 0.00 4.00
5630 6407 3.074281 CCGGCCAAAGTCCACCTA 58.926 61.111 2.24 0.00 0.00 3.08
5631 6408 1.377229 CCGGCCAAAGTCCACCTAA 59.623 57.895 2.24 0.00 0.00 2.69
5632 6409 0.250989 CCGGCCAAAGTCCACCTAAA 60.251 55.000 2.24 0.00 0.00 1.85
5633 6410 1.615919 CCGGCCAAAGTCCACCTAAAT 60.616 52.381 2.24 0.00 0.00 1.40
5634 6411 1.743394 CGGCCAAAGTCCACCTAAATC 59.257 52.381 2.24 0.00 0.00 2.17
5635 6412 2.618045 CGGCCAAAGTCCACCTAAATCT 60.618 50.000 2.24 0.00 0.00 2.40
5636 6413 3.370103 CGGCCAAAGTCCACCTAAATCTA 60.370 47.826 2.24 0.00 0.00 1.98
5637 6414 4.595986 GGCCAAAGTCCACCTAAATCTAA 58.404 43.478 0.00 0.00 0.00 2.10
5638 6415 5.201243 GGCCAAAGTCCACCTAAATCTAAT 58.799 41.667 0.00 0.00 0.00 1.73
5639 6416 6.362248 GGCCAAAGTCCACCTAAATCTAATA 58.638 40.000 0.00 0.00 0.00 0.98
5640 6417 6.831868 GGCCAAAGTCCACCTAAATCTAATAA 59.168 38.462 0.00 0.00 0.00 1.40
5641 6418 7.340999 GGCCAAAGTCCACCTAAATCTAATAAA 59.659 37.037 0.00 0.00 0.00 1.40
5642 6419 8.188799 GCCAAAGTCCACCTAAATCTAATAAAC 58.811 37.037 0.00 0.00 0.00 2.01
5643 6420 9.238368 CCAAAGTCCACCTAAATCTAATAAACA 57.762 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.489679 AAATGTCCTCGTTTTCTTGCTC 57.510 40.909 0.00 0.00 29.63 4.26
31 32 5.063880 AGTAAATGTCCTCGTTTTCTTGCT 58.936 37.500 0.00 0.00 34.95 3.91
89 90 8.759641 CCATCTCGAATAAACTTGTCTTAGATG 58.240 37.037 0.00 0.00 37.45 2.90
101 102 2.939103 AGCAGCACCATCTCGAATAAAC 59.061 45.455 0.00 0.00 0.00 2.01
118 119 1.134007 TGCCCATAATGGTGAGAGCAG 60.134 52.381 0.00 0.00 35.17 4.24
119 120 0.918258 TGCCCATAATGGTGAGAGCA 59.082 50.000 0.00 0.00 35.17 4.26
120 121 1.952296 CTTGCCCATAATGGTGAGAGC 59.048 52.381 0.00 0.00 35.17 4.09
147 148 1.225704 CCTTCACCTGCAGATCCCC 59.774 63.158 17.39 0.00 0.00 4.81
168 169 0.839277 TATCCACCATCCACCAGCTG 59.161 55.000 6.78 6.78 0.00 4.24
169 170 0.839946 GTATCCACCATCCACCAGCT 59.160 55.000 0.00 0.00 0.00 4.24
203 204 8.405971 AGATGGGCCAATTGTTCCTATATATA 57.594 34.615 11.89 0.00 0.00 0.86
217 218 7.620888 CCATATTTATTAGGAAGATGGGCCAAT 59.379 37.037 11.89 0.00 40.48 3.16
218 219 6.953520 CCATATTTATTAGGAAGATGGGCCAA 59.046 38.462 11.89 0.00 40.48 4.52
219 220 6.046643 ACCATATTTATTAGGAAGATGGGCCA 59.953 38.462 9.61 9.61 45.59 5.36
220 221 6.494059 ACCATATTTATTAGGAAGATGGGCC 58.506 40.000 13.20 0.00 45.59 5.80
221 222 7.669722 TGAACCATATTTATTAGGAAGATGGGC 59.330 37.037 13.20 6.93 45.59 5.36
222 223 9.014297 GTGAACCATATTTATTAGGAAGATGGG 57.986 37.037 13.20 0.00 45.59 4.00
262 266 8.071122 TGTCAAAATTTGCCTCTTTATTTTCG 57.929 30.769 0.00 0.00 30.17 3.46
357 361 2.076863 AGTAGCATCAAAACAGCGACC 58.923 47.619 0.00 0.00 34.97 4.79
358 362 2.222596 CGAGTAGCATCAAAACAGCGAC 60.223 50.000 0.00 0.00 34.68 5.19
362 366 2.987149 ACGACGAGTAGCATCAAAACAG 59.013 45.455 0.00 0.00 0.00 3.16
