Multiple sequence alignment - TraesCS4A01G356600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G356600 chr4A 100.000 2915 0 0 1 2915 629934770 629937684 0.000000e+00 5384.0
1 TraesCS4A01G356600 chr4A 98.881 268 3 0 1 268 629927732 629927999 2.030000e-131 479.0
2 TraesCS4A01G356600 chr4A 97.464 276 7 0 1 276 10169308 10169033 3.400000e-129 472.0
3 TraesCS4A01G356600 chr4A 96.364 275 9 1 680 953 629935368 629935642 4.430000e-123 451.0
4 TraesCS4A01G356600 chr4A 96.364 275 9 1 599 873 629935449 629935722 4.430000e-123 451.0
5 TraesCS4A01G356600 chr4A 87.654 81 9 1 599 679 117699885 117699964 3.090000e-15 93.5
6 TraesCS4A01G356600 chr5D 95.542 1615 67 4 760 2371 538687030 538688642 0.000000e+00 2579.0
7 TraesCS4A01G356600 chr5D 96.774 527 16 1 267 793 538686698 538687223 0.000000e+00 878.0
8 TraesCS4A01G356600 chr5D 80.806 422 44 19 1983 2371 375283729 375283312 2.200000e-76 296.0
9 TraesCS4A01G356600 chr4D 95.724 1333 52 4 1039 2368 145379903 145378573 0.000000e+00 2141.0
10 TraesCS4A01G356600 chr4D 87.816 1305 135 15 791 2080 348041285 348039990 0.000000e+00 1507.0
11 TraesCS4A01G356600 chr1A 92.572 1427 70 20 945 2368 80283707 80282314 0.000000e+00 2015.0
12 TraesCS4A01G356600 chr1A 95.170 559 26 1 267 825 80284257 80283700 0.000000e+00 881.0
13 TraesCS4A01G356600 chr1A 90.097 414 37 3 1962 2372 467752960 467753372 4.280000e-148 534.0
14 TraesCS4A01G356600 chr3D 88.683 1617 147 20 775 2368 339817076 339818679 0.000000e+00 1940.0
15 TraesCS4A01G356600 chr3D 89.414 529 33 14 267 792 339816747 339817255 0.000000e+00 645.0
16 TraesCS4A01G356600 chr2B 92.663 1322 93 4 759 2079 54562881 54561563 0.000000e+00 1901.0
17 TraesCS4A01G356600 chr2B 92.135 534 36 2 267 800 54563207 54562680 0.000000e+00 749.0
18 TraesCS4A01G356600 chr2B 98.162 272 4 1 1 272 404844089 404843819 9.450000e-130 473.0
19 TraesCS4A01G356600 chr2B 97.133 279 7 1 1 278 712916743 712916465 1.220000e-128 470.0
20 TraesCS4A01G356600 chr1D 95.398 1130 48 3 1240 2367 80683840 80684967 0.000000e+00 1796.0
21 TraesCS4A01G356600 chr1D 95.446 527 22 2 267 793 80674237 80674761 0.000000e+00 839.0
22 TraesCS4A01G356600 chr7D 89.091 1375 134 10 706 2079 271454794 271456153 0.000000e+00 1694.0
23 TraesCS4A01G356600 chr7D 94.964 278 12 2 2091 2368 78508520 78508795 4.460000e-118 435.0
24 TraesCS4A01G356600 chr3B 87.457 1451 125 35 948 2371 592330400 592328980 0.000000e+00 1618.0
25 TraesCS4A01G356600 chr3B 98.141 269 5 0 1 269 283167814 283168082 1.220000e-128 470.0
26 TraesCS4A01G356600 chr6A 86.704 1414 145 21 695 2076 571574603 571576005 0.000000e+00 1530.0
27 TraesCS4A01G356600 chr7A 99.341 607 4 0 267 873 62735754 62736360 0.000000e+00 1099.0
28 TraesCS4A01G356600 chr7A 98.519 270 4 0 1 270 617940582 617940851 7.310000e-131 477.0
29 TraesCS4A01G356600 chr7A 88.889 279 23 7 2096 2371 211154279 211154552 1.290000e-88 337.0
30 TraesCS4A01G356600 chr5A 94.563 607 31 2 267 873 78448978 78449582 0.000000e+00 937.0
31 TraesCS4A01G356600 chr5A 93.204 515 34 1 680 1194 78449310 78449823 0.000000e+00 756.0
32 TraesCS4A01G356600 chr5A 98.513 269 4 0 1 269 431032454 431032186 2.630000e-130 475.0
33 TraesCS4A01G356600 chr5B 91.969 523 33 3 2395 2915 680319399 680318884 0.000000e+00 725.0
34 TraesCS4A01G356600 chr6B 95.536 336 15 0 267 602 672729324 672729659 3.310000e-149 538.0
35 TraesCS4A01G356600 chr2D 86.414 449 58 3 267 714 641119731 641119285 3.380000e-134 488.0
36 TraesCS4A01G356600 chr7B 98.141 269 5 0 1 269 604464193 604464461 1.220000e-128 470.0
37 TraesCS4A01G356600 chr1B 96.140 285 11 0 1 285 40490047 40489763 1.580000e-127 466.0
38 TraesCS4A01G356600 chr1B 93.274 223 14 1 2145 2366 419975189 419975411 7.790000e-86 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G356600 chr4A 629934770 629937684 2914 False 2095.333333 5384 97.5760 1 2915 3 chr4A.!!$F3 2914
1 TraesCS4A01G356600 chr5D 538686698 538688642 1944 False 1728.500000 2579 96.1580 267 2371 2 chr5D.!!$F1 2104
2 TraesCS4A01G356600 chr4D 145378573 145379903 1330 True 2141.000000 2141 95.7240 1039 2368 1 chr4D.!!$R1 1329
3 TraesCS4A01G356600 chr4D 348039990 348041285 1295 True 1507.000000 1507 87.8160 791 2080 1 chr4D.!!$R2 1289
4 TraesCS4A01G356600 chr1A 80282314 80284257 1943 True 1448.000000 2015 93.8710 267 2368 2 chr1A.!!$R1 2101
5 TraesCS4A01G356600 chr3D 339816747 339818679 1932 False 1292.500000 1940 89.0485 267 2368 2 chr3D.!!$F1 2101
6 TraesCS4A01G356600 chr2B 54561563 54563207 1644 True 1325.000000 1901 92.3990 267 2079 2 chr2B.!!$R3 1812
7 TraesCS4A01G356600 chr1D 80683840 80684967 1127 False 1796.000000 1796 95.3980 1240 2367 1 chr1D.!!$F2 1127
8 TraesCS4A01G356600 chr1D 80674237 80674761 524 False 839.000000 839 95.4460 267 793 1 chr1D.!!$F1 526
9 TraesCS4A01G356600 chr7D 271454794 271456153 1359 False 1694.000000 1694 89.0910 706 2079 1 chr7D.!!$F2 1373
10 TraesCS4A01G356600 chr3B 592328980 592330400 1420 True 1618.000000 1618 87.4570 948 2371 1 chr3B.!!$R1 1423
11 TraesCS4A01G356600 chr6A 571574603 571576005 1402 False 1530.000000 1530 86.7040 695 2076 1 chr6A.!!$F1 1381
12 TraesCS4A01G356600 chr7A 62735754 62736360 606 False 1099.000000 1099 99.3410 267 873 1 chr7A.!!$F1 606
13 TraesCS4A01G356600 chr5A 78448978 78449823 845 False 846.500000 937 93.8835 267 1194 2 chr5A.!!$F1 927
14 TraesCS4A01G356600 chr5B 680318884 680319399 515 True 725.000000 725 91.9690 2395 2915 1 chr5B.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.106819 CCCTCCCTTGCTGGATCAAG 60.107 60.0 0.00 0.0 42.23 3.02 F
