Multiple sequence alignment - TraesCS4A01G355000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G355000 chr4A 100.000 7046 0 0 1 7046 629366668 629359623 0.000000e+00 13012.0
1 TraesCS4A01G355000 chr4A 91.818 110 1 2 6903 7005 691126902 691127010 5.700000e-31 147.0
2 TraesCS4A01G355000 chr5D 91.875 6917 299 114 51 6823 539216818 539223615 0.000000e+00 9417.0
3 TraesCS4A01G355000 chr5D 79.196 721 61 43 6031 6727 2530201 2529546 1.090000e-112 418.0
4 TraesCS4A01G355000 chr5D 83.539 486 22 23 6026 6510 558059468 558059040 1.100000e-107 401.0
5 TraesCS4A01G355000 chr5D 92.063 126 10 0 1328 1453 337305489 337305364 2.020000e-40 178.0
6 TraesCS4A01G355000 chr5D 93.617 47 3 0 2337 2383 539219197 539219243 3.530000e-08 71.3
7 TraesCS4A01G355000 chr5B 91.278 6948 313 125 42 6823 680917430 680924250 0.000000e+00 9202.0
8 TraesCS4A01G355000 chr5B 80.380 790 70 39 6026 6809 501484602 501483892 8.100000e-144 521.0
9 TraesCS4A01G355000 chr5B 92.063 126 10 0 1328 1453 395925673 395925548 2.020000e-40 178.0
10 TraesCS4A01G355000 chr5B 98.795 83 1 0 6924 7006 688104309 688104227 1.580000e-31 148.0
11 TraesCS4A01G355000 chr5B 96.364 55 2 0 2332 2386 680919820 680919874 2.710000e-14 91.6
12 TraesCS4A01G355000 chr3B 80.076 793 65 40 6026 6809 361841208 361841916 2.930000e-138 503.0
13 TraesCS4A01G355000 chr3B 80.216 647 46 42 6026 6665 573316230 573315659 1.830000e-110 411.0
14 TraesCS4A01G355000 chr6B 78.086 794 75 42 6026 6807 33235403 33234697 1.830000e-110 411.0
15 TraesCS4A01G355000 chr6B 87.500 120 7 4 6903 7014 101726788 101726907 1.590000e-26 132.0
16 TraesCS4A01G355000 chr6B 86.486 111 15 0 1855 1965 393598479 393598369 9.600000e-24 122.0
17 TraesCS4A01G355000 chr6A 76.101 477 107 6 5464 5935 47902467 47902941 7.060000e-60 243.0
18 TraesCS4A01G355000 chr5A 92.857 126 9 0 1328 1453 438475656 438475531 4.340000e-42 183.0
19 TraesCS4A01G355000 chr5A 98.780 82 1 0 6924 7005 531614602 531614683 5.700000e-31 147.0
20 TraesCS4A01G355000 chr2A 98.810 84 1 0 6924 7007 637201872 637201955 4.400000e-32 150.0
21 TraesCS4A01G355000 chr1A 92.593 108 1 1 6906 7006 558592183 558592076 1.580000e-31 148.0
22 TraesCS4A01G355000 chr1A 98.780 82 1 0 6924 7005 384329680 384329761 5.700000e-31 147.0
23 TraesCS4A01G355000 chrUn 98.780 82 1 0 6924 7005 8125658 8125739 5.700000e-31 147.0
24 TraesCS4A01G355000 chr2B 97.647 85 2 0 6924 7008 577442158 577442074 5.700000e-31 147.0
25 TraesCS4A01G355000 chr2D 83.036 112 17 2 1855 1965 618091928 618092038 4.500000e-17 100.0
26 TraesCS4A01G355000 chr2D 82.569 109 17 2 1858 1965 486315583 486315476 2.090000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G355000 chr4A 629359623 629366668 7045 True 13012 13012 100.000 1 7046 1 chr4A.!!$R1 7045
1 TraesCS4A01G355000 chr5D 539216818 539223615 6797 False 9417 9417 91.875 51 6823 1 chr5D.!!$F1 6772
2 TraesCS4A01G355000 chr5D 2529546 2530201 655 True 418 418 79.196 6031 6727 1 chr5D.!!$R1 696