365 369 3.570926 AGACGACGAGTAGCATCAAAA 57.429 42.857 0.00 0.00 0.00 2.44
368 372 1.810755 ACAAGACGACGAGTAGCATCA 59.189 47.619 0.00 0.00 0.00 3.07
369 373 2.546195 ACAAGACGACGAGTAGCATC 57.454 50.000 0.00 0.00 0.00 3.91
370 374 3.003482 GGATACAAGACGACGAGTAGCAT 59.997 47.826 0.00 0.00 0.00 3.79
371 375 2.353889 GGATACAAGACGACGAGTAGCA 59.646 50.000 0.00 0.00 0.00 3.49
386 390 6.440052 AGCAAACTCAAGCTTGTTGGATACA 61.440 40.000 25.19 3.24 41.90 2.29
387 391 4.022849 AGCAAACTCAAGCTTGTTGGATAC 60.023 41.667 25.19 11.20 38.01 2.24
389 393 2.961062 AGCAAACTCAAGCTTGTTGGAT 59.039 40.909 25.19 7.69 38.01 3.41
390 394 2.358898 GAGCAAACTCAAGCTTGTTGGA 59.641 45.455 25.19 5.87 42.04 3.53
391 395 2.735823 GAGCAAACTCAAGCTTGTTGG 58.264 47.619 25.19 17.87 42.04 3.77
409 413 7.765360 ACTTCTTCATAAGAGCTCTGAATTGAG 59.235 37.037 19.06 15.43 39.03 3.02
411 415 7.846644 ACTTCTTCATAAGAGCTCTGAATTG 57.153 36.000 19.06 12.44 39.03 2.32
413 417 9.545105 CATAACTTCTTCATAAGAGCTCTGAAT 57.455 33.333 19.06 11.50 39.03 2.57
415 419 7.495901 CCATAACTTCTTCATAAGAGCTCTGA 58.504 38.462 19.06 10.94 39.03 3.27
416 420 6.202570 GCCATAACTTCTTCATAAGAGCTCTG 59.797 42.308 19.06 6.00 39.03 3.35
417 421 6.126940 TGCCATAACTTCTTCATAAGAGCTCT 60.127 38.462 11.45 11.45 39.03 4.09
418 422 6.051717 TGCCATAACTTCTTCATAAGAGCTC 58.948 40.000 5.27 5.27 39.03 4.09
419 423 5.994250 TGCCATAACTTCTTCATAAGAGCT 58.006 37.500 0.00 0.00 39.03 4.09
420 424 5.819901 ACTGCCATAACTTCTTCATAAGAGC 59.180 40.000 0.00 0.00 39.03 4.09
421 425 7.768120 AGAACTGCCATAACTTCTTCATAAGAG 59.232 37.037 0.00 0.00 39.03 2.85
422 426 7.550551 CAGAACTGCCATAACTTCTTCATAAGA 59.449 37.037 0.00 0.00 35.26 2.10
424 428 6.599244 CCAGAACTGCCATAACTTCTTCATAA 59.401 38.462 0.00 0.00 0.00 1.90
425 429 6.115446 CCAGAACTGCCATAACTTCTTCATA 58.885 40.000 0.00 0.00 0.00 2.15
427 431 4.202461 ACCAGAACTGCCATAACTTCTTCA 60.202 41.667 0.00 0.00 0.00 3.02
428 432 4.327680 ACCAGAACTGCCATAACTTCTTC 58.672 43.478 0.00 0.00 0.00 2.87
429 433 4.373156 ACCAGAACTGCCATAACTTCTT 57.627 40.909 0.00 0.00 0.00 2.52
430 434 4.373156 AACCAGAACTGCCATAACTTCT 57.627 40.909 0.00 0.00 0.00 2.85
431 435 5.241728 AGAAAACCAGAACTGCCATAACTTC 59.758 40.000 0.00 0.00 0.00 3.01
432 436 5.140454 AGAAAACCAGAACTGCCATAACTT 58.860 37.500 0.00 0.00 0.00 2.66
433 437 4.729868 AGAAAACCAGAACTGCCATAACT 58.270 39.130 0.00 0.00 0.00 2.24
434 438 4.082733 GGAGAAAACCAGAACTGCCATAAC 60.083 45.833 0.00 0.00 0.00 1.89
436 440 3.330701 AGGAGAAAACCAGAACTGCCATA 59.669 43.478 0.00 0.00 0.00 2.74
437 441 2.108952 AGGAGAAAACCAGAACTGCCAT 59.891 45.455 0.00 0.00 0.00 4.40
438 442 1.494721 AGGAGAAAACCAGAACTGCCA 59.505 47.619 0.00 0.00 0.00 4.92
439 443 2.278332 AGGAGAAAACCAGAACTGCC 57.722 50.000 0.00 0.00 0.00 4.85
441 445 2.031682 CGCAAGGAGAAAACCAGAACTG 60.032 50.000 0.00 0.00 0.00 3.16