59 60 0.231279 GCTGTTCCGTACGTGTGTTG 59.769 55.0 15.21 0.0 0.00 3.33 F
103 104 0.374758 CGCTGGTCATCGGTGATTTG 59.625 55.0 0.00 0.0 36.60 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1945 0.615331 TGGGCTAGGTGCTCTTCTTG 59.385 55.00 0.0 0.0 44.09 3.02 R
1873 2036 2.633481 ACCTACTCACCCAAACAGACTC 59.367 50.00 0.0 0.0 0.00 3.36 R
2069 2242 9.315363 ACACATATAACATAGGTTTCCCAAAAA 57.685 29.63 0.0 0.0 38.45 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.205731 TCTCCTCCCTCCCTTGCT 58.794 61.111 0.00 0.00 0.00 3.91
18 19 1.306482 TCTCCTCCCTCCCTTGCTG 60.306 63.158 0.00 0.00 0.00 4.41
19 20 2.285668 TCCTCCCTCCCTTGCTGG 60.286 66.667 0.00 0.00 0.00 4.85
20 21 2.285668 CCTCCCTCCCTTGCTGGA 60.286 66.667 0.00 0.00 38.35 3.86
21 22 1.695597 CCTCCCTCCCTTGCTGGAT 60.696 63.158 0.00 0.00 38.35 3.41
22 23 1.704007 CCTCCCTCCCTTGCTGGATC 61.704 65.000 0.00 0.00 38.35 3.36
23 24 0.984961 CTCCCTCCCTTGCTGGATCA 60.985 60.000 0.00 0.00 38.35 2.92
24 25 0.549902 TCCCTCCCTTGCTGGATCAA 60.550 55.000 0.00 0.00 38.35 2.57
25 26 0.106819 CCCTCCCTTGCTGGATCAAG 60.107 60.000 0.00 0.00 42.23 3.02
26 27 0.914644 CCTCCCTTGCTGGATCAAGA 59.085 55.000 0.00 0.00 44.61 3.02
27 28 1.283029 CCTCCCTTGCTGGATCAAGAA 59.717 52.381 0.00 0.00 44.61 2.52
28 29 2.641305 CTCCCTTGCTGGATCAAGAAG 58.359 52.381 0.00 2.15 44.61 2.85
29 30 1.283029 TCCCTTGCTGGATCAAGAAGG 59.717 52.381 16.02 16.02 44.61 3.46
30 31 1.283029 CCCTTGCTGGATCAAGAAGGA 59.717 52.381 21.16 3.00 44.61 3.36
31 32 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
32 33 2.641305 CTTGCTGGATCAAGAAGGAGG 58.359 52.381 0.00 0.00 44.61 4.30
33 34 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
34 35 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
35 36 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
36 37 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
37 38 2.100584 CTGGATCAAGAAGGAGGAGACG 59.899 54.545 0.00 0.00 0.00 4.18
38 39 2.104170 GGATCAAGAAGGAGGAGACGT 58.896 52.381 0.00 0.00 0.00 4.34
39 40 2.159170 GGATCAAGAAGGAGGAGACGTG 60.159 54.545 0.00 0.00 0.00 4.49
40 41 1.257743 TCAAGAAGGAGGAGACGTGG 58.742 55.000 0.00 0.00 0.00 4.94
41 42 0.390472 CAAGAAGGAGGAGACGTGGC 60.390 60.000 0.00 0.00 0.00 5.01
42 43 0.543174 AAGAAGGAGGAGACGTGGCT 60.543 55.000 0.00 0.00 0.00 4.75
43 44 1.216710 GAAGGAGGAGACGTGGCTG 59.783 63.158 0.00 0.00 0.00 4.85
44 45 1.534235 AAGGAGGAGACGTGGCTGT 60.534 57.895 0.00 0.00 0.00 4.40
45 46 1.122019 AAGGAGGAGACGTGGCTGTT 61.122 55.000 0.00 0.00 0.00 3.16
46 47 1.079750 GGAGGAGACGTGGCTGTTC 60.080 63.158 0.00 0.00 0.00 3.18
47 48 1.079750 GAGGAGACGTGGCTGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
48 49 2.432628 GGAGACGTGGCTGTTCCG 60.433 66.667 0.00 0.00 37.80 4.30
49 50 2.338984 GAGACGTGGCTGTTCCGT 59.661 61.111 0.00 0.00 37.80 4.69
50 51 1.582968 GAGACGTGGCTGTTCCGTA 59.417 57.895 0.00 0.00 37.80 4.02
51 52 0.731855 GAGACGTGGCTGTTCCGTAC 60.732 60.000 0.00 0.00 37.80 3.67
52 53 2.049802 ACGTGGCTGTTCCGTACG 60.050 61.111 8.69 8.69 39.39 3.67
53 54 2.049802 CGTGGCTGTTCCGTACGT 60.050 61.111 15.21 0.00 37.80 3.57
54 55 2.369629 CGTGGCTGTTCCGTACGTG 61.370 63.158 15.21 5.96 37.80 4.49
55 56 1.300388 GTGGCTGTTCCGTACGTGT 60.300 57.895 15.21 0.00 37.80 4.49
56 57 1.300311 TGGCTGTTCCGTACGTGTG 60.300 57.895 15.21 0.00 37.80 3.82
57 58 1.300388 GGCTGTTCCGTACGTGTGT 60.300 57.895 15.21 0.00 0.00 3.72
58 59 0.877213 GGCTGTTCCGTACGTGTGTT 60.877 55.000 15.21 0.00 0.00 3.32
59 60 0.231279 GCTGTTCCGTACGTGTGTTG 59.769 55.000 15.21 0.00 0.00 3.33
60 61 1.842720 CTGTTCCGTACGTGTGTTGA 58.157 50.000 15.21 0.00 0.00 3.18
61 62 2.195096 CTGTTCCGTACGTGTGTTGAA 58.805 47.619 15.21 6.41 0.00 2.69
62 63 1.925847 TGTTCCGTACGTGTGTTGAAC 59.074 47.619 19.43 19.43 33.80 3.18
63 64 1.071959 GTTCCGTACGTGTGTTGAACG 60.072 52.381 15.21 0.00 46.32 3.95
64 65 1.199859 CCGTACGTGTGTTGAACGC 59.800 57.895 15.21 1.20 44.80 4.84
69 70 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
70 71 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
71 72 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
72 73 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
73 74 3.723348 GTTGAACGCGGAGGTGCC 61.723 66.667 12.47 0.00 0.00 5.01
94 95 3.554692 CGTTCGGCGCTGGTCATC 61.555 66.667 17.88 1.95 0.00 2.92
95 96 3.554692 GTTCGGCGCTGGTCATCG 61.555 66.667 17.88 4.84 0.00 3.84
96 97 4.812476 TTCGGCGCTGGTCATCGG 62.812 66.667 17.88 0.00 0.00 4.18
99 100 4.451150 GGCGCTGGTCATCGGTGA 62.451 66.667 7.64 0.00 34.25 4.02
100 101 2.202932 GCGCTGGTCATCGGTGAT 60.203 61.111 0.00 0.00 36.60 3.06
101 102 1.815421 GCGCTGGTCATCGGTGATT 60.815 57.895 0.00 0.00 36.60 2.57
102 103 1.369091 GCGCTGGTCATCGGTGATTT 61.369 55.000 0.00 0.00 36.60 2.17
103 104 0.374758 CGCTGGTCATCGGTGATTTG 59.625 55.000 0.00 0.00 36.60 2.32
104 105 0.734889 GCTGGTCATCGGTGATTTGG 59.265 55.000 0.00 0.00 36.60 3.28
105 106 1.678728 GCTGGTCATCGGTGATTTGGA 60.679 52.381 0.00 0.00 36.60 3.53
106 107 2.923121 CTGGTCATCGGTGATTTGGAT 58.077 47.619 0.00 0.00 36.60 3.41
107 108 2.874701 CTGGTCATCGGTGATTTGGATC 59.125 50.000 0.00 0.00 36.60 3.36
108 109 2.238395 TGGTCATCGGTGATTTGGATCA 59.762 45.455 0.00 0.00 39.92 2.92
118 119 3.766151 TGATTTGGATCACGTCGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
132 133 4.790810 TCGAGTACGACTACATCATCAC 57.209 45.455 0.00 0.00 43.81 3.06
133 134 3.558829 TCGAGTACGACTACATCATCACC 59.441 47.826 0.00 0.00 43.81 4.02
134 135 3.604085 CGAGTACGACTACATCATCACCG 60.604 52.174 0.00 0.00 42.66 4.94
135 136 3.276857 AGTACGACTACATCATCACCGT 58.723 45.455 0.00 0.00 0.00 4.83
