AutoCloner

Multiple sequence alignment - TraesCS4A01G356500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G356500	chr4A	100.000	2534	0	0	1	2534	629924238	629926771	0.000000e+00	4680
1	TraesCS4A01G356500	chr4A	99.801	503	1	0	2032	2534	594959776	594960278	0.000000e+00	924
2	TraesCS4A01G356500	chr7A	99.008	1815	14	3	218	2031	62733949	62735760	0.000000e+00	3249
3	TraesCS4A01G356500	chr7A	98.835	515	4	2	2020	2534	94749158	94749670	0.000000e+00	917
4	TraesCS4A01G356500	chr7D	97.460	1811	44	2	222	2031	78506609	78508418	0.000000e+00	3088
5	TraesCS4A01G356500	chr7D	87.203	1766	184	25	219	1961	271432863	271434609	0.000000e+00	1971
6	TraesCS4A01G356500	chr2D	96.203	1633	55	6	213	1843	27770839	27769212	0.000000e+00	2665
7	TraesCS4A01G356500	chr2D	91.450	1076	85	6	959	2029	469109028	469107955	0.000000e+00	1471
8	TraesCS4A01G356500	chr5A	88.858	1822	142	40	222	2031	78447212	78448984	0.000000e+00	2183
9	TraesCS4A01G356500	chr5A	99.801	503	1	0	2032	2534	520414682	520415184	0.000000e+00	924
10	TraesCS4A01G356500	chr5D	97.120	1146	31	2	887	2031	538685560	538686704	0.000000e+00	1932
11	TraesCS4A01G356500	chr5D	86.845	935	109	7	218	1151	375284658	375283737	0.000000e+00	1033
12	TraesCS4A01G356500	chr1D	96.422	1146	39	2	887	2031	80673099	80674243	0.000000e+00	1888
13	TraesCS4A01G356500	chr1D	86.422	928	109	11	225	1151	478160534	478159623	0.000000e+00	1000
14	TraesCS4A01G356500	chr1D	86.329	929	106	13	225	1151	354507371	354506462	0.000000e+00	992
15	TraesCS4A01G356500	chr4D	96.178	1125	39	3	908	2031	145381037	145379916	0.000000e+00	1836
16	TraesCS4A01G356500	chr4D	87.379	309	28	3	222	529	494068278	494068576	6.710000e-91	344
17	TraesCS4A01G356500	chr1A	91.444	1087	88	4	222	1308	467751882	467752963	0.000000e+00	1487
18	TraesCS4A01G356500	chr1B	86.359	931	109	15	222	1151	313098085	313098998	0.000000e+00	1000
19	TraesCS4A01G356500	chr5B	99.801	503	1	0	2032	2534	569580109	569580611	0.000000e+00	924
20	TraesCS4A01G356500	chr4B	99.219	512	4	0	2023	2534	117036153	117035642	0.000000e+00	924
21	TraesCS4A01G356500	chr4B	99.801	503	1	0	2032	2534	488654675	488655177	0.000000e+00	924
22	TraesCS4A01G356500	chr3A	99.801	503	1	0	2032	2534	528545802	528546304	0.000000e+00	924
23	TraesCS4A01G356500	chr2A	99.801	503	1	0	2032	2534	410835054	410835556	0.000000e+00	924
24	TraesCS4A01G356500	chr2A	99.214	509	4	0	2026	2534	603584507	603583999	0.000000e+00	918