443 447 2.688364 CGCAAGGAGAAAACCAGAAC 57.312 50.000 0.00 0.00 0.00 3.01
473 477 2.103736 GTACTACCGCTGCCGACC 59.896 66.667 0.00 0.00 36.29 4.79
474 478 2.103736 GGTACTACCGCTGCCGAC 59.896 66.667 0.00 0.00 36.29 4.79
494 498 3.366679 GGTACTACTGCTTGACGCTACAA 60.367 47.826 0.00 0.00 40.11 2.41
495 499 2.163010 GGTACTACTGCTTGACGCTACA 59.837 50.000 0.00 0.00 40.11 2.74
496 500 2.790468 CGGTACTACTGCTTGACGCTAC 60.790 54.545 0.00 0.00 40.11 3.58
497 501 1.399440 CGGTACTACTGCTTGACGCTA 59.601 52.381 0.00 0.00 40.11 4.26
498 502 0.170561 CGGTACTACTGCTTGACGCT 59.829 55.000 0.00 0.00 40.11 5.07
500 504 2.650163 GCGGTACTACTGCTTGACG 58.350 57.895 12.15 0.00 46.62 4.35
507 511 1.674962 GGTACTGGAGCGGTACTACTG 59.325 57.143 0.00 0.00 43.46 2.74
508 512 1.745141 CGGTACTGGAGCGGTACTACT 60.745 57.143 3.00 0.00 43.46 2.57
509 513 0.659957 CGGTACTGGAGCGGTACTAC 59.340 60.000 3.00 0.00 43.46 2.73
517 521 1.603326 GTAGTAGAGCGGTACTGGAGC 59.397 57.143 3.34 0.00 34.91 4.70
518 522 2.220313 GGTAGTAGAGCGGTACTGGAG 58.780 57.143 3.34 0.00 34.91 3.86
520 524 0.942962 CGGTAGTAGAGCGGTACTGG 59.057 60.000 3.34 0.00 45.37 4.00
528 532 0.953003 AATCGAGGCGGTAGTAGAGC 59.047 55.000 0.00 0.00 0.00 4.09
529 533 3.372954 CAAAATCGAGGCGGTAGTAGAG 58.627 50.000 0.00 0.00 0.00 2.43
530 534 2.100252 CCAAAATCGAGGCGGTAGTAGA 59.900 50.000 0.00 0.00 0.00 2.59
531 535 2.470821 CCAAAATCGAGGCGGTAGTAG 58.529 52.381 0.00 0.00 0.00 2.57
532 536 1.137479 CCCAAAATCGAGGCGGTAGTA 59.863 52.381 0.00 0.00 0.00 1.82
533 537 0.107848 CCCAAAATCGAGGCGGTAGT 60.108 55.000 0.00 0.00 0.00 2.73
534 538 0.107848 ACCCAAAATCGAGGCGGTAG 60.108 55.000 0.00 0.00 0.00 3.18
535 539 0.108041 GACCCAAAATCGAGGCGGTA 60.108 55.000 0.00 0.00 0.00 4.02
536 540 1.376812 GACCCAAAATCGAGGCGGT 60.377 57.895 0.00 0.00 0.00 5.68
537 541 2.112815 GGACCCAAAATCGAGGCGG 61.113 63.158 0.00 0.00 0.00 6.13
538 542 1.078426 AGGACCCAAAATCGAGGCG 60.078 57.895 0.00 0.00 0.00 5.52
541 545 0.804989 GTGCAGGACCCAAAATCGAG 59.195 55.000 0.00 0.00 0.00 4.04
543 547 1.247567 AAGTGCAGGACCCAAAATCG 58.752 50.000 0.00 0.00 0.00 3.34
544 548 3.751479 AAAAGTGCAGGACCCAAAATC 57.249 42.857 0.00 0.00 0.00 2.17
545 549 3.199727 ACAAAAAGTGCAGGACCCAAAAT 59.800 39.130 0.00 0.00 0.00 1.82
546 550 2.569404 ACAAAAAGTGCAGGACCCAAAA 59.431 40.909 0.00 0.00 0.00 2.44
559 563 3.018149 TGCTAAACCCGACACAAAAAGT 58.982 40.909 0.00 0.00 0.00 2.66
562 566 2.645802 ACTGCTAAACCCGACACAAAA 58.354 42.857 0.00 0.00 0.00 2.44
563 567 2.335316 ACTGCTAAACCCGACACAAA 57.665 45.000 0.00 0.00 0.00 2.83
564 568 2.366266 ACTACTGCTAAACCCGACACAA 59.634 45.455 0.00 0.00 0.00 3.33
565 569 1.965643 ACTACTGCTAAACCCGACACA 59.034 47.619 0.00 0.00 0.00 3.72
581 585 1.076332 CCTTACTGCCGTGCAACTAC 58.924 55.000 0.00 0.00 38.41 2.73
583 587 1.966451 GCCTTACTGCCGTGCAACT 60.966 57.895 0.00 0.00 38.41 3.16