3 TraesCS4A01G355000 chr5B 680917430 680924250 6820 False 9202 9202 91.278 42 6823 1 chr5B.!!$F1 6781
4 TraesCS4A01G355000 chr5B 501483892 501484602 710 True 521 521 80.380 6026 6809 1 chr5B.!!$R2 783
5 TraesCS4A01G355000 chr3B 361841208 361841916 708 False 503 503 80.076 6026 6809 1 chr3B.!!$F1 783
6 TraesCS4A01G355000 chr3B 573315659 573316230 571 True 411 411 80.216 6026 6665 1 chr3B.!!$R1 639
7 TraesCS4A01G355000 chr6B 33234697 33235403 706 True 411 411 78.086 6026 6807 1 chr6B.!!$R1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.243907 CGTCACCGTCCTTCATCAGT 59.756 55.000 0.00 0.0 0.00 3.41 F
154 158 0.249405 TTCCCAAGCAAAGCAAAGCG 60.249 50.000 0.00 0.0 35.48 4.68 F
1848 2033 0.042361 GATGCTCAATTGCTCGCTCG 60.042 55.000 0.00 0.0 0.00 5.03 F
2040 2225 2.423538 GGGATACTGATGGTTGTTGTGC 59.576 50.000 0.00 0.0 0.00 4.57 F
3827 4018 2.032178 GCTGCCTCGATTGGTTTATGTC 59.968 50.000 0.00 0.0 0.00 3.06 F
4598 4789 1.446792 CAGCTGCAGGTACCACTCG 60.447 63.158 19.71 0.0 0.00 4.18 F
4781 4972 1.347707 ACGCTTCTTGAGAATGGTGGA 59.652 47.619 0.00 0.0 33.01 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1328 0.106918 AGAAACGGCAACCCAACAGA 60.107 50.000 0.00 0.0 0.00 3.41 R
1850 2035 0.167470 ATGTCGTCGACCTACACACG 59.833 55.000 22.05 1.9 0.00 4.49 R
2727 2918 1.236628 GCTGCCTAGCTTCATCCATG 58.763 55.000 0.00 0.0 46.57 3.66 R
3977 4168 1.414919 ACACGGACCTGTAAAAGAGCA 59.585 47.619 0.00 0.0 0.00 4.26 R
4670 4861 0.320771 GAGTTTCAGCTCCTGCCGAA 60.321 55.000 0.00 0.0 40.80 4.30 R
5913 6111 0.033228 CCCACAGGAGCGAGATGATC 59.967 60.000 0.00 0.0 33.47 2.92 R
6716 6982 0.184451 AGCTATGGCATGGTCCCTTG 59.816 55.000 10.98 0.0 41.70 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.036026 CGTCACCGTCCTTCATCAG 57.964 57.895 0.00 0.00 0.00 2.90
19 20 0.243907 CGTCACCGTCCTTCATCAGT 59.756 55.000 0.00 0.00 0.00 3.41
20 21 1.336887 CGTCACCGTCCTTCATCAGTT 60.337 52.381 0.00 0.00 0.00 3.16
21 22 2.767505 GTCACCGTCCTTCATCAGTTT 58.232 47.619 0.00 0.00 0.00 2.66
22 23 2.737252 GTCACCGTCCTTCATCAGTTTC 59.263 50.000 0.00 0.00 0.00 2.78
23 24 1.726791 CACCGTCCTTCATCAGTTTCG 59.273 52.381 0.00 0.00 0.00 3.46
24 25 1.343465 ACCGTCCTTCATCAGTTTCGT 59.657 47.619 0.00 0.00 0.00 3.85
25 26 1.993370 CCGTCCTTCATCAGTTTCGTC 59.007 52.381 0.00 0.00 0.00 4.20
26 27 1.993370 CGTCCTTCATCAGTTTCGTCC 59.007 52.381 0.00 0.00 0.00 4.79
27 28 2.609491 CGTCCTTCATCAGTTTCGTCCA 60.609 50.000 0.00 0.00 0.00 4.02
28 29 3.399330 GTCCTTCATCAGTTTCGTCCAA 58.601 45.455 0.00 0.00 0.00 3.53
29 30 3.813166 GTCCTTCATCAGTTTCGTCCAAA 59.187 43.478 0.00 0.00 0.00 3.28
30 31 4.274950 GTCCTTCATCAGTTTCGTCCAAAA 59.725 41.667 0.00 0.00 0.00 2.44
31 32 5.048713 GTCCTTCATCAGTTTCGTCCAAAAT 60.049 40.000 0.00 0.00 0.00 1.82
32 33 6.148811 GTCCTTCATCAGTTTCGTCCAAAATA 59.851 38.462 0.00 0.00 0.00 1.40
33 34 6.884295 TCCTTCATCAGTTTCGTCCAAAATAT 59.116 34.615 0.00 0.00 0.00 1.28
34 35 7.393234 TCCTTCATCAGTTTCGTCCAAAATATT 59.607 33.333 0.00 0.00 0.00 1.28
35 36 8.028938 CCTTCATCAGTTTCGTCCAAAATATTT 58.971 33.333 0.00 0.00 0.00 1.40
