Multiple sequence alignment - TraesCS4A01G355600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G355600 chr4A 100.000 3680 0 0 1 3680 629465744 629469423 0.000000e+00 6796.0
1 TraesCS4A01G355600 chr4A 81.420 479 85 4 1 478 593824738 593825213 4.460000e-104 388.0
2 TraesCS4A01G355600 chr4A 93.200 250 15 2 616 864 259779162 259779410 2.090000e-97 366.0
3 TraesCS4A01G355600 chr5B 89.439 1676 123 27 2037 3680 680612942 680611289 0.000000e+00 2065.0
4 TraesCS4A01G355600 chr5B 86.211 921 74 27 927 1827 680614540 680613653 0.000000e+00 948.0
5 TraesCS4A01G355600 chr5B 87.549 514 60 4 1 512 680615780 680615269 3.160000e-165 592.0
6 TraesCS4A01G355600 chr5B 91.829 257 18 3 623 877 166549468 166549213 4.520000e-94 355.0
7 TraesCS4A01G355600 chr5B 95.161 62 3 0 863 924 680614906 680614845 8.410000e-17 99.0
8 TraesCS4A01G355600 chr5D 84.641 1504 120 61 1856 3305 539034927 539033481 0.000000e+00 1395.0
9 TraesCS4A01G355600 chr5D 87.299 559 42 18 935 1469 539035738 539035185 2.430000e-171 612.0
10 TraesCS4A01G355600 chr5D 93.930 313 19 0 3368 3680 539033488 539033176 1.200000e-129 473.0
11 TraesCS4A01G355600 chr5D 83.943 492 77 2 1 492 230031136 230030647 1.550000e-128 470.0
12 TraesCS4A01G355600 chr6D 83.366 505 78 6 1 503 144100665 144100165 2.590000e-126 462.0
13 TraesCS4A01G355600 chr6D 79.762 504 98 4 1 501 451786975 451786473 2.700000e-96 363.0
14 TraesCS4A01G355600 chr3D 90.801 337 29 2 2344 2679 465022088 465021753 2.020000e-122 449.0
15 TraesCS4A01G355600 chr3B 90.504 337 30 2 2344 2679 618434987 618434652 9.380000e-121 444.0
16 TraesCS4A01G355600 chr3A 90.504 337 30 2 2344 2679 608340655 608340320 9.380000e-121 444.0
17 TraesCS4A01G355600 chr2B 82.114 492 85 3 1 492 45782779 45783267 5.680000e-113 418.0
18 TraesCS4A01G355600 chr1D 82.452 473 80 2 1 473 247870793 247870324 9.510000e-111 411.0
19 TraesCS4A01G355600 chr1D 92.857 252 15 3 617 865 459051254 459051505 2.700000e-96 363.0
20 TraesCS4A01G355600 chr5A 81.743 482 82 5 1 478 522948051 522948530 7.400000e-107 398.0
21 TraesCS4A01G355600 chr5A 93.776 241 15 0 624 864 154444169 154444409 2.700000e-96 363.0
22 TraesCS4A01G355600 chr5A 82.812 64 10 1 2869 2931 559580433 559580370 5.130000e-04 56.5
23 TraesCS4A01G355600 chr2A 81.429 490 83 6 1 487 13817158 13816674 9.580000e-106 394.0
24 TraesCS4A01G355600 chr2A 93.802 242 15 0 623 864 206138210 206138451 7.510000e-97 364.0
25 TraesCS4A01G355600 chr4D 94.262 244 13 1 622 864 349249438 349249681 4.490000e-99 372.0
26 TraesCS4A01G355600 chr4D 93.802 242 14 1 624 864 32130002 32130243 2.700000e-96 363.0
27 TraesCS4A01G355600 chr2D 93.802 242 14 1 624 864 164300932 164301173 2.700000e-96 363.0
28 TraesCS4A01G355600 chr2D 93.776 241 15 0 625 865 267843867 267844107 2.700000e-96 363.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G355600 chr4A 629465744 629469423 3679 False 6796.000000 6796 100.000000 1 3680 1 chr4A.!!$F3 3679
1 TraesCS4A01G355600 chr5B 680611289 680615780 4491 True 926.000000 2065 89.590000 1 3680 4 chr5B.!!$R2 3679
2 TraesCS4A01G355600 chr5D 539033176 539035738 2562 True 826.666667 1395 88.623333 935 3680 3 chr5D.!!$R2 2745
3 TraesCS4A01G355600 chr6D 144100165 144100665 500 True 462.000000 462 83.366000 1 503 1 chr6D.!!$R1 502
4 TraesCS4A01G355600 chr6D 451786473 451786975 502 True 363.000000 363 79.762000 1 501 1 chr6D.!!$R2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.103208 GCGTGATGTTCGGATCCTCT 59.897 55.0 10.75 0.0 0.0 3.69 F
1676 2263 0.104487 GTCTCTAGTTTAGGCCCGCC 59.896 60.0 0.00 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2901 0.179116 CCGAGTGTCTGCAGAGATGG 60.179 60.0 18.89 15.22 0.0 3.51 R
3103 4270 0.031585 TCGATACTTTCCATCCGCCG 59.968 55.0 0.00 0.00 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.518636 GACGCCGTCTGTACTGTGTA 59.481 55.000 10.56 0.00 34.24 2.90
50 51 4.619227 CGCCCGTCTGGTGGTGTT 62.619 66.667 0.00 0.00 41.22 3.32
101 102 1.753078 CGACCTCCACCTCCATCGA 60.753 63.158 0.00 0.00 0.00 3.59
121 122 4.217210 CCACCAGGCCCACCAACA 62.217 66.667 0.00 0.00 39.06 3.33
161 162 2.034066 CCTCCTTTGCGGCCTTCA 59.966 61.111 0.00 0.00 0.00 3.02
162 163 1.603455 CCTCCTTTGCGGCCTTCAA 60.603 57.895 0.00 1.65 0.00 2.69
172 173 1.873165 GGCCTTCAATTTGACGCGA 59.127 52.632 15.93 0.00 0.00 5.87
229 230 0.103208 GCGTGATGTTCGGATCCTCT 59.897 55.000 10.75 0.00 0.00 3.69
237 238 0.909610 TTCGGATCCTCTGGCACCTT 60.910 55.000 10.75 0.00 0.00 3.50
244 245 2.915659 TCTGGCACCTTCGTCGGT 60.916 61.111 0.00 0.00 37.93 4.69
251 252 0.739813 CACCTTCGTCGGTTCCATCC 60.740 60.000 0.00 0.00 34.29 3.51
264 265 1.285280 TCCATCCCCGACATGTTCTT 58.715 50.000 0.00 0.00 0.00 2.52
268 269 1.191535 TCCCCGACATGTTCTTCGAT 58.808 50.000 0.00 0.00 37.43 3.59
309 310 0.836400 AAGGAAGGCGAGGGTGAGAA 60.836 55.000 0.00 0.00 0.00 2.87
352 353 4.547367 CGGCGGGGGATGGAAGAC 62.547 72.222 0.00 0.00 0.00 3.01
374 376 1.133199 AGAGTGGGGAATTTTGGCACA 60.133 47.619 0.00 0.00 0.00 4.57
391 393 3.149436 CACAAAAATAGTGCGGGATGG 57.851 47.619 0.00 0.00 0.00 3.51
464 467 2.807895 CGTTTCGCGTGTCCGGAT 60.808 61.111 7.81 0.00 35.54 4.18
466 469 1.864176 GTTTCGCGTGTCCGGATTT 59.136 52.632 7.81 0.00 33.68 2.17
468 471 0.600518 TTTCGCGTGTCCGGATTTCA 60.601 50.000 7.81 0.00 33.68 2.69
493 497 0.883370 GCCCTCCACGTTTTTCTCGT 60.883 55.000 0.00 0.00 42.33 4.18
522 776 3.572682 GGGGCTATTTTATGGTGCCTTAC 59.427 47.826 0.00 0.00 42.84 2.34
540 794 4.227527 CCTTACAAACCAGATAAGAGGGGT 59.772 45.833 0.00 0.00 34.43 4.95
541 795 5.281037 CCTTACAAACCAGATAAGAGGGGTT 60.281 44.000 0.00 0.00 45.13 4.11
551 805 7.505923 ACCAGATAAGAGGGGTTATTTTATTGC 59.494 37.037 0.00 0.00 0.00 3.56
630 885 0.881796 GGTGCAAAGCAACTACTCCC 59.118 55.000 0.00 0.00 43.73 4.30
631 886 1.545651 GGTGCAAAGCAACTACTCCCT 60.546 52.381 0.00 0.00 43.73 4.20
632 887 1.807142 GTGCAAAGCAACTACTCCCTC 59.193 52.381 0.00 0.00 41.47 4.30
633 888 1.699634 TGCAAAGCAACTACTCCCTCT 59.300 47.619 0.00 0.00 34.76 3.69
634 889 2.106511 TGCAAAGCAACTACTCCCTCTT 59.893 45.455 0.00 0.00 34.76 2.85
635 890 3.149981 GCAAAGCAACTACTCCCTCTTT 58.850 45.455 0.00 0.00 0.00 2.52
636 891 3.189495 GCAAAGCAACTACTCCCTCTTTC 59.811 47.826 0.00 0.00 0.00 2.62
637 892 3.704800 AAGCAACTACTCCCTCTTTCC 57.295 47.619 0.00 0.00 0.00 3.13
638 893 2.621070 AGCAACTACTCCCTCTTTCCA 58.379 47.619 0.00 0.00 0.00 3.53
639 894 3.185455 AGCAACTACTCCCTCTTTCCAT 58.815 45.455 0.00 0.00 0.00 3.41
640 895 3.198853 AGCAACTACTCCCTCTTTCCATC 59.801 47.826 0.00 0.00 0.00 3.51
641 896 3.198853 GCAACTACTCCCTCTTTCCATCT 59.801 47.826 0.00 0.00 0.00 2.90
642 897 4.406003 GCAACTACTCCCTCTTTCCATCTA 59.594 45.833 0.00 0.00 0.00 1.98
643 898 5.071115 GCAACTACTCCCTCTTTCCATCTAT 59.929 44.000 0.00 0.00 0.00 1.98
644 899 6.267928 GCAACTACTCCCTCTTTCCATCTATA 59.732 42.308 0.00 0.00 0.00 1.31
645 900 7.038658 GCAACTACTCCCTCTTTCCATCTATAT 60.039 40.741 0.00 0.00 0.00 0.86
646 901 9.535170 CAACTACTCCCTCTTTCCATCTATATA 57.465 37.037 0.00 0.00 0.00 0.86
647 902 9.762381 AACTACTCCCTCTTTCCATCTATATAG 57.238 37.037 3.10 3.10 0.00 1.31
648 903 8.340757 ACTACTCCCTCTTTCCATCTATATAGG 58.659 40.741 9.89 0.00 0.00 2.57
649 904 6.507568 ACTCCCTCTTTCCATCTATATAGGG 58.492 44.000 9.89 4.49 43.23 3.53