25	TraesCS4A01G356500	chr3D	88.169	355	39	3	218	571	339815414	339815766	1.080000e-113	420

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G356500	chr4A	629924238	629926771	2533	False	4680	4680	100.000	1	2534	1	chr4A.!!$F2	2533
1	TraesCS4A01G356500	chr4A	594959776	594960278	502	False	924	924	99.801	2032	2534	1	chr4A.!!$F1	502
2	TraesCS4A01G356500	chr7A	62733949	62735760	1811	False	3249	3249	99.008	218	2031	1	chr7A.!!$F1	1813
3	TraesCS4A01G356500	chr7A	94749158	94749670	512	False	917	917	98.835	2020	2534	1	chr7A.!!$F2	514
4	TraesCS4A01G356500	chr7D	78506609	78508418	1809	False	3088	3088	97.460	222	2031	1	chr7D.!!$F1	1809
5	TraesCS4A01G356500	chr7D	271432863	271434609	1746	False	1971	1971	87.203	219	1961	1	chr7D.!!$F2	1742
6	TraesCS4A01G356500	chr2D	27769212	27770839	1627	True	2665	2665	96.203	213	1843	1	chr2D.!!$R1	1630
7	TraesCS4A01G356500	chr2D	469107955	469109028	1073	True	1471	1471	91.450	959	2029	1	chr2D.!!$R2	1070
8	TraesCS4A01G356500	chr5A	78447212	78448984	1772	False	2183	2183	88.858	222	2031	1	chr5A.!!$F1	1809
9	TraesCS4A01G356500	chr5A	520414682	520415184	502	False	924	924	99.801	2032	2534	1	chr5A.!!$F2	502
10	TraesCS4A01G356500	chr5D	538685560	538686704	1144	False	1932	1932	97.120	887	2031	1	chr5D.!!$F1	1144
11	TraesCS4A01G356500	chr5D	375283737	375284658	921	True	1033	1033	86.845	218	1151	1	chr5D.!!$R1	933
12	TraesCS4A01G356500	chr1D	80673099	80674243	1144	False	1888	1888	96.422	887	2031	1	chr1D.!!$F1	1144
13	TraesCS4A01G356500	chr1D	478159623	478160534	911	True	1000	1000	86.422	225	1151	1	chr1D.!!$R2	926
14	TraesCS4A01G356500	chr1D	354506462	354507371	909	True	992	992	86.329	225	1151	1	chr1D.!!$R1	926
15	TraesCS4A01G356500	chr4D	145379916	145381037	1121	True	1836	1836	96.178	908	2031	1	chr4D.!!$R1	1123
16	TraesCS4A01G356500	chr1A	467751882	467752963	1081	False	1487	1487	91.444	222	1308	1	chr1A.!!$F1	1086
17	TraesCS4A01G356500	chr1B	313098085	313098998	913	False	1000	1000	86.359	222	1151	1	chr1B.!!$F1	929
18	TraesCS4A01G356500	chr5B	569580109	569580611	502	False	924	924	99.801	2032	2534	1	chr5B.!!$F1	502
19	TraesCS4A01G356500	chr4B	117035642	117036153	511	True	924	924	99.219	2023	2534	1	chr4B.!!$R1	511
20	TraesCS4A01G356500	chr4B	488654675	488655177	502	False	924	924	99.801	2032	2534	1	chr4B.!!$F1	502
21	TraesCS4A01G356500	chr3A	528545802	528546304	502	False	924	924	99.801	2032	2534	1	chr3A.!!$F1	502