36 37 8.964420 TTCATCAGTTTCGTCCAAAATATTTC 57.036 30.769 0.10 0.00 0.00 2.17
37 38 8.335532 TCATCAGTTTCGTCCAAAATATTTCT 57.664 30.769 0.10 0.00 0.00 2.52
38 39 8.450964 TCATCAGTTTCGTCCAAAATATTTCTC 58.549 33.333 0.10 0.00 0.00 2.87
39 40 7.979444 TCAGTTTCGTCCAAAATATTTCTCT 57.021 32.000 0.10 0.00 0.00 3.10
40 41 7.806690 TCAGTTTCGTCCAAAATATTTCTCTG 58.193 34.615 0.10 0.00 0.00 3.35
41 42 6.524586 CAGTTTCGTCCAAAATATTTCTCTGC 59.475 38.462 0.10 0.00 0.00 4.26
42 43 6.431234 AGTTTCGTCCAAAATATTTCTCTGCT 59.569 34.615 0.10 0.00 0.00 4.24
43 44 6.817765 TTCGTCCAAAATATTTCTCTGCTT 57.182 33.333 0.10 0.00 0.00 3.91
44 45 6.817765 TCGTCCAAAATATTTCTCTGCTTT 57.182 33.333 0.10 0.00 0.00 3.51
45 46 7.214467 TCGTCCAAAATATTTCTCTGCTTTT 57.786 32.000 0.10 0.00 0.00 2.27
46 47 7.305474 TCGTCCAAAATATTTCTCTGCTTTTC 58.695 34.615 0.10 0.00 0.00 2.29
72 73 6.970484 TCTTTCCAGAAGAACAAACATTAGC 58.030 36.000 0.00 0.00 32.95 3.09
143 147 0.608640 TCTCGTCTCCTTTCCCAAGC 59.391 55.000 0.00 0.00 0.00 4.01
144 148 0.321671 CTCGTCTCCTTTCCCAAGCA 59.678 55.000 0.00 0.00 0.00 3.91
145 149 0.762418 TCGTCTCCTTTCCCAAGCAA 59.238 50.000 0.00 0.00 0.00 3.91
146 150 1.142060 TCGTCTCCTTTCCCAAGCAAA 59.858 47.619 0.00 0.00 0.00 3.68
154 158 0.249405 TTCCCAAGCAAAGCAAAGCG 60.249 50.000 0.00 0.00 35.48 4.68
157 161 0.940991 CCAAGCAAAGCAAAGCGGAC 60.941 55.000 0.00 0.00 35.48 4.79
170 174 1.008309 GCGGACGATCCTCTGTAGC 60.008 63.158 0.00 0.00 33.30 3.58
176 180 1.341089 ACGATCCTCTGTAGCCAGACA 60.341 52.381 0.00 0.00 42.80 3.41
190 194 0.885879 CAGACACGTACAGGCTACCA 59.114 55.000 0.00 0.00 0.00 3.25
209 213 7.351981 GCTACCAAAATTTTCATTTTCACACC 58.648 34.615 0.00 0.00 40.09 4.16
214 218 7.254863 CCAAAATTTTCATTTTCACACCCTGAG 60.255 37.037 0.00 0.00 40.09 3.35
216 220 2.655090 TCATTTTCACACCCTGAGCA 57.345 45.000 0.00 0.00 0.00 4.26
217 221 2.507484 TCATTTTCACACCCTGAGCAG 58.493 47.619 0.00 0.00 0.00 4.24
218 222 2.106338 TCATTTTCACACCCTGAGCAGA 59.894 45.455 0.00 0.00 0.00 4.26
232 250 4.922692 CCTGAGCAGAGAAAATAGATAGCG 59.077 45.833 0.00 0.00 0.00 4.26
233 251 4.302455 TGAGCAGAGAAAATAGATAGCGC 58.698 43.478 0.00 0.00 0.00 5.92
234 252 3.658709 AGCAGAGAAAATAGATAGCGCC 58.341 45.455 2.29 0.00 0.00 6.53
235 253 2.739379 GCAGAGAAAATAGATAGCGCCC 59.261 50.000 2.29 0.00 0.00 6.13
236 254 3.803715 GCAGAGAAAATAGATAGCGCCCA 60.804 47.826 2.29 0.00 0.00 5.36
261 279 4.553323 CCATGCTGTTTTTCCTCTCAAAG 58.447 43.478 0.00 0.00 0.00 2.77
330 348 4.785453 GCAACCCCGCTCCCTCTG 62.785 72.222 0.00 0.00 0.00 3.35
333 351 3.547787 AACCCCGCTCCCTCTGTCT 62.548 63.158 0.00 0.00 0.00 3.41
334 352 2.164332 AACCCCGCTCCCTCTGTCTA 62.164 60.000 0.00 0.00 0.00 2.59
335 353 1.381327 CCCCGCTCCCTCTGTCTAA 60.381 63.158 0.00 0.00 0.00 2.10
336 354 1.677637 CCCCGCTCCCTCTGTCTAAC 61.678 65.000 0.00 0.00 0.00 2.34
337 355 1.677637 CCCGCTCCCTCTGTCTAACC 61.678 65.000 0.00 0.00 0.00 2.85
338 356 0.970937 CCGCTCCCTCTGTCTAACCA 60.971 60.000 0.00 0.00 0.00 3.67
339 357 0.457851 CGCTCCCTCTGTCTAACCAG 59.542 60.000 0.00 0.00 0.00 4.00