650 905 6.048563 ACTCCCTCTTTCCATCTATATAGGGT 59.951 42.308 9.89 0.00 42.58 4.34
651 906 6.503944 TCCCTCTTTCCATCTATATAGGGTC 58.496 44.000 9.89 0.00 42.58 4.46
652 907 6.280649 TCCCTCTTTCCATCTATATAGGGTCT 59.719 42.308 9.89 0.00 42.58 3.85
653 908 6.382570 CCCTCTTTCCATCTATATAGGGTCTG 59.617 46.154 9.89 3.45 38.09 3.51
654 909 7.185565 CCTCTTTCCATCTATATAGGGTCTGA 58.814 42.308 9.89 4.14 0.00 3.27
655 910 7.843760 CCTCTTTCCATCTATATAGGGTCTGAT 59.156 40.741 9.89 0.00 0.00 2.90
656 911 9.928618 CTCTTTCCATCTATATAGGGTCTGATA 57.071 37.037 9.89 0.00 0.00 2.15
657 912 9.702253 TCTTTCCATCTATATAGGGTCTGATAC 57.298 37.037 9.89 0.00 0.00 2.24
658 913 8.521170 TTTCCATCTATATAGGGTCTGATACG 57.479 38.462 9.89 0.00 0.00 3.06
659 914 7.209340 TCCATCTATATAGGGTCTGATACGT 57.791 40.000 9.89 0.00 0.00 3.57
660 915 7.640313 TCCATCTATATAGGGTCTGATACGTT 58.360 38.462 9.89 0.00 0.00 3.99
661 916 8.114102 TCCATCTATATAGGGTCTGATACGTTT 58.886 37.037 9.89 0.00 0.00 3.60
662 917 8.750298 CCATCTATATAGGGTCTGATACGTTTT 58.250 37.037 9.89 0.00 0.00 2.43
665 920 8.509690 TCTATATAGGGTCTGATACGTTTTTCG 58.490 37.037 9.89 0.00 46.00 3.46
666 921 3.947910 AGGGTCTGATACGTTTTTCGA 57.052 42.857 0.00 0.00 42.86 3.71
667 922 3.846360 AGGGTCTGATACGTTTTTCGAG 58.154 45.455 0.00 0.00 42.86 4.04
668 923 2.928116 GGGTCTGATACGTTTTTCGAGG 59.072 50.000 0.00 0.00 42.86 4.63
669 924 2.347755 GGTCTGATACGTTTTTCGAGGC 59.652 50.000 0.00 0.00 42.86 4.70
670 925 3.251571 GTCTGATACGTTTTTCGAGGCT 58.748 45.455 0.00 0.00 42.86 4.58
671 926 4.418392 GTCTGATACGTTTTTCGAGGCTA 58.582 43.478 0.00 0.00 42.86 3.93
672 927 4.860907 GTCTGATACGTTTTTCGAGGCTAA 59.139 41.667 0.00 0.00 42.86 3.09
673 928 4.860907 TCTGATACGTTTTTCGAGGCTAAC 59.139 41.667 0.00 0.00 42.86 2.34
674 929 4.813027 TGATACGTTTTTCGAGGCTAACT 58.187 39.130 0.00 0.00 42.86 2.24
675 930 5.232463 TGATACGTTTTTCGAGGCTAACTT 58.768 37.500 0.00 0.00 42.86 2.66
676 931 5.697633 TGATACGTTTTTCGAGGCTAACTTT 59.302 36.000 0.00 0.00 42.86 2.66
677 932 4.205323 ACGTTTTTCGAGGCTAACTTTG 57.795 40.909 0.00 0.00 42.86 2.77
678 933 3.872771 ACGTTTTTCGAGGCTAACTTTGA 59.127 39.130 0.00 0.00 42.86 2.69
679 934 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
680 935 4.534168 GTTTTTCGAGGCTAACTTTGACC 58.466 43.478 0.00 0.00 0.00 4.02
681 936 3.478857 TTTCGAGGCTAACTTTGACCA 57.521 42.857 0.00 0.00 0.00 4.02
682 937 3.478857 TTCGAGGCTAACTTTGACCAA 57.521 42.857 0.00 0.00 0.00 3.67
683 938 3.478857 TCGAGGCTAACTTTGACCAAA 57.521 42.857 0.00 0.00 0.00 3.28
684 939 4.015872 TCGAGGCTAACTTTGACCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
685 940 5.155278 TCGAGGCTAACTTTGACCAAATA 57.845 39.130 0.00 0.00 0.00 1.40
686 941 4.933400 TCGAGGCTAACTTTGACCAAATAC 59.067 41.667 0.00 0.00 0.00 1.89
687 942 4.935808 CGAGGCTAACTTTGACCAAATACT 59.064 41.667 0.00 0.00 0.00 2.12
688 943 6.071221 TCGAGGCTAACTTTGACCAAATACTA 60.071 38.462 0.00 0.00 0.00 1.82
689 944 6.255887 CGAGGCTAACTTTGACCAAATACTAG 59.744 42.308 0.00 0.00 0.00 2.57
690 945 6.415573 AGGCTAACTTTGACCAAATACTAGG 58.584 40.000 0.00 0.00 0.00 3.02
691 946 5.589050 GGCTAACTTTGACCAAATACTAGGG 59.411 44.000 0.00 0.00 0.00 3.53
692 947 5.066117 GCTAACTTTGACCAAATACTAGGGC 59.934 44.000 0.00 0.00 0.00 5.19
693 948 4.650972 ACTTTGACCAAATACTAGGGCA 57.349 40.909 0.00 0.00 42.42 5.36
709 964 9.784531 ATACTAGGGCAATAATATATGACATGC 57.215 33.333 0.00 2.30 0.00 4.06
710 965 7.632861 ACTAGGGCAATAATATATGACATGCA 58.367 34.615 10.44 0.00 34.14 3.96
711 966 8.108999 ACTAGGGCAATAATATATGACATGCAA 58.891 33.333 10.44 0.00 34.14 4.08
712 967 7.161773 AGGGCAATAATATATGACATGCAAC 57.838 36.000 10.44 4.68 34.14 4.17
713 968 6.950041 AGGGCAATAATATATGACATGCAACT 59.050 34.615 10.44 6.31 34.14 3.16
714 969 7.452501 AGGGCAATAATATATGACATGCAACTT 59.547 33.333 10.44 0.00 34.14 2.66
715 970 8.739039 GGGCAATAATATATGACATGCAACTTA 58.261 33.333 10.44 0.00 34.14 2.24
716 971 9.559958 GGCAATAATATATGACATGCAACTTAC 57.440 33.333 10.44 0.00 34.14 2.34
723 978 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
724 979 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
725 980 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
726 981 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
727 982 3.143807 TGCAACTTACACAAAGCACAC 57.856 42.857 0.00 0.00 38.93 3.82
728 983 2.752354 TGCAACTTACACAAAGCACACT 59.248 40.909 0.00 0.00 38.93 3.55
729 984 3.108144 GCAACTTACACAAAGCACACTG 58.892 45.455 0.00 0.00 38.93 3.66
730 985 3.427503 GCAACTTACACAAAGCACACTGT 60.428 43.478 0.00 0.00 38.93 3.55
731 986 4.732784 CAACTTACACAAAGCACACTGTT 58.267 39.130 0.00 0.00 38.93 3.16
732 987 5.675071 GCAACTTACACAAAGCACACTGTTA 60.675 40.000 0.00 0.00 38.93 2.41
733 988 6.318628 CAACTTACACAAAGCACACTGTTAA 58.681 36.000 0.00 0.00 38.93 2.01
734 989 6.503589 ACTTACACAAAGCACACTGTTAAA 57.496 33.333 0.00 0.00 38.93 1.52
735 990 7.095695 ACTTACACAAAGCACACTGTTAAAT 57.904 32.000 0.00 0.00 38.93 1.40
736 991 7.543756 ACTTACACAAAGCACACTGTTAAATT 58.456 30.769 0.00 0.00 38.93 1.82
737 992 7.700656 ACTTACACAAAGCACACTGTTAAATTC 59.299 33.333 0.00 0.00 38.93 2.17
738 993 5.034152 ACACAAAGCACACTGTTAAATTCG 58.966 37.500 0.00 0.00 0.00 3.34
739 994 5.034152 CACAAAGCACACTGTTAAATTCGT 58.966 37.500 0.00 0.00 0.00 3.85
740 995 5.034152 ACAAAGCACACTGTTAAATTCGTG 58.966 37.500 0.00 0.00 0.00 4.35
741 996 4.893424 AAGCACACTGTTAAATTCGTGT 57.107 36.364 0.00 0.00 40.91 4.49
742 997 5.994887 AAGCACACTGTTAAATTCGTGTA 57.005 34.783 0.00 0.00 38.44 2.90
743 998 6.554334 AAGCACACTGTTAAATTCGTGTAT 57.446 33.333 0.00 0.00 38.44 2.29
744 999 5.927030 AGCACACTGTTAAATTCGTGTATG 58.073 37.500 0.00 0.00 38.44 2.39
745 1000 5.699001 AGCACACTGTTAAATTCGTGTATGA 59.301 36.000 0.00 0.00 38.44 2.15
746 1001 6.203915 AGCACACTGTTAAATTCGTGTATGAA 59.796 34.615 0.00 0.00 38.44 2.57
747 1002 6.853872 GCACACTGTTAAATTCGTGTATGAAA 59.146 34.615 0.00 0.00 38.44 2.69
748 1003 7.059488 GCACACTGTTAAATTCGTGTATGAAAG 59.941 37.037 0.00 0.00 38.44 2.62
749 1004 7.533900 CACACTGTTAAATTCGTGTATGAAAGG 59.466 37.037 0.00 0.00 38.44 3.11
750 1005 7.442969 ACACTGTTAAATTCGTGTATGAAAGGA 59.557 33.333 0.00 0.00 38.69 3.36
751 1006 7.957484 CACTGTTAAATTCGTGTATGAAAGGAG 59.043 37.037 0.00 0.00 0.00 3.69
752 1007 6.837992 TGTTAAATTCGTGTATGAAAGGAGC 58.162 36.000 0.00 0.00 0.00 4.70
753 1008 6.653320 TGTTAAATTCGTGTATGAAAGGAGCT 59.347 34.615 0.00 0.00 0.00 4.09
754 1009 7.174253 TGTTAAATTCGTGTATGAAAGGAGCTT 59.826 33.333 0.00 0.00 0.00 3.74
755 1010 6.575162 AAATTCGTGTATGAAAGGAGCTTT 57.425 33.333 0.00 0.00 36.29 3.51
756 1011 6.575162 AATTCGTGTATGAAAGGAGCTTTT 57.425 33.333 0.00 0.00 33.49 2.27
757 1012 7.681939 AATTCGTGTATGAAAGGAGCTTTTA 57.318 32.000 0.00 0.00 33.49 1.52
758 1013 7.681939 ATTCGTGTATGAAAGGAGCTTTTAA 57.318 32.000 0.00 0.00 33.49 1.52
759 1014 7.681939 TTCGTGTATGAAAGGAGCTTTTAAT 57.318 32.000 0.00 0.00 33.49 1.40
760 1015 7.072177 TCGTGTATGAAAGGAGCTTTTAATG 57.928 36.000 0.00 0.00 33.49 1.90
761 1016 6.876789 TCGTGTATGAAAGGAGCTTTTAATGA 59.123 34.615 0.00 0.00 33.49 2.57
762 1017 7.552687 TCGTGTATGAAAGGAGCTTTTAATGAT 59.447 33.333 0.00 0.00 33.49 2.45
763 1018 8.826710 CGTGTATGAAAGGAGCTTTTAATGATA 58.173 33.333 0.00 0.00 33.49 2.15