136 137 3.693085 AGTACGACTACATCATCACCGTT 59.307 43.478 0.00 0.00 0.00 4.44
137 138 3.146618 ACGACTACATCATCACCGTTC 57.853 47.619 0.00 0.00 0.00 3.95
138 139 2.753452 ACGACTACATCATCACCGTTCT 59.247 45.455 0.00 0.00 0.00 3.01
139 140 3.192844 ACGACTACATCATCACCGTTCTT 59.807 43.478 0.00 0.00 0.00 2.52
140 141 4.174009 CGACTACATCATCACCGTTCTTT 58.826 43.478 0.00 0.00 0.00 2.52
141 142 4.625742 CGACTACATCATCACCGTTCTTTT 59.374 41.667 0.00 0.00 0.00 2.27
142 143 5.444613 CGACTACATCATCACCGTTCTTTTG 60.445 44.000 0.00 0.00 0.00 2.44
143 144 5.547465 ACTACATCATCACCGTTCTTTTGA 58.453 37.500 0.00 0.00 0.00 2.69
144 145 5.995282 ACTACATCATCACCGTTCTTTTGAA 59.005 36.000 0.00 0.00 35.84 2.69
163 164 4.806571 GCTTCCGTGCGTGATCTA 57.193 55.556 0.00 0.00 0.00 1.98
164 165 2.288969 GCTTCCGTGCGTGATCTAC 58.711 57.895 0.00 0.00 0.00 2.59
165 166 0.457853 GCTTCCGTGCGTGATCTACA 60.458 55.000 0.00 0.00 0.00 2.74
166 167 1.990799 CTTCCGTGCGTGATCTACAA 58.009 50.000 0.00 0.00 0.00 2.41
167 168 2.333926 CTTCCGTGCGTGATCTACAAA 58.666 47.619 0.00 0.00 0.00 2.83
168 169 1.990799 TCCGTGCGTGATCTACAAAG 58.009 50.000 0.00 0.00 0.00 2.77
169 170 1.542472 TCCGTGCGTGATCTACAAAGA 59.458 47.619 0.00 0.00 35.80 2.52
170 171 2.165641 TCCGTGCGTGATCTACAAAGAT 59.834 45.455 0.00 0.00 45.46 2.40
171 172 3.379057 TCCGTGCGTGATCTACAAAGATA 59.621 43.478 0.00 0.00 42.73 1.98
172 173 4.037565 TCCGTGCGTGATCTACAAAGATAT 59.962 41.667 0.00 0.00 42.73 1.63
173 174 4.148871 CCGTGCGTGATCTACAAAGATATG 59.851 45.833 0.00 0.00 42.73 1.78
174 175 4.740205 CGTGCGTGATCTACAAAGATATGT 59.260 41.667 0.00 0.00 42.73 2.29
175 176 5.912955 CGTGCGTGATCTACAAAGATATGTA 59.087 40.000 0.00 0.00 42.73 2.29
193 194 8.404765 AGATATGTAGATGCATCTAATCACTCG 58.595 37.037 32.72 0.00 40.77 4.18
194 195 5.774498 TGTAGATGCATCTAATCACTCGT 57.226 39.130 32.72 10.09 40.77 4.18
195 196 6.149129 TGTAGATGCATCTAATCACTCGTT 57.851 37.500 32.72 9.60 40.77 3.85
196 197 5.979517 TGTAGATGCATCTAATCACTCGTTG 59.020 40.000 32.72 0.00 40.77 4.10
197 198 3.806521 AGATGCATCTAATCACTCGTTGC 59.193 43.478 27.73 0.00 34.85 4.17
198 199 3.251479 TGCATCTAATCACTCGTTGCT 57.749 42.857 0.00 0.00 0.00 3.91
199 200 4.385358 TGCATCTAATCACTCGTTGCTA 57.615 40.909 0.00 0.00 0.00 3.49
200 201 4.363138 TGCATCTAATCACTCGTTGCTAG 58.637 43.478 0.00 0.00 0.00 3.42
201 202 4.097892 TGCATCTAATCACTCGTTGCTAGA 59.902 41.667 0.00 0.00 0.00 2.43
202 203 5.221322 TGCATCTAATCACTCGTTGCTAGAT 60.221 40.000 0.00 0.00 33.52 1.98
203 204 5.118357 GCATCTAATCACTCGTTGCTAGATG 59.882 44.000 19.85 19.85 43.09 2.90
204 205 6.442112 CATCTAATCACTCGTTGCTAGATGA 58.558 40.000 19.67 5.21 43.00 2.92
205 206 6.451064 TCTAATCACTCGTTGCTAGATGAA 57.549 37.500 0.00 0.00 0.00 2.57
206 207 6.266323 TCTAATCACTCGTTGCTAGATGAAC 58.734 40.000 0.00 0.00 0.00 3.18
207 208 4.727507 ATCACTCGTTGCTAGATGAACT 57.272 40.909 0.00 0.00 0.00 3.01
208 209 4.098055 TCACTCGTTGCTAGATGAACTC 57.902 45.455 0.00 0.00 0.00 3.01
209 210 3.119459 TCACTCGTTGCTAGATGAACTCC 60.119 47.826 0.00 0.00 0.00 3.85
210 211 3.093057 ACTCGTTGCTAGATGAACTCCT 58.907 45.455 0.00 0.00 0.00 3.69
211 212 4.096532 CACTCGTTGCTAGATGAACTCCTA 59.903 45.833 0.00 0.00 0.00 2.94
212 213 4.336993 ACTCGTTGCTAGATGAACTCCTAG 59.663 45.833 0.00 0.00 36.38 3.02
213 214 4.524053 TCGTTGCTAGATGAACTCCTAGA 58.476 43.478 0.00 0.00 35.55 2.43
214 215 5.133941 TCGTTGCTAGATGAACTCCTAGAT 58.866 41.667 0.00 0.00 35.55 1.98
215 216 5.009110 TCGTTGCTAGATGAACTCCTAGATG 59.991 44.000 0.00 0.00 35.55 2.90
216 217 5.009110 CGTTGCTAGATGAACTCCTAGATGA 59.991 44.000 0.00 0.00 35.55 2.92
217 218 6.294453 CGTTGCTAGATGAACTCCTAGATGAT 60.294 42.308 0.00 0.00 35.55 2.45
218 219 6.832520 TGCTAGATGAACTCCTAGATGATC 57.167 41.667 0.00 0.00 35.55 2.92
219 220 6.551085 TGCTAGATGAACTCCTAGATGATCT 58.449 40.000 0.00 0.00 35.55 2.75
220 221 7.009550 TGCTAGATGAACTCCTAGATGATCTT 58.990 38.462 0.00 0.00 35.55 2.40
221 222 7.039853 TGCTAGATGAACTCCTAGATGATCTTG 60.040 40.741 0.00 0.00 35.55 3.02
222 223 6.669125 AGATGAACTCCTAGATGATCTTGG 57.331 41.667 15.49 15.49 40.13 3.61
223 224 6.142498 AGATGAACTCCTAGATGATCTTGGT 58.858 40.000 19.73 3.88 39.80 3.67
224 225 5.604758 TGAACTCCTAGATGATCTTGGTG 57.395 43.478 19.73 19.21 39.80 4.17
225 226 5.272402 TGAACTCCTAGATGATCTTGGTGA 58.728 41.667 24.48 7.77 39.80 4.02
226 227 5.721480 TGAACTCCTAGATGATCTTGGTGAA 59.279 40.000 24.48 11.49 39.80 3.18
227 228 6.213397 TGAACTCCTAGATGATCTTGGTGAAA 59.787 38.462 24.48 11.23 39.80 2.69
228 229 6.821616 ACTCCTAGATGATCTTGGTGAAAT 57.178 37.500 24.48 6.44 39.80 2.17
229 230 6.590068 ACTCCTAGATGATCTTGGTGAAATG 58.410 40.000 24.48 11.80 39.80 2.32
230 231 6.385176 ACTCCTAGATGATCTTGGTGAAATGA 59.615 38.462 24.48 5.37 39.80 2.57
231 232 6.824553 TCCTAGATGATCTTGGTGAAATGAG 58.175 40.000 19.73 0.00 39.80 2.90
232 233 6.385176 TCCTAGATGATCTTGGTGAAATGAGT 59.615 38.462 19.73 0.00 39.80 3.41
233 234 7.565029 TCCTAGATGATCTTGGTGAAATGAGTA 59.435 37.037 19.73 0.00 39.80 2.59
234 235 7.871973 CCTAGATGATCTTGGTGAAATGAGTAG 59.128 40.741 13.75 0.00 35.18 2.57
235 236 6.590068 AGATGATCTTGGTGAAATGAGTAGG 58.410 40.000 0.00 0.00 0.00 3.18
236 237 6.385176 AGATGATCTTGGTGAAATGAGTAGGA 59.615 38.462 0.00 0.00 0.00 2.94
237 238 6.373005 TGATCTTGGTGAAATGAGTAGGAA 57.627 37.500 0.00 0.00 0.00 3.36
238 239 6.778821 TGATCTTGGTGAAATGAGTAGGAAA 58.221 36.000 0.00 0.00 0.00 3.13
239 240 7.230747 TGATCTTGGTGAAATGAGTAGGAAAA 58.769 34.615 0.00 0.00 0.00 2.29
240 241 7.890127 TGATCTTGGTGAAATGAGTAGGAAAAT 59.110 33.333 0.00 0.00 0.00 1.82
241 242 8.655935 ATCTTGGTGAAATGAGTAGGAAAATT 57.344 30.769 0.00 0.00 0.00 1.82