340 358 1.562783 GCTCCCTCTGTCTAACCAGT 58.437 55.000 0.00 0.00 34.02 4.00
341 359 2.736347 GCTCCCTCTGTCTAACCAGTA 58.264 52.381 0.00 0.00 34.02 2.74
342 360 2.691011 GCTCCCTCTGTCTAACCAGTAG 59.309 54.545 0.00 0.00 34.02 2.57
343 361 3.878527 GCTCCCTCTGTCTAACCAGTAGT 60.879 52.174 0.00 0.00 34.02 2.73
344 362 3.949113 CTCCCTCTGTCTAACCAGTAGTC 59.051 52.174 0.00 0.00 34.02 2.59
370 388 1.078426 GGGTCAACAGTCATCCGGG 60.078 63.158 0.00 0.00 0.00 5.73
436 478 3.442076 TCCCCTTTCTCTCTCTACAACC 58.558 50.000 0.00 0.00 0.00 3.77
514 582 3.126343 GGTTACAAGCAAGGTACCGATTG 59.874 47.826 14.04 14.04 34.45 2.67
523 591 2.884827 AGGTACCGATTGTTAACTCGC 58.115 47.619 6.18 0.00 33.63 5.03
557 634 7.566658 AATAATAATTCAGAGAGGGAGAGGG 57.433 40.000 0.00 0.00 0.00 4.30
558 635 4.841813 ATAATTCAGAGAGGGAGAGGGA 57.158 45.455 0.00 0.00 0.00 4.20
622 703 2.093921 GGTGGGTGTAGAGAGAGAAAGC 60.094 54.545 0.00 0.00 0.00 3.51
633 714 1.686110 GAGAAAGCGAGGGGAGGGA 60.686 63.158 0.00 0.00 0.00 4.20
637 718 3.986116 AAGCGAGGGGAGGGAGGAC 62.986 68.421 0.00 0.00 0.00 3.85
640 721 3.752167 GAGGGGAGGGAGGACCGA 61.752 72.222 0.00 0.00 46.96 4.69
692 790 2.997897 GTGAGGGGGAGCTGTCGT 60.998 66.667 0.00 0.00 0.00 4.34
693 791 2.680352 TGAGGGGGAGCTGTCGTC 60.680 66.667 0.00 0.00 0.00 4.20
694 792 3.827898 GAGGGGGAGCTGTCGTCG 61.828 72.222 0.00 0.00 0.00 5.12
696 795 3.379445 GGGGGAGCTGTCGTCGAA 61.379 66.667 0.00 0.00 0.00 3.71
702 801 0.778815 GAGCTGTCGTCGAAACACAG 59.221 55.000 13.01 13.01 37.48 3.66
706 805 2.311462 CTGTCGTCGAAACACAGAGAG 58.689 52.381 12.28 0.00 37.01 3.20
708 807 2.031944 TGTCGTCGAAACACAGAGAGAG 60.032 50.000 0.00 0.00 0.00 3.20
711 810 2.480802 CGTCGAAACACAGAGAGAGAGA 59.519 50.000 0.00 0.00 0.00 3.10
712 811 3.424302 CGTCGAAACACAGAGAGAGAGAG 60.424 52.174 0.00 0.00 0.00 3.20
713 812 3.078097 TCGAAACACAGAGAGAGAGAGG 58.922 50.000 0.00 0.00 0.00 3.69
716 815 1.544724 ACACAGAGAGAGAGAGGCAC 58.455 55.000 0.00 0.00 0.00 5.01
777 885 3.223589 GCAACCACCACCACCACC 61.224 66.667 0.00 0.00 0.00 4.61
778 886 2.277072 CAACCACCACCACCACCA 59.723 61.111 0.00 0.00 0.00 4.17
781 889 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
782 890 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
783 891 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
784 892 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
785 893 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
787 895 4.947147 CCACCACCACCACCACCG 62.947 72.222 0.00 0.00 0.00 4.94
788 896 3.867783 CACCACCACCACCACCGA 61.868 66.667 0.00 0.00 0.00 4.69
789 897 2.852075 ACCACCACCACCACCGAT 60.852 61.111 0.00 0.00 0.00 4.18
790 898 2.434331 CCACCACCACCACCGATT 59.566 61.111 0.00 0.00 0.00 3.34
792 900 1.523154 CCACCACCACCACCGATTTG 61.523 60.000 0.00 0.00 0.00 2.32
793 901 1.901464 ACCACCACCACCGATTTGC 60.901 57.895 0.00 0.00 0.00 3.68
794 902 2.635443 CCACCACCACCGATTTGCC 61.635 63.158 0.00 0.00 0.00 4.52
795 903 2.671619 ACCACCACCGATTTGCCG 60.672 61.111 0.00 0.00 0.00 5.69