785 1040 9.179552 TGATATAATTTTTACATTGCGCATGTC 57.820 29.630 22.74 8.26 43.17 3.06
786 1041 9.179552 GATATAATTTTTACATTGCGCATGTCA 57.820 29.630 22.74 13.39 43.17 3.58
787 1042 9.695526 ATATAATTTTTACATTGCGCATGTCAT 57.304 25.926 22.74 7.53 43.17 3.06
788 1043 5.705813 ATTTTTACATTGCGCATGTCATG 57.294 34.783 22.74 19.72 43.17 3.07
789 1044 3.846423 TTTACATTGCGCATGTCATGT 57.154 38.095 24.24 24.24 43.17 3.21
790 1045 4.954092 TTTACATTGCGCATGTCATGTA 57.046 36.364 22.49 22.49 43.17 2.29
791 1046 2.830772 ACATTGCGCATGTCATGTAC 57.169 45.000 20.79 7.36 43.17 2.90
792 1047 2.358957 ACATTGCGCATGTCATGTACT 58.641 42.857 20.79 0.34 43.17 2.73
793 1048 3.530535 ACATTGCGCATGTCATGTACTA 58.469 40.909 20.79 0.00 43.17 1.82
794 1049 4.129380 ACATTGCGCATGTCATGTACTAT 58.871 39.130 20.79 0.43 43.17 2.12
795 1050 4.576053 ACATTGCGCATGTCATGTACTATT 59.424 37.500 20.79 0.00 43.17 1.73
796 1051 5.757808 ACATTGCGCATGTCATGTACTATTA 59.242 36.000 20.79 0.00 43.17 0.98
797 1052 6.259829 ACATTGCGCATGTCATGTACTATTAA 59.740 34.615 20.79 0.00 43.17 1.40
798 1053 6.859420 TTGCGCATGTCATGTACTATTAAT 57.141 33.333 12.75 0.00 0.00 1.40
799 1054 6.466308 TGCGCATGTCATGTACTATTAATC 57.534 37.500 5.66 0.00 0.00 1.75
800 1055 6.223120 TGCGCATGTCATGTACTATTAATCT 58.777 36.000 5.66 0.00 0.00 2.40
801 1056 6.705825 TGCGCATGTCATGTACTATTAATCTT 59.294 34.615 5.66 0.00 0.00 2.40
802 1057 7.011773 GCGCATGTCATGTACTATTAATCTTG 58.988 38.462 14.26 0.00 0.00 3.02
803 1058 7.307396 GCGCATGTCATGTACTATTAATCTTGT 60.307 37.037 14.26 0.00 0.00 3.16
804 1059 8.217115 CGCATGTCATGTACTATTAATCTTGTC 58.783 37.037 14.26 0.00 0.00 3.18
805 1060 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
820 1075 7.687941 AATCTTGTCAATAATCAAAGACGGT 57.312 32.000 0.00 0.00 33.83 4.83
821 1076 6.721571 TCTTGTCAATAATCAAAGACGGTC 57.278 37.500 0.00 0.00 33.83 4.79
822 1077 6.464222 TCTTGTCAATAATCAAAGACGGTCT 58.536 36.000 4.45 4.45 33.83 3.85
823 1078 6.934645 TCTTGTCAATAATCAAAGACGGTCTT 59.065 34.615 17.38 17.38 38.59 3.01
824 1079 8.092068 TCTTGTCAATAATCAAAGACGGTCTTA 58.908 33.333 22.67 9.63 35.27 2.10
825 1080 8.610248 TTGTCAATAATCAAAGACGGTCTTAA 57.390 30.769 22.67 14.61 35.27 1.85
826 1081 8.610248 TGTCAATAATCAAAGACGGTCTTAAA 57.390 30.769 22.67 14.28 35.27 1.52
827 1082 9.058174 TGTCAATAATCAAAGACGGTCTTAAAA 57.942 29.630 22.67 11.98 35.27 1.52
828 1083 9.887406 GTCAATAATCAAAGACGGTCTTAAAAA 57.113 29.630 22.67 9.72 35.27 1.94
831 1086 8.911247 ATAATCAAAGACGGTCTTAAAAATGC 57.089 30.769 22.67 0.00 35.27 3.56
832 1087 5.759506 TCAAAGACGGTCTTAAAAATGCA 57.240 34.783 22.67 5.89 35.27 3.96
833 1088 6.325919 TCAAAGACGGTCTTAAAAATGCAT 57.674 33.333 22.67 0.00 35.27 3.96
834 1089 6.744112 TCAAAGACGGTCTTAAAAATGCATT 58.256 32.000 22.67 5.99 35.27 3.56
835 1090 7.877003 TCAAAGACGGTCTTAAAAATGCATTA 58.123 30.769 22.67 0.00 35.27 1.90
836 1091 8.519526 TCAAAGACGGTCTTAAAAATGCATTAT 58.480 29.630 22.67 7.61 35.27 1.28
837 1092 8.586273 CAAAGACGGTCTTAAAAATGCATTATG 58.414 33.333 22.67 9.40 35.27 1.90
838 1093 6.265577 AGACGGTCTTAAAAATGCATTATGC 58.734 36.000 13.39 10.65 45.29 3.14
839 1094 5.348164 ACGGTCTTAAAAATGCATTATGCC 58.652 37.500 13.39 7.53 44.23 4.40
840 1095 4.744631 CGGTCTTAAAAATGCATTATGCCC 59.255 41.667 13.39 5.92 44.23 5.36
841 1096 5.451798 CGGTCTTAAAAATGCATTATGCCCT 60.452 40.000 13.39 0.00 44.23 5.19
842 1097 6.238897 CGGTCTTAAAAATGCATTATGCCCTA 60.239 38.462 13.39 0.00 44.23 3.53
843 1098 7.523709 CGGTCTTAAAAATGCATTATGCCCTAT 60.524 37.037 13.39 0.00 44.23 2.57
844 1099 8.802267 GGTCTTAAAAATGCATTATGCCCTATA 58.198 33.333 13.39 0.00 44.23 1.31
851 1106 8.701908 AAATGCATTATGCCCTATATAGATGG 57.298 34.615 13.39 6.04 44.23 3.51
852 1107 7.637548 ATGCATTATGCCCTATATAGATGGA 57.362 36.000 15.06 7.31 44.23 3.41
853 1108 7.450323 TGCATTATGCCCTATATAGATGGAA 57.550 36.000 15.06 0.00 44.23 3.53
854 1109 7.512130 TGCATTATGCCCTATATAGATGGAAG 58.488 38.462 15.06 0.00 44.23 3.46
855 1110 6.939163 GCATTATGCCCTATATAGATGGAAGG 59.061 42.308 11.53 3.94 37.42 3.46
856 1111 7.202130 GCATTATGCCCTATATAGATGGAAGGA 60.202 40.741 11.53 0.00 37.42 3.36
857 1112 7.921041 TTATGCCCTATATAGATGGAAGGAG 57.079 40.000 11.53 0.00 0.00 3.69
858 1113 4.624913 TGCCCTATATAGATGGAAGGAGG 58.375 47.826 11.53 1.87 0.00 4.30
859 1114 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
860 1115 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
861 1116 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
866 1121 1.052617 GATGGAAGGAGGGAGTAGGC 58.947 60.000 0.00 0.00 0.00 3.93
875 1130 0.541863 AGGGAGTAGGCCGAAATGTG 59.458 55.000 0.00 0.00 0.00 3.21
895 1150 0.388649 AACCAGTAGAGCGCACGAAG 60.389 55.000 11.47 0.00 0.00 3.79
924 1179 5.642063 CGGTAATGGCATTACGGAGATTATT 59.358 40.000 35.70 8.80 44.65 1.40
925 1180 6.814644 CGGTAATGGCATTACGGAGATTATTA 59.185 38.462 35.70 8.80 44.65 0.98
945 1502 1.882912 TATGATCATCGTGCTTGCCC 58.117 50.000 12.53 0.00 0.00 5.36
946 1503 0.182061 ATGATCATCGTGCTTGCCCT 59.818 50.000 1.18 0.00 0.00 5.19
965 1522 4.880120 GCCCTACTAGTTTTCGCCTATTTT 59.120 41.667 0.00 0.00 0.00 1.82
977 1534 2.030363 CGCCTATTTTGCACTGGTCAAA 60.030 45.455 0.00 0.00 0.00 2.69
978 1535 3.317150 GCCTATTTTGCACTGGTCAAAC 58.683 45.455 0.00 0.00 33.66 2.93
981 1538 5.600696 CCTATTTTGCACTGGTCAAACTTT 58.399 37.500 0.00 0.00 33.66 2.66
982 1539 6.048509 CCTATTTTGCACTGGTCAAACTTTT 58.951 36.000 0.00 0.00 33.66 2.27
983 1540 7.206687 CCTATTTTGCACTGGTCAAACTTTTA 58.793 34.615 0.00 0.00 33.66 1.52
1025 1582 2.184448 CGCAAATACCAAAAGATGCCG 58.816 47.619 0.00 0.00 0.00 5.69
1027 1584 2.165437 GCAAATACCAAAAGATGCCGGA 59.835 45.455 5.05 0.00 0.00 5.14
1044 1601 1.407258 CGGAGTGGCAAGGAAAAACAA 59.593 47.619 0.00 0.00 0.00 2.83
1066 1623 1.360551 CACGGATCGCCAGAGGTAG 59.639 63.158 0.00 0.00 0.00 3.18
1067 1624 1.076923 ACGGATCGCCAGAGGTAGT 60.077 57.895 0.00 0.00 0.00 2.73
1293 1854 4.092091 GCAGGTTCTTGTAAATCTCAGTCG 59.908 45.833 0.00 0.00 0.00 4.18
1321 1882 2.309528 ATCGAGCTGCATTTCCGTAA 57.690 45.000 1.02 0.00 0.00 3.18
1347 1908 3.402628 TCTTCTAGTTCCCTGTTGTGC 57.597 47.619 0.00 0.00 0.00 4.57
1360 1921 2.481568 CTGTTGTGCATGTAGTGGTCAG 59.518 50.000 0.00 0.00 0.00 3.51
1365 1926 1.270785 TGCATGTAGTGGTCAGGTGTG 60.271 52.381 0.00 0.00 0.00 3.82
1372 1933 2.050144 AGTGGTCAGGTGTGATCAAGT 58.950 47.619 0.00 0.00 45.67 3.16
1373 1934 2.146342 GTGGTCAGGTGTGATCAAGTG 58.854 52.381 0.00 0.00 45.67 3.16
1392 1973 2.736721 GTGCTGTCTGCTAATTCGTTCA 59.263 45.455 3.20 0.00 43.37 3.18
1393 1974 3.372206 GTGCTGTCTGCTAATTCGTTCAT 59.628 43.478 3.20 0.00 43.37 2.57
1394 1975 4.002982 TGCTGTCTGCTAATTCGTTCATT 58.997 39.130 3.20 0.00 43.37 2.57
1395 1976 4.093408 TGCTGTCTGCTAATTCGTTCATTC 59.907 41.667 3.20 0.00 43.37 2.67
1396 1977 4.093408 GCTGTCTGCTAATTCGTTCATTCA 59.907 41.667 0.00 0.00 38.95 2.57
1397 1978 5.726138 GCTGTCTGCTAATTCGTTCATTCAG 60.726 44.000 0.00 0.00 38.95 3.02
1398 1979 5.478407 TGTCTGCTAATTCGTTCATTCAGA 58.522 37.500 0.00 0.00 0.00 3.27
1399 1980 5.348724 TGTCTGCTAATTCGTTCATTCAGAC 59.651 40.000 10.93 10.93 45.42 3.51
1508 2095 4.651867 GCACATGATCTGCCCAGT 57.348 55.556 0.00 0.00 0.00 4.00
1509 2096 2.401967 GCACATGATCTGCCCAGTC 58.598 57.895 0.00 0.00 0.00 3.51
