Multiple sequence alignment - TraesCS4A01G357500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G357500 chr4A 100.000 3525 0 0 1 3525 630879088 630875564 0.000000e+00 6510.0
1 TraesCS4A01G357500 chr4A 94.880 1328 53 10 1611 2932 631501051 631502369 0.000000e+00 2061.0
2 TraesCS4A01G357500 chr4A 84.444 1350 127 37 2125 3450 630898305 630897015 0.000000e+00 1253.0
3 TraesCS4A01G357500 chr4A 82.327 1126 136 29 1511 2589 631476521 631477630 0.000000e+00 918.0
4 TraesCS4A01G357500 chr4A 79.779 1266 159 51 1514 2736 631494782 631495993 0.000000e+00 830.0
5 TraesCS4A01G357500 chr4A 89.873 632 41 12 862 1492 631475857 631476466 0.000000e+00 791.0
6 TraesCS4A01G357500 chr4A 81.511 887 85 41 976 1828 631507185 631508026 0.000000e+00 656.0
7 TraesCS4A01G357500 chr4A 89.216 510 31 13 985 1492 630899241 630898754 1.800000e-172 616.0
8 TraesCS4A01G357500 chr4A 90.130 385 28 3 1512 1892 630898693 630898315 3.160000e-135 492.0
9 TraesCS4A01G357500 chr4A 95.339 236 10 1 558 792 292923493 292923728 1.190000e-99 374.0
10 TraesCS4A01G357500 chr4A 91.880 234 10 2 3047 3280 631502373 631502597 5.680000e-83 318.0
11 TraesCS4A01G357500 chr4A 92.121 165 12 1 3361 3525 631502619 631502782 7.610000e-57 231.0
12 TraesCS4A01G357500 chr4A 76.957 447 72 20 3037 3461 631498431 631498868 3.540000e-55 226.0
13 TraesCS4A01G357500 chr4A 85.549 173 23 2 169 339 12674008 12674180 2.800000e-41 180.0
14 TraesCS4A01G357500 chr5B 91.540 2033 137 18 1503 3525 679672746 679674753 0.000000e+00 2769.0
15 TraesCS4A01G357500 chr5B 90.974 698 28 10 793 1486 679672017 679672683 0.000000e+00 907.0
16 TraesCS4A01G357500 chr5B 85.871 637 56 16 873 1492 679405435 679404816 0.000000e+00 647.0
17 TraesCS4A01G357500 chr5B 85.489 634 52 19 862 1492 679559949 679559353 2.990000e-175 625.0
18 TraesCS4A01G357500 chr5B 78.389 782 97 40 1510 2247 679404757 679404004 3.230000e-120 442.0
19 TraesCS4A01G357500 chr5B 87.251 251 30 2 84 333 679671753 679672002 5.760000e-73 285.0
20 TraesCS4A01G357500 chr5B 81.780 236 29 8 2607 2840 679403717 679403494 6.010000e-43 185.0
21 TraesCS4A01G357500 chr5B 79.221 231 28 7 2733 2963 679558116 679557906 3.670000e-30 143.0
22 TraesCS4A01G357500 chr5B 97.436 39 1 0 3456 3494 679674732 679674770 2.270000e-07 67.6
23 TraesCS4A01G357500 chrUn 85.816 1974 188 52 1503 3450 67362843 67360936 0.000000e+00 2010.0
24 TraesCS4A01G357500 chrUn 90.114 526 36 11 979 1498 67363409 67362894 0.000000e+00 669.0
25 TraesCS4A01G357500 chr5D 86.940 1294 107 28 2170 3450 538622736 538623980 0.000000e+00 1397.0
26 TraesCS4A01G357500 chr5D 93.227 812 36 10 2125 2932 538656425 538657221 0.000000e+00 1177.0
27 TraesCS4A01G357500 chr5D 83.791 1092 145 18 1511 2589 538441711 538440639 0.000000e+00 1007.0
28 TraesCS4A01G357500 chr5D 82.152 1115 121 31 1510 2584 538424683 538423607 0.000000e+00 885.0
29 TraesCS4A01G357500 chr5D 89.407 708 47 11 793 1492 538655289 538655976 0.000000e+00 867.0
30 TraesCS4A01G357500 chr5D 92.095 506 30 5 987 1492 538621558 538622053 0.000000e+00 704.0
31 TraesCS4A01G357500 chr5D 89.279 569 48 9 1510 2070 538622107 538622670 0.000000e+00 701.0
32 TraesCS4A01G357500 chr5D 91.529 484 33 5 3042 3525 538657222 538657697 0.000000e+00 660.0
33 TraesCS4A01G357500 chr5D 86.467 569 39 18 950 1492 538425296 538424740 1.090000e-164 590.0
34 TraesCS4A01G357500 chr5D 87.242 533 45 11 976 1492 538417296 538416771 1.410000e-163 586.0
35 TraesCS4A01G357500 chr5D 90.155 386 26 5 1512 1892 538656037 538656415 3.160000e-135 492.0
36 TraesCS4A01G357500 chr5D 91.562 320 26 1 6 324 538654791 538655110 1.160000e-119 440.0
37 TraesCS4A01G357500 chr5D 77.283 427 72 13 341 752 406830164 406830580 9.840000e-56 228.0