584 588 2.258013 TGCCTTACTGCCGTGCAAC 61.258 57.895 0.00 0.00 38.41 4.17
585 589 2.112087 TGCCTTACTGCCGTGCAA 59.888 55.556 0.00 0.00 38.41 4.08
586 590 2.668212 GTGCCTTACTGCCGTGCA 60.668 61.111 0.00 0.00 36.92 4.57
587 591 3.788766 CGTGCCTTACTGCCGTGC 61.789 66.667 0.00 0.00 0.00 5.34
588 592 2.495366 TACCGTGCCTTACTGCCGTG 62.495 60.000 0.00 0.00 0.00 4.94
589 593 2.221906 CTACCGTGCCTTACTGCCGT 62.222 60.000 0.00 0.00 0.00 5.68
590 594 1.518572 CTACCGTGCCTTACTGCCG 60.519 63.158 0.00 0.00 0.00 5.69
591 595 1.814169 GCTACCGTGCCTTACTGCC 60.814 63.158 0.00 0.00 0.00 4.85
593 597 0.179108 GGAGCTACCGTGCCTTACTG 60.179 60.000 0.00 0.00 0.00 2.74
594 598 2.200052 GGAGCTACCGTGCCTTACT 58.800 57.895 0.00 0.00 0.00 2.24
595 599 4.829588 GGAGCTACCGTGCCTTAC 57.170 61.111 0.00 0.00 0.00 2.34
609 613 4.561105 GAATTAGGATCTTGTAGGCGGAG 58.439 47.826 0.00 0.00 0.00 4.63
610 614 3.323979 GGAATTAGGATCTTGTAGGCGGA 59.676 47.826 0.00 0.00 0.00 5.54
611 615 3.325135 AGGAATTAGGATCTTGTAGGCGG 59.675 47.826 0.00 0.00 0.00 6.13
612 616 4.608948 AGGAATTAGGATCTTGTAGGCG 57.391 45.455 0.00 0.00 0.00 5.52
614 618 7.067496 TGCTTAGGAATTAGGATCTTGTAGG 57.933 40.000 0.00 0.00 0.00 3.18
617 621 6.963322 ACTTGCTTAGGAATTAGGATCTTGT 58.037 36.000 0.00 0.00 0.00 3.16
618 622 8.964476 TTACTTGCTTAGGAATTAGGATCTTG 57.036 34.615 0.00 0.00 0.00 3.02
619 623 9.975218 TTTTACTTGCTTAGGAATTAGGATCTT 57.025 29.630 0.00 0.00 0.00 2.40
622 626 9.920946 TGATTTTACTTGCTTAGGAATTAGGAT 57.079 29.630 0.00 0.00 0.00 3.24
624 628 8.406297 GGTGATTTTACTTGCTTAGGAATTAGG 58.594 37.037 0.00 0.00 0.00 2.69
625 629 8.956426 TGGTGATTTTACTTGCTTAGGAATTAG 58.044 33.333 0.00 0.00 0.00 1.73
626 630 8.871629 TGGTGATTTTACTTGCTTAGGAATTA 57.128 30.769 0.00 0.00 0.00 1.40
640 1220 2.235016 TGTGGTGCCTGGTGATTTTAC 58.765 47.619 0.00 0.00 0.00 2.01
652 1232 1.972872 CCATAGGATCTTGTGGTGCC 58.027 55.000 11.92 0.00 0.00 5.01
653 1233 1.312815 GCCATAGGATCTTGTGGTGC 58.687 55.000 19.63 5.03 34.23 5.01
706 1287 1.324383 TTGGGGTTTTTCTTCGGCTC 58.676 50.000 0.00 0.00 0.00 4.70
707 1288 1.783071 TTTGGGGTTTTTCTTCGGCT 58.217 45.000 0.00 0.00 0.00 5.52
708 1289 2.831685 ATTTGGGGTTTTTCTTCGGC 57.168 45.000 0.00 0.00 0.00 5.54
710 1291 4.062293 GGGAAATTTGGGGTTTTTCTTCG 58.938 43.478 0.00 0.00 31.57 3.79
711 1292 5.304686 AGGGAAATTTGGGGTTTTTCTTC 57.695 39.130 0.00 0.00 31.57 2.87
714 1307 3.392947 TGGAGGGAAATTTGGGGTTTTTC 59.607 43.478 0.00 0.00 0.00 2.29
731 1324 4.026356 AGAATTGGACTCTTGTTGGAGG 57.974 45.455 0.00 0.00 37.63 4.30
939 1549 2.618709 CAGCCGAGGTGGGATAAAAATC 59.381 50.000 0.00 0.00 38.63 2.17
1173 1786 4.567385 GAGGAGGAGAGCTGCGCG 62.567 72.222 0.00 0.00 0.00 6.86
1575 2188 5.041951 GATTTACCAAATCACTGAACGCA 57.958 39.130 6.73 0.00 45.18 5.24