22	TraesCS4A01G356500	chr2A	410835054	410835556	502	False	924	924	99.801	2032	2534	1	chr2A.!!$F1	502
23	TraesCS4A01G356500	chr2A	603583999	603584507	508	True	918	918	99.214	2026	2534	1	chr2A.!!$R1	508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
213	214	0.034477	ATCGGTGTTAAGGCCCAAGG	60.034	55.0	0.0	0.0	0.0	3.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1928	1992	0.251033	AAAGGTGGTAAGAACCCGGC	60.251	55.0	0.0	0.0	46.16	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
97	98	9.681062	TTTTTCGGAGAATATTTAGAATGGTCT	57.319	29.630	0.00	0.00	45.90	3.85
100	101	9.929180	TTCGGAGAATATTTAGAATGGTCTATG	57.071	33.333	0.00	0.00	45.90	2.23
101	102	9.090103	TCGGAGAATATTTAGAATGGTCTATGT	57.910	33.333	0.00	0.00	36.23	2.29
102	103	9.712305	CGGAGAATATTTAGAATGGTCTATGTT	57.288	33.333	0.00	0.00	36.23	2.71
140	141	3.469008	TTAGAATGGTCTATGTGGGCG	57.531	47.619	0.00	0.00	36.23	6.13
141	142	1.496060	AGAATGGTCTATGTGGGCGA	58.504	50.000	0.00	0.00	29.93	5.54
142	143	1.414181	AGAATGGTCTATGTGGGCGAG	59.586	52.381	0.00	0.00	29.93	5.03
143	144	1.412710	GAATGGTCTATGTGGGCGAGA	59.587	52.381	0.00	0.00	0.00	4.04
144	145	1.496060	ATGGTCTATGTGGGCGAGAA	58.504	50.000	0.00	0.00	0.00	2.87
145	146	0.824109	TGGTCTATGTGGGCGAGAAG	59.176	55.000	0.00	0.00	0.00	2.85
162	163	3.637714	GCACCGAGCAAGAAACGA	58.362	55.556	0.00	0.00	44.79	3.85
163	164	1.493311	GCACCGAGCAAGAAACGAG	59.507	57.895	0.00	0.00	44.79	4.18
164	165	1.222115	GCACCGAGCAAGAAACGAGT	61.222	55.000	0.00	0.00	44.79	4.18
165	166	0.784778	CACCGAGCAAGAAACGAGTC	59.215	55.000	0.00	0.00	0.00	3.36
166	167	0.674534	ACCGAGCAAGAAACGAGTCT	59.325	50.000	0.00	0.00	0.00	3.24
167	168	1.336056	ACCGAGCAAGAAACGAGTCTC	60.336	52.381	0.00	0.00	0.00	3.36
168	169	1.068194	CCGAGCAAGAAACGAGTCTCT	60.068	52.381	0.00	0.00	0.00	3.10
169	170	2.608261	CCGAGCAAGAAACGAGTCTCTT	60.608	50.000	0.00	0.00	31.99	2.85
175	176	3.224884	AGAAACGAGTCTCTTGCTAGC	57.775	47.619	8.10	8.10	0.00	3.42
176	177	2.823154	AGAAACGAGTCTCTTGCTAGCT	59.177	45.455	17.23	0.00	0.00	3.32
177	178	2.645730	AACGAGTCTCTTGCTAGCTG	57.354	50.000	17.23	9.05	0.00	4.24
178	179	0.814457	ACGAGTCTCTTGCTAGCTGG	59.186	55.000	17.23	8.65	0.00	4.85
179	180	0.527385	CGAGTCTCTTGCTAGCTGGC	60.527	60.000	16.23	16.23	0.00	4.85
180	181	0.179086	GAGTCTCTTGCTAGCTGGCC	60.179	60.000	20.33	0.00	0.00	5.36
181	182	1.153269	GTCTCTTGCTAGCTGGCCC	60.153	63.158	20.33	0.00	0.00	5.80