38 TraesCS4A01G357500 chr5D 79.598 348 45 9 2619 2963 538440642 538440318 3.540000e-55 226.0
39 TraesCS4A01G357500 chr5D 97.436 39 1 0 3456 3494 538657676 538657714 2.270000e-07 67.6
40 TraesCS4A01G357500 chr2A 90.105 475 25 5 339 793 525734590 525735062 6.510000e-167 597.0
41 TraesCS4A01G357500 chr2A 88.589 482 31 5 334 792 753247118 753247598 6.610000e-157 564.0
42 TraesCS4A01G357500 chr1A 89.286 476 31 5 338 794 458449804 458449330 2.360000e-161 579.0
43 TraesCS4A01G357500 chr5A 89.362 470 34 5 338 792 428156885 428156417 8.480000e-161 577.0
44 TraesCS4A01G357500 chr5A 89.451 474 25 8 338 792 412183505 412183972 3.050000e-160 575.0
45 TraesCS4A01G357500 chr7A 88.075 478 25 7 339 796 701635988 701636453 4.000000e-149 538.0
46 TraesCS4A01G357500 chr7A 87.554 466 32 11 339 792 538852937 538852486 1.880000e-142 516.0
47 TraesCS4A01G357500 chr7A 86.531 490 30 10 336 794 202736481 202735997 1.130000e-139 507.0
48 TraesCS4A01G357500 chr3A 83.579 475 29 16 338 794 643162914 643162471 1.970000e-107 399.0
49 TraesCS4A01G357500 chr7B 82.683 410 46 12 332 732 3329350 3328957 1.210000e-89 340.0
50 TraesCS4A01G357500 chr7D 77.163 416 67 19 388 792 548616009 548616407 2.130000e-52 217.0
51 TraesCS4A01G357500 chr4B 84.000 175 26 2 169 341 568349299 568349125 2.180000e-37 167.0
52 TraesCS4A01G357500 chr2B 95.946 74 3 0 720 793 677017751 677017678 1.720000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G357500 chr4A 630875564 630879088 3524 True 6510.000000 6510 100.000000 1 3525 1 chr4A.!!$R1 3524
1 TraesCS4A01G357500 chr4A 631475857 631477630 1773 False 854.500000 918 86.100000 862 2589 2 chr4A.!!$F4 1727
2 TraesCS4A01G357500 chr4A 630897015 630899241 2226 True 787.000000 1253 87.930000 985 3450 3 chr4A.!!$R2 2465
3 TraesCS4A01G357500 chr4A 631494782 631502782 8000 False 733.200000 2061 87.123400 1514 3525 5 chr4A.!!$F5 2011
4 TraesCS4A01G357500 chr4A 631507185 631508026 841 False 656.000000 656 81.511000 976 1828 1 chr4A.!!$F3 852
5 TraesCS4A01G357500 chr5B 679671753 679674770 3017 False 1007.150000 2769 91.800250 84 3525 4 chr5B.!!$F1 3441
6 TraesCS4A01G357500 chr5B 679403494 679405435 1941 True 424.666667 647 82.013333 873 2840 3 chr5B.!!$R1 1967
7 TraesCS4A01G357500 chr5B 679557906 679559949 2043 True 384.000000 625 82.355000 862 2963 2 chr5B.!!$R2 2101
8 TraesCS4A01G357500 chrUn 67360936 67363409 2473 True 1339.500000 2010 87.965000 979 3450 2 chrUn.!!$R1 2471
9 TraesCS4A01G357500 chr5D 538621558 538623980 2422 False 934.000000 1397 89.438000 987 3450 3 chr5D.!!$F2 2463
10 TraesCS4A01G357500 chr5D 538423607 538425296 1689 True 737.500000 885 84.309500 950 2584 2 chr5D.!!$R2 1634
11 TraesCS4A01G357500 chr5D 538654791 538657714 2923 False 617.266667 1177 92.219333 6 3525 6 chr5D.!!$F3 3519
12 TraesCS4A01G357500 chr5D 538440318 538441711 1393 True 616.500000 1007 81.694500 1511 2963 2 chr5D.!!$R3 1452
13 TraesCS4A01G357500 chr5D 538416771 538417296 525 True 586.000000 586 87.242000 976 1492 1 chr5D.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.108377 ACACACTCGTCACTGTGCAA 60.108 50.0 2.12 0.00 41.35 4.08 F
153 154 0.168788 GTATCGTCCAACGGTCGTGA 59.831 55.0 0.00 0.00 42.81 4.35 F
752 780 0.179018 AGGCACGATTAAGATGGGCC 60.179 55.0 9.09 9.09 40.18 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 8064 0.392863 CATCGGCAAGGTCATGGTCA 60.393 55.000 0.0 0.0 0.00 4.02 R
1823 8152 1.226184 CGGGCGTTTTTATCCGTGC 60.226 57.895 0.0 0.0 37.92 5.34 R
2553 9102 1.899814 ACAAAGTACCTGCTCCGATCA 59.100 47.619 0.0 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.436998 GGAGCGCCGCTACACACT 62.437 66.667 18.19 0.00 39.71 3.55
56 57 0.729478 CCGCTACACACTCGTCACTG 60.729 60.000 0.00 0.00 0.00 3.66