1510 2097 1.099879 GCACATGATCTGCCCAGTCC 61.100 60.000 0.00 0.00 0.00 3.85
1511 2098 0.465097 CACATGATCTGCCCAGTCCC 60.465 60.000 0.00 0.00 0.00 4.46
1512 2099 0.622738 ACATGATCTGCCCAGTCCCT 60.623 55.000 0.00 0.00 0.00 4.20
1513 2100 0.179026 CATGATCTGCCCAGTCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
1532 2119 0.915364 GGATCTGCCCACCTTCTTCT 59.085 55.000 0.00 0.00 0.00 2.85
1533 2120 1.134250 GGATCTGCCCACCTTCTTCTC 60.134 57.143 0.00 0.00 0.00 2.87
1541 2128 1.553417 CCACCTTCTTCTCCTCTGGGA 60.553 57.143 0.00 0.00 39.70 4.37
1600 2187 6.764877 GCAATCTGCTTTCATTTATGATGG 57.235 37.500 0.00 0.00 40.96 3.51
1604 2191 7.770366 ATCTGCTTTCATTTATGATGGCATA 57.230 32.000 0.00 11.32 40.77 3.14
1626 2213 4.450976 ACCAAAGAAATTGAAGCAAACCC 58.549 39.130 0.00 0.00 41.85 4.11
1633 2220 4.751767 AATTGAAGCAAACCCAAAGTCA 57.248 36.364 0.00 0.00 0.00 3.41
1651 2238 1.879380 TCACATTGCGGTTCTCCAAAG 59.121 47.619 0.00 0.00 0.00 2.77
1674 2261 0.384669 CCGTCTCTAGTTTAGGCCCG 59.615 60.000 0.00 0.00 0.00 6.13
1675 2262 0.248949 CGTCTCTAGTTTAGGCCCGC 60.249 60.000 0.00 0.00 0.00 6.13
1676 2263 0.104487 GTCTCTAGTTTAGGCCCGCC 59.896 60.000 0.00 0.00 0.00 6.13
1677 2264 1.047034 TCTCTAGTTTAGGCCCGCCC 61.047 60.000 0.00 0.00 36.58 6.13
1719 2306 5.428253 CCTCCGGTGATGAAATCTTCTTAA 58.572 41.667 4.76 0.00 45.81 1.85
1758 2346 7.721286 TTTTTGTTTTTCAGAACAAGCAGAA 57.279 28.000 3.77 0.00 46.60 3.02
1775 2363 7.717875 ACAAGCAGAACCTTAATGTTTGTAGTA 59.282 33.333 6.48 0.00 43.58 1.82
1776 2364 7.907214 AGCAGAACCTTAATGTTTGTAGTAG 57.093 36.000 0.00 0.00 0.00 2.57
1778 2366 7.937394 AGCAGAACCTTAATGTTTGTAGTAGTT 59.063 33.333 0.00 0.00 0.00 2.24
1779 2367 8.228464 GCAGAACCTTAATGTTTGTAGTAGTTC 58.772 37.037 0.00 0.00 0.00 3.01
1780 2368 8.718734 CAGAACCTTAATGTTTGTAGTAGTTCC 58.281 37.037 0.00 0.00 32.34 3.62
1781 2369 7.881751 AGAACCTTAATGTTTGTAGTAGTTCCC 59.118 37.037 0.00 0.00 32.34 3.97
1782 2370 7.081857 ACCTTAATGTTTGTAGTAGTTCCCA 57.918 36.000 0.00 0.00 0.00 4.37
1783 2371 7.519927 ACCTTAATGTTTGTAGTAGTTCCCAA 58.480 34.615 0.00 0.00 0.00 4.12
1784 2372 7.664318 ACCTTAATGTTTGTAGTAGTTCCCAAG 59.336 37.037 0.00 0.00 0.00 3.61
1785 2373 7.881232 CCTTAATGTTTGTAGTAGTTCCCAAGA 59.119 37.037 0.00 0.00 0.00 3.02
1823 2413 9.016438 GTTTTACTTATGGATACTTGGTTCCAA 57.984 33.333 4.17 4.17 44.83 3.53
1887 2795 2.536761 ATCGGTTCAAAACTCCGTGA 57.463 45.000 0.00 0.00 43.94 4.35
1900 2811 2.167693 ACTCCGTGATAGGATCGCAAAA 59.832 45.455 1.36 0.00 39.96 2.44
1901 2812 3.181465 ACTCCGTGATAGGATCGCAAAAT 60.181 43.478 1.36 0.00 39.96 1.82
1903 2814 2.349817 CCGTGATAGGATCGCAAAATGC 60.350 50.000 1.36 0.00 39.71 3.56
1919 2830 4.574599 AAATGCAGAGTTCTGAACCAAC 57.425 40.909 16.48 8.94 46.59 3.77
1940 2856 2.409975 TCGGGATCAAAACGAACAGAC 58.590 47.619 0.00 0.00 33.21 3.51
1941 2857 2.036733 TCGGGATCAAAACGAACAGACT 59.963 45.455 0.00 0.00 33.21 3.24
1942 2858 2.806244 CGGGATCAAAACGAACAGACTT 59.194 45.455 0.00 0.00 0.00 3.01
1943 2859 3.991773 CGGGATCAAAACGAACAGACTTA 59.008 43.478 0.00 0.00 0.00 2.24
1944 2860 4.449743 CGGGATCAAAACGAACAGACTTAA 59.550 41.667 0.00 0.00 0.00 1.85
1945 2861 5.389516 CGGGATCAAAACGAACAGACTTAAG 60.390 44.000 0.00 0.00 0.00 1.85
1947 2863 6.128526 GGGATCAAAACGAACAGACTTAAGAG 60.129 42.308 10.09 1.19 0.00 2.85
1948 2864 6.424207 GGATCAAAACGAACAGACTTAAGAGT 59.576 38.462 10.09 1.85 39.32 3.24
1951 2867 8.706492 TCAAAACGAACAGACTTAAGAGTTTA 57.294 30.769 10.09 0.00 35.88 2.01
1952 2868 8.814235 TCAAAACGAACAGACTTAAGAGTTTAG 58.186 33.333 10.09 10.77 35.88 1.85
1955 2871 6.445475 ACGAACAGACTTAAGAGTTTAGGTC 58.555 40.000 10.09 2.45 42.86 3.85
1964 2880 9.543783 GACTTAAGAGTTTAGGTCTGAAAGAAA 57.456 33.333 10.09 0.00 40.08 2.52
1965 2881 9.549078 ACTTAAGAGTTTAGGTCTGAAAGAAAG 57.451 33.333 10.09 0.00 37.56 2.62
2003 2920 0.805322 GCCATCTCTGCAGACACTCG 60.805 60.000 13.74 2.51 0.00 4.18
2007 2924 0.598562 TCTCTGCAGACACTCGGTTC 59.401 55.000 13.74 0.00 0.00 3.62
2020 2937 2.236146 ACTCGGTTCCTGTTATGCATGA 59.764 45.455 10.16 0.00 0.00 3.07
2021 2938 2.868583 CTCGGTTCCTGTTATGCATGAG 59.131 50.000 10.16 2.31 0.00 2.90
2022 2939 1.331756 CGGTTCCTGTTATGCATGAGC 59.668 52.381 10.16 0.00 42.57 4.26
2046 2963 0.674895 CAGTACACTGGAGCCCAAGC 60.675 60.000 1.21 0.00 40.20 4.01
2072 2989 4.351938 TCGACGACACGCCAAGGG 62.352 66.667 0.00 0.00 0.00 3.95
2079 2996 2.130073 GACACGCCAAGGGTTTCAGC 62.130 60.000 0.00 0.00 35.98 4.26
2087 3206 2.242043 CAAGGGTTTCAGCATCTTGGT 58.758 47.619 0.00 0.00 33.32 3.67
2095 3214 5.863935 GGTTTCAGCATCTTGGTTTATGAAC 59.136 40.000 0.00 0.00 34.96 3.18
2096 3215 6.446318 GTTTCAGCATCTTGGTTTATGAACA 58.554 36.000 2.50 0.00 37.51 3.18
2113 3232 5.906113 TGAACAGGATCAGAACTCTCTAC 57.094 43.478 0.00 0.00 0.00 2.59
2143 3262 3.743911 TCGCAAATCGTGTTGTAGAATGT 59.256 39.130 3.45 0.00 39.67 2.71
2161 3280 2.484889 TGTACAACATTGTAGCGTGCA 58.515 42.857 4.71 0.00 43.67 4.57
2162 3281 2.222213 TGTACAACATTGTAGCGTGCAC 59.778 45.455 6.82 6.82 43.67 4.57
2163 3282 1.593196 ACAACATTGTAGCGTGCACT 58.407 45.000 16.19 0.00 40.16 4.40
2176 3295 2.030946 GCGTGCACTATGAATCTCCAAC 59.969 50.000 16.19 0.00 0.00 3.77
2191 3316 9.166173 TGAATCTCCAACAAGTTTCAGTATATG 57.834 33.333 0.00 0.00 32.63 1.78
2262 3396 4.717629 TCCTTCAGCGGCGTCACG 62.718 66.667 9.37 0.00 0.00 4.35
2286 3420 4.883026 CTGCAGAAGCCATTGCAC 57.117 55.556 8.42 0.00 44.72 4.57
2288 3422 2.221906 CTGCAGAAGCCATTGCACCC 62.222 60.000 8.42 0.00 44.72 4.61
2289 3423 2.277591 GCAGAAGCCATTGCACCCA 61.278 57.895 0.00 0.00 41.13 4.51
2290 3424 1.818959 GCAGAAGCCATTGCACCCAA 61.819 55.000 0.00 0.00 41.13 4.12
2292 3426 1.080569 GAAGCCATTGCACCCAACG 60.081 57.895 0.00 0.00 41.13 4.10
2293 3427 1.523154 GAAGCCATTGCACCCAACGA 61.523 55.000 0.00 0.00 41.13 3.85
2294 3428 1.805428 AAGCCATTGCACCCAACGAC 61.805 55.000 0.00 0.00 41.13 4.34
2295 3429 2.961768 CCATTGCACCCAACGACC 59.038 61.111 0.00 0.00 32.95 4.79
2296 3430 1.900981 CCATTGCACCCAACGACCA 60.901 57.895 0.00 0.00 32.95 4.02
2297 3431 1.580942 CATTGCACCCAACGACCAG 59.419 57.895 0.00 0.00 32.95 4.00
2298 3432 1.150536 ATTGCACCCAACGACCAGT 59.849 52.632 0.00 0.00 32.95 4.00
2299 3433 0.467290 ATTGCACCCAACGACCAGTT 60.467 50.000 0.00 0.00 45.45 3.16
2300 3434 1.098712 TTGCACCCAACGACCAGTTC 61.099 55.000 0.00 0.00 42.02 3.01
2310 3444 4.143333 ACCAGTTCCCGGCGATCG 62.143 66.667 11.69 11.69 38.88 3.69
2448 3582 0.036388 TGGCCATCTTCACCTTCGAC 60.036 55.000 0.00 0.00 0.00 4.20
2686 3823 4.534103 AGTTCCTCAAGAAGTAGCCATCTT 59.466 41.667 0.00 0.00 36.32 2.40
2688 3825 4.096681 TCCTCAAGAAGTAGCCATCTTCA 58.903 43.478 13.10 0.00 42.35 3.02
2697 3834 2.953284 AGCCATCTTCATCCATCCAG 57.047 50.000 0.00 0.00 0.00 3.86
2721 3858 4.705023 TCCATCATCATCATCCATGAATGC 59.295 41.667 0.00 0.00 45.06 3.56
2735 3873 6.802608 TCCATGAATGCATCTTTGATTCTTC 58.197 36.000 0.00 0.00 30.68 2.87
2746 3884 8.603181 GCATCTTTGATTCTTCTTCTTCTACTC 58.397 37.037 0.00 0.00 0.00 2.59
2787 3930 5.201243 TCCTGACAGAAACTAGCTGCTATA 58.799 41.667 10.23 0.00 36.86 1.31
2815 3958 4.001652 CTGCATTGAGTTCAGTCATCACT 58.998 43.478 0.00 0.00 0.00 3.41
2842 3989 3.277715 TGTTGATTTGTGTGCTCTGTGA 58.722 40.909 0.00 0.00 0.00 3.58