182	183	1.613332	TCTCTTGCTAGCTGGCCCA	60.613	57.895	20.33	5.20	0.00	5.36
183	184	1.153208	CTCTTGCTAGCTGGCCCAG	60.153	63.158	20.33	15.10	34.12	4.45
184	185	2.124403	CTTGCTAGCTGGCCCAGG	60.124	66.667	20.33	0.00	31.21	4.45
185	186	2.610546	TTGCTAGCTGGCCCAGGA	60.611	61.111	20.33	0.00	31.21	3.86
186	187	2.605854	CTTGCTAGCTGGCCCAGGAG	62.606	65.000	20.33	5.93	31.21	3.69
187	188	4.560743	GCTAGCTGGCCCAGGAGC	62.561	72.222	13.78	1.49	35.28	4.70
189	190	3.085947	TAGCTGGCCCAGGAGCTG	61.086	66.667	22.24	1.62	45.29	4.24
192	193	4.798344	CTGGCCCAGGAGCTGCTG	62.798	72.222	26.95	26.95	0.00	4.41
195	196	3.806667	GCCCAGGAGCTGCTGGAT	61.807	66.667	45.32	7.44	43.08	3.41
196	197	2.509916	CCCAGGAGCTGCTGGATC	59.490	66.667	45.32	7.11	43.08	3.36
197	198	2.108566	CCAGGAGCTGCTGGATCG	59.891	66.667	42.50	20.16	43.08	3.69
198	199	2.108566	CAGGAGCTGCTGGATCGG	59.891	66.667	26.30	0.00	0.00	4.18
199	200	2.364842	AGGAGCTGCTGGATCGGT	60.365	61.111	7.07	0.00	0.00	4.69
200	201	2.202987	GGAGCTGCTGGATCGGTG	60.203	66.667	7.01	0.00	0.00	4.94
201	202	2.581354	GAGCTGCTGGATCGGTGT	59.419	61.111	7.01	0.00	0.00	4.16
202	203	1.078848	GAGCTGCTGGATCGGTGTT	60.079	57.895	7.01	0.00	0.00	3.32
203	204	0.175760	GAGCTGCTGGATCGGTGTTA	59.824	55.000	7.01	0.00	0.00	2.41
204	205	0.613260	AGCTGCTGGATCGGTGTTAA	59.387	50.000	0.00	0.00	0.00	2.01
205	206	1.009829	GCTGCTGGATCGGTGTTAAG	58.990	55.000	0.00	0.00	0.00	1.85
206	207	1.656652	CTGCTGGATCGGTGTTAAGG	58.343	55.000	0.00	0.00	0.00	2.69
207	208	0.392461	TGCTGGATCGGTGTTAAGGC	60.392	55.000	0.00	0.00	0.00	4.35
208	209	1.095807	GCTGGATCGGTGTTAAGGCC	61.096	60.000	0.00	0.00	0.00	5.19
209	210	0.463833	CTGGATCGGTGTTAAGGCCC	60.464	60.000	0.00	0.00	0.00	5.80
210	211	1.202099	TGGATCGGTGTTAAGGCCCA	61.202	55.000	0.00	0.00	0.00	5.36
211	212	0.034863	GGATCGGTGTTAAGGCCCAA	60.035	55.000	0.00	0.00	0.00	4.12
212	213	1.379527	GATCGGTGTTAAGGCCCAAG	58.620	55.000	0.00	0.00	0.00	3.61
213	214	0.034477	ATCGGTGTTAAGGCCCAAGG	60.034	55.000	0.00	0.00	0.00	3.61
214	215	1.128809	TCGGTGTTAAGGCCCAAGGA	61.129	55.000	0.00	0.00	0.00	3.36
215	216	0.958876	CGGTGTTAAGGCCCAAGGAC	60.959	60.000	0.00	0.00	0.00	3.85
216	217	0.958876	GGTGTTAAGGCCCAAGGACG	60.959	60.000	0.00	0.00	34.63	4.79
1379	1434	6.821160	TCAGCCAATTTTTGTAGATCATACGA	59.179	34.615	0.00	0.00	0.00	3.43
1836	1896	7.617041	AGTTGGCTTAGATAGAAATTGTCAC	57.383	36.000	0.00	0.00	0.00	3.67