1608 2221 3.433306 TTACCACCATTCACCAAGGAG 57.567 47.619 0.00 0.00 0.00 3.69
1615 2228 3.081804 CTCCCTGTTTACCACCATTCAC 58.918 50.000 0.00 0.00 0.00 3.18
1654 2267 1.538512 CTCCACAATGTTGACAGCCTG 59.461 52.381 0.00 0.00 0.00 4.85
1666 2279 1.615384 GGAAGGCTCAAGCTCCACAAT 60.615 52.381 1.46 0.00 41.70 2.71
1667 2280 0.250901 GGAAGGCTCAAGCTCCACAA 60.251 55.000 1.46 0.00 41.70 3.33
1676 2289 1.881925 CGTCACCAATGGAAGGCTCAA 60.882 52.381 6.16 0.00 0.00 3.02
1748 2400 1.598130 ACGACAACTTGCTCCTGCC 60.598 57.895 0.00 0.00 38.71 4.85
1913 2565 2.790433 TGTGAACTTCAGGGCCAATAC 58.210 47.619 6.18 0.00 0.00 1.89
1916 2568 1.962807 CATTGTGAACTTCAGGGCCAA 59.037 47.619 6.18 0.00 0.00 4.52
1920 2572 2.507484 TCAGCATTGTGAACTTCAGGG 58.493 47.619 0.00 0.00 0.00 4.45
2085 2737 1.075482 CACCTTGTGATGGCCACCT 59.925 57.895 8.16 0.00 45.09 4.00
2087 2739 0.323725 ATCCACCTTGTGATGGCCAC 60.324 55.000 8.16 2.36 45.88 5.01
2088 2740 0.323633 CATCCACCTTGTGATGGCCA 60.324 55.000 8.56 8.56 35.23 5.36
2091 2743 1.004628 TCACCATCCACCTTGTGATGG 59.995 52.381 15.15 15.15 41.89 3.51
2125 2777 4.631377 CGCAGGTTCATCAGAAAGTTCATA 59.369 41.667 0.00 0.00 35.08 2.15
2132 2784 2.416747 CAGACGCAGGTTCATCAGAAA 58.583 47.619 0.00 0.00 35.08 2.52
2161 2813 2.871633 CCAAAGCATTGTTTGTCCCAAC 59.128 45.455 0.43 0.00 35.93 3.77
2210 2862 2.674380 CCTTGGAGGCAGGCACAC 60.674 66.667 0.00 0.00 0.00 3.82
2230 2882 3.795688 ATCATCCAGACCAAAGTGTGT 57.204 42.857 0.00 0.00 35.52 3.72
2234 2886 4.916041 TCTGAATCATCCAGACCAAAGT 57.084 40.909 0.00 0.00 35.89 2.66
2236 2888 5.434408 CTCATCTGAATCATCCAGACCAAA 58.566 41.667 0.00 0.00 42.68 3.28
2242 2894 5.483811 CTGATCCTCATCTGAATCATCCAG 58.516 45.833 0.00 0.00 31.13 3.86
2273 2925 6.876257 ACTCAACTCCTCAACTTCATAATCAC 59.124 38.462 0.00 0.00 0.00 3.06
2298 2950 3.864789 AAAAGCTCAGTCTCCTTTCCA 57.135 42.857 0.00 0.00 0.00 3.53
2417 3069 2.497770 CCACGGTATGGGACGGTC 59.502 66.667 0.00 0.00 45.95 4.79
2482 3134 2.293318 TGCTCTCCGGGTCAGCAAT 61.293 57.895 17.38 0.00 40.22 3.56
2560 3212 5.128171 ACCCTAATCTATACACAAGACGCAA 59.872 40.000 0.00 0.00 0.00 4.85
2613 3265 3.609644 CGAGACTGAGCCGATATAACACC 60.610 52.174 0.00 0.00 0.00 4.16
2637 3289 1.089481 TTATGCGCCTGAAGCCTTCG 61.089 55.000 4.18 0.00 38.78 3.79
2716 3368 3.389329 TCCAAGTCATCTATTCCCTCTGC 59.611 47.826 0.00 0.00 0.00 4.26
2726 3378 4.471025 TGCAGGAGAATTCCAAGTCATCTA 59.529 41.667 0.65 0.00 46.64 1.98
2841 3493 0.888736 TCACGGAACATGTTGCTGGG 60.889 55.000 25.01 19.41 0.00 4.45
2939 3591 7.553760 ACTTGAGCATTTTCCTGTTTGATTTTT 59.446 29.630 0.00 0.00 0.00 1.94
3039 3691 2.048127 GACAGGTCGTCAGCACCC 60.048 66.667 0.00 0.00 44.69 4.61
3054 3706 6.017109 CACTGGTAATACATTGCAATAGGGAC 60.017 42.308 12.53 6.84 0.00 4.46
3069 3721 3.305720 CAGGCCTAGGACACTGGTAATA 58.694 50.000 19.45 0.00 0.00 0.98