242 243 8.477419 TCTTGGTGAAATGAGTAGGAAAATTT 57.523 30.769 0.00 0.00 0.00 1.82
243 244 8.923270 TCTTGGTGAAATGAGTAGGAAAATTTT 58.077 29.630 2.28 2.28 0.00 1.82
244 245 9.546428 CTTGGTGAAATGAGTAGGAAAATTTTT 57.454 29.630 4.63 0.00 0.00 1.94
245 246 8.885494 TGGTGAAATGAGTAGGAAAATTTTTG 57.115 30.769 4.63 0.00 0.00 2.44
246 247 8.482128 TGGTGAAATGAGTAGGAAAATTTTTGT 58.518 29.630 4.63 0.00 0.00 2.83
247 248 9.325198 GGTGAAATGAGTAGGAAAATTTTTGTT 57.675 29.630 4.63 0.00 0.00 2.83
253 254 8.419076 TGAGTAGGAAAATTTTTGTTTTCTGC 57.581 30.769 4.63 1.41 43.94 4.26
254 255 8.037758 TGAGTAGGAAAATTTTTGTTTTCTGCA 58.962 29.630 4.63 0.00 43.94 4.41
255 256 8.785329 AGTAGGAAAATTTTTGTTTTCTGCAA 57.215 26.923 4.63 0.00 43.94 4.08
256 257 8.664798 AGTAGGAAAATTTTTGTTTTCTGCAAC 58.335 29.630 4.63 5.77 43.94 4.17
257 258 6.541969 AGGAAAATTTTTGTTTTCTGCAACG 58.458 32.000 4.63 0.00 43.94 4.10
258 259 6.148645 AGGAAAATTTTTGTTTTCTGCAACGT 59.851 30.769 4.63 0.00 43.94 3.99
259 260 6.799441 GGAAAATTTTTGTTTTCTGCAACGTT 59.201 30.769 4.63 0.00 43.94 3.99
260 261 7.958025 GGAAAATTTTTGTTTTCTGCAACGTTA 59.042 29.630 4.63 0.00 43.94 3.18
261 262 8.648422 AAAATTTTTGTTTTCTGCAACGTTAC 57.352 26.923 0.00 0.00 0.00 2.50
262 263 5.765072 TTTTTGTTTTCTGCAACGTTACC 57.235 34.783 0.00 0.00 0.00 2.85
263 264 3.423996 TTGTTTTCTGCAACGTTACCC 57.576 42.857 0.00 0.00 0.00 3.69
264 265 2.366533 TGTTTTCTGCAACGTTACCCA 58.633 42.857 0.00 0.00 0.00 4.51
265 266 2.753452 TGTTTTCTGCAACGTTACCCAA 59.247 40.909 0.00 0.00 0.00 4.12
752 754 9.874205 ACTACATTTGAATTTATTTCATGGTGG 57.126 29.630 0.00 0.00 43.73 4.61
753 755 9.316730 CTACATTTGAATTTATTTCATGGTGGG 57.683 33.333 0.00 0.00 43.73 4.61
754 756 7.915930 ACATTTGAATTTATTTCATGGTGGGA 58.084 30.769 0.00 0.00 43.73 4.37
755 757 7.823799 ACATTTGAATTTATTTCATGGTGGGAC 59.176 33.333 0.00 0.00 43.73 4.46
756 758 6.924913 TTGAATTTATTTCATGGTGGGACA 57.075 33.333 0.00 0.00 43.73 4.02
757 759 6.528537 TGAATTTATTTCATGGTGGGACAG 57.471 37.500 0.00 0.00 38.19 3.51
758 760 6.252233 TGAATTTATTTCATGGTGGGACAGA 58.748 36.000 0.00 0.00 38.19 3.41
759 761 6.896860 TGAATTTATTTCATGGTGGGACAGAT 59.103 34.615 0.00 0.00 38.19 2.90
760 762 7.399765 TGAATTTATTTCATGGTGGGACAGATT 59.600 33.333 0.00 0.00 38.19 2.40
761 763 8.837099 AATTTATTTCATGGTGGGACAGATTA 57.163 30.769 0.00 0.00 41.80 1.75
762 764 9.438163 AATTTATTTCATGGTGGGACAGATTAT 57.562 29.630 0.00 0.00 41.80 1.28
765 767 9.739276 TTATTTCATGGTGGGACAGATTATATC 57.261 33.333 0.00 0.00 41.80 1.63
766 768 6.762077 TTCATGGTGGGACAGATTATATCA 57.238 37.500 0.00 0.00 41.80 2.15
767 769 6.957853 TCATGGTGGGACAGATTATATCAT 57.042 37.500 0.00 0.00 41.80 2.45
768 770 7.333779 TCATGGTGGGACAGATTATATCATT 57.666 36.000 0.00 0.00 41.80 2.57
769 771 7.758609 TCATGGTGGGACAGATTATATCATTT 58.241 34.615 0.00 0.00 41.80 2.32
770 772 8.889445 TCATGGTGGGACAGATTATATCATTTA 58.111 33.333 0.00 0.00 41.80 1.40
771 773 8.950210 CATGGTGGGACAGATTATATCATTTAC 58.050 37.037 0.00 0.00 41.80 2.01
772 774 8.275187 TGGTGGGACAGATTATATCATTTACT 57.725 34.615 0.00 0.00 41.80 2.24
773 775 8.375506 TGGTGGGACAGATTATATCATTTACTC 58.624 37.037 0.00 0.00 41.80 2.59
774 776 8.598041 GGTGGGACAGATTATATCATTTACTCT 58.402 37.037 0.00 0.00 41.80 3.24
787 789 7.886629 ATCATTTACTCTATTTGCACCATGT 57.113 32.000 0.00 0.00 0.00 3.21
788 790 8.978874 ATCATTTACTCTATTTGCACCATGTA 57.021 30.769 0.00 0.00 0.00 2.29
789 791 8.978874 TCATTTACTCTATTTGCACCATGTAT 57.021 30.769 0.00 0.00 0.00 2.29
801 803 5.468592 TGCACCATGTATTTGTGATGTTTC 58.531 37.500 3.55 0.00 31.66 2.78
982 1124 9.060347 TGCTATAATCCATGTTTTCTCAATCTC 57.940 33.333 0.00 0.00 0.00 2.75
1388 1546 7.980662 CCACAAATCTGATGCCATTTTATGTTA 59.019 33.333 0.00 0.00 0.00 2.41
1726 1884 3.254903 TGAAGCGCTTGTGAAGTCTAGTA 59.745 43.478 30.47 0.00 0.00 1.82
1770 1929 6.230472 CGATGACCTTTGGGATGTAATATCA 58.770 40.000 0.00 0.00 36.25 2.15
1774 1933 6.601613 TGACCTTTGGGATGTAATATCAACAC 59.398 38.462 0.00 0.00 36.25 3.32
1873 2036 6.007936 TCATGAAACTTACCCAAATCAACG 57.992 37.500 0.00 0.00 0.00 4.10
2007 2177 6.516527 GCTTTTGGAGATTTGGTATGTGAACA 60.517 38.462 0.00 0.00 0.00 3.18
2069 2242 3.054875 TGGCTCTATTGCACTCTGATTGT 60.055 43.478 0.00 0.00 34.04 2.71
2123 2314 5.767665 TGAAACCTGTGCTATATGTGTTGTT 59.232 36.000 0.00 0.00 0.00 2.83
2126 2317 6.925610 ACCTGTGCTATATGTGTTGTTATG 57.074 37.500 0.00 0.00 0.00 1.90
2128 2319 6.884295 ACCTGTGCTATATGTGTTGTTATGTT 59.116 34.615 0.00 0.00 0.00 2.71
2129 2320 7.148255 ACCTGTGCTATATGTGTTGTTATGTTG 60.148 37.037 0.00 0.00 0.00 3.33
2130 2321 7.148255 CCTGTGCTATATGTGTTGTTATGTTGT 60.148 37.037 0.00 0.00 0.00 3.32
2131 2322 7.747888 TGTGCTATATGTGTTGTTATGTTGTC 58.252 34.615 0.00 0.00 0.00 3.18
2132 2323 7.606073 TGTGCTATATGTGTTGTTATGTTGTCT 59.394 33.333 0.00 0.00 0.00 3.41
2135 2326 9.490663 GCTATATGTGTTGTTATGTTGTCTTTC 57.509 33.333 0.00 0.00 0.00 2.62
2138 2329 9.897744 ATATGTGTTGTTATGTTGTCTTTCTTG 57.102 29.630 0.00 0.00 0.00 3.02
2142 2333 9.944663 GTGTTGTTATGTTGTCTTTCTTGAATA 57.055 29.630 0.00 0.00 0.00 1.75
2284 2479 2.633488 GTTCCGCTCTTTTGCTCCTAT 58.367 47.619 0.00 0.00 0.00 2.57
2285 2480 3.010420 GTTCCGCTCTTTTGCTCCTATT 58.990 45.455 0.00 0.00 0.00 1.73
2352 2547 2.162208 CCATTCCATGACAGTTGGTTCG 59.838 50.000 0.00 0.00 35.64 3.95
2368 2563 0.681564 TTCGCCAACCAAACACACCT 60.682 50.000 0.00 0.00 0.00 4.00
2371 2566 1.001815 CGCCAACCAAACACACCTTAG 60.002 52.381 0.00 0.00 0.00 2.18
2372 2567 1.339929 GCCAACCAAACACACCTTAGG 59.660 52.381 0.00 0.00 0.00 2.69
2373 2568 2.661718 CCAACCAAACACACCTTAGGT 58.338 47.619 0.00 0.00 35.62 3.08
2374 2569 3.822940 CCAACCAAACACACCTTAGGTA 58.177 45.455 2.52 0.00 32.11 3.08