61 62 0.108377 ACACACTCGTCACTGTGCAA 60.108 50.000 2.12 0.00 41.35 4.08
63 64 0.810031 ACACTCGTCACTGTGCAACC 60.810 55.000 2.12 0.00 37.68 3.77
107 108 0.936600 CATCCGCGCATGTGTATGAA 59.063 50.000 8.75 0.00 36.36 2.57
116 117 3.684305 CGCATGTGTATGAAGAAGTGGAA 59.316 43.478 0.00 0.00 36.36 3.53
153 154 0.168788 GTATCGTCCAACGGTCGTGA 59.831 55.000 0.00 0.00 42.81 4.35
317 319 4.154737 TCAGAAAAGTCAATCGATGCCTTG 59.845 41.667 0.00 0.00 0.00 3.61
324 326 7.624360 AAGTCAATCGATGCCTTGTATTTTA 57.376 32.000 0.00 0.00 0.00 1.52
328 330 6.998074 TCAATCGATGCCTTGTATTTTAGGAT 59.002 34.615 0.00 0.00 33.13 3.24
333 335 5.708736 TGCCTTGTATTTTAGGATGGAGA 57.291 39.130 0.00 0.00 33.13 3.71
334 336 5.684704 TGCCTTGTATTTTAGGATGGAGAG 58.315 41.667 0.00 0.00 33.13 3.20
335 337 5.428457 TGCCTTGTATTTTAGGATGGAGAGA 59.572 40.000 0.00 0.00 33.13 3.10
336 338 5.994668 GCCTTGTATTTTAGGATGGAGAGAG 59.005 44.000 0.00 0.00 33.13 3.20
339 341 8.875168 CCTTGTATTTTAGGATGGAGAGAGTAT 58.125 37.037 0.00 0.00 33.13 2.12
342 344 9.026121 TGTATTTTAGGATGGAGAGAGTATAGC 57.974 37.037 0.00 0.00 0.00 2.97
343 345 9.250246 GTATTTTAGGATGGAGAGAGTATAGCT 57.750 37.037 0.00 0.00 0.00 3.32
344 346 7.531857 TTTTAGGATGGAGAGAGTATAGCTG 57.468 40.000 0.00 0.00 0.00 4.24
345 347 4.046286 AGGATGGAGAGAGTATAGCTGG 57.954 50.000 0.00 0.00 0.00 4.85
346 348 2.495669 GGATGGAGAGAGTATAGCTGGC 59.504 54.545 0.00 0.00 0.00 4.85
347 349 2.002505 TGGAGAGAGTATAGCTGGCC 57.997 55.000 0.00 0.00 0.00 5.36
348 350 1.217942 TGGAGAGAGTATAGCTGGCCA 59.782 52.381 4.71 4.71 0.00 5.36
349 351 2.320781 GGAGAGAGTATAGCTGGCCAA 58.679 52.381 7.01 0.00 0.00 4.52
350 352 2.700897 GGAGAGAGTATAGCTGGCCAAA 59.299 50.000 7.01 0.00 0.00 3.28
351 353 3.326297 GGAGAGAGTATAGCTGGCCAAAT 59.674 47.826 7.01 3.30 0.00 2.32
352 354 4.314121 GAGAGAGTATAGCTGGCCAAATG 58.686 47.826 7.01 0.00 0.00 2.32
353 355 3.072184 AGAGAGTATAGCTGGCCAAATGG 59.928 47.826 7.01 0.00 38.53 3.16
354 356 2.107204 AGAGTATAGCTGGCCAAATGGG 59.893 50.000 7.01 0.00 40.85 4.00
363 365 2.755469 CCAAATGGGCCGGGTCTG 60.755 66.667 2.18 0.00 0.00 3.51
364 366 2.755469 CAAATGGGCCGGGTCTGG 60.755 66.667 2.18 0.00 0.00 3.86
410 412 3.449227 CAGGCCCGACACGCTCTA 61.449 66.667 0.00 0.00 0.00 2.43
411 413 2.678934 AGGCCCGACACGCTCTAA 60.679 61.111 0.00 0.00 0.00 2.10
412 414 2.058595 AGGCCCGACACGCTCTAAT 61.059 57.895 0.00 0.00 0.00 1.73
413 415 1.591863 GGCCCGACACGCTCTAATC 60.592 63.158 0.00 0.00 0.00 1.75
414 416 1.944676 GCCCGACACGCTCTAATCG 60.945 63.158 0.00 0.00 0.00 3.34
416 418 4.303853 CGACACGCTCTAATCGGG 57.696 61.111 0.00 0.00 36.25 5.14
419 421 1.432251 ACACGCTCTAATCGGGTCG 59.568 57.895 0.00 0.00 39.70 4.79
420 422 1.310933 ACACGCTCTAATCGGGTCGT 61.311 55.000 0.00 0.00 39.70 4.34
421 423 0.866061 CACGCTCTAATCGGGTCGTG 60.866 60.000 0.00 0.00 40.65 4.35
422 424 1.944676 CGCTCTAATCGGGTCGTGC 60.945 63.158 0.00 0.00 0.00 5.34
423 425 1.591863 GCTCTAATCGGGTCGTGCC 60.592 63.158 0.00 0.00 0.00 5.01
424 426 1.813859 CTCTAATCGGGTCGTGCCA 59.186 57.895 1.70 0.00 39.65 4.92
425 427 0.249073 CTCTAATCGGGTCGTGCCAG 60.249 60.000 1.70 0.00 39.65 4.85
426 428 1.227263 CTAATCGGGTCGTGCCAGG 60.227 63.158 1.70 0.00 39.65 4.45
427 429 3.379865 TAATCGGGTCGTGCCAGGC 62.380 63.158 3.66 3.66 39.65 4.85
461 463 4.764771 GCCATGCCTGGGCCTGAA 62.765 66.667 16.42 0.00 45.87 3.02
462 464 2.441532 CCATGCCTGGGCCTGAAG 60.442 66.667 16.42 0.00 38.70 3.02
463 465 2.441532 CATGCCTGGGCCTGAAGG 60.442 66.667 12.58 8.09 38.70 3.46
496 498 2.358247 GGCACGACACGACCCATT 60.358 61.111 0.00 0.00 0.00 3.16
497 499 1.964373 GGCACGACACGACCCATTT 60.964 57.895 0.00 0.00 0.00 2.32
498 500 0.671163 GGCACGACACGACCCATTTA 60.671 55.000 0.00 0.00 0.00 1.40
499 501 1.365699 GCACGACACGACCCATTTAT 58.634 50.000 0.00 0.00 0.00 1.40