1928	1992	1.823899	GCCGGTTATGGAGCCAAGG	60.824	63.158	1.90	0.00	0.00	3.61

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	72	9.681062	AGACCATTCTAAATATTCTCCGAAAAA	57.319	29.630	0.00	0.00	0.00	1.94
74	75	9.929180	CATAGACCATTCTAAATATTCTCCGAA	57.071	33.333	0.00	0.00	37.88	4.30
75	76	9.090103	ACATAGACCATTCTAAATATTCTCCGA	57.910	33.333	0.00	0.00	37.88	4.55
76	77	9.712305	AACATAGACCATTCTAAATATTCTCCG	57.288	33.333	0.00	0.00	37.88	4.63
117	118	4.638421	CGCCCACATAGACCATTCTAAAAA	59.362	41.667	0.00	0.00	37.88	1.94
118	119	4.080807	TCGCCCACATAGACCATTCTAAAA	60.081	41.667	0.00	0.00	37.88	1.52
119	120	3.452990	TCGCCCACATAGACCATTCTAAA	59.547	43.478	0.00	0.00	37.88	1.85
120	121	3.035363	TCGCCCACATAGACCATTCTAA	58.965	45.455	0.00	0.00	37.88	2.10
121	122	2.628178	CTCGCCCACATAGACCATTCTA	59.372	50.000	0.00	0.00	38.76	2.10
122	123	1.414181	CTCGCCCACATAGACCATTCT	59.586	52.381	0.00	0.00	35.66	2.40
123	124	1.412710	TCTCGCCCACATAGACCATTC	59.587	52.381	0.00	0.00	0.00	2.67
124	125	1.496060	TCTCGCCCACATAGACCATT	58.504	50.000	0.00	0.00	0.00	3.16
125	126	1.414181	CTTCTCGCCCACATAGACCAT	59.586	52.381	0.00	0.00	0.00	3.55
126	127	0.824109	CTTCTCGCCCACATAGACCA	59.176	55.000	0.00	0.00	0.00	4.02
127	128	0.530870	GCTTCTCGCCCACATAGACC	60.531	60.000	0.00	0.00	0.00	3.85
128	129	0.175760	TGCTTCTCGCCCACATAGAC	59.824	55.000	0.00	0.00	38.05	2.59
129	130	0.175760	GTGCTTCTCGCCCACATAGA	59.824	55.000	0.00	0.00	38.05	1.98
130	131	0.811616	GGTGCTTCTCGCCCACATAG	60.812	60.000	0.00	0.00	39.47	2.23
131	132	1.220749	GGTGCTTCTCGCCCACATA	59.779	57.895	0.00	0.00	39.47	2.29
132	133	2.045926	GGTGCTTCTCGCCCACAT	60.046	61.111	0.00	0.00	39.47	3.21
133	134	4.680237	CGGTGCTTCTCGCCCACA	62.680	66.667	0.00	0.00	42.41	4.17
134	135	4.373116	TCGGTGCTTCTCGCCCAC	62.373	66.667	0.00	0.00	42.41	4.61
135	136	4.069232	CTCGGTGCTTCTCGCCCA	62.069	66.667	0.00	0.00	42.41	5.36
137	138	4.742201	TGCTCGGTGCTTCTCGCC	62.742	66.667	3.53	0.00	43.37	5.54
138	139	2.734673	CTTGCTCGGTGCTTCTCGC	61.735	63.158	3.53	0.00	43.37	5.03
139	140	0.667487	TTCTTGCTCGGTGCTTCTCG	60.667	55.000	3.53	0.00	43.37	4.04
140	141	1.195674	GTTTCTTGCTCGGTGCTTCTC	59.804	52.381	3.53	0.00	43.37	2.87
141	142	1.230324	GTTTCTTGCTCGGTGCTTCT	58.770	50.000	3.53	0.00	43.37	2.85
142	143	0.110644	CGTTTCTTGCTCGGTGCTTC	60.111	55.000	3.53	0.00	43.37	3.86
143	144	0.531974	TCGTTTCTTGCTCGGTGCTT	60.532	50.000	3.53	0.00	43.37	3.91