796 904 2.359354 CCACCACCGATTTGCCGA 60.359 61.111 0.00 0.00 0.00 5.54
797 905 1.969064 CCACCACCGATTTGCCGAA 60.969 57.895 0.00 0.00 0.00 4.30
798 906 1.312371 CCACCACCGATTTGCCGAAT 61.312 55.000 0.00 0.00 0.00 3.34
799 907 1.374560 CACCACCGATTTGCCGAATA 58.625 50.000 0.00 0.00 0.00 1.75
800 908 1.740585 CACCACCGATTTGCCGAATAA 59.259 47.619 0.00 0.00 0.00 1.40
829 943 1.597854 ACACCACACCACATCGCAG 60.598 57.895 0.00 0.00 0.00 5.18
914 1032 4.472310 CCCTCCCCCAATCCCCCT 62.472 72.222 0.00 0.00 0.00 4.79
1088 1212 3.721706 GGAGCCAGGGGTGAGTGG 61.722 72.222 0.00 0.00 36.85 4.00
1123 1251 0.671781 CGCTTCTGGTTCTGGTCTGG 60.672 60.000 0.00 0.00 0.00 3.86
1126 1254 1.902508 CTTCTGGTTCTGGTCTGGCTA 59.097 52.381 0.00 0.00 0.00 3.93
1206 1342 2.742372 CGGGCGGAGGTTCTGTTG 60.742 66.667 0.00 0.00 0.00 3.33
1250 1386 1.821759 CTGTTTGTGTGGCGGTGGA 60.822 57.895 0.00 0.00 0.00 4.02
1454 1590 0.741221 CTACAAGCGCCTCAAGGGTC 60.741 60.000 2.29 0.00 37.43 4.46
1455 1591 1.476845 TACAAGCGCCTCAAGGGTCA 61.477 55.000 2.29 0.00 37.43 4.02
1458 1594 2.435059 GCGCCTCAAGGGTCAGTC 60.435 66.667 0.00 0.00 37.43 3.51
1459 1595 2.948720 GCGCCTCAAGGGTCAGTCT 61.949 63.158 0.00 0.00 37.43 3.24
1465 1601 1.201181 CTCAAGGGTCAGTCTCACTCG 59.799 57.143 0.00 0.00 0.00 4.18
1466 1602 0.962489 CAAGGGTCAGTCTCACTCGT 59.038 55.000 0.00 0.00 0.00 4.18
1467 1603 2.160205 CAAGGGTCAGTCTCACTCGTA 58.840 52.381 0.00 0.00 0.00 3.43
1468 1604 2.116827 AGGGTCAGTCTCACTCGTAG 57.883 55.000 0.00 0.00 0.00 3.51
1469 1605 0.452585 GGGTCAGTCTCACTCGTAGC 59.547 60.000 0.00 0.00 0.00 3.58
1470 1606 0.452585 GGTCAGTCTCACTCGTAGCC 59.547 60.000 0.00 0.00 0.00 3.93
1471 1607 1.166129 GTCAGTCTCACTCGTAGCCA 58.834 55.000 0.00 0.00 0.00 4.75
1511 1665 3.518998 GCGAGCGAGCTCACCCTA 61.519 66.667 22.81 0.00 42.86 3.53
1512 1666 2.718731 CGAGCGAGCTCACCCTAG 59.281 66.667 22.81 3.34 42.86 3.02
1513 1667 2.840066 CGAGCGAGCTCACCCTAGG 61.840 68.421 22.81 0.06 42.86 3.02
1516 1670 1.755008 GCGAGCTCACCCTAGGTCT 60.755 63.158 15.40 0.00 40.95 3.85
1552 1706 3.059188 GGATTTCTTCACGCGTTTTCTGA 60.059 43.478 10.22 0.00 0.00 3.27
1757 1914 1.535202 GCCCAACCCCAATGTTCCA 60.535 57.895 0.00 0.00 0.00 3.53
1786 1963 4.648762 CACCAATGGCCAGATGGTAATTAA 59.351 41.667 33.89 0.00 45.45 1.40
1792 1969 3.883489 GGCCAGATGGTAATTAACTCACC 59.117 47.826 0.00 0.00 37.57 4.02
1803 1980 0.970937 TAACTCACCCTCCTCTGCCG 60.971 60.000 0.00 0.00 0.00 5.69
1817 1994 3.312828 CTCTGCCGTAATATCAGACTGC 58.687 50.000 0.00 0.00 33.72 4.40
1818 1995 2.035961 TCTGCCGTAATATCAGACTGCC 59.964 50.000 0.00 0.00 32.48 4.85
1848 2033 0.042361 GATGCTCAATTGCTCGCTCG 60.042 55.000 0.00 0.00 0.00 5.03
1850 2035 2.705826 CTCAATTGCTCGCTCGCC 59.294 61.111 0.00 0.00 0.00 5.54
1984 2169 4.261741 GGTGCGCATTTGGAAATATCATCT 60.262 41.667 15.91 0.00 0.00 2.90
2040 2225 2.423538 GGGATACTGATGGTTGTTGTGC 59.576 50.000 0.00 0.00 0.00 4.57
2053 2239 3.123523 TTGTGCTGCAGTGCAACCG 62.124 57.895 20.22 8.93 45.12 4.44
2240 2426 2.931228 ACGACACTAGAAACTCGCTTC 58.069 47.619 0.00 0.00 0.00 3.86