2952 4103 8.425577 AACAATCCTCGTGTTTATATTCTGAG 57.574 34.615 0.00 0.00 35.70 3.35
2957 4108 6.549736 TCCTCGTGTTTATATTCTGAGGATGA 59.450 38.462 4.04 0.00 44.03 2.92
2958 4109 7.233553 TCCTCGTGTTTATATTCTGAGGATGAT 59.766 37.037 4.04 0.00 44.03 2.45
2959 4110 7.330454 CCTCGTGTTTATATTCTGAGGATGATG 59.670 40.741 0.00 0.00 43.26 3.07
2961 4112 6.128445 CGTGTTTATATTCTGAGGATGATGCC 60.128 42.308 0.00 0.00 0.00 4.40
2963 4114 7.392673 GTGTTTATATTCTGAGGATGATGCCAT 59.607 37.037 0.00 0.00 35.29 4.40
2964 4115 7.392393 TGTTTATATTCTGAGGATGATGCCATG 59.608 37.037 0.00 0.00 32.09 3.66
2965 4116 1.977056 TTCTGAGGATGATGCCATGC 58.023 50.000 0.00 0.00 40.88 4.06
2967 4118 0.179001 CTGAGGATGATGCCATGCCA 60.179 55.000 0.00 0.00 41.41 4.92
2969 4120 1.152610 AGGATGATGCCATGCCACC 60.153 57.895 0.00 0.00 41.41 4.61
2970 4121 1.152610 GGATGATGCCATGCCACCT 60.153 57.895 0.00 0.00 35.39 4.00
2974 4125 2.228545 TGATGCCATGCCACCTTTTA 57.771 45.000 0.00 0.00 0.00 1.52
2994 4161 9.691362 CCTTTTAAAACACTAATAACACATGCT 57.309 29.630 0.00 0.00 0.00 3.79
3026 4193 2.500098 TCATGTAGGTTGTAGAGTGCCC 59.500 50.000 0.00 0.00 0.00 5.36
3050 4217 2.743636 TACCTCTTTCTTGCAGACCG 57.256 50.000 0.00 0.00 0.00 4.79
3090 4257 1.478510 CTCCACCGAATACAGACTGCT 59.521 52.381 1.25 0.00 0.00 4.24
3096 4263 0.371645 GAATACAGACTGCTGCACGC 59.628 55.000 1.25 1.70 46.26 5.34
3117 4284 2.033448 TTGCGGCGGATGGAAAGT 59.967 55.556 9.78 0.00 0.00 2.66
3123 4290 1.499049 GGCGGATGGAAAGTATCGAC 58.501 55.000 0.00 0.00 0.00 4.20
3131 4298 4.911514 TGGAAAGTATCGACGATGATCA 57.088 40.909 20.42 0.00 0.00 2.92
3135 4302 2.490991 AGTATCGACGATGATCACGGA 58.509 47.619 20.42 9.53 34.93 4.69
3224 4405 8.098286 AGTTACAATATAACACTGTACAAGCCA 58.902 33.333 0.00 0.00 0.00 4.75
3235 4416 2.224523 TGTACAAGCCAAGGGTGAAGAG 60.225 50.000 0.00 0.00 0.00 2.85
3241 4422 2.025887 AGCCAAGGGTGAAGAGGTATTG 60.026 50.000 0.00 0.00 0.00 1.90
3249 4430 2.092375 GTGAAGAGGTATTGGAAGGGGG 60.092 54.545 0.00 0.00 0.00 5.40
3276 4457 6.071051 TGGTCATAGTGCTGTCAATAGTACAA 60.071 38.462 0.00 0.00 35.98 2.41
3302 4484 4.035612 TCAGTACACTAAGACAGCTCCT 57.964 45.455 0.00 0.00 0.00 3.69
3304 4486 4.218635 TCAGTACACTAAGACAGCTCCTTG 59.781 45.833 7.87 2.31 0.00 3.61
3313 4495 0.178921 ACAGCTCCTTGGACTCCAGA 60.179 55.000 0.00 0.00 33.81 3.86
3323 4505 1.827344 TGGACTCCAGAGCACTACATG 59.173 52.381 0.00 0.00 0.00 3.21
3329 4511 1.676916 CCAGAGCACTACATGGTGGTG 60.677 57.143 10.89 8.30 46.04 4.17
3333 4515 2.434185 ACTACATGGTGGTGCGCG 60.434 61.111 0.00 0.00 0.00 6.86
3380 4562 2.280797 TGTGTGTCCTTGAGCCGC 60.281 61.111 0.00 0.00 0.00 6.53
3416 4598 0.902984 AGTACCTGGGCATGTCGACA 60.903 55.000 22.48 22.48 0.00 4.35
3560 4742 0.323816 TCTGGATGAGCTCGGTGAGT 60.324 55.000 9.64 0.00 31.39 3.41
3563 4745 0.247736 GGATGAGCTCGGTGAGTTGT 59.752 55.000 9.64 0.00 31.39 3.32
3575 4757 3.315191 CGGTGAGTTGTTGGATGTTCTTT 59.685 43.478 0.00 0.00 0.00 2.52
3639 4821 7.199766 TGTGAGTGTGGAATGTTAATTTGAAC 58.800 34.615 0.00 0.00 0.00 3.18
3673 4855 0.382515 TGGAAACAAGAAAACCGCCG 59.617 50.000 0.00 0.00 37.44 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 1.219124 CCTGGTGGTGTCGATGGAG 59.781 63.158 0.00 0.00 0.00 3.86
94 95 2.954684 GCCTGGTGGTGTCGATGGA 61.955 63.158 0.00 0.00 35.27 3.41
118 119 2.427095 GCTCAAGAAGTGGTTGGTTGTT 59.573 45.455 0.00 0.00 0.00 2.83
121 122 2.736670 AGCTCAAGAAGTGGTTGGTT 57.263 45.000 0.00 0.00 0.00 3.67
161 162 1.659211 GCAAACTCGTCGCGTCAAATT 60.659 47.619 5.77 0.00 0.00 1.82
162 163 0.110823 GCAAACTCGTCGCGTCAAAT 60.111 50.000 5.77 0.00 0.00 2.32
218 219 0.909610 AAGGTGCCAGAGGATCCGAA 60.910 55.000 5.98 0.00 33.66 4.30
229 230 2.029964 GAACCGACGAAGGTGCCA 59.970 61.111 7.28 0.00 45.21 4.92
244 245 1.285280 AGAACATGTCGGGGATGGAA 58.715 50.000 0.00 0.00 0.00 3.53
251 252 1.290203 CCATCGAAGAACATGTCGGG 58.710 55.000 0.00 0.00 43.58 5.14
258 259 2.083774 GCATGGAACCATCGAAGAACA 58.916 47.619 3.10 0.00 43.58 3.18
264 265 1.518352 CGACGCATGGAACCATCGA 60.518 57.895 22.06 0.00 33.90 3.59
268 269 2.358125 CACCGACGCATGGAACCA 60.358 61.111 0.00 0.00 0.00 3.67
309 310 1.539827 CGTCCAATTCCCGCTCTTTTT 59.460 47.619 0.00 0.00 0.00 1.94
352 353 0.811281 GCCAAAATTCCCCACTCTCG 59.189 55.000 0.00 0.00 0.00 4.04
374 376 3.958018 TGTACCATCCCGCACTATTTTT 58.042 40.909 0.00 0.00 0.00 1.94
464 467 1.172180 CGTGGAGGGCTTTGCTGAAA 61.172 55.000 0.00 0.00 0.00 2.69
466 469 2.032528 CGTGGAGGGCTTTGCTGA 59.967 61.111 0.00 0.00 0.00 4.26
468 471 0.755327 AAAACGTGGAGGGCTTTGCT 60.755 50.000 0.00 0.00 0.00 3.91
522 776 7.718334 AAAATAACCCCTCTTATCTGGTTTG 57.282 36.000 0.00 0.00 41.22 2.93
540 794 8.948631 AAGAGAGATCGTCTGCAATAAAATAA 57.051 30.769 1.78 0.00 34.71 1.40
541 795 8.948631 AAAGAGAGATCGTCTGCAATAAAATA 57.051 30.769 1.78 0.00 34.71 1.40
594 849 7.973388 GCTTTGCACCTATTTTAATATGTGACA 59.027 33.333 16.90 12.57 38.80 3.58
598 853 8.531146 AGTTGCTTTGCACCTATTTTAATATGT 58.469 29.630 0.00 0.00 38.71 2.29
615 870 3.753797 GGAAAGAGGGAGTAGTTGCTTTG 59.246 47.826 0.00 0.00 0.00 2.77
618 873 2.621070 TGGAAAGAGGGAGTAGTTGCT 58.379 47.619 0.00 0.00 0.00 3.91
624 879 7.244239 ACCCTATATAGATGGAAAGAGGGAGTA 59.756 40.741 11.53 0.00 44.48 2.59
625 880 6.048563 ACCCTATATAGATGGAAAGAGGGAGT 59.951 42.308 11.53 0.00 44.48 3.85
626 881 6.507568 ACCCTATATAGATGGAAAGAGGGAG 58.492 44.000 11.53 0.00 44.48 4.30
627 882 6.280649 AGACCCTATATAGATGGAAAGAGGGA 59.719 42.308 11.53 0.00 44.48 4.20
628 883 6.382570 CAGACCCTATATAGATGGAAAGAGGG 59.617 46.154 11.53 4.91 46.66 4.30
629 884 7.185565 TCAGACCCTATATAGATGGAAAGAGG 58.814 42.308 11.53 3.20 0.00 3.69
630 885 8.837099 ATCAGACCCTATATAGATGGAAAGAG 57.163 38.462 11.53 0.00 0.00 2.85
631 886 9.702253 GTATCAGACCCTATATAGATGGAAAGA 57.298 37.037 11.53 6.09 0.00 2.52
632 887 8.625651 CGTATCAGACCCTATATAGATGGAAAG 58.374 40.741 11.53 1.54 0.00 2.62
633 888 8.114102 ACGTATCAGACCCTATATAGATGGAAA 58.886 37.037 11.53 0.00 0.00 3.13
634 889 7.640313 ACGTATCAGACCCTATATAGATGGAA 58.360 38.462 11.53 0.00 0.00 3.53
635 890 7.209340 ACGTATCAGACCCTATATAGATGGA 57.791 40.000 11.53 2.37 0.00 3.41
636 891 7.883391 AACGTATCAGACCCTATATAGATGG 57.117 40.000 11.53 7.34 0.00 3.51
639 894 8.509690 CGAAAAACGTATCAGACCCTATATAGA 58.490 37.037 11.53 0.00 37.22 1.98
640 895 8.509690 TCGAAAAACGTATCAGACCCTATATAG 58.490 37.037 2.46 2.46 43.13 1.31
641 896 8.394971 TCGAAAAACGTATCAGACCCTATATA 57.605 34.615 0.00 0.00 43.13 0.86
642 897 7.281040 TCGAAAAACGTATCAGACCCTATAT 57.719 36.000 0.00 0.00 43.13 0.86
643 898 6.238842 CCTCGAAAAACGTATCAGACCCTATA 60.239 42.308 0.00 0.00 43.13 1.31
644 899 5.451520 CCTCGAAAAACGTATCAGACCCTAT 60.452 44.000 0.00 0.00 43.13 2.57
645 900 4.142315 CCTCGAAAAACGTATCAGACCCTA 60.142 45.833 0.00 0.00 43.13 3.53
646 901 3.368116 CCTCGAAAAACGTATCAGACCCT 60.368 47.826 0.00 0.00 43.13 4.34
647 902 2.928116 CCTCGAAAAACGTATCAGACCC 59.072 50.000 0.00 0.00 43.13 4.46
648 903 2.347755 GCCTCGAAAAACGTATCAGACC 59.652 50.000 0.00 0.00 43.13 3.85
649 904 3.251571 AGCCTCGAAAAACGTATCAGAC 58.748 45.455 0.00 0.00 43.13 3.51
650 905 3.587797 AGCCTCGAAAAACGTATCAGA 57.412 42.857 0.00 0.00 43.13 3.27
651 906 4.863131 AGTTAGCCTCGAAAAACGTATCAG 59.137 41.667 0.00 0.00 43.13 2.90