144	145	0.946221	CTCGTTTCTTGCTCGGTGCT	60.946	55.000	3.53	0.00	43.37	4.40
145	146	1.222115	ACTCGTTTCTTGCTCGGTGC	61.222	55.000	0.00	0.00	43.25	5.01
146	147	0.784778	GACTCGTTTCTTGCTCGGTG	59.215	55.000	0.00	0.00	0.00	4.94
147	148	0.674534	AGACTCGTTTCTTGCTCGGT	59.325	50.000	0.00	0.00	0.00	4.69
148	149	1.068194	AGAGACTCGTTTCTTGCTCGG	60.068	52.381	0.00	0.00	0.00	4.63
149	150	2.339728	AGAGACTCGTTTCTTGCTCG	57.660	50.000	0.00	0.00	0.00	5.03
154	155	3.257127	AGCTAGCAAGAGACTCGTTTCTT	59.743	43.478	18.83	0.00	34.79	2.52
155	156	2.823154	AGCTAGCAAGAGACTCGTTTCT	59.177	45.455	18.83	0.00	0.00	2.52
156	157	2.920490	CAGCTAGCAAGAGACTCGTTTC	59.080	50.000	18.83	0.00	0.00	2.78
157	158	2.353208	CCAGCTAGCAAGAGACTCGTTT	60.353	50.000	18.83	0.00	0.00	3.60
158	159	1.203523	CCAGCTAGCAAGAGACTCGTT	59.796	52.381	18.83	0.00	0.00	3.85
159	160	0.814457	CCAGCTAGCAAGAGACTCGT	59.186	55.000	18.83	0.00	0.00	4.18
160	161	0.527385	GCCAGCTAGCAAGAGACTCG	60.527	60.000	18.83	0.00	0.00	4.18
161	162	0.179086	GGCCAGCTAGCAAGAGACTC	60.179	60.000	18.83	0.00	0.00	3.36
162	163	1.621672	GGGCCAGCTAGCAAGAGACT	61.622	60.000	18.83	0.00	0.00	3.24
163	164	1.153269	GGGCCAGCTAGCAAGAGAC	60.153	63.158	18.83	3.95	0.00	3.36
164	165	1.613332	TGGGCCAGCTAGCAAGAGA	60.613	57.895	18.83	0.00	0.00	3.10
165	166	1.153208	CTGGGCCAGCTAGCAAGAG	60.153	63.158	22.68	3.15	0.00	2.85
166	167	2.673200	CCTGGGCCAGCTAGCAAGA	61.673	63.158	28.51	0.00	0.00	3.02
167	168	2.124403	CCTGGGCCAGCTAGCAAG	60.124	66.667	28.51	8.71	0.00	4.01
168	169	2.610546	TCCTGGGCCAGCTAGCAA	60.611	61.111	28.51	5.50	0.00	3.91
169	170	3.085947	CTCCTGGGCCAGCTAGCA	61.086	66.667	28.51	7.53	0.00	3.49
170	171	4.560743	GCTCCTGGGCCAGCTAGC	62.561	72.222	30.94	30.94	33.97	3.42
171	172	2.767496	AGCTCCTGGGCCAGCTAG	60.767	66.667	28.51	25.23	44.45	3.42
172	173	3.085947	CAGCTCCTGGGCCAGCTA	61.086	66.667	28.51	16.61	44.47	3.32
175	176	4.798344	CAGCAGCTCCTGGGCCAG	62.798	72.222	27.04	27.04	31.21	4.85
181	182	2.108566	CCGATCCAGCAGCTCCTG	59.891	66.667	0.00	0.00	34.12	3.86
182	183	2.364842	ACCGATCCAGCAGCTCCT	60.365	61.111	0.00	0.00	0.00	3.69
183	184	2.202987	CACCGATCCAGCAGCTCC	60.203	66.667	0.00	0.00	0.00	4.70
184	185	0.175760	TAACACCGATCCAGCAGCTC	59.824	55.000	0.00	0.00	0.00	4.09
185	186	0.613260	TTAACACCGATCCAGCAGCT	59.387	50.000	0.00	0.00	0.00	4.24
186	187	1.009829	CTTAACACCGATCCAGCAGC	58.990	55.000	0.00	0.00	0.00	5.25