2321 2507 7.876936 TTAGTATCGGTCAAACAGACTAGAT 57.123 36.000 0.00 0.00 46.72 1.98
2323 2509 7.499321 AGTATCGGTCAAACAGACTAGATAG 57.501 40.000 0.00 0.00 46.72 2.08
2333 2519 6.782082 AACAGACTAGATAGTTCATGCTCA 57.218 37.500 0.00 0.00 36.50 4.26
2345 2531 4.281941 AGTTCATGCTCAACTAGAGTGTCA 59.718 41.667 0.00 0.00 46.47 3.58
2389 2575 8.322905 ACCTAAAATGCCAAAAGAATATCCAT 57.677 30.769 0.00 0.00 0.00 3.41
2391 2577 9.617523 CCTAAAATGCCAAAAGAATATCCATTT 57.382 29.630 0.00 0.00 34.12 2.32
2426 2612 2.479219 CGCTCCGTAGAGGACCTAAAAC 60.479 54.545 0.00 0.00 45.98 2.43
2591 2782 8.725148 CATGCTAGAAAAACAATAGTTCTCTGT 58.275 33.333 0.00 0.00 36.84 3.41
2693 2884 9.694137 AAAAATGTGTTACTAGACTCTGTACTC 57.306 33.333 0.00 0.00 0.00 2.59
3220 3411 4.222124 AGATTATCCGGTTGACAAGCTT 57.778 40.909 14.96 0.00 0.00 3.74
3436 3627 5.657474 AGAGCAATGAAGGTGCATAATTTG 58.343 37.500 0.00 0.00 44.74 2.32
3501 3692 6.091305 GCTAATTTTGGCCATGTCTTCTTTTC 59.909 38.462 6.09 0.00 0.00 2.29
3699 3890 6.430925 GCCTATATGCTGACATCAAATGGTTA 59.569 38.462 0.00 0.00 37.74 2.85
3709 3900 9.143631 CTGACATCAAATGGTTATTCCTTTTTC 57.856 33.333 0.00 0.00 40.21 2.29
3710 3901 8.869109 TGACATCAAATGGTTATTCCTTTTTCT 58.131 29.630 0.00 0.00 40.21 2.52
3711 3902 9.710900 GACATCAAATGGTTATTCCTTTTTCTT 57.289 29.630 0.00 0.00 40.21 2.52
3744 3935 3.562176 CCACTTTGCCCTAATGAAGTCCT 60.562 47.826 0.00 0.00 30.41 3.85
3758 3949 9.667107 CTAATGAAGTCCTATTTTGTCTACCAA 57.333 33.333 0.00 0.00 0.00 3.67
3827 4018 2.032178 GCTGCCTCGATTGGTTTATGTC 59.968 50.000 0.00 0.00 0.00 3.06
3965 4156 5.133221 AGCACACAGTGATTTTAAGTTCCT 58.867 37.500 7.81 0.00 35.23 3.36
4031 4222 5.352569 GCTAACGAATGCTCCATATATGCTT 59.647 40.000 7.24 0.00 0.00 3.91
4166 4357 3.801114 TTCGACTCCATTGATCGTCAT 57.199 42.857 0.00 0.00 37.16 3.06
4208 4399 7.155328 AGAATGTCGTCTTCTTTGATGTAAGT 58.845 34.615 0.00 0.00 28.55 2.24
4282 4473 7.843490 CTTCGATGAAGTTTCCCTAACATTA 57.157 36.000 0.00 0.00 39.30 1.90
4283 4474 8.438676 CTTCGATGAAGTTTCCCTAACATTAT 57.561 34.615 0.00 0.00 39.30 1.28
4284 4475 8.801882 TTCGATGAAGTTTCCCTAACATTATT 57.198 30.769 0.00 0.00 39.30 1.40
4292 4483 8.336801 AGTTTCCCTAACATTATTTGTCTCAC 57.663 34.615 0.00 0.00 37.68 3.51
4497 4688 3.117663 ACAAGAAGAAGGTTACCAAGCCA 60.118 43.478 3.51 0.00 0.00 4.75
4598 4789 1.446792 CAGCTGCAGGTACCACTCG 60.447 63.158 19.71 0.00 0.00 4.18
4620 4811 5.242838 TCGACTTCCAGCATTTTGGTTATTT 59.757 36.000 0.00 0.00 39.35 1.40
4627 4818 8.825667 TCCAGCATTTTGGTTATTTTAGAAAC 57.174 30.769 0.00 0.00 39.35 2.78
4631 4822 9.435688 AGCATTTTGGTTATTTTAGAAACATCC 57.564 29.630 0.00 0.00 0.00 3.51
4659 4850 9.998106 CAATAGTTAGTATTAACATGCCCTACT 57.002 33.333 10.38 0.00 41.33 2.57
4670 4861 3.324556 ACATGCCCTACTTTGCAATGTTT 59.675 39.130 21.44 2.34 41.50 2.83
4672 4863 3.988819 TGCCCTACTTTGCAATGTTTTC 58.011 40.909 21.44 10.29 33.87 2.29
4709 4900 5.246307 ACTCAGAAGGCTGGTATTGTAAAC 58.754 41.667 0.00 0.00 42.53 2.01
4712 4903 4.764823 CAGAAGGCTGGTATTGTAAACCAA 59.235 41.667 0.00 0.00 46.14 3.67