500 502 1.326548 GCACGACACGACCCATTTATC 59.673 52.381 0.00 0.00 0.00 1.75
501 503 2.888594 CACGACACGACCCATTTATCT 58.111 47.619 0.00 0.00 0.00 1.98
502 504 3.259064 CACGACACGACCCATTTATCTT 58.741 45.455 0.00 0.00 0.00 2.40
503 505 3.682858 CACGACACGACCCATTTATCTTT 59.317 43.478 0.00 0.00 0.00 2.52
504 506 4.153475 CACGACACGACCCATTTATCTTTT 59.847 41.667 0.00 0.00 0.00 2.27
505 507 4.758165 ACGACACGACCCATTTATCTTTTT 59.242 37.500 0.00 0.00 0.00 1.94
563 591 3.784573 CCCAACGGGCCAAAATCA 58.215 55.556 4.39 0.00 35.35 2.57
564 592 1.591183 CCCAACGGGCCAAAATCAG 59.409 57.895 4.39 0.00 35.35 2.90
565 593 1.079888 CCAACGGGCCAAAATCAGC 60.080 57.895 4.39 0.00 0.00 4.26
577 605 4.809673 CCAAAATCAGCCCAAGAAACTAC 58.190 43.478 0.00 0.00 0.00 2.73
578 606 4.321974 CCAAAATCAGCCCAAGAAACTACC 60.322 45.833 0.00 0.00 0.00 3.18
579 607 4.388577 AAATCAGCCCAAGAAACTACCT 57.611 40.909 0.00 0.00 0.00 3.08
580 608 5.514500 AAATCAGCCCAAGAAACTACCTA 57.486 39.130 0.00 0.00 0.00 3.08
581 609 4.762289 ATCAGCCCAAGAAACTACCTAG 57.238 45.455 0.00 0.00 0.00 3.02
582 610 2.236395 TCAGCCCAAGAAACTACCTAGC 59.764 50.000 0.00 0.00 0.00 3.42
584 612 2.237392 AGCCCAAGAAACTACCTAGCAG 59.763 50.000 0.00 0.00 0.00 4.24
585 613 2.681097 GCCCAAGAAACTACCTAGCAGG 60.681 54.545 1.16 1.16 42.49 4.85
586 614 2.633488 CCAAGAAACTACCTAGCAGGC 58.367 52.381 2.50 0.00 39.63 4.85
587 615 2.633488 CAAGAAACTACCTAGCAGGCC 58.367 52.381 0.00 0.00 39.63 5.19
589 617 2.482494 AGAAACTACCTAGCAGGCCAT 58.518 47.619 5.01 0.00 39.63 4.40
591 619 1.879575 AACTACCTAGCAGGCCATCA 58.120 50.000 5.01 0.00 39.63 3.07
592 620 1.418334 ACTACCTAGCAGGCCATCAG 58.582 55.000 5.01 0.00 39.63 2.90
593 621 0.683973 CTACCTAGCAGGCCATCAGG 59.316 60.000 5.01 8.41 39.63 3.86
701 729 4.063967 CACAGCACGGCCCGACTA 62.064 66.667 11.71 0.00 0.00 2.59
702 730 3.307906 ACAGCACGGCCCGACTAA 61.308 61.111 11.71 0.00 0.00 2.24
703 731 2.186903 CAGCACGGCCCGACTAAT 59.813 61.111 11.71 0.00 0.00 1.73
704 732 1.324740 ACAGCACGGCCCGACTAATA 61.325 55.000 11.71 0.00 0.00 0.98
705 733 0.179094 CAGCACGGCCCGACTAATAA 60.179 55.000 11.71 0.00 0.00 1.40
706 734 0.756903 AGCACGGCCCGACTAATAAT 59.243 50.000 11.71 0.00 0.00 1.28
707 735 1.145803 GCACGGCCCGACTAATAATC 58.854 55.000 11.71 0.00 0.00 1.75
708 736 1.415374 CACGGCCCGACTAATAATCG 58.585 55.000 11.71 0.00 39.33 3.34
709 737 1.035139 ACGGCCCGACTAATAATCGT 58.965 50.000 11.71 0.00 37.90 3.73
710 738 1.269413 ACGGCCCGACTAATAATCGTG 60.269 52.381 11.71 0.00 37.90 4.35
711 739 1.145803 GGCCCGACTAATAATCGTGC 58.854 55.000 0.00 0.00 41.46 5.34
712 740 1.145803 GCCCGACTAATAATCGTGCC 58.854 55.000 0.00 0.00 37.04 5.01
713 741 1.539496 GCCCGACTAATAATCGTGCCA 60.539 52.381 0.00 0.00 37.04 4.92
714 742 2.870435 GCCCGACTAATAATCGTGCCAT 60.870 50.000 0.00 0.00 37.04 4.40
715 743 2.736721 CCCGACTAATAATCGTGCCATG 59.263 50.000 0.00 0.00 37.90 3.66
716 744 2.736721 CCGACTAATAATCGTGCCATGG 59.263 50.000 7.63 7.63 37.90 3.66
717 745 2.157668 CGACTAATAATCGTGCCATGGC 59.842 50.000 30.54 30.54 42.35 4.40
748 776 1.667236 TGCCAGGCACGATTAAGATG 58.333 50.000 11.22 0.00 31.71 2.90
749 777 0.947244 GCCAGGCACGATTAAGATGG 59.053 55.000 6.55 0.00 0.00 3.51
750 778 1.597742 CCAGGCACGATTAAGATGGG 58.402 55.000 0.00 0.00 0.00 4.00
751 779 0.947244 CAGGCACGATTAAGATGGGC 59.053 55.000 0.00 0.00 0.00 5.36
752 780 0.179018 AGGCACGATTAAGATGGGCC 60.179 55.000 9.09 9.09 40.18 5.80
753 781 1.507141 GGCACGATTAAGATGGGCCG 61.507 60.000 0.00 0.00 0.00 6.13
754 782 0.814010 GCACGATTAAGATGGGCCGT 60.814 55.000 0.00 0.00 0.00 5.68
755 783 0.937304 CACGATTAAGATGGGCCGTG 59.063 55.000 1.02 0.00 40.70 4.94
756 784 0.814010 ACGATTAAGATGGGCCGTGC 60.814 55.000 1.02 0.00 0.00 5.34