2375 2570 4.403734 CCAACCAAACACACCTTAGGTAT 58.596 43.478 2.52 0.00 32.11 2.73
2376 2571 4.457949 CCAACCAAACACACCTTAGGTATC 59.542 45.833 2.52 0.00 32.11 2.24
2377 2572 4.296621 ACCAAACACACCTTAGGTATCC 57.703 45.455 2.52 0.00 32.11 2.59
2378 2573 3.914435 ACCAAACACACCTTAGGTATCCT 59.086 43.478 2.52 0.00 37.71 3.24
2379 2574 4.019591 ACCAAACACACCTTAGGTATCCTC 60.020 45.833 2.52 0.00 34.61 3.71
2380 2575 4.181578 CAAACACACCTTAGGTATCCTCG 58.818 47.826 2.52 0.00 34.61 4.63
2381 2576 1.755380 ACACACCTTAGGTATCCTCGC 59.245 52.381 2.52 0.00 34.61 5.03
2382 2577 1.754803 CACACCTTAGGTATCCTCGCA 59.245 52.381 2.52 0.00 34.61 5.10
2383 2578 1.755380 ACACCTTAGGTATCCTCGCAC 59.245 52.381 2.52 0.00 34.61 5.34
2384 2579 1.030457 ACCTTAGGTATCCTCGCACG 58.970 55.000 0.15 0.00 34.61 5.34
2385 2580 1.315690 CCTTAGGTATCCTCGCACGA 58.684 55.000 0.00 0.00 34.61 4.35
2386 2581 1.679680 CCTTAGGTATCCTCGCACGAA 59.320 52.381 0.00 0.00 34.61 3.85
2387 2582 2.543238 CCTTAGGTATCCTCGCACGAAC 60.543 54.545 0.00 0.00 34.61 3.95
2388 2583 1.753930 TAGGTATCCTCGCACGAACA 58.246 50.000 0.00 0.00 34.61 3.18
2389 2584 0.892755 AGGTATCCTCGCACGAACAA 59.107 50.000 0.00 0.00 0.00 2.83
2390 2585 0.997196 GGTATCCTCGCACGAACAAC 59.003 55.000 0.00 0.00 0.00 3.32
2391 2586 0.997196 GTATCCTCGCACGAACAACC 59.003 55.000 0.00 0.00 0.00 3.77
2392 2587 0.108520 TATCCTCGCACGAACAACCC 60.109 55.000 0.00 0.00 0.00 4.11
2393 2588 3.411351 CCTCGCACGAACAACCCG 61.411 66.667 0.00 0.00 0.00 5.28
2416 2611 3.077556 CACCCCTCTCCCCAGTCG 61.078 72.222 0.00 0.00 0.00 4.18
2419 2614 3.141488 CCCTCTCCCCAGTCGACG 61.141 72.222 10.46 5.16 0.00 5.12
2421 2616 2.752238 CTCTCCCCAGTCGACGCT 60.752 66.667 10.46 0.00 0.00 5.07
2425 2621 1.001764 TCCCCAGTCGACGCTTCTA 60.002 57.895 10.46 0.00 0.00 2.10
2435 2631 1.483424 GACGCTTCTAGCACATCCGC 61.483 60.000 0.00 0.00 42.58 5.54
2436 2632 1.227089 CGCTTCTAGCACATCCGCT 60.227 57.895 0.00 0.00 42.58 5.52
2437 2633 0.807667 CGCTTCTAGCACATCCGCTT 60.808 55.000 0.00 0.00 42.58 4.68
2438 2634 0.933796 GCTTCTAGCACATCCGCTTC 59.066 55.000 0.00 0.00 43.56 3.86
2439 2635 1.576356 CTTCTAGCACATCCGCTTCC 58.424 55.000 0.00 0.00 43.56 3.46
2440 2636 0.178068 TTCTAGCACATCCGCTTCCC 59.822 55.000 0.00 0.00 43.56 3.97
2595 2791 2.363795 CTGGTGTCGGAGGGGCTA 60.364 66.667 0.00 0.00 0.00 3.93
2752 2948 1.751351 CACTACCTTCGAGGATCTGCA 59.249 52.381 7.76 0.00 37.67 4.41
2807 3003 2.159366 CGACCTACAGACTGGTGTCATC 60.159 54.545 7.51 0.00 45.20 2.92
2809 3005 2.092323 CCTACAGACTGGTGTCATCGA 58.908 52.381 7.51 0.00 45.20 3.59
2821 3017 3.499737 CATCGAGGGCAACGTGGC 61.500 66.667 6.30 6.30 42.88 5.01
2897 3093 4.855340 TCCATGAAAGGTTCTATCCCAAC 58.145 43.478 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.373707 CCAGCAAGGGAGGGAGGAG 61.374 68.421 0.00 0.00 0.00 3.69
3 4 1.695597 ATCCAGCAAGGGAGGGAGG 60.696 63.158 0.00 0.00 41.08 4.30
4 5 0.984961 TGATCCAGCAAGGGAGGGAG 60.985 60.000 0.00 0.00 41.08 4.30
5 6 0.549902 TTGATCCAGCAAGGGAGGGA 60.550 55.000 0.00 0.00 41.08 4.20
6 7 0.106819 CTTGATCCAGCAAGGGAGGG 60.107 60.000 0.00 0.00 41.08 4.30
7 8 0.914644 TCTTGATCCAGCAAGGGAGG 59.085 55.000 4.79 0.00 44.14 4.30
8 9 2.641305 CTTCTTGATCCAGCAAGGGAG 58.359 52.381 4.79 0.74 44.14 4.30
9 10 1.283029 CCTTCTTGATCCAGCAAGGGA 59.717 52.381 4.79 0.00 44.14 4.20
10 11 1.283029 TCCTTCTTGATCCAGCAAGGG 59.717 52.381 17.39 0.00 44.14 3.95
11 12 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
12 13 2.238144 TCCTCCTTCTTGATCCAGCAAG 59.762 50.000 0.00 0.00 45.10 4.01
13 14 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
14 15 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
15 16 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
16 17 2.100584 CGTCTCCTCCTTCTTGATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
17 18 2.103373 CGTCTCCTCCTTCTTGATCCA 58.897 52.381 0.00 0.00 0.00 3.41
18 19 2.104170 ACGTCTCCTCCTTCTTGATCC 58.896 52.381 0.00 0.00 0.00 3.36
19 20 2.159170 CCACGTCTCCTCCTTCTTGATC 60.159 54.545 0.00 0.00 0.00 2.92
20 21 1.827969 CCACGTCTCCTCCTTCTTGAT 59.172 52.381 0.00 0.00 0.00 2.57
21 22 1.257743 CCACGTCTCCTCCTTCTTGA 58.742 55.000 0.00 0.00 0.00 3.02
22 23 0.390472 GCCACGTCTCCTCCTTCTTG 60.390 60.000 0.00 0.00 0.00 3.02
23 24 0.543174 AGCCACGTCTCCTCCTTCTT 60.543 55.000 0.00 0.00 0.00 2.52
24 25 1.077625 AGCCACGTCTCCTCCTTCT 59.922 57.895 0.00 0.00 0.00 2.85
25 26 1.216710 CAGCCACGTCTCCTCCTTC 59.783 63.158 0.00 0.00 0.00 3.46
26 27 1.122019 AACAGCCACGTCTCCTCCTT 61.122 55.000 0.00 0.00 0.00 3.36
27 28 1.534235 AACAGCCACGTCTCCTCCT 60.534 57.895 0.00 0.00 0.00 3.69
28 29 1.079750 GAACAGCCACGTCTCCTCC 60.080 63.158 0.00 0.00 0.00 4.30
29 30 1.079750 GGAACAGCCACGTCTCCTC 60.080 63.158 0.00 0.00 36.34 3.71
30 31 2.932234 CGGAACAGCCACGTCTCCT 61.932 63.158 0.00 0.00 35.94 3.69
31 32 1.870055 TACGGAACAGCCACGTCTCC 61.870 60.000 0.00 0.00 41.53 3.71
32 33 0.731855 GTACGGAACAGCCACGTCTC 60.732 60.000 0.00 0.00 41.53 3.36
33 34 1.288127 GTACGGAACAGCCACGTCT 59.712 57.895 0.00 0.00 41.53 4.18
34 35 2.084681 CGTACGGAACAGCCACGTC 61.085 63.158 7.57 0.00 41.53 4.34
35 36 2.049802 CGTACGGAACAGCCACGT 60.050 61.111 7.57 0.00 43.88 4.49
36 37 2.049802 ACGTACGGAACAGCCACG 60.050 61.111 21.06 0.00 40.72 4.94
37 38 1.300388 ACACGTACGGAACAGCCAC 60.300 57.895 21.06 0.00 35.94 5.01
38 39 1.300311 CACACGTACGGAACAGCCA 60.300 57.895 21.06 0.00 35.94 4.75
39 40 0.877213 AACACACGTACGGAACAGCC 60.877 55.000 21.06 0.00 0.00 4.85
40 41 0.231279 CAACACACGTACGGAACAGC 59.769 55.000 21.06 0.00 0.00 4.40
41 42 1.842720 TCAACACACGTACGGAACAG 58.157 50.000 21.06 7.04 0.00 3.16