187	188	1.656652	CCTTAACACCGATCCAGCAG	58.343	55.000	0.00	0.00	0.00	4.24
188	189	0.392461	GCCTTAACACCGATCCAGCA	60.392	55.000	0.00	0.00	0.00	4.41
189	190	1.095807	GGCCTTAACACCGATCCAGC	61.096	60.000	0.00	0.00	0.00	4.85
190	191	0.463833	GGGCCTTAACACCGATCCAG	60.464	60.000	0.84	0.00	0.00	3.86
191	192	1.202099	TGGGCCTTAACACCGATCCA	61.202	55.000	4.53	0.00	0.00	3.41
192	193	0.034863	TTGGGCCTTAACACCGATCC	60.035	55.000	4.53	0.00	0.00	3.36
193	194	1.379527	CTTGGGCCTTAACACCGATC	58.620	55.000	4.53	0.00	0.00	3.69
194	195	0.034477	CCTTGGGCCTTAACACCGAT	60.034	55.000	4.53	0.00	0.00	4.18
195	196	1.128809	TCCTTGGGCCTTAACACCGA	61.129	55.000	4.53	0.00	0.00	4.69
196	197	0.958876	GTCCTTGGGCCTTAACACCG	60.959	60.000	4.53	0.00	0.00	4.94
197	198	0.958876	CGTCCTTGGGCCTTAACACC	60.959	60.000	4.53	0.00	0.00	4.16
198	199	1.583495	GCGTCCTTGGGCCTTAACAC	61.583	60.000	4.53	0.00	0.00	3.32
199	200	1.302993	GCGTCCTTGGGCCTTAACA	60.303	57.895	4.53	0.00	0.00	2.41
200	201	0.251073	TAGCGTCCTTGGGCCTTAAC	59.749	55.000	4.53	0.00	0.00	2.01
201	202	0.539986	CTAGCGTCCTTGGGCCTTAA	59.460	55.000	4.53	0.00	0.00	1.85
202	203	1.335132	CCTAGCGTCCTTGGGCCTTA	61.335	60.000	4.53	0.00	31.32	2.69
203	204	2.670148	CCTAGCGTCCTTGGGCCTT	61.670	63.158	4.53	0.00	31.32	4.35
204	205	3.083997	CCTAGCGTCCTTGGGCCT	61.084	66.667	4.53	0.00	31.32	5.19
205	206	4.176752	CCCTAGCGTCCTTGGGCC	62.177	72.222	0.00	0.00	45.12	5.80
208	209	2.291043	ACACCCCTAGCGTCCTTGG	61.291	63.158	0.00	0.00	34.26	3.61
209	210	1.079127	CACACCCCTAGCGTCCTTG	60.079	63.158	0.00	0.00	0.00	3.61
210	211	1.125711	AACACACCCCTAGCGTCCTT	61.126	55.000	0.00	0.00	0.00	3.36
211	212	1.125711	AAACACACCCCTAGCGTCCT	61.126	55.000	0.00	0.00	0.00	3.85
212	213	0.953960	CAAACACACCCCTAGCGTCC	60.954	60.000	0.00	0.00	0.00	4.79
213	214	0.953960	CCAAACACACCCCTAGCGTC	60.954	60.000	0.00	0.00	0.00	5.19
214	215	1.072505	CCAAACACACCCCTAGCGT	59.927	57.895	0.00	0.00	0.00	5.07
215	216	0.536460	AACCAAACACACCCCTAGCG	60.536	55.000	0.00	0.00	0.00	4.26
216	217	0.958822	CAACCAAACACACCCCTAGC	59.041	55.000	0.00	0.00	0.00	3.42
431	432	1.152735	AGGGAGAGCGAGGCGATAA	60.153	57.895	0.00	0.00	0.00	1.75
1379	1434	7.094205	CCTTTCTAAAATAGATGCTGGTTGTGT	60.094	37.037	0.00	0.00	34.22	3.72
1836	1896	4.202141	TGGTTTCTTGAGGCAAAGAACATG	60.202	41.667	13.10	0.00	43.95	3.21
1928	1992	0.251033	AAAGGTGGTAAGAACCCGGC	60.251	55.000	0.00	0.00	46.16	6.13

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.