797 825 1.412710 CGTTTGGCCAGCTATAGGAGA 59.587 52.381 5.11 0.00 0.00 3.71
853 881 0.232303 GTCGCACGGTCAACAAGAAG 59.768 55.000 0.00 0.00 0.00 2.85
854 882 0.179094 TCGCACGGTCAACAAGAAGT 60.179 50.000 0.00 0.00 0.00 3.01
855 883 0.232303 CGCACGGTCAACAAGAAGTC 59.768 55.000 0.00 0.00 0.00 3.01
856 884 1.295792 GCACGGTCAACAAGAAGTCA 58.704 50.000 0.00 0.00 0.00 3.41
857 885 1.668751 GCACGGTCAACAAGAAGTCAA 59.331 47.619 0.00 0.00 0.00 3.18
858 886 2.286418 GCACGGTCAACAAGAAGTCAAG 60.286 50.000 0.00 0.00 0.00 3.02
859 887 3.194861 CACGGTCAACAAGAAGTCAAGA 58.805 45.455 0.00 0.00 0.00 3.02
860 888 3.621268 CACGGTCAACAAGAAGTCAAGAA 59.379 43.478 0.00 0.00 0.00 2.52
946 986 2.855209 ACAGAGCAAGAGCAGACAAT 57.145 45.000 0.00 0.00 45.49 2.71
1340 1416 3.141488 CTACCTCGAGGGCGCACT 61.141 66.667 34.04 14.78 40.27 4.40
1341 1417 2.678934 TACCTCGAGGGCGCACTT 60.679 61.111 34.04 14.70 40.27 3.16
1397 1479 3.624831 CTTCGAAAACGCCGACCGC 62.625 63.158 0.00 0.00 41.76 5.68
1492 1589 3.338250 TCAGGCCCATGTCCCACC 61.338 66.667 0.00 0.00 0.00 4.61
1498 1595 2.516930 CCATGTCCCACCGCATCC 60.517 66.667 0.00 0.00 0.00 3.51
1499 1596 2.591753 CATGTCCCACCGCATCCT 59.408 61.111 0.00 0.00 0.00 3.24
1500 1597 1.820906 CATGTCCCACCGCATCCTG 60.821 63.158 0.00 0.00 0.00 3.86
1735 8064 1.598130 GTGGAGACGGTTTGCTGCT 60.598 57.895 0.00 0.00 0.00 4.24
1823 8152 4.088056 AGATTCAGCATCTCCTCCATTG 57.912 45.455 0.00 0.00 37.79 2.82
1987 8331 2.105649 TGCTTGGTGGTGTCATACTCAA 59.894 45.455 0.00 0.00 0.00 3.02
2305 8835 3.852578 TCTGAAAGGGCCTCTAGGAATTT 59.147 43.478 6.46 0.00 37.39 1.82
2306 8836 4.292306 TCTGAAAGGGCCTCTAGGAATTTT 59.708 41.667 6.46 0.00 37.39 1.82
2325 8859 9.481340 GGAATTTTATTTCATTCATAGGCCTTC 57.519 33.333 12.58 0.00 31.91 3.46
2335 8869 3.889815 TCATAGGCCTTCAATTGTCCAG 58.110 45.455 12.58 0.57 0.00 3.86
2553 9102 5.528043 TGTGTGCTTCCAATACAATGTTT 57.472 34.783 0.00 0.00 0.00 2.83
2585 9138 7.228590 AGCAGGTACTTTGTTCTTACCATTAA 58.771 34.615 0.00 0.00 38.21 1.40
2589 9142 9.582648 AGGTACTTTGTTCTTACCATTAATTGT 57.417 29.630 0.00 0.00 38.21 2.71
2594 9147 9.981114 CTTTGTTCTTACCATTAATTGTTTCCT 57.019 29.630 0.00 0.00 0.00 3.36
2690 9257 6.684613 GCTGAGGCATTGATTTCATAATTGGT 60.685 38.462 0.00 0.00 38.54 3.67
2702 9269 6.500684 TTCATAATTGGTCAAGCTCAGTTC 57.499 37.500 0.00 0.00 0.00 3.01
2706 9273 1.372997 GGTCAAGCTCAGTTCGCGA 60.373 57.895 3.71 3.71 0.00 5.87
2840 9415 4.878397 CCTATTGGTTTGAGATTTCGAGCT 59.122 41.667 0.00 0.00 0.00 4.09
2932 9508 6.480651 TGCAGTTTATGTACGAACTTTGAGAA 59.519 34.615 6.41 0.00 34.04 2.87
2965 9541 1.033574 CCAAACGCCCAAACTAACCA 58.966 50.000 0.00 0.00 0.00 3.67
2977 9553 6.534793 GCCCAAACTAACCAATTGACATATTG 59.465 38.462 7.12 5.15 35.70 1.90
2986 9564 0.307453 TTGACATATTGGATGCGCGC 59.693 50.000 27.26 27.26 0.00 6.86
3055 9633 1.829222 GGTTGTCTTAGACCCGATGGA 59.171 52.381 10.10 0.00 34.81 3.41
3065 9643 0.251564 ACCCGATGGACCATGCAAAA 60.252 50.000 12.99 0.00 34.81 2.44
3221 9800 3.142174 GTTGCAGTTTGTAGGAGAAGCT 58.858 45.455 0.00 0.00 0.00 3.74
3242 9826 0.391661 GCTCTCCGCTGATGTTGGAA 60.392 55.000 0.00 0.00 35.14 3.53
3280 9869 0.105964 TGCTGGTTGCGTGTAGAGTT 59.894 50.000 0.00 0.00 46.63 3.01
3284 9873 0.941542 GGTTGCGTGTAGAGTTGCAA 59.058 50.000 0.00 0.00 44.34 4.08
3300 9889 0.106819 GCAATCTCAGACCCTGCCAT 60.107 55.000 0.00 0.00 0.00 4.40
3330 9919 7.807977 CAGACCTGCATTATAACATAGGTTT 57.192 36.000 14.23 8.57 38.57 3.27
3334 9923 9.502091 GACCTGCATTATAACATAGGTTTGATA 57.498 33.333 14.23 0.00 38.57 2.15
3384 9973 5.067283 GCGGACCTTGTATTGGTTGAATTAT 59.933 40.000 0.00 0.00 38.03 1.28
3490 10079 3.653344 TGATCTTGAGTTCTTGGACACG 58.347 45.455 0.00 0.00 0.00 4.49
3504 10098 1.382695 ACACGGACCCCCTGGATAG 60.383 63.158 0.00 0.00 34.81 2.08