42 43 1.925847 GTTCAACACACGTACGGAACA 59.074 47.619 21.06 0.00 33.96 3.18
43 44 1.071959 CGTTCAACACACGTACGGAAC 60.072 52.381 21.06 18.86 32.80 3.62
44 45 1.198767 CGTTCAACACACGTACGGAA 58.801 50.000 21.06 9.16 32.80 4.30
45 46 1.208009 GCGTTCAACACACGTACGGA 61.208 55.000 21.06 2.65 39.92 4.69
46 47 1.199859 GCGTTCAACACACGTACGG 59.800 57.895 21.06 11.05 39.92 4.02
47 48 1.155158 CGCGTTCAACACACGTACG 60.155 57.895 15.01 15.01 39.92 3.67
48 49 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
49 50 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
50 51 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
51 52 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
52 53 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
53 54 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
54 55 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
55 56 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
56 57 3.723348 GGCACCTCCGCGTTCAAC 61.723 66.667 4.92 0.00 0.00 3.18
78 79 3.554692 CGATGACCAGCGCCGAAC 61.555 66.667 2.29 0.00 32.02 3.95
79 80 4.812476 CCGATGACCAGCGCCGAA 62.812 66.667 2.29 0.00 39.12 4.30
82 83 3.740128 ATCACCGATGACCAGCGCC 62.740 63.158 2.29 0.00 39.12 6.53
83 84 1.369091 AAATCACCGATGACCAGCGC 61.369 55.000 0.00 0.00 39.12 5.92
84 85 0.374758 CAAATCACCGATGACCAGCG 59.625 55.000 0.18 0.18 37.79 5.18
85 86 0.734889 CCAAATCACCGATGACCAGC 59.265 55.000 0.00 0.00 37.79 4.85
86 87 2.401583 TCCAAATCACCGATGACCAG 57.598 50.000 0.00 0.00 37.79 4.00
87 88 2.238395 TGATCCAAATCACCGATGACCA 59.762 45.455 0.00 0.00 37.79 4.02
88 89 2.917933 TGATCCAAATCACCGATGACC 58.082 47.619 0.00 0.00 37.79 4.02
96 97 5.760783 CGTACTCGACGTGATCCAAATCAC 61.761 50.000 3.58 8.20 46.68 3.06
97 98 3.729762 CGTACTCGACGTGATCCAAATCA 60.730 47.826 3.58 0.00 46.86 2.57
98 99 2.782192 CGTACTCGACGTGATCCAAATC 59.218 50.000 3.58 0.00 46.86 2.17
99 100 2.793933 CGTACTCGACGTGATCCAAAT 58.206 47.619 3.58 0.00 46.86 2.32
100 101 2.251869 CGTACTCGACGTGATCCAAA 57.748 50.000 3.58 0.00 46.86 3.28
101 102 3.982213 CGTACTCGACGTGATCCAA 57.018 52.632 3.58 0.00 46.86 3.53
111 112 3.558829 GGTGATGATGTAGTCGTACTCGA 59.441 47.826 0.00 0.00 44.12 4.04
112 113 3.604085 CGGTGATGATGTAGTCGTACTCG 60.604 52.174 0.00 0.00 38.55 4.18
113 114 3.311871 ACGGTGATGATGTAGTCGTACTC 59.688 47.826 0.00 0.00 0.00 2.59
114 115 3.276857 ACGGTGATGATGTAGTCGTACT 58.723 45.455 0.00 0.00 0.00 2.73
115 116 3.687572 ACGGTGATGATGTAGTCGTAC 57.312 47.619 0.00 0.00 0.00 3.67
116 117 3.943381 AGAACGGTGATGATGTAGTCGTA 59.057 43.478 0.00 0.00 0.00 3.43
117 118 2.753452 AGAACGGTGATGATGTAGTCGT 59.247 45.455 0.00 0.00 0.00 4.34
118 119 3.422417 AGAACGGTGATGATGTAGTCG 57.578 47.619 0.00 0.00 0.00 4.18
119 120 5.637810 TCAAAAGAACGGTGATGATGTAGTC 59.362 40.000 0.00 0.00 0.00 2.59
120 121 5.547465 TCAAAAGAACGGTGATGATGTAGT 58.453 37.500 0.00 0.00 0.00 2.73
121 122 6.307155 GTTCAAAAGAACGGTGATGATGTAG 58.693 40.000 0.00 0.00 0.00 2.74
122 123 6.236017 GTTCAAAAGAACGGTGATGATGTA 57.764 37.500 0.00 0.00 0.00 2.29
123 124 5.108385 GTTCAAAAGAACGGTGATGATGT 57.892 39.130 0.00 0.00 0.00 3.06
134 135 2.372350 CACGGAAGCGTTCAAAAGAAC 58.628 47.619 0.00 0.00 0.00 3.01
135 136 1.268335 GCACGGAAGCGTTCAAAAGAA 60.268 47.619 0.00 0.00 0.00 2.52
136 137 0.306533 GCACGGAAGCGTTCAAAAGA 59.693 50.000 0.00 0.00 0.00 2.52
137 138 2.783440 GCACGGAAGCGTTCAAAAG 58.217 52.632 0.00 0.00 0.00 2.27
146 147 0.457853 TGTAGATCACGCACGGAAGC 60.458 55.000 0.00 0.00 0.00 3.86
147 148 1.990799 TTGTAGATCACGCACGGAAG 58.009 50.000 0.00 0.00 0.00 3.46
148 149 2.029739 TCTTTGTAGATCACGCACGGAA 60.030 45.455 0.00 0.00 0.00 4.30
149 150 1.542472 TCTTTGTAGATCACGCACGGA 59.458 47.619 0.00 0.00 0.00 4.69
150 151 1.990799 TCTTTGTAGATCACGCACGG 58.009 50.000 0.00 0.00 0.00 4.94
151 152 4.740205 ACATATCTTTGTAGATCACGCACG 59.260 41.667 0.00 0.00 41.38 5.34
167 168 8.404765 CGAGTGATTAGATGCATCTACATATCT 58.595 37.037 31.46 23.96 39.00 1.98
168 169 8.187480 ACGAGTGATTAGATGCATCTACATATC 58.813 37.037 31.46 28.47 39.00 1.63
169 170 8.060931 ACGAGTGATTAGATGCATCTACATAT 57.939 34.615 31.46 23.27 39.00 1.78
170 171 7.454260 ACGAGTGATTAGATGCATCTACATA 57.546 36.000 31.46 19.94 39.00 2.29
171 172 6.338214 ACGAGTGATTAGATGCATCTACAT 57.662 37.500 31.46 25.56 39.00 2.29
172 173 5.774498 ACGAGTGATTAGATGCATCTACA 57.226 39.130 31.46 24.38 39.00 2.74
173 174 5.107683 GCAACGAGTGATTAGATGCATCTAC 60.108 44.000 31.46 23.57 39.00 2.59
174 175 4.984785 GCAACGAGTGATTAGATGCATCTA 59.015 41.667 28.69 28.69 38.32 1.98
175 176 3.806521 GCAACGAGTGATTAGATGCATCT 59.193 43.478 30.85 30.85 40.86 2.90
176 177 3.806521 AGCAACGAGTGATTAGATGCATC 59.193 43.478 19.37 19.37 34.89 3.91
177 178 3.801698 AGCAACGAGTGATTAGATGCAT 58.198 40.909 0.00 0.00 34.89 3.96
178 179 3.251479 AGCAACGAGTGATTAGATGCA 57.749 42.857 0.00 0.00 34.89 3.96
179 180 4.611943 TCTAGCAACGAGTGATTAGATGC 58.388 43.478 0.00 0.00 0.00 3.91
180 181 6.442112 TCATCTAGCAACGAGTGATTAGATG 58.558 40.000 22.09 22.09 44.66 2.90
181 182 6.641169 TCATCTAGCAACGAGTGATTAGAT 57.359 37.500 0.00 1.59 36.70 1.98
182 183 6.095580 AGTTCATCTAGCAACGAGTGATTAGA 59.904 38.462 0.00 0.00 32.67 2.10
183 184 6.269315 AGTTCATCTAGCAACGAGTGATTAG 58.731 40.000 0.00 0.00 0.00 1.73
184 185 6.208988 AGTTCATCTAGCAACGAGTGATTA 57.791 37.500 0.00 0.00 0.00 1.75
185 186 5.078411 AGTTCATCTAGCAACGAGTGATT 57.922 39.130 0.00 0.00 0.00 2.57
186 187 4.440802 GGAGTTCATCTAGCAACGAGTGAT 60.441 45.833 0.00 0.00 0.00 3.06
187 188 3.119459 GGAGTTCATCTAGCAACGAGTGA 60.119 47.826 0.00 0.00 0.00 3.41