4760 4951 2.738314 GTCTGCCATTTTTGTTGCATCC 59.262 45.455 0.00 0.00 32.53 3.51
4763 4954 1.460359 GCCATTTTTGTTGCATCCACG 59.540 47.619 0.00 0.00 0.00 4.94
4781 4972 1.347707 ACGCTTCTTGAGAATGGTGGA 59.652 47.619 0.00 0.00 33.01 4.02
5317 5514 3.816523 TGTTAACGGGAAAGTTCATCACC 59.183 43.478 0.26 0.00 35.70 4.02
5354 5551 9.362151 AGCATACTTAGCTTCTAGTTCTATCTT 57.638 33.333 0.00 0.00 39.87 2.40
5646 5844 2.508526 GTCACAACAAAGGCTGGAGAT 58.491 47.619 0.00 0.00 0.00 2.75
5664 5862 3.634448 GAGATGATGAGGAGTTCTCGGAA 59.366 47.826 0.00 0.00 45.32 4.30
5689 5887 3.312736 ACACCTTCAAATGGACAACCT 57.687 42.857 0.00 0.00 37.04 3.50
5692 5890 2.365293 ACCTTCAAATGGACAACCTTGC 59.635 45.455 0.00 0.00 37.04 4.01
5710 5908 1.382695 CTGATACCCCCGACCACCT 60.383 63.158 0.00 0.00 0.00 4.00
5820 6018 2.704572 CTCTTCTTCGCATTCTGGGTT 58.295 47.619 0.00 0.00 0.00 4.11
5913 6111 1.026718 GGTCCATCCTGTTGGCTTCG 61.027 60.000 0.00 0.00 36.66 3.79
6024 6229 5.046288 AGGAGATGAAAGGATGGATCAAC 57.954 43.478 0.00 0.00 0.00 3.18
6261 6481 4.093556 GCCACGAAGAAGAAAGAATACAGG 59.906 45.833 0.00 0.00 0.00 4.00
6268 6488 4.699257 AGAAGAAAGAATACAGGCAGCAAG 59.301 41.667 0.00 0.00 0.00 4.01
6269 6489 4.026356 AGAAAGAATACAGGCAGCAAGT 57.974 40.909 0.00 0.00 0.00 3.16
6270 6490 4.006319 AGAAAGAATACAGGCAGCAAGTC 58.994 43.478 0.00 0.00 0.00 3.01
6271 6491 3.423539 AAGAATACAGGCAGCAAGTCA 57.576 42.857 0.00 0.00 0.00 3.41
6272 6492 2.983229 AGAATACAGGCAGCAAGTCAG 58.017 47.619 0.00 0.00 0.00 3.51
6273 6493 2.304180 AGAATACAGGCAGCAAGTCAGT 59.696 45.455 0.00 0.00 0.00 3.41
6274 6494 2.393271 ATACAGGCAGCAAGTCAGTC 57.607 50.000 0.00 0.00 0.00 3.51
6316 6543 2.361757 TGTTGTTTCATTGTCCAGCCAG 59.638 45.455 0.00 0.00 0.00 4.85
6404 6632 2.505405 ACTGAGAGCTGTCGTCTGTAA 58.495 47.619 6.36 0.00 0.00 2.41
6541 6771 2.789339 GCTTGTTTGGAAAGCTTCGAAC 59.211 45.455 0.00 5.38 45.31 3.95
6579 6809 1.610554 GCTTGCTGCCCATTCATGGT 61.611 55.000 5.09 0.00 46.65 3.55
6592 6822 4.520492 CCATTCATGGTAGGGATTGTTAGC 59.480 45.833 0.00 0.00 43.05 3.09
6596 6826 2.999331 TGGTAGGGATTGTTAGCTTGC 58.001 47.619 0.00 0.00 0.00 4.01
6611 6854 6.607600 TGTTAGCTTGCTATCTTCTTCCTCTA 59.392 38.462 2.99 0.00 0.00 2.43
6665 6919 6.748333 ATAATGACACACAGATTTCCAGTG 57.252 37.500 0.00 0.00 39.12 3.66
6667 6921 1.537202 GACACACAGATTTCCAGTGGC 59.463 52.381 3.51 0.00 37.58 5.01
6670 6924 0.798776 CACAGATTTCCAGTGGCGTC 59.201 55.000 3.51 2.17 0.00 5.19
6716 6982 3.432890 CCAGGCCAGGATTCTTAACTCTC 60.433 52.174 8.94 0.00 0.00 3.20
6729 6995 0.329596 AACTCTCAAGGGACCATGCC 59.670 55.000 0.00 0.00 0.00 4.40
6730 6996 0.842030 ACTCTCAAGGGACCATGCCA 60.842 55.000 0.00 0.00 0.00 4.92
6736 7012 0.475906 AAGGGACCATGCCATAGCTC 59.524 55.000 0.00 0.00 40.80 4.09
6796 7072 1.404035 GAATTCCGCCCACATGGTTAC 59.596 52.381 0.00 0.00 36.04 2.50
6809 7085 0.963355 TGGTTACCGCTGGATTTGCC 60.963 55.000 0.00 0.00 37.10 4.52
6812 7088 3.690685 TACCGCTGGATTTGCCCGG 62.691 63.158 0.00 0.00 44.29 5.73
6832 7108 2.657237 GTGGTCCAGACACGGGAG 59.343 66.667 0.00 0.00 34.44 4.30