3520 10114 5.279406 CCTGGATAGTGATCATCCTCTTGAC 60.279 48.000 13.67 0.00 42.21 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.104356 TGGAGTACCCACCTTCCCAA 60.104 55.000 0.00 0.00 40.82 4.12
1 2 1.554992 TGGAGTACCCACCTTCCCA 59.445 57.895 0.00 0.00 40.82 4.37
2 3 4.573261 TGGAGTACCCACCTTCCC 57.427 61.111 0.00 0.00 40.82 3.97
35 36 2.874780 GACGAGTGTGTAGCGGCG 60.875 66.667 0.51 0.51 0.00 6.46
38 39 0.040336 ACAGTGACGAGTGTGTAGCG 60.040 55.000 0.00 0.00 34.23 4.26
48 49 0.249699 AATCGGTTGCACAGTGACGA 60.250 50.000 4.15 8.51 34.70 4.20
61 62 0.321210 TGGATCGTGCAACAATCGGT 60.321 50.000 0.00 0.00 35.74 4.69
63 64 1.061131 GACTGGATCGTGCAACAATCG 59.939 52.381 0.00 0.00 35.74 3.34
90 91 0.174617 TCTTCATACACATGCGCGGA 59.825 50.000 8.83 5.00 31.73 5.54
116 117 5.128827 ACGATACTTTATCCTGTGGATGTGT 59.871 40.000 9.17 7.48 43.06 3.72
153 154 5.670792 TTAGTCCACGATGATACTTGGTT 57.329 39.130 0.00 0.00 32.21 3.67
164 165 7.041372 GCCATTTATACATGTTTAGTCCACGAT 60.041 37.037 2.30 0.00 0.00 3.73
267 269 6.223138 TCGTCACACAATTTTGACTATGAC 57.777 37.500 0.00 1.36 40.08 3.06
294 296 3.942829 AGGCATCGATTGACTTTTCTGA 58.057 40.909 0.00 0.00 42.98 3.27
317 319 9.250246 AGCTATACTCTCTCCATCCTAAAATAC 57.750 37.037 0.00 0.00 0.00 1.89
324 326 3.817567 GCCAGCTATACTCTCTCCATCCT 60.818 52.174 0.00 0.00 0.00 3.24
328 330 1.217942 TGGCCAGCTATACTCTCTCCA 59.782 52.381 0.00 0.00 0.00 3.86
333 335 2.107204 CCCATTTGGCCAGCTATACTCT 59.893 50.000 5.11 0.00 0.00 3.24
334 336 2.508526 CCCATTTGGCCAGCTATACTC 58.491 52.381 5.11 0.00 0.00 2.59
335 337 2.664402 CCCATTTGGCCAGCTATACT 57.336 50.000 5.11 0.00 0.00 2.12
346 348 2.755469 CAGACCCGGCCCATTTGG 60.755 66.667 0.00 0.00 37.09 3.28
347 349 2.755469 CCAGACCCGGCCCATTTG 60.755 66.667 0.00 0.00 0.00 2.32
393 395 2.298158 ATTAGAGCGTGTCGGGCCTG 62.298 60.000 4.71 4.71 0.00 4.85
394 396 2.017559 GATTAGAGCGTGTCGGGCCT 62.018 60.000 0.84 0.00 0.00 5.19
395 397 1.591863 GATTAGAGCGTGTCGGGCC 60.592 63.158 0.00 0.00 0.00 5.80
396 398 1.944676 CGATTAGAGCGTGTCGGGC 60.945 63.158 0.00 0.00 0.00 6.13
397 399 4.303853 CGATTAGAGCGTGTCGGG 57.696 61.111 0.00 0.00 0.00 5.14
398 400 4.303853 CCGATTAGAGCGTGTCGG 57.696 61.111 0.00 0.00 46.26 4.79
399 401 0.591741 GACCCGATTAGAGCGTGTCG 60.592 60.000 0.00 0.00 0.00 4.35
400 402 0.591741 CGACCCGATTAGAGCGTGTC 60.592 60.000 0.00 0.00 33.75 3.67
401 403 1.310933 ACGACCCGATTAGAGCGTGT 61.311 55.000 0.00 0.00 0.00 4.49
402 404 0.866061 CACGACCCGATTAGAGCGTG 60.866 60.000 0.00 0.00 42.17 5.34
403 405 1.432251 CACGACCCGATTAGAGCGT 59.568 57.895 0.00 0.00 0.00 5.07
404 406 1.944676 GCACGACCCGATTAGAGCG 60.945 63.158 0.00 0.00 0.00 5.03
405 407 1.591863 GGCACGACCCGATTAGAGC 60.592 63.158 0.00 0.00 0.00 4.09
406 408 0.249073 CTGGCACGACCCGATTAGAG 60.249 60.000 0.00 0.00 37.83 2.43
407 409 1.672854 CCTGGCACGACCCGATTAGA 61.673 60.000 0.00 0.00 37.83 2.10
408 410 1.227263 CCTGGCACGACCCGATTAG 60.227 63.158 0.00 0.00 37.83 1.73
409 411 2.897207 CCTGGCACGACCCGATTA 59.103 61.111 0.00 0.00 37.83 1.75
410 412 4.778143 GCCTGGCACGACCCGATT 62.778 66.667 15.17 0.00 37.83 3.34
478 480 4.735132 ATGGGTCGTGTCGTGCCG 62.735 66.667 0.00 0.00 0.00 5.69
479 481 0.671163 TAAATGGGTCGTGTCGTGCC 60.671 55.000 0.00 0.00 0.00 5.01
480 482 1.326548 GATAAATGGGTCGTGTCGTGC 59.673 52.381 0.00 0.00 0.00 5.34
481 483 2.888594 AGATAAATGGGTCGTGTCGTG 58.111 47.619 0.00 0.00 0.00 4.35
482 484 3.604875 AAGATAAATGGGTCGTGTCGT 57.395 42.857 0.00 0.00 0.00 4.34
483 485 4.939509 AAAAGATAAATGGGTCGTGTCG 57.060 40.909 0.00 0.00 0.00 4.35
547 575 1.079888 GCTGATTTTGGCCCGTTGG 60.080 57.895 0.00 0.00 0.00 3.77
548 576 1.079888 GGCTGATTTTGGCCCGTTG 60.080 57.895 0.00 0.00 42.30 4.10
549 577 3.376546 GGCTGATTTTGGCCCGTT 58.623 55.556 0.00 0.00 42.30 4.44