188 189 3.119316 AGGAGTTCATCTAGCAACGAGTG 60.119 47.826 0.00 0.00 0.00 3.51
189 190 3.093057 AGGAGTTCATCTAGCAACGAGT 58.907 45.455 0.00 0.00 0.00 4.18
190 191 3.791973 AGGAGTTCATCTAGCAACGAG 57.208 47.619 0.00 0.00 0.00 4.18
191 192 4.524053 TCTAGGAGTTCATCTAGCAACGA 58.476 43.478 0.00 0.00 34.52 3.85
192 193 4.902443 TCTAGGAGTTCATCTAGCAACG 57.098 45.455 0.00 0.00 34.52 4.10
193 194 6.398234 TCATCTAGGAGTTCATCTAGCAAC 57.602 41.667 0.00 0.00 34.52 4.17
194 195 7.009550 AGATCATCTAGGAGTTCATCTAGCAA 58.990 38.462 0.00 0.00 34.52 3.91
195 196 6.551085 AGATCATCTAGGAGTTCATCTAGCA 58.449 40.000 0.00 0.00 34.52 3.49
196 197 7.315142 CAAGATCATCTAGGAGTTCATCTAGC 58.685 42.308 0.00 0.00 34.52 3.42
197 198 7.451255 ACCAAGATCATCTAGGAGTTCATCTAG 59.549 40.741 0.00 0.00 35.52 2.43
198 199 7.232330 CACCAAGATCATCTAGGAGTTCATCTA 59.768 40.741 0.00 0.00 0.00 1.98
199 200 6.041865 CACCAAGATCATCTAGGAGTTCATCT 59.958 42.308 0.00 0.00 0.00 2.90
200 201 6.041409 TCACCAAGATCATCTAGGAGTTCATC 59.959 42.308 0.00 0.00 0.00 2.92
201 202 5.901853 TCACCAAGATCATCTAGGAGTTCAT 59.098 40.000 0.00 0.00 0.00 2.57
202 203 5.272402 TCACCAAGATCATCTAGGAGTTCA 58.728 41.667 0.00 0.00 0.00 3.18
203 204 5.860941 TCACCAAGATCATCTAGGAGTTC 57.139 43.478 0.00 0.00 0.00 3.01
204 205 6.627087 TTTCACCAAGATCATCTAGGAGTT 57.373 37.500 0.00 0.00 0.00 3.01
205 206 6.385176 TCATTTCACCAAGATCATCTAGGAGT 59.615 38.462 0.00 0.00 0.00 3.85
206 207 6.824553 TCATTTCACCAAGATCATCTAGGAG 58.175 40.000 0.00 0.00 0.00 3.69
207 208 6.385176 ACTCATTTCACCAAGATCATCTAGGA 59.615 38.462 0.00 0.00 0.00 2.94
208 209 6.590068 ACTCATTTCACCAAGATCATCTAGG 58.410 40.000 0.00 0.00 0.00 3.02
209 210 7.871973 CCTACTCATTTCACCAAGATCATCTAG 59.128 40.741 0.00 0.00 0.00 2.43
210 211 7.565029 TCCTACTCATTTCACCAAGATCATCTA 59.435 37.037 0.00 0.00 0.00 1.98
211 212 6.385176 TCCTACTCATTTCACCAAGATCATCT 59.615 38.462 0.00 0.00 0.00 2.90
212 213 6.586344 TCCTACTCATTTCACCAAGATCATC 58.414 40.000 0.00 0.00 0.00 2.92
213 214 6.566079 TCCTACTCATTTCACCAAGATCAT 57.434 37.500 0.00 0.00 0.00 2.45
214 215 6.373005 TTCCTACTCATTTCACCAAGATCA 57.627 37.500 0.00 0.00 0.00 2.92
215 216 7.687941 TTTTCCTACTCATTTCACCAAGATC 57.312 36.000 0.00 0.00 0.00 2.75
216 217 8.655935 AATTTTCCTACTCATTTCACCAAGAT 57.344 30.769 0.00 0.00 0.00 2.40
217 218 8.477419 AAATTTTCCTACTCATTTCACCAAGA 57.523 30.769 0.00 0.00 0.00 3.02
218 219 9.546428 AAAAATTTTCCTACTCATTTCACCAAG 57.454 29.630 3.41 0.00 0.00 3.61
219 220 9.323985 CAAAAATTTTCCTACTCATTTCACCAA 57.676 29.630 3.41 0.00 0.00 3.67
220 221 8.482128 ACAAAAATTTTCCTACTCATTTCACCA 58.518 29.630 3.41 0.00 0.00 4.17
221 222 8.887036 ACAAAAATTTTCCTACTCATTTCACC 57.113 30.769 3.41 0.00 0.00 4.02
227 228 9.045223 GCAGAAAACAAAAATTTTCCTACTCAT 57.955 29.630 3.41 0.00 45.72 2.90
228 229 8.037758 TGCAGAAAACAAAAATTTTCCTACTCA 58.962 29.630 3.41 0.00 45.72 3.41
229 230 8.419076 TGCAGAAAACAAAAATTTTCCTACTC 57.581 30.769 3.41 0.00 45.72 2.59
230 231 8.664798 GTTGCAGAAAACAAAAATTTTCCTACT 58.335 29.630 3.41 0.00 45.72 2.57
231 232 7.634432 CGTTGCAGAAAACAAAAATTTTCCTAC 59.366 33.333 3.41 0.00 45.72 3.18
232 233 7.332182 ACGTTGCAGAAAACAAAAATTTTCCTA 59.668 29.630 3.41 0.00 45.72 2.94
233 234 6.148645 ACGTTGCAGAAAACAAAAATTTTCCT 59.851 30.769 3.41 0.00 45.72 3.36
234 235 6.310960 ACGTTGCAGAAAACAAAAATTTTCC 58.689 32.000 3.41 0.00 45.72 3.13
235 236 7.774224 AACGTTGCAGAAAACAAAAATTTTC 57.226 28.000 0.00 3.34 45.18 2.29
236 237 7.746916 GGTAACGTTGCAGAAAACAAAAATTTT 59.253 29.630 18.24 0.00 34.46 1.82
237 238 7.237871 GGTAACGTTGCAGAAAACAAAAATTT 58.762 30.769 18.24 0.00 0.00 1.82
238 239 6.183360 GGGTAACGTTGCAGAAAACAAAAATT 60.183 34.615 18.24 0.00 37.60 1.82
239 240 5.292345 GGGTAACGTTGCAGAAAACAAAAAT 59.708 36.000 18.24 0.00 37.60 1.82
240 241 4.626172 GGGTAACGTTGCAGAAAACAAAAA 59.374 37.500 18.24 0.00 37.60 1.94
241 242 4.174762 GGGTAACGTTGCAGAAAACAAAA 58.825 39.130 18.24 0.00 37.60 2.44
242 243 3.192844 TGGGTAACGTTGCAGAAAACAAA 59.807 39.130 18.24 0.00 37.60 2.83
243 244 2.753452 TGGGTAACGTTGCAGAAAACAA 59.247 40.909 18.24 0.00 37.60 2.83
244 245 2.366533 TGGGTAACGTTGCAGAAAACA 58.633 42.857 18.24 4.27 37.60 2.83
245 246 3.110358 GTTGGGTAACGTTGCAGAAAAC 58.890 45.455 18.24 11.57 37.60 2.43
246 247 2.753452 TGTTGGGTAACGTTGCAGAAAA 59.247 40.909 18.24 2.38 39.71 2.29
247 248 2.097791 GTGTTGGGTAACGTTGCAGAAA 59.902 45.455 18.24 6.17 39.71 2.52
248 249 1.671845 GTGTTGGGTAACGTTGCAGAA 59.328 47.619 18.24 6.93 39.71 3.02
249 250 1.134340 AGTGTTGGGTAACGTTGCAGA 60.134 47.619 18.24 0.59 39.71 4.26
250 251 1.263217 GAGTGTTGGGTAACGTTGCAG 59.737 52.381 18.24 0.00 39.71 4.41
251 252 1.134340 AGAGTGTTGGGTAACGTTGCA 60.134 47.619 18.24 0.00 39.71 4.08
252 253 1.589803 AGAGTGTTGGGTAACGTTGC 58.410 50.000 11.99 9.89 39.71 4.17
253 254 3.001939 GTGAAGAGTGTTGGGTAACGTTG 59.998 47.826 11.99 0.00 39.71 4.10
254 255 3.118519 AGTGAAGAGTGTTGGGTAACGTT 60.119 43.478 5.88 5.88 39.71 3.99
255 256 2.433239 AGTGAAGAGTGTTGGGTAACGT 59.567 45.455 0.00 0.00 39.71 3.99
256 257 3.107642 AGTGAAGAGTGTTGGGTAACG 57.892 47.619 0.00 0.00 39.71 3.18
257 258 3.985925 CGTAGTGAAGAGTGTTGGGTAAC 59.014 47.826 0.00 0.00 37.32 2.50
258 259 3.006110 CCGTAGTGAAGAGTGTTGGGTAA 59.994 47.826 0.00 0.00 0.00 2.85
259 260 2.559668 CCGTAGTGAAGAGTGTTGGGTA 59.440 50.000 0.00 0.00 0.00 3.69
260 261 1.343465 CCGTAGTGAAGAGTGTTGGGT 59.657 52.381 0.00 0.00 0.00 4.51
261 262 1.337823 CCCGTAGTGAAGAGTGTTGGG 60.338 57.143 0.00 0.00 0.00 4.12
262 263 1.343465 ACCCGTAGTGAAGAGTGTTGG 59.657 52.381 0.00 0.00 0.00 3.77
263 264 2.814280 ACCCGTAGTGAAGAGTGTTG 57.186 50.000 0.00 0.00 0.00 3.33