652 907 4.813027 AGTTAGCCTCGAAAAACGTATCA 58.187 39.130 0.00 0.00 43.13 2.15
653 908 5.774878 AAGTTAGCCTCGAAAAACGTATC 57.225 39.130 0.00 0.00 43.13 2.24
654 909 5.697633 TCAAAGTTAGCCTCGAAAAACGTAT 59.302 36.000 0.00 0.00 43.13 3.06
655 910 5.049167 TCAAAGTTAGCCTCGAAAAACGTA 58.951 37.500 0.00 0.00 43.13 3.57
656 911 3.872771 TCAAAGTTAGCCTCGAAAAACGT 59.127 39.130 0.00 0.00 43.13 3.99
657 912 4.209112 GTCAAAGTTAGCCTCGAAAAACG 58.791 43.478 0.00 0.00 44.09 3.60
658 913 4.035909 TGGTCAAAGTTAGCCTCGAAAAAC 59.964 41.667 0.00 0.00 0.00 2.43
659 914 4.200874 TGGTCAAAGTTAGCCTCGAAAAA 58.799 39.130 0.00 0.00 0.00 1.94
660 915 3.811083 TGGTCAAAGTTAGCCTCGAAAA 58.189 40.909 0.00 0.00 0.00 2.29
661 916 3.478857 TGGTCAAAGTTAGCCTCGAAA 57.521 42.857 0.00 0.00 0.00 3.46
662 917 3.478857 TTGGTCAAAGTTAGCCTCGAA 57.521 42.857 0.00 0.00 0.00 3.71
663 918 3.478857 TTTGGTCAAAGTTAGCCTCGA 57.521 42.857 0.00 0.00 0.00 4.04
664 919 4.935808 AGTATTTGGTCAAAGTTAGCCTCG 59.064 41.667 2.55 0.00 33.32 4.63
665 920 6.539103 CCTAGTATTTGGTCAAAGTTAGCCTC 59.461 42.308 2.55 0.00 33.32 4.70
666 921 6.415573 CCTAGTATTTGGTCAAAGTTAGCCT 58.584 40.000 2.55 0.00 33.32 4.58
667 922 5.589050 CCCTAGTATTTGGTCAAAGTTAGCC 59.411 44.000 2.55 0.00 33.32 3.93
668 923 5.066117 GCCCTAGTATTTGGTCAAAGTTAGC 59.934 44.000 2.55 0.00 33.32 3.09
669 924 6.177610 TGCCCTAGTATTTGGTCAAAGTTAG 58.822 40.000 2.55 4.32 33.32 2.34
670 925 6.129414 TGCCCTAGTATTTGGTCAAAGTTA 57.871 37.500 2.55 0.00 33.32 2.24
671 926 4.993028 TGCCCTAGTATTTGGTCAAAGTT 58.007 39.130 2.55 0.00 33.32 2.66
672 927 4.650972 TGCCCTAGTATTTGGTCAAAGT 57.349 40.909 2.55 0.00 33.32 2.66
673 928 7.639113 TTATTGCCCTAGTATTTGGTCAAAG 57.361 36.000 2.55 0.00 33.32 2.77
674 929 9.875708 ATATTATTGCCCTAGTATTTGGTCAAA 57.124 29.630 0.00 0.00 34.46 2.69
683 938 9.784531 GCATGTCATATATTATTGCCCTAGTAT 57.215 33.333 0.00 0.00 0.00 2.12
684 939 8.767436 TGCATGTCATATATTATTGCCCTAGTA 58.233 33.333 0.00 0.00 0.00 1.82
685 940 7.632861 TGCATGTCATATATTATTGCCCTAGT 58.367 34.615 0.00 0.00 0.00 2.57
686 941 8.400947 GTTGCATGTCATATATTATTGCCCTAG 58.599 37.037 0.00 0.00 0.00 3.02
687 942 8.108999 AGTTGCATGTCATATATTATTGCCCTA 58.891 33.333 0.00 0.00 0.00 3.53
688 943 6.950041 AGTTGCATGTCATATATTATTGCCCT 59.050 34.615 0.00 0.00 0.00 5.19
689 944 7.161773 AGTTGCATGTCATATATTATTGCCC 57.838 36.000 0.00 0.00 0.00 5.36
690 945 9.559958 GTAAGTTGCATGTCATATATTATTGCC 57.440 33.333 0.00 0.00 0.00 4.52
697 952 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
698 953 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
699 954 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
700 955 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
701 956 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
702 957 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
703 958 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
704 959 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
705 960 3.486841 GTGTGCTTTGTGTAAGTTGCATG 59.513 43.478 0.00 0.00 36.19 4.06
706 961 3.381272 AGTGTGCTTTGTGTAAGTTGCAT 59.619 39.130 0.00 0.00 36.19 3.96
707 962 2.752354 AGTGTGCTTTGTGTAAGTTGCA 59.248 40.909 0.00 0.00 36.19 4.08
708 963 3.108144 CAGTGTGCTTTGTGTAAGTTGC 58.892 45.455 0.00 0.00 36.19 4.17
709 964 4.355543 ACAGTGTGCTTTGTGTAAGTTG 57.644 40.909 0.00 0.00 36.19 3.16
710 965 6.503589 TTAACAGTGTGCTTTGTGTAAGTT 57.496 33.333 0.00 0.00 36.19 2.66
711 966 6.503589 TTTAACAGTGTGCTTTGTGTAAGT 57.496 33.333 0.00 0.00 36.19 2.24
712 967 7.097047 CGAATTTAACAGTGTGCTTTGTGTAAG 60.097 37.037 0.00 0.00 36.90 2.34
713 968 6.689241 CGAATTTAACAGTGTGCTTTGTGTAA 59.311 34.615 0.00 0.00 0.00 2.41
714 969 6.183360 ACGAATTTAACAGTGTGCTTTGTGTA 60.183 34.615 0.00 0.00 0.00 2.90
715 970 5.034152 CGAATTTAACAGTGTGCTTTGTGT 58.966 37.500 0.00 0.00 0.00 3.72
716 971 5.034152 ACGAATTTAACAGTGTGCTTTGTG 58.966 37.500 0.00 0.00 0.00 3.33
717 972 5.034152 CACGAATTTAACAGTGTGCTTTGT 58.966 37.500 0.00 0.00 0.00 2.83
718 973 5.034152 ACACGAATTTAACAGTGTGCTTTG 58.966 37.500 0.00 0.00 44.90 2.77
719 974 5.243426 ACACGAATTTAACAGTGTGCTTT 57.757 34.783 0.00 0.00 44.90 3.51
720 975 4.893424 ACACGAATTTAACAGTGTGCTT 57.107 36.364 0.00 0.00 44.90 3.91
721 976 5.699001 TCATACACGAATTTAACAGTGTGCT 59.301 36.000 9.93 0.00 45.92 4.40
722 977 5.922546 TCATACACGAATTTAACAGTGTGC 58.077 37.500 9.93 0.00 45.92 4.57
723 978 7.533900 CCTTTCATACACGAATTTAACAGTGTG 59.466 37.037 9.93 5.51 45.92 3.82
725 980 7.802738 TCCTTTCATACACGAATTTAACAGTG 58.197 34.615 0.00 0.00 40.17 3.66
726 981 7.360946 GCTCCTTTCATACACGAATTTAACAGT 60.361 37.037 0.00 0.00 0.00 3.55
727 982 6.961554 GCTCCTTTCATACACGAATTTAACAG 59.038 38.462 0.00 0.00 0.00 3.16
728 983 6.653320 AGCTCCTTTCATACACGAATTTAACA 59.347 34.615 0.00 0.00 0.00 2.41
729 984 7.073342 AGCTCCTTTCATACACGAATTTAAC 57.927 36.000 0.00 0.00 0.00 2.01
730 985 7.681939 AAGCTCCTTTCATACACGAATTTAA 57.318 32.000 0.00 0.00 0.00 1.52
731 986 7.681939 AAAGCTCCTTTCATACACGAATTTA 57.318 32.000 0.00 0.00 0.00 1.40
732 987 6.575162 AAAGCTCCTTTCATACACGAATTT 57.425 33.333 0.00 0.00 0.00 1.82
733 988 6.575162 AAAAGCTCCTTTCATACACGAATT 57.425 33.333 0.00 0.00 31.99 2.17
734 989 7.681939 TTAAAAGCTCCTTTCATACACGAAT 57.318 32.000 0.00 0.00 31.99 3.34
735 990 7.389330 TCATTAAAAGCTCCTTTCATACACGAA 59.611 33.333 0.00 0.00 31.99 3.85
736 991 6.876789 TCATTAAAAGCTCCTTTCATACACGA 59.123 34.615 0.00 0.00 31.99 4.35
737 992 7.072177 TCATTAAAAGCTCCTTTCATACACG 57.928 36.000 0.00 0.00 31.99 4.49
773 1028 4.737353 ATAGTACATGACATGCGCAATG 57.263 40.909 17.11 16.59 42.48 2.82
774 1029 6.859420 TTAATAGTACATGACATGCGCAAT 57.141 33.333 17.11 5.47 0.00 3.56
775 1030 6.705825 AGATTAATAGTACATGACATGCGCAA 59.294 34.615 17.11 0.00 0.00 4.85
776 1031 6.223120 AGATTAATAGTACATGACATGCGCA 58.777 36.000 14.96 14.96 0.00 6.09
777 1032 6.712241 AGATTAATAGTACATGACATGCGC 57.288 37.500 15.49 0.00 0.00 6.09
778 1033 8.076714 ACAAGATTAATAGTACATGACATGCG 57.923 34.615 15.49 0.00 0.00 4.73
779 1034 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
794 1049 9.226606 ACCGTCTTTGATTATTGACAAGATTAA 57.773 29.630 0.00 0.00 0.00 1.40
795 1050 8.786826 ACCGTCTTTGATTATTGACAAGATTA 57.213 30.769 0.00 0.00 0.00 1.75
796 1051 7.607991 AGACCGTCTTTGATTATTGACAAGATT 59.392 33.333 0.00 0.00 0.00 2.40
797 1052 7.106239 AGACCGTCTTTGATTATTGACAAGAT 58.894 34.615 0.00 0.00 0.00 2.40
798 1053 6.464222 AGACCGTCTTTGATTATTGACAAGA 58.536 36.000 0.00 0.00 0.00 3.02
799 1054 6.727824 AGACCGTCTTTGATTATTGACAAG 57.272 37.500 0.00 0.00 0.00 3.16
800 1055 8.610248 TTAAGACCGTCTTTGATTATTGACAA 57.390 30.769 18.73 0.42 37.89 3.18
801 1056 8.610248 TTTAAGACCGTCTTTGATTATTGACA 57.390 30.769 18.73 0.00 37.89 3.58
802 1057 9.887406 TTTTTAAGACCGTCTTTGATTATTGAC 57.113 29.630 18.73 0.00 37.89 3.18
805 1060 9.353999 GCATTTTTAAGACCGTCTTTGATTATT 57.646 29.630 18.73 0.00 37.89 1.40
806 1061 8.519526 TGCATTTTTAAGACCGTCTTTGATTAT 58.480 29.630 18.73 4.84 37.89 1.28
807 1062 7.877003 TGCATTTTTAAGACCGTCTTTGATTA 58.123 30.769 18.73 0.00 37.89 1.75
808 1063 6.744112 TGCATTTTTAAGACCGTCTTTGATT 58.256 32.000 18.73 0.00 37.89 2.57
809 1064 6.325919 TGCATTTTTAAGACCGTCTTTGAT 57.674 33.333 18.73 5.97 37.89 2.57