554 582 2.037641 AGTTTCTTGGGCTGATTTTGGC 59.962 45.455 0.00 0.00 0.00 4.52
555 583 4.321974 GGTAGTTTCTTGGGCTGATTTTGG 60.322 45.833 0.00 0.00 0.00 3.28
556 584 4.524328 AGGTAGTTTCTTGGGCTGATTTTG 59.476 41.667 0.00 0.00 0.00 2.44
557 585 4.740902 AGGTAGTTTCTTGGGCTGATTTT 58.259 39.130 0.00 0.00 0.00 1.82
558 586 4.388577 AGGTAGTTTCTTGGGCTGATTT 57.611 40.909 0.00 0.00 0.00 2.17
559 587 4.626529 GCTAGGTAGTTTCTTGGGCTGATT 60.627 45.833 0.00 0.00 0.00 2.57
560 588 3.118223 GCTAGGTAGTTTCTTGGGCTGAT 60.118 47.826 0.00 0.00 0.00 2.90
561 589 2.236395 GCTAGGTAGTTTCTTGGGCTGA 59.764 50.000 0.00 0.00 0.00 4.26
562 590 2.027192 TGCTAGGTAGTTTCTTGGGCTG 60.027 50.000 0.00 0.00 0.00 4.85
563 591 2.237392 CTGCTAGGTAGTTTCTTGGGCT 59.763 50.000 0.00 0.00 0.00 5.19
564 592 2.633488 CTGCTAGGTAGTTTCTTGGGC 58.367 52.381 0.00 0.00 0.00 5.36
565 593 2.681097 GCCTGCTAGGTAGTTTCTTGGG 60.681 54.545 4.45 0.00 37.80 4.12
566 594 2.633488 GCCTGCTAGGTAGTTTCTTGG 58.367 52.381 4.45 0.00 37.80 3.61
567 595 2.027192 TGGCCTGCTAGGTAGTTTCTTG 60.027 50.000 3.32 0.00 37.80 3.02
684 712 2.852495 ATTAGTCGGGCCGTGCTGTG 62.852 60.000 27.32 0.00 0.00 3.66
685 713 1.324740 TATTAGTCGGGCCGTGCTGT 61.325 55.000 27.32 18.32 0.00 4.40
686 714 0.179094 TTATTAGTCGGGCCGTGCTG 60.179 55.000 27.32 0.00 0.00 4.41
687 715 0.756903 ATTATTAGTCGGGCCGTGCT 59.243 50.000 27.32 25.06 0.00 4.40
688 716 1.145803 GATTATTAGTCGGGCCGTGC 58.854 55.000 27.32 19.49 0.00 5.34
689 717 1.269413 ACGATTATTAGTCGGGCCGTG 60.269 52.381 27.32 0.00 43.06 4.94
690 718 1.035139 ACGATTATTAGTCGGGCCGT 58.965 50.000 27.32 10.46 43.06 5.68
691 719 1.415374 CACGATTATTAGTCGGGCCG 58.585 55.000 22.51 22.51 43.06 6.13
694 722 2.519377 TGGCACGATTATTAGTCGGG 57.481 50.000 12.41 9.61 44.93 5.14
695 723 2.736721 CCATGGCACGATTATTAGTCGG 59.263 50.000 12.41 3.88 43.06 4.79
696 724 2.157668 GCCATGGCACGATTATTAGTCG 59.842 50.000 32.08 7.01 44.26 4.18
697 725 3.813529 GCCATGGCACGATTATTAGTC 57.186 47.619 32.08 0.00 41.49 2.59
729 757 1.667236 CATCTTAATCGTGCCTGGCA 58.333 50.000 19.30 19.30 35.60 4.92
730 758 0.947244 CCATCTTAATCGTGCCTGGC 59.053 55.000 12.87 12.87 0.00 4.85
731 759 1.597742 CCCATCTTAATCGTGCCTGG 58.402 55.000 0.00 0.00 0.00 4.45
732 760 0.947244 GCCCATCTTAATCGTGCCTG 59.053 55.000 0.00 0.00 0.00 4.85
733 761 0.179018 GGCCCATCTTAATCGTGCCT 60.179 55.000 0.00 0.00 34.61 4.75
734 762 1.507141 CGGCCCATCTTAATCGTGCC 61.507 60.000 0.00 0.00 0.00 5.01
735 763 0.814010 ACGGCCCATCTTAATCGTGC 60.814 55.000 0.00 0.00 0.00 5.34
736 764 0.937304 CACGGCCCATCTTAATCGTG 59.063 55.000 0.00 0.00 41.09 4.35
737 765 0.814010 GCACGGCCCATCTTAATCGT 60.814 55.000 0.00 0.00 0.00 3.73
738 766 1.507141 GGCACGGCCCATCTTAATCG 61.507 60.000 0.00 0.00 44.06 3.34
739 767 2.331265 GGCACGGCCCATCTTAATC 58.669 57.895 0.00 0.00 44.06 1.75
740 768 4.579127 GGCACGGCCCATCTTAAT 57.421 55.556 0.00 0.00 44.06 1.40
775 803 0.535102 CCTATAGCTGGCCAAACGGG 60.535 60.000 7.01 0.50 40.85 5.28
776 804 0.468226 TCCTATAGCTGGCCAAACGG 59.532 55.000 7.01 1.68 0.00 4.44
777 805 1.412710 TCTCCTATAGCTGGCCAAACG 59.587 52.381 7.01 0.00 0.00 3.60
778 806 2.700897 TCTCTCCTATAGCTGGCCAAAC 59.299 50.000 7.01 1.16 0.00 2.93
779 807 2.968574 CTCTCTCCTATAGCTGGCCAAA 59.031 50.000 7.01 0.00 0.00 3.28
780 808 2.091055 ACTCTCTCCTATAGCTGGCCAA 60.091 50.000 7.01 0.00 0.00 4.52
781 809 1.501170 ACTCTCTCCTATAGCTGGCCA 59.499 52.381 4.71 4.71 0.00 5.36
782 810 2.302587 ACTCTCTCCTATAGCTGGCC 57.697 55.000 0.00 0.00 0.00 5.36
783 811 4.028993 ACTACTCTCTCCTATAGCTGGC 57.971 50.000 0.00 0.00 0.00 4.85
784 812 8.519526 CAAATTACTACTCTCTCCTATAGCTGG 58.480 40.741 0.00 0.00 0.00 4.85
785 813 8.519526 CCAAATTACTACTCTCTCCTATAGCTG 58.480 40.741 0.00 0.00 0.00 4.24