3102 3754 5.525378 GTGAGTAAGAGTGATAATGGCCTTG 59.475 44.000 3.32 0.00 0.00 3.61
3105 3757 5.163405 TGAGTGAGTAAGAGTGATAATGGCC 60.163 44.000 0.00 0.00 0.00 5.36
3143 3795 0.827368 GCCACTAGGTCCTTCAGGAG 59.173 60.000 0.00 0.00 46.49 3.69
3176 3828 3.534554 CGATGGGTCACAATCATCTCAA 58.465 45.455 0.00 0.00 36.18 3.02
3415 4067 2.421248 GGAGATCAAAGAGGCTTGGAGG 60.421 54.545 0.00 0.00 0.00 4.30
3423 4075 0.528684 GGCGACGGAGATCAAAGAGG 60.529 60.000 0.00 0.00 0.00 3.69
3440 4092 1.452833 GGAAGTGGAGGCATCTGGC 60.453 63.158 0.00 0.00 43.74 4.85
3744 4396 3.272574 TGATCATTGCCCTCACTCTTC 57.727 47.619 0.00 0.00 0.00 2.87
3745 4397 3.201487 TCATGATCATTGCCCTCACTCTT 59.799 43.478 5.16 0.00 0.00 2.85
3746 4398 2.775960 TCATGATCATTGCCCTCACTCT 59.224 45.455 5.16 0.00 0.00 3.24
3763 4418 3.695556 TCATTGCCCACAAGTACATCATG 59.304 43.478 0.00 0.00 39.69 3.07
3813 4468 3.006752 CCCAGTCTGGCATAAGAGATCTC 59.993 52.174 15.29 15.29 35.79 2.75
3858 4513 0.828022 AGCGAAATACCGGGTCATCA 59.172 50.000 6.32 0.00 0.00 3.07
3864 4519 0.316204 ACCGATAGCGAAATACCGGG 59.684 55.000 6.32 0.00 41.05 5.73
3867 4522 3.366440 AGACACCGATAGCGAAATACC 57.634 47.619 0.00 0.00 40.82 2.73
3872 4527 1.469251 GCTCAAGACACCGATAGCGAA 60.469 52.381 0.00 0.00 40.82 4.70
3873 4528 0.100682 GCTCAAGACACCGATAGCGA 59.899 55.000 0.00 0.00 40.82 4.93
4020 4675 4.410883 TCCCTCTTGTCCTTGTTAACTTGA 59.589 41.667 7.22 0.00 0.00 3.02
4113 4768 3.312421 GGTCCATCATGGTTTGTATGTCG 59.688 47.826 2.79 0.00 39.03 4.35
4177 4832 2.095059 CAGTAGTGGCATTGTTCTTGGC 60.095 50.000 0.00 0.00 39.89 4.52
4311 4966 1.270571 TGCGCAGTATCACCTTTCACA 60.271 47.619 5.66 0.00 0.00 3.58
4336 4991 1.941812 GGTTCAGCACCACGTTCAG 59.058 57.895 0.00 0.00 46.42 3.02
4600 5255 2.062971 GGATGCATCCTGTTCCACAT 57.937 50.000 34.20 0.00 43.73 3.21
4684 5348 4.016479 ACTCTAACAAGAGGGACAGGGATA 60.016 45.833 7.29 0.00 40.08 2.59
4703 5367 7.996644 TGGTTTAATAGAACAACTGGAAACTCT 59.003 33.333 0.00 0.00 32.04 3.24
4728 5392 4.035675 GGAACAGGAGAAACTTCAACAGTG 59.964 45.833 0.00 0.00 35.12 3.66
4739 5403 8.380742 AGAGATACAATAAGGAACAGGAGAAA 57.619 34.615 0.00 0.00 0.00 2.52
4821 5485 7.568349 TCAACAAAATCATAGGCATCTACTCT 58.432 34.615 0.00 0.00 0.00 3.24
4846 5510 6.127814 CCAGAAATATTTATCGCCAGCATGAT 60.128 38.462 0.00 0.00 39.69 2.45
4874 5538 9.861138 CGAAATTGCAAACTTTTCATGAATAAA 57.139 25.926 18.99 0.42 31.29 1.40
4922 5586 7.563888 AGGATAATCACACACATGAAATCTG 57.436 36.000 0.00 0.00 30.95 2.90
4925 5590 7.178983 ACCAAAGGATAATCACACACATGAAAT 59.821 33.333 0.00 0.00 30.82 2.17
5042 5796 2.169769 CCCTACTCCCGAGCACAAATAA 59.830 50.000 0.00 0.00 0.00 1.40
5048 5802 1.380112 ACTCCCTACTCCCGAGCAC 60.380 63.158 0.00 0.00 0.00 4.40
5056 5818 2.517998 AGTGACTGGACTCCCTACTC 57.482 55.000 0.00 0.00 0.00 2.59
5135 5901 3.715628 AAGCGCTATTGGCCTAAAATG 57.284 42.857 12.05 0.00 37.74 2.32