810 1065 5.759506 TGCATTTTTAAGACCGTCTTTGA 57.240 34.783 18.73 6.08 37.89 2.69
811 1066 8.586273 CATAATGCATTTTTAAGACCGTCTTTG 58.414 33.333 18.75 11.50 37.89 2.77
812 1067 7.275560 GCATAATGCATTTTTAAGACCGTCTTT 59.724 33.333 18.75 4.10 44.26 2.52
813 1068 6.751888 GCATAATGCATTTTTAAGACCGTCTT 59.248 34.615 18.75 17.70 44.26 3.01
814 1069 6.265577 GCATAATGCATTTTTAAGACCGTCT 58.734 36.000 18.75 0.00 44.26 4.18
815 1070 6.496524 GCATAATGCATTTTTAAGACCGTC 57.503 37.500 18.75 0.00 44.26 4.79
830 1085 6.939163 CCTTCCATCTATATAGGGCATAATGC 59.061 42.308 9.89 0.00 44.08 3.56
831 1086 8.267620 TCCTTCCATCTATATAGGGCATAATG 57.732 38.462 9.89 5.15 0.00 1.90
832 1087 7.515514 CCTCCTTCCATCTATATAGGGCATAAT 59.484 40.741 9.89 0.00 0.00 1.28
833 1088 6.846505 CCTCCTTCCATCTATATAGGGCATAA 59.153 42.308 9.89 0.00 0.00 1.90
834 1089 6.385443 CCTCCTTCCATCTATATAGGGCATA 58.615 44.000 9.89 0.00 0.00 3.14
835 1090 5.222870 CCTCCTTCCATCTATATAGGGCAT 58.777 45.833 9.89 0.00 0.00 4.40
836 1091 4.575045 CCCTCCTTCCATCTATATAGGGCA 60.575 50.000 9.89 0.00 36.30 5.36
837 1092 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
838 1093 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
839 1094 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
840 1095 7.294584 CCTACTCCCTCCTTCCATCTATATAG 58.705 46.154 3.10 3.10 0.00 1.31
841 1096 6.354917 GCCTACTCCCTCCTTCCATCTATATA 60.355 46.154 0.00 0.00 0.00 0.86
842 1097 5.578927 GCCTACTCCCTCCTTCCATCTATAT 60.579 48.000 0.00 0.00 0.00 0.86
843 1098 4.264442 GCCTACTCCCTCCTTCCATCTATA 60.264 50.000 0.00 0.00 0.00 1.31
844 1099 3.503227 GCCTACTCCCTCCTTCCATCTAT 60.503 52.174 0.00 0.00 0.00 1.98
845 1100 2.158295 GCCTACTCCCTCCTTCCATCTA 60.158 54.545 0.00 0.00 0.00 1.98
846 1101 1.413808 GCCTACTCCCTCCTTCCATCT 60.414 57.143 0.00 0.00 0.00 2.90
847 1102 1.052617 GCCTACTCCCTCCTTCCATC 58.947 60.000 0.00 0.00 0.00 3.51
848 1103 0.400670 GGCCTACTCCCTCCTTCCAT 60.401 60.000 0.00 0.00 0.00 3.41
849 1104 1.003051 GGCCTACTCCCTCCTTCCA 59.997 63.158 0.00 0.00 0.00 3.53
850 1105 2.134933 CGGCCTACTCCCTCCTTCC 61.135 68.421 0.00 0.00 0.00 3.46
851 1106 0.686769 TTCGGCCTACTCCCTCCTTC 60.687 60.000 0.00 0.00 0.00 3.46
852 1107 0.252558 TTTCGGCCTACTCCCTCCTT 60.253 55.000 0.00 0.00 0.00 3.36
853 1108 0.031010 ATTTCGGCCTACTCCCTCCT 60.031 55.000 0.00 0.00 0.00 3.69
854 1109 0.106894 CATTTCGGCCTACTCCCTCC 59.893 60.000 0.00 0.00 0.00 4.30
855 1110 0.831307 ACATTTCGGCCTACTCCCTC 59.169 55.000 0.00 0.00 0.00 4.30
856 1111 0.541863 CACATTTCGGCCTACTCCCT 59.458 55.000 0.00 0.00 0.00 4.20
857 1112 0.539986 TCACATTTCGGCCTACTCCC 59.460 55.000 0.00 0.00 0.00 4.30
858 1113 2.007608 GTTCACATTTCGGCCTACTCC 58.992 52.381 0.00 0.00 0.00 3.85
859 1114 2.007608 GGTTCACATTTCGGCCTACTC 58.992 52.381 0.00 0.00 0.00 2.59
860 1115 1.349688 TGGTTCACATTTCGGCCTACT 59.650 47.619 0.00 0.00 0.00 2.57
861 1116 1.737793 CTGGTTCACATTTCGGCCTAC 59.262 52.381 0.00 0.00 0.00 3.18
866 1121 2.673368 GCTCTACTGGTTCACATTTCGG 59.327 50.000 0.00 0.00 0.00 4.30
875 1130 0.388134 TTCGTGCGCTCTACTGGTTC 60.388 55.000 9.73 0.00 0.00 3.62
895 1150 3.374678 TCCGTAATGCCATTACCGTTTTC 59.625 43.478 19.23 0.00 41.55 2.29
924 1179 3.261643 AGGGCAAGCACGATGATCATATA 59.738 43.478 8.54 0.00 0.00 0.86
925 1180 2.039480 AGGGCAAGCACGATGATCATAT 59.961 45.455 8.54 0.00 0.00 1.78
945 1502 6.092259 AGTGCAAAATAGGCGAAAACTAGTAG 59.908 38.462 0.00 0.00 0.00 2.57
946 1503 5.935789 AGTGCAAAATAGGCGAAAACTAGTA 59.064 36.000 0.00 0.00 0.00 1.82
1025 1582 3.069443 TGATTGTTTTTCCTTGCCACTCC 59.931 43.478 0.00 0.00 0.00 3.85
1027 1584 3.450457 TGTGATTGTTTTTCCTTGCCACT 59.550 39.130 0.00 0.00 0.00 4.00
1044 1601 1.439228 CTCTGGCGATCCGTGTGAT 59.561 57.895 0.00 0.00 36.01 3.06
1066 1623 0.813184 CAACCACAGCCATCCATCAC 59.187 55.000 0.00 0.00 0.00 3.06
1067 1624 0.323633 CCAACCACAGCCATCCATCA 60.324 55.000 0.00 0.00 0.00 3.07
1284 1845 1.342819 GATTAGCTGGGCGACTGAGAT 59.657 52.381 0.00 0.00 0.00 2.75
1321 1882 5.104485 ACAACAGGGAACTAGAAGAACAAGT 60.104 40.000 0.00 0.00 40.21 3.16
1347 1908 3.055891 TGATCACACCTGACCACTACATG 60.056 47.826 0.00 0.00 0.00 3.21
1360 1921 1.802960 CAGACAGCACTTGATCACACC 59.197 52.381 0.00 0.00 0.00 4.16
1373 1934 4.093408 TGAATGAACGAATTAGCAGACAGC 59.907 41.667 0.00 0.00 46.19 4.40
1392 1973 7.319646 GTGTATCTGTTCTCTGAAGTCTGAAT 58.680 38.462 0.00 0.00 0.00 2.57
1393 1974 6.568653 CGTGTATCTGTTCTCTGAAGTCTGAA 60.569 42.308 0.00 0.00 0.00 3.02
1394 1975 5.106515 CGTGTATCTGTTCTCTGAAGTCTGA 60.107 44.000 0.00 0.00 0.00 3.27
1395 1976 5.092105 CGTGTATCTGTTCTCTGAAGTCTG 58.908 45.833 0.00 0.00 0.00 3.51
1396 1977 4.156922 CCGTGTATCTGTTCTCTGAAGTCT 59.843 45.833 0.00 0.00 0.00 3.24
1397 1978 4.082679 ACCGTGTATCTGTTCTCTGAAGTC 60.083 45.833 0.00 0.00 0.00 3.01
1398 1979 3.827302 ACCGTGTATCTGTTCTCTGAAGT 59.173 43.478 0.00 0.00 0.00 3.01
1399 1980 4.169508 CACCGTGTATCTGTTCTCTGAAG 58.830 47.826 0.00 0.00 0.00 3.02
1469 2056 4.082523 GCACCTAGCAGCCACCGA 62.083 66.667 0.00 0.00 44.79 4.69
1506 2093 1.997874 GTGGGCAGATCCAGGGACT 60.998 63.158 0.00 0.00 43.88 3.85
1507 2094 2.592308 GTGGGCAGATCCAGGGAC 59.408 66.667 0.00 0.00 37.50 4.46
1508 2095 2.692368 GGTGGGCAGATCCAGGGA 60.692 66.667 0.00 0.00 37.50 4.20
1509 2096 2.276309 GAAGGTGGGCAGATCCAGGG 62.276 65.000 0.00 0.00 37.50 4.45
1510 2097 1.225704 GAAGGTGGGCAGATCCAGG 59.774 63.158 0.00 0.00 37.50 4.45
1511 2098 0.622665 AAGAAGGTGGGCAGATCCAG 59.377 55.000 0.00 0.00 37.50 3.86
1512 2099 0.620556 GAAGAAGGTGGGCAGATCCA 59.379 55.000 0.00 0.00 36.21 3.41
1513 2100 0.915364 AGAAGAAGGTGGGCAGATCC 59.085 55.000 0.00 0.00 0.00 3.36
1532 2119 2.200373 ATCCTGCCCTTCCCAGAGGA 62.200 60.000 0.00 0.00 41.88 3.71
1533 2120 1.695597 ATCCTGCCCTTCCCAGAGG 60.696 63.158 0.00 0.00 36.52 3.69
1541 2128 1.668826 TCCAAGTACATCCTGCCCTT 58.331 50.000 0.00 0.00 0.00 3.95
1589 2176 9.550406 AATTTCTTTGGTATGCCATCATAAATG 57.450 29.630 2.33 0.00 45.56 2.32
1594 2181 6.795144 TCAATTTCTTTGGTATGCCATCAT 57.205 33.333 2.33 0.00 45.56 2.45
1600 2187 6.347644 GGTTTGCTTCAATTTCTTTGGTATGC 60.348 38.462 0.00 0.00 35.92 3.14
1604 2191 4.080638 TGGGTTTGCTTCAATTTCTTTGGT 60.081 37.500 0.00 0.00 35.92 3.67
1626 2213 2.350772 GGAGAACCGCAATGTGACTTTG 60.351 50.000 6.82 6.82 0.00 2.77
1633 2220 1.880027 GACTTTGGAGAACCGCAATGT 59.120 47.619 0.00 0.00 39.42 2.71
1651 2238 1.533547 GCCTAAACTAGAGACGGCGAC 60.534 57.143 16.62 7.87 0.00 5.19
1747 2335 6.273071 ACAAACATTAAGGTTCTGCTTGTTC 58.727 36.000 5.89 0.00 27.80 3.18
1750 2338 6.970484 ACTACAAACATTAAGGTTCTGCTTG 58.030 36.000 5.89 3.22 0.00 4.01
1758 2346 7.081857 TGGGAACTACTACAAACATTAAGGT 57.918 36.000 0.00 0.00 0.00 3.50
1802 2392 9.354673 CATAATTGGAACCAAGTATCCATAAGT 57.645 33.333 19.20 0.24 44.83 2.24
1845 2722 2.154462 CGATTCTCACAACCTTGCCTT 58.846 47.619 0.00 0.00 0.00 4.35
1881 2789 2.971660 TTTTGCGATCCTATCACGGA 57.028 45.000 0.00 0.00 37.50 4.69
1900 2811 3.406764 GAGTTGGTTCAGAACTCTGCAT 58.593 45.455 13.13 0.00 44.02 3.96
1901 2812 2.803133 CGAGTTGGTTCAGAACTCTGCA 60.803 50.000 13.13 0.00 44.83 4.41
1903 2814 2.408050 CCGAGTTGGTTCAGAACTCTG 58.592 52.381 13.13 0.00 44.83 3.35
1919 2830 2.412089 GTCTGTTCGTTTTGATCCCGAG 59.588 50.000 0.00 0.00 31.54 4.63