786 814 8.449625 TCCAAATTACTACTCTCTCCTATAGCT 58.550 37.037 0.00 0.00 0.00 3.32
787 815 8.638629 TCCAAATTACTACTCTCTCCTATAGC 57.361 38.462 0.00 0.00 0.00 2.97
788 816 9.238368 CCTCCAAATTACTACTCTCTCCTATAG 57.762 40.741 0.00 0.00 0.00 1.31
789 817 8.171400 CCCTCCAAATTACTACTCTCTCCTATA 58.829 40.741 0.00 0.00 0.00 1.31
790 818 7.013834 CCCTCCAAATTACTACTCTCTCCTAT 58.986 42.308 0.00 0.00 0.00 2.57
791 819 6.374588 CCCTCCAAATTACTACTCTCTCCTA 58.625 44.000 0.00 0.00 0.00 2.94
797 825 7.578458 TTTTACCCCTCCAAATTACTACTCT 57.422 36.000 0.00 0.00 0.00 3.24
853 881 3.375922 CCCTAGACTCGTCTCTTCTTGAC 59.624 52.174 2.32 0.00 40.93 3.18
854 882 3.611970 CCCTAGACTCGTCTCTTCTTGA 58.388 50.000 2.32 0.00 40.93 3.02
855 883 2.098443 GCCCTAGACTCGTCTCTTCTTG 59.902 54.545 2.32 0.00 40.93 3.02
856 884 2.371306 GCCCTAGACTCGTCTCTTCTT 58.629 52.381 2.32 0.00 40.93 2.52
857 885 1.409101 GGCCCTAGACTCGTCTCTTCT 60.409 57.143 2.32 0.00 40.93 2.85
858 886 1.026584 GGCCCTAGACTCGTCTCTTC 58.973 60.000 2.32 0.00 40.93 2.87
859 887 0.331954 TGGCCCTAGACTCGTCTCTT 59.668 55.000 0.00 0.00 40.93 2.85
860 888 0.394625 GTGGCCCTAGACTCGTCTCT 60.395 60.000 0.00 0.00 40.93 3.10
946 986 1.962306 GTGTTTTCCAGCCGCCGTA 60.962 57.895 0.00 0.00 0.00 4.02
1340 1416 2.126618 CACGGTAGTCGCGCTGAA 60.127 61.111 5.56 0.00 43.89 3.02
1341 1417 4.111016 CCACGGTAGTCGCGCTGA 62.111 66.667 5.56 1.08 43.89 4.26
1498 1595 2.219458 GCCTCACATCACATCCATCAG 58.781 52.381 0.00 0.00 0.00 2.90
1499 1596 1.560611 TGCCTCACATCACATCCATCA 59.439 47.619 0.00 0.00 0.00 3.07
1500 1597 2.336945 TGCCTCACATCACATCCATC 57.663 50.000 0.00 0.00 0.00 3.51
1735 8064 0.392863 CATCGGCAAGGTCATGGTCA 60.393 55.000 0.00 0.00 0.00 4.02
1823 8152 1.226184 CGGGCGTTTTTATCCGTGC 60.226 57.895 0.00 0.00 37.92 5.34
1987 8331 5.826586 TGTTTCAACAGACAAACGCATTAT 58.173 33.333 0.00 0.00 35.59 1.28
2305 8835 8.980596 ACAATTGAAGGCCTATGAATGAAATAA 58.019 29.630 13.59 0.00 0.00 1.40
2306 8836 8.537728 ACAATTGAAGGCCTATGAATGAAATA 57.462 30.769 13.59 0.00 0.00 1.40
2553 9102 1.899814 ACAAAGTACCTGCTCCGATCA 59.100 47.619 0.00 0.00 0.00 2.92
2592 9145 9.338622 ACGATGGAAAGAAATTTAACCTATAGG 57.661 33.333 17.73 17.73 42.17 2.57
2595 9148 9.855021 CAAACGATGGAAAGAAATTTAACCTAT 57.145 29.630 0.00 0.00 0.00 2.57
2690 9257 2.647529 TATTCGCGAACTGAGCTTGA 57.352 45.000 26.00 0.00 0.00 3.02
2722 9296 3.316308 CCATAACTCATAAGCAAGTGGGC 59.684 47.826 0.00 0.00 0.00 5.36
2840 9415 3.088532 AGGTTGCAGTTTCACTTGTCAA 58.911 40.909 0.00 0.00 0.00 3.18
2932 9508 2.086869 CGTTTGGCCACTGATGAGAAT 58.913 47.619 3.88 0.00 0.00 2.40
2965 9541 2.605338 GCGCGCATCCAATATGTCAATT 60.605 45.455 29.10 0.00 0.00 2.32
2977 9553 0.868602 TACTTTCTACGCGCGCATCC 60.869 55.000 32.58 0.72 0.00 3.51
2986 9564 3.120442 CCCGGCAGTTTTTACTTTCTACG 60.120 47.826 0.00 0.00 0.00 3.51
3055 9633 1.342174 CAGGCAGAACTTTTGCATGGT 59.658 47.619 10.30 0.00 46.30 3.55
3065 9643 0.036022 GAGGCAAGACAGGCAGAACT 59.964 55.000 0.00 0.00 36.37 3.01
3141 9719 7.390996 GGATAGATCAGAACCGTATACAAGAGA 59.609 40.741 3.32 0.00 0.00 3.10
3196 9775 5.499139 TTCTCCTACAAACTGCAACAAAG 57.501 39.130 0.00 0.00 0.00 2.77
3280 9869 1.300963 GGCAGGGTCTGAGATTGCA 59.699 57.895 15.12 0.00 36.53 4.08
3284 9873 1.293062 ACAATGGCAGGGTCTGAGAT 58.707 50.000 0.00 0.00 32.44 2.75
3285 9874 1.833630 CTACAATGGCAGGGTCTGAGA 59.166 52.381 0.00 0.00 32.44 3.27
3330 9919 3.637229 GCTGTTACCTGCTACTCCTATCA 59.363 47.826 0.00 0.00 33.16 2.15
3334 9923 0.818296 CGCTGTTACCTGCTACTCCT 59.182 55.000 0.00 0.00 33.71 3.69
3384 9973 7.360438 CGAGATCATCGTCAGACTACAATCATA 60.360 40.741 0.00 0.00 46.62 2.15
3490 10079 1.353091 GATCACTATCCAGGGGGTCC 58.647 60.000 0.00 0.00 34.93 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.