5158 5924 4.051237 CAGTCAATTTCAGAGACACGTGA 58.949 43.478 25.01 0.00 34.80 4.35
5208 5974 3.510388 TTCATCCACTAAGAGTCAGCG 57.490 47.619 0.00 0.00 0.00 5.18
5241 6007 1.166531 AAGGGCTGCAACAAGTCGAC 61.167 55.000 7.70 7.70 0.00 4.20
5252 6018 3.810188 GGGTAGGGGAAGGGCTGC 61.810 72.222 0.00 0.00 0.00 5.25
5287 6055 0.322975 GCTGCTTGTCAGAGAGGGAA 59.677 55.000 0.00 0.00 45.72 3.97
5319 6087 1.931841 CAGATCCAGCGTTGATGTCTG 59.068 52.381 0.00 7.39 0.00 3.51
5325 6093 0.035152 AATGCCAGATCCAGCGTTGA 60.035 50.000 10.40 0.00 36.87 3.18
5397 6174 3.056328 GCCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 35.39 4.26
5419 6196 4.659874 AAAGCGCGCGTCCGTTTG 62.660 61.111 32.35 0.04 36.67 2.93
5420 6197 4.659874 CAAAGCGCGCGTCCGTTT 62.660 61.111 32.35 21.22 36.67 3.60
5428 6205 4.683334 AAAGCGGACAAAGCGCGC 62.683 61.111 26.66 26.66 40.04 6.86
5429 6206 1.657181 AAAAAGCGGACAAAGCGCG 60.657 52.632 0.00 0.00 40.04 6.86
5430 6207 0.869880 ACAAAAAGCGGACAAAGCGC 60.870 50.000 0.00 0.00 40.04 5.92
5431 6208 1.120437 GACAAAAAGCGGACAAAGCG 58.880 50.000 0.00 0.00 40.04 4.68
5432 6209 1.487482 GGACAAAAAGCGGACAAAGC 58.513 50.000 0.00 0.00 0.00 3.51
5433 6210 1.064952 ACGGACAAAAAGCGGACAAAG 59.935 47.619 0.00 0.00 0.00 2.77
5434 6211 1.096416 ACGGACAAAAAGCGGACAAA 58.904 45.000 0.00 0.00 0.00 2.83
5436 6213 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.00 0.00 0.00 4.02
5437 6214 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
5439 6216 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
5440 6217 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
5441 6218 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
5442 6219 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
5475 6252 1.007524 CATTTTAAAATGCGGACGCGC 60.008 47.619 24.00 0.00 45.51 6.86
5477 6254 1.923864 CCCATTTTAAAATGCGGACGC 59.076 47.619 28.17 10.13 43.38 5.19
5478 6255 3.175929 GACCCATTTTAAAATGCGGACG 58.824 45.455 32.81 21.59 43.38 4.79
5479 6256 3.175929 CGACCCATTTTAAAATGCGGAC 58.824 45.455 32.81 28.34 43.38 4.79
5482 6259 1.923864 GCCGACCCATTTTAAAATGCG 59.076 47.619 28.17 24.84 43.38 4.73
5483 6260 3.245518 AGCCGACCCATTTTAAAATGC 57.754 42.857 28.17 18.71 43.38 3.56
5484 6261 4.625311 GTCAAGCCGACCCATTTTAAAATG 59.375 41.667 27.09 27.09 39.15 2.32
5485 6262 4.816392 GTCAAGCCGACCCATTTTAAAAT 58.184 39.130 7.64 7.64 38.85 1.82
5487 6264 3.926821 GTCAAGCCGACCCATTTTAAA 57.073 42.857 0.00 0.00 38.85 1.52
5517 6294 0.463833 CACATTTAGGTCGGCCTCCC 60.464 60.000 14.54 0.00 45.64 4.30
5519 6296 1.095807 GGCACATTTAGGTCGGCCTC 61.096 60.000 14.54 0.00 45.64 4.70
5522 6299 2.469516 CCGGCACATTTAGGTCGGC 61.470 63.158 0.00 0.00 0.00 5.54
5523 6300 2.469516 GCCGGCACATTTAGGTCGG 61.470 63.158 24.80 0.00 40.33 4.79