1922 2833 5.699458 TCTTAAGTCTGTTCGTTTTGATCCC 59.301 40.000 1.63 0.00 0.00 3.85
1940 2856 9.765795 TCTTTCTTTCAGACCTAAACTCTTAAG 57.234 33.333 0.00 0.00 0.00 1.85
1942 2858 9.765795 CTTCTTTCTTTCAGACCTAAACTCTTA 57.234 33.333 0.00 0.00 0.00 2.10
1943 2859 8.487028 TCTTCTTTCTTTCAGACCTAAACTCTT 58.513 33.333 0.00 0.00 0.00 2.85
1944 2860 8.024145 TCTTCTTTCTTTCAGACCTAAACTCT 57.976 34.615 0.00 0.00 0.00 3.24
1945 2861 8.664211 TTCTTCTTTCTTTCAGACCTAAACTC 57.336 34.615 0.00 0.00 0.00 3.01
1983 2899 0.248565 GAGTGTCTGCAGAGATGGCA 59.751 55.000 18.89 8.39 39.32 4.92
1985 2901 0.179116 CCGAGTGTCTGCAGAGATGG 60.179 60.000 18.89 15.22 0.00 3.51
1991 2908 0.668706 CAGGAACCGAGTGTCTGCAG 60.669 60.000 7.63 7.63 0.00 4.41
2003 2920 2.368439 TGCTCATGCATAACAGGAACC 58.632 47.619 0.00 0.00 45.31 3.62
2020 2937 2.093447 GGCTCCAGTGTACTGTAATGCT 60.093 50.000 10.80 0.00 42.27 3.79
2021 2938 2.280628 GGCTCCAGTGTACTGTAATGC 58.719 52.381 10.80 8.60 42.27 3.56
2022 2939 2.236146 TGGGCTCCAGTGTACTGTAATG 59.764 50.000 10.80 0.00 42.27 1.90
2023 2940 2.546899 TGGGCTCCAGTGTACTGTAAT 58.453 47.619 10.80 0.00 42.27 1.89
2024 2941 2.018355 TGGGCTCCAGTGTACTGTAA 57.982 50.000 10.80 0.00 42.27 2.41
2025 2942 1.899814 CTTGGGCTCCAGTGTACTGTA 59.100 52.381 10.80 0.00 42.27 2.74
2040 2957 0.737715 GTCGACTAGCACAGCTTGGG 60.738 60.000 8.70 0.00 40.44 4.12
2046 2963 0.789753 CGTGTCGTCGACTAGCACAG 60.790 60.000 24.75 16.22 33.15 3.66
2072 2989 6.446318 TGTTCATAAACCAAGATGCTGAAAC 58.554 36.000 0.00 0.00 34.28 2.78
2079 2996 6.825213 TCTGATCCTGTTCATAAACCAAGATG 59.175 38.462 0.00 0.00 34.28 2.90
2087 3206 7.487822 AGAGAGTTCTGATCCTGTTCATAAA 57.512 36.000 0.00 0.00 30.72 1.40
2095 3214 6.708502 TCTTATCGTAGAGAGTTCTGATCCTG 59.291 42.308 0.00 0.00 43.63 3.86
2096 3215 6.833041 TCTTATCGTAGAGAGTTCTGATCCT 58.167 40.000 0.00 0.00 43.63 3.24
2143 3262 2.761559 AGTGCACGCTACAATGTTGTA 58.238 42.857 12.01 5.57 42.35 2.41
2161 3280 7.227156 ACTGAAACTTGTTGGAGATTCATAGT 58.773 34.615 0.00 0.00 37.66 2.12
2162 3281 7.678947 ACTGAAACTTGTTGGAGATTCATAG 57.321 36.000 0.00 0.00 37.66 2.23
2176 3295 6.426633 TGGTGTCACACATATACTGAAACTTG 59.573 38.462 10.85 0.00 35.86 3.16
2191 3316 4.764823 TGAAAATAGGGAATGGTGTCACAC 59.235 41.667 0.00 0.00 0.00 3.82
2270 3404 2.277591 GGGTGCAATGGCTTCTGCA 61.278 57.895 0.00 4.90 46.01 4.41
2271 3405 1.818959 TTGGGTGCAATGGCTTCTGC 61.819 55.000 0.00 0.01 41.91 4.26
2273 3407 1.526575 CGTTGGGTGCAATGGCTTCT 61.527 55.000 0.00 0.00 41.91 2.85
2275 3409 1.530419 TCGTTGGGTGCAATGGCTT 60.530 52.632 0.00 0.00 41.91 4.35
2276 3410 2.115052 TCGTTGGGTGCAATGGCT 59.885 55.556 0.00 0.00 41.91 4.75
2277 3411 2.258286 GTCGTTGGGTGCAATGGC 59.742 61.111 0.00 0.00 41.68 4.40
2279 3413 1.172180 ACTGGTCGTTGGGTGCAATG 61.172 55.000 0.00 0.00 0.00 2.82
2280 3414 0.467290 AACTGGTCGTTGGGTGCAAT 60.467 50.000 0.00 0.00 33.72 3.56
2281 3415 1.077357 AACTGGTCGTTGGGTGCAA 60.077 52.632 0.00 0.00 33.72 4.08
2282 3416 1.525077 GAACTGGTCGTTGGGTGCA 60.525 57.895 0.00 0.00 35.56 4.57
2285 3419 2.833957 GGGAACTGGTCGTTGGGT 59.166 61.111 0.00 0.00 35.56 4.51
2286 3420 2.358247 CGGGAACTGGTCGTTGGG 60.358 66.667 0.00 0.00 35.56 4.12
2295 3429 2.582498 GACGATCGCCGGGAACTG 60.582 66.667 16.60 0.00 43.93 3.16
2296 3430 4.189188 CGACGATCGCCGGGAACT 62.189 66.667 16.47 0.00 43.93 3.01
2297 3431 4.487412 ACGACGATCGCCGGGAAC 62.487 66.667 26.94 4.32 45.12 3.62
2298 3432 4.183686 GACGACGATCGCCGGGAA 62.184 66.667 26.94 0.00 45.12 3.97
2310 3444 4.430765 ATCGCCACCACCGACGAC 62.431 66.667 0.00 0.00 37.56 4.34
2427 3561 1.361668 CGAAGGTGAAGATGGCCACG 61.362 60.000 8.16 0.00 34.30 4.94
2448 3582 4.351938 TCGAACACCGACGGCTGG 62.352 66.667 15.39 6.52 43.23 4.85
2686 3823 3.320129 TGATGATGGACTGGATGGATGA 58.680 45.455 0.00 0.00 0.00 2.92
2688 3825 3.914435 TGATGATGATGGACTGGATGGAT 59.086 43.478 0.00 0.00 0.00 3.41
2697 3834 5.393135 GCATTCATGGATGATGATGATGGAC 60.393 44.000 18.71 0.00 40.92 4.02
2721 3858 9.650539 TGAGTAGAAGAAGAAGAATCAAAGATG 57.349 33.333 0.00 0.00 0.00 2.90
2735 3873 9.403110 CCATGAAACAAAAATGAGTAGAAGAAG 57.597 33.333 0.00 0.00 0.00 2.85
2746 3884 6.930164 TGTCAGGAATCCATGAAACAAAAATG 59.070 34.615 0.61 0.00 0.00 2.32
2759 3898 3.840666 AGCTAGTTTCTGTCAGGAATCCA 59.159 43.478 0.61 0.00 0.00 3.41
2787 3930 5.922053 TGACTGAACTCAATGCAGCTATAT 58.078 37.500 0.00 0.00 33.03 0.86
2815 3958 3.016031 AGCACACAAATCAACAGTCACA 58.984 40.909 0.00 0.00 0.00 3.58
2842 3989 8.267036 CATGCTTAATGAACAAGGTACGCAGT 62.267 42.308 0.00 0.00 41.42 4.40
2924 4073 8.331022 CAGAATATAAACACGAGGATTGTTCAG 58.669 37.037 0.00 0.00 36.13 3.02
2952 4103 0.757935 AAGGTGGCATGGCATCATCC 60.758 55.000 31.59 23.68 0.00 3.51
2957 4108 3.072184 TGTTTTAAAAGGTGGCATGGCAT 59.928 39.130 26.07 11.43 0.00 4.40
2958 4109 2.435805 TGTTTTAAAAGGTGGCATGGCA 59.564 40.909 19.43 19.43 0.00 4.92
2959 4110 2.805671 GTGTTTTAAAAGGTGGCATGGC 59.194 45.455 13.29 13.29 0.00 4.40
2961 4112 8.921670 GTTATTAGTGTTTTAAAAGGTGGCATG 58.078 33.333 0.00 0.00 0.00 4.06
2963 4114 7.921745 GTGTTATTAGTGTTTTAAAAGGTGGCA 59.078 33.333 0.00 0.00 0.00 4.92
2964 4115 7.921745 TGTGTTATTAGTGTTTTAAAAGGTGGC 59.078 33.333 0.00 0.00 0.00 5.01
2965 4116 9.974980 ATGTGTTATTAGTGTTTTAAAAGGTGG 57.025 29.630 0.00 0.00 0.00 4.61
2967 4118 9.471084 GCATGTGTTATTAGTGTTTTAAAAGGT 57.529 29.630 0.00 0.00 0.00 3.50
2974 4125 6.983307 TGCAAAGCATGTGTTATTAGTGTTTT 59.017 30.769 0.00 0.00 31.71 2.43
3026 4193 3.067106 TCTGCAAGAAAGAGGTAAAGCG 58.933 45.455 0.00 0.00 42.31 4.68
3050 4217 4.164294 GAGCAATTTCTCTGTGATGTTGC 58.836 43.478 15.64 15.64 41.54 4.17
3052 4219 4.217118 GTGGAGCAATTTCTCTGTGATGTT 59.783 41.667 5.08 0.00 33.70 2.71
3096 4263 1.932011 TTTCCATCCGCCGCAACATG 61.932 55.000 0.00 0.00 0.00 3.21
3103 4270 0.031585 TCGATACTTTCCATCCGCCG 59.968 55.000 0.00 0.00 0.00 6.46
3117 4284 2.225727 CCTTCCGTGATCATCGTCGATA 59.774 50.000 7.56 0.00 0.00 2.92
3123 4290 1.337260 GGATCCCTTCCGTGATCATCG 60.337 57.143 0.00 4.68 39.30 3.84
3135 4302 9.713684 TTGAAATTTTACTCATATGGATCCCTT 57.286 29.630 9.90 0.00 0.00 3.95
3157 4324 4.568380 CCCACCTTCCTCATTGAGATTGAA 60.568 45.833 15.36 9.02 0.00 2.69
3224 4405 3.267031 CCTTCCAATACCTCTTCACCCTT 59.733 47.826 0.00 0.00 0.00 3.95
3249 4430 2.472695 TTGACAGCACTATGACCACC 57.527 50.000 0.00 0.00 0.00 4.61
3276 4457 4.524714 AGCTGTCTTAGTGTACTGATGTGT 59.475 41.667 0.00 0.00 0.00 3.72
3302 4484 2.009681 TGTAGTGCTCTGGAGTCCAA 57.990 50.000 14.17 3.70 30.80 3.53
3304 4486 1.137872 CCATGTAGTGCTCTGGAGTCC 59.862 57.143 0.73 0.73 0.00 3.85
3333 4515 5.237815 TGATATATGAAAGGCACCATCGTC 58.762 41.667 0.00 0.00 0.00 4.20
3343 4525 7.500227 ACACACACCTGAATGATATATGAAAGG 59.500 37.037 0.00 0.00 0.00 3.11
3346 4528 6.992123 GGACACACACCTGAATGATATATGAA 59.008 38.462 0.00 0.00 0.00 2.57
3380 4562 4.997395 AGGTACTTTGCATCACAGTACAAG 59.003 41.667 18.92 7.57 44.55 3.16
3560 4742 3.243367 CGCAGGAAAAGAACATCCAACAA 60.243 43.478 0.00 0.00 38.23 2.83
3563 4745 1.269448 GCGCAGGAAAAGAACATCCAA 59.731 47.619 0.30 0.00 38.23 3.53
3575 4757 2.434336 ACAGATAATACTGGCGCAGGAA 59.566 45.455 10.83 0.00 41.59 3.36
3639 4821 0.897863 TTCCATCCCTTTTGTGCGGG 60.898 55.000 0.00 0.00 42.05 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.