745 747 8.950210 GTAAATGATATAATCTGTCCCACCATG 58.050 37.037 0.00 0.00 0.00 3.66
746 748 8.894592 AGTAAATGATATAATCTGTCCCACCAT 58.105 33.333 0.00 0.00 0.00 3.55
747 749 8.275187 AGTAAATGATATAATCTGTCCCACCA 57.725 34.615 0.00 0.00 0.00 4.17
748 750 8.598041 AGAGTAAATGATATAATCTGTCCCACC 58.402 37.037 0.00 0.00 0.00 4.61
761 763 9.578576 ACATGGTGCAAATAGAGTAAATGATAT 57.421 29.630 0.00 0.00 0.00 1.63
762 764 8.978874 ACATGGTGCAAATAGAGTAAATGATA 57.021 30.769 0.00 0.00 0.00 2.15
763 765 7.886629 ACATGGTGCAAATAGAGTAAATGAT 57.113 32.000 0.00 0.00 0.00 2.45
764 766 8.978874 ATACATGGTGCAAATAGAGTAAATGA 57.021 30.769 0.00 0.00 0.00 2.57
767 769 9.019656 ACAAATACATGGTGCAAATAGAGTAAA 57.980 29.630 0.00 0.00 0.00 2.01
768 770 8.458052 CACAAATACATGGTGCAAATAGAGTAA 58.542 33.333 0.00 0.00 0.00 2.24
769 771 7.826744 TCACAAATACATGGTGCAAATAGAGTA 59.173 33.333 0.00 0.00 32.69 2.59
770 772 6.658816 TCACAAATACATGGTGCAAATAGAGT 59.341 34.615 0.00 0.00 32.69 3.24
771 773 7.087409 TCACAAATACATGGTGCAAATAGAG 57.913 36.000 0.00 0.00 32.69 2.43
772 774 7.122501 ACATCACAAATACATGGTGCAAATAGA 59.877 33.333 0.00 0.00 32.69 1.98
773 775 7.259882 ACATCACAAATACATGGTGCAAATAG 58.740 34.615 0.00 0.00 32.69 1.73
774 776 7.167924 ACATCACAAATACATGGTGCAAATA 57.832 32.000 0.00 0.00 32.69 1.40
775 777 6.040209 ACATCACAAATACATGGTGCAAAT 57.960 33.333 0.00 0.00 32.69 2.32
776 778 5.465532 ACATCACAAATACATGGTGCAAA 57.534 34.783 0.00 0.00 32.69 3.68
777 779 5.465532 AACATCACAAATACATGGTGCAA 57.534 34.783 0.00 0.00 32.69 4.08
778 780 5.465532 AAACATCACAAATACATGGTGCA 57.534 34.783 0.00 0.00 32.69 4.57
779 781 4.558470 CGAAACATCACAAATACATGGTGC 59.442 41.667 0.00 0.00 32.69 5.01
780 782 5.794945 GTCGAAACATCACAAATACATGGTG 59.205 40.000 0.00 0.00 0.00 4.17
781 783 5.471797 TGTCGAAACATCACAAATACATGGT 59.528 36.000 0.00 0.00 0.00 3.55
782 784 5.937187 TGTCGAAACATCACAAATACATGG 58.063 37.500 0.00 0.00 0.00 3.66
783 785 7.077605 AGTTGTCGAAACATCACAAATACATG 58.922 34.615 11.33 0.00 34.73 3.21
784 786 7.202016 AGTTGTCGAAACATCACAAATACAT 57.798 32.000 11.33 0.00 34.73 2.29
785 787 6.612247 AGTTGTCGAAACATCACAAATACA 57.388 33.333 11.33 0.00 34.73 2.29
786 788 7.569297 TGTAGTTGTCGAAACATCACAAATAC 58.431 34.615 12.38 12.38 45.31 1.89
787 789 7.716768 TGTAGTTGTCGAAACATCACAAATA 57.283 32.000 11.33 1.42 34.73 1.40
788 790 6.612247 TGTAGTTGTCGAAACATCACAAAT 57.388 33.333 11.33 2.24 34.73 2.32
789 791 6.612247 ATGTAGTTGTCGAAACATCACAAA 57.388 33.333 11.33 0.00 34.73 2.83
982 1124 2.029649 CCATTTCTGTCCAGCCAACAAG 60.030 50.000 0.00 0.00 0.00 3.16
1726 1884 4.411013 TCGGGTATGTCATCATCATCTCT 58.589 43.478 0.00 0.00 35.70 3.10
1770 1929 6.072783 GCTCTTCTTGAAAATCTAGCAGTGTT 60.073 38.462 0.00 0.00 0.00 3.32
1774 1933 5.163774 GGTGCTCTTCTTGAAAATCTAGCAG 60.164 44.000 0.00 0.00 39.22 4.24
1786 1945 0.615331 TGGGCTAGGTGCTCTTCTTG 59.385 55.000 0.00 0.00 44.09 3.02
1873 2036 2.633481 ACCTACTCACCCAAACAGACTC 59.367 50.000 0.00 0.00 0.00 3.36
2069 2242 9.315363 ACACATATAACATAGGTTTCCCAAAAA 57.685 29.630 0.00 0.00 38.45 1.94
2167 2361 7.167302 CGACAGCATTTCATTTGTACTTTCAAA 59.833 33.333 0.00 0.00 40.74 2.69
2174 2368 7.566858 AATTTCGACAGCATTTCATTTGTAC 57.433 32.000 0.00 0.00 0.00 2.90
2284 2479 3.816523 GTCCGTTCCATTCCTGTGTTTAA 59.183 43.478 0.00 0.00 0.00 1.52
2285 2480 3.404899 GTCCGTTCCATTCCTGTGTTTA 58.595 45.455 0.00 0.00 0.00 2.01
2352 2547 1.339929 CCTAAGGTGTGTTTGGTTGGC 59.660 52.381 0.00 0.00 0.00 4.52
2368 2563 2.093890 TGTTCGTGCGAGGATACCTAA 58.906 47.619 0.00 0.00 31.76 2.69
2371 2566 0.997196 GTTGTTCGTGCGAGGATACC 59.003 55.000 0.00 0.00 37.17 2.73
2372 2567 0.997196 GGTTGTTCGTGCGAGGATAC 59.003 55.000 0.00 0.00 0.00 2.24
2373 2568 0.108520 GGGTTGTTCGTGCGAGGATA 60.109 55.000 0.00 0.00 0.00 2.59
2374 2569 1.375523 GGGTTGTTCGTGCGAGGAT 60.376 57.895 0.00 0.00 0.00 3.24
2375 2570 2.029964 GGGTTGTTCGTGCGAGGA 59.970 61.111 0.00 0.00 0.00 3.71
2376 2571 3.411351 CGGGTTGTTCGTGCGAGG 61.411 66.667 0.00 0.00 0.00 4.63
2377 2572 4.072088 GCGGGTTGTTCGTGCGAG 62.072 66.667 0.00 0.00 0.00 5.03
2378 2573 4.893601 TGCGGGTTGTTCGTGCGA 62.894 61.111 0.00 0.00 0.00 5.10
2379 2574 4.659874 GTGCGGGTTGTTCGTGCG 62.660 66.667 0.00 0.00 0.00 5.34
2380 2575 4.322385 GGTGCGGGTTGTTCGTGC 62.322 66.667 0.00 0.00 0.00 5.34
2381 2576 3.656045 GGGTGCGGGTTGTTCGTG 61.656 66.667 0.00 0.00 0.00 4.35
2382 2577 4.941309 GGGGTGCGGGTTGTTCGT 62.941 66.667 0.00 0.00 0.00 3.85
2383 2578 4.939368 TGGGGTGCGGGTTGTTCG 62.939 66.667 0.00 0.00 0.00 3.95
2384 2579 3.292159 GTGGGGTGCGGGTTGTTC 61.292 66.667 0.00 0.00 0.00 3.18
2385 2580 4.906537 GGTGGGGTGCGGGTTGTT 62.907 66.667 0.00 0.00 0.00 2.83
2413 2608 1.192793 GATGTGCTAGAAGCGTCGAC 58.807 55.000 5.18 5.18 46.26 4.20
2416 2611 1.483424 GCGGATGTGCTAGAAGCGTC 61.483 60.000 0.00 0.00 46.26 5.19
2419 2614 0.933796 GAAGCGGATGTGCTAGAAGC 59.066 55.000 0.00 0.00 46.60 3.86
2421 2616 0.178068 GGGAAGCGGATGTGCTAGAA 59.822 55.000 0.00 0.00 46.60 2.10
2435 2631 4.845307 GGGGAGGGGGAGGGGAAG 62.845 77.778 0.00 0.00 0.00 3.46
2730 2926 1.025812 AGATCCTCGAAGGTAGTGCG 58.974 55.000 0.00 0.00 36.53 5.34
2735 2931 1.063942 TCCTGCAGATCCTCGAAGGTA 60.064 52.381 17.39 0.00 36.53 3.08
2809 3005 4.778143 GGATCGCCACGTTGCCCT 62.778 66.667 5.98 0.00 0.00 5.19
2821 3017 1.875813 GCAGCTGTCGTGAGGATCG 60.876 63.158 16.64 0.00 38.61 3.69
2870 3066 5.312079 GGATAGAACCTTTCATGGAGGATG 58.688 45.833 19.07 0.00 37.72 3.51
2873 3069 3.459598 TGGGATAGAACCTTTCATGGAGG 59.540 47.826 12.75 12.75 40.24 4.30
2874 3070 4.778213 TGGGATAGAACCTTTCATGGAG 57.222 45.455 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.