5524 6301 2.808958 CGCCGGCACATTTAGGTCG 61.809 63.158 28.98 0.37 0.00 4.79
5525 6302 1.743995 ACGCCGGCACATTTAGGTC 60.744 57.895 28.98 0.00 0.00 3.85
5526 6303 2.038269 CACGCCGGCACATTTAGGT 61.038 57.895 28.98 10.68 0.00 3.08
5527 6304 1.302383 TTCACGCCGGCACATTTAGG 61.302 55.000 28.98 9.93 0.00 2.69
5528 6305 0.519519 TTTCACGCCGGCACATTTAG 59.480 50.000 28.98 10.77 0.00 1.85
5530 6307 0.103208 TTTTTCACGCCGGCACATTT 59.897 45.000 28.98 0.79 0.00 2.32
5531 6308 1.736586 TTTTTCACGCCGGCACATT 59.263 47.368 28.98 3.78 0.00 2.71
5532 6309 3.437867 TTTTTCACGCCGGCACAT 58.562 50.000 28.98 8.36 0.00 3.21
5549 6326 6.952935 TGTTTATTTCGTGCAACTTGTTTT 57.047 29.167 0.00 0.00 31.75 2.43
5550 6327 8.635877 TTATGTTTATTTCGTGCAACTTGTTT 57.364 26.923 0.00 0.00 31.75 2.83
5551 6328 8.635877 TTTATGTTTATTTCGTGCAACTTGTT 57.364 26.923 0.00 0.00 31.75 2.83
5578 6355 9.790389 CGGCCACTTTATGTTTAATTATGTTTA 57.210 29.630 2.24 0.00 0.00 2.01
5579 6356 7.762159 CCGGCCACTTTATGTTTAATTATGTTT 59.238 33.333 2.24 0.00 0.00 2.83
5580 6357 7.093684 ACCGGCCACTTTATGTTTAATTATGTT 60.094 33.333 0.00 0.00 0.00 2.71
5583 6360 6.603997 TGACCGGCCACTTTATGTTTAATTAT 59.396 34.615 0.00 0.00 0.00 1.28
5584 6361 5.944599 TGACCGGCCACTTTATGTTTAATTA 59.055 36.000 0.00 0.00 0.00 1.40
5587 6364 3.752665 TGACCGGCCACTTTATGTTTAA 58.247 40.909 0.00 0.00 0.00 1.52
5588 6365 3.420300 TGACCGGCCACTTTATGTTTA 57.580 42.857 0.00 0.00 0.00 2.01
5590 6367 2.279935 TTGACCGGCCACTTTATGTT 57.720 45.000 0.00 0.00 0.00 2.71
5591 6368 1.883926 GTTTGACCGGCCACTTTATGT 59.116 47.619 0.00 0.00 0.00 2.29
5592 6369 1.135803 CGTTTGACCGGCCACTTTATG 60.136 52.381 0.00 0.00 0.00 1.90
5593 6370 1.161843 CGTTTGACCGGCCACTTTAT 58.838 50.000 0.00 0.00 0.00 1.40
5594 6371 1.508808 GCGTTTGACCGGCCACTTTA 61.509 55.000 0.00 0.00 0.00 1.85
5596 6373 3.284449 GCGTTTGACCGGCCACTT 61.284 61.111 0.00 0.00 0.00 3.16
5604 6381 3.551887 CTTTGGCCGGCGTTTGACC 62.552 63.158 22.54 4.79 0.00 4.02
5605 6382 2.050442 CTTTGGCCGGCGTTTGAC 60.050 61.111 22.54 5.65 0.00 3.18
5606 6383 2.517402 ACTTTGGCCGGCGTTTGA 60.517 55.556 22.54 3.25 0.00 2.69
5607 6384 2.050442 GACTTTGGCCGGCGTTTG 60.050 61.111 22.54 13.30 0.00 2.93
5608 6385 3.292159 GGACTTTGGCCGGCGTTT 61.292 61.111 22.54 1.74 0.00 3.60
5609 6386 4.572571 TGGACTTTGGCCGGCGTT 62.573 61.111 22.54 1.31 0.00 4.84
5612 6389 2.757980 TTAGGTGGACTTTGGCCGGC 62.758 60.000 21.18 21.18 0.00 6.13
5613 6390 0.250989 TTTAGGTGGACTTTGGCCGG 60.251 55.000 0.00 0.00 0.00 6.13
5614 6391 1.743394 GATTTAGGTGGACTTTGGCCG 59.257 52.381 0.00 0.00 0.00 6.13
5615 6392 3.087370 AGATTTAGGTGGACTTTGGCC 57.913 47.619 0.00 0.00 0.00 5.36
5616 6393 7.875327 TTATTAGATTTAGGTGGACTTTGGC 57.125 36.000 0.00 0.00 0.00 4.52
5617 6394 9.238368 TGTTTATTAGATTTAGGTGGACTTTGG 57.762 33.333 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.