6833 7109 2.603473 TGGTCCAGACACGGGAGG 60.603 66.667 0.00 0.00 34.44 4.30
6834 7110 3.391382 GGTCCAGACACGGGAGGG 61.391 72.222 0.00 0.00 34.44 4.30
6835 7111 3.391382 GTCCAGACACGGGAGGGG 61.391 72.222 0.00 0.00 37.82 4.79
6836 7112 3.596799 TCCAGACACGGGAGGGGA 61.597 66.667 0.00 0.00 37.82 4.81
6837 7113 3.077556 CCAGACACGGGAGGGGAG 61.078 72.222 0.00 0.00 37.82 4.30
6838 7114 3.775654 CAGACACGGGAGGGGAGC 61.776 72.222 0.00 0.00 37.82 4.70
6850 7126 4.189580 GGGAGCCGGCCATGCTTA 62.190 66.667 26.15 0.00 39.69 3.09
6851 7127 2.124320 GGAGCCGGCCATGCTTAA 60.124 61.111 26.15 0.00 39.69 1.85
6852 7128 2.481471 GGAGCCGGCCATGCTTAAC 61.481 63.158 26.15 8.15 39.69 2.01
6853 7129 1.452108 GAGCCGGCCATGCTTAACT 60.452 57.895 26.15 0.00 39.69 2.24
6854 7130 1.718757 GAGCCGGCCATGCTTAACTG 61.719 60.000 26.15 0.00 39.69 3.16
6855 7131 2.046285 GCCGGCCATGCTTAACTGT 61.046 57.895 18.11 0.00 0.00 3.55
6856 7132 1.595093 GCCGGCCATGCTTAACTGTT 61.595 55.000 18.11 0.00 0.00 3.16
6857 7133 1.745232 CCGGCCATGCTTAACTGTTA 58.255 50.000 2.24 0.00 0.00 2.41
6858 7134 2.088423 CCGGCCATGCTTAACTGTTAA 58.912 47.619 12.08 12.08 0.00 2.01
6859 7135 2.097466 CCGGCCATGCTTAACTGTTAAG 59.903 50.000 27.78 27.78 44.25 1.85
6871 7147 3.872560 ACTGTTAAGCGTTGTTACAGC 57.127 42.857 0.00 0.00 0.00 4.40
6872 7148 3.199677 ACTGTTAAGCGTTGTTACAGCA 58.800 40.909 0.00 0.00 0.00 4.41
6873 7149 3.247648 ACTGTTAAGCGTTGTTACAGCAG 59.752 43.478 0.00 0.00 0.00 4.24
6874 7150 3.199677 TGTTAAGCGTTGTTACAGCAGT 58.800 40.909 0.00 0.00 0.00 4.40
6875 7151 3.001838 TGTTAAGCGTTGTTACAGCAGTG 59.998 43.478 0.00 0.00 0.00 3.66
6876 7152 0.307760 AAGCGTTGTTACAGCAGTGC 59.692 50.000 7.13 7.13 0.00 4.40
6877 7153 1.082104 GCGTTGTTACAGCAGTGCC 60.082 57.895 12.58 0.00 0.00 5.01
6878 7154 1.781025 GCGTTGTTACAGCAGTGCCA 61.781 55.000 12.58 0.00 0.00 4.92
6879 7155 0.235665 CGTTGTTACAGCAGTGCCAG 59.764 55.000 12.58 7.62 0.00 4.85
6880 7156 1.308998 GTTGTTACAGCAGTGCCAGT 58.691 50.000 12.58 13.63 0.00 4.00
6881 7157 1.002468 GTTGTTACAGCAGTGCCAGTG 60.002 52.381 12.58 6.38 0.00 3.66
6882 7158 1.165907 TGTTACAGCAGTGCCAGTGC 61.166 55.000 16.76 16.76 44.65 4.40
6883 7159 1.148048 TTACAGCAGTGCCAGTGCA 59.852 52.632 25.33 3.03 46.65 4.57
6891 7167 2.032528 TGCCAGTGCAGTGTAGGC 59.967 61.111 19.93 16.40 44.23 3.93
6892 7168 3.121030 GCCAGTGCAGTGTAGGCG 61.121 66.667 19.93 5.64 35.42 5.52
6893 7169 3.121030 CCAGTGCAGTGTAGGCGC 61.121 66.667 19.93 0.00 41.91 6.53
6894 7170 2.357396 CAGTGCAGTGTAGGCGCA 60.357 61.111 13.67 0.00 43.94 6.09
6895 7171 2.047844 AGTGCAGTGTAGGCGCAG 60.048 61.111 10.83 0.00 43.94 5.18
6896 7172 3.121030 GTGCAGTGTAGGCGCAGG 61.121 66.667 10.83 0.00 41.27 4.85
6897 7173 4.393155 TGCAGTGTAGGCGCAGGG 62.393 66.667 10.83 0.00 0.00 4.45
6899 7175 4.393155 CAGTGTAGGCGCAGGGCA 62.393 66.667 10.83 0.00 46.16 5.36
6900 7176 4.087892 AGTGTAGGCGCAGGGCAG 62.088 66.667 10.83 0.00 46.16 4.85
6919 7195 3.866582 CCAGTGGGAGCCGGATCC 61.867 72.222 31.09 31.09 38.76 3.36
6931 7207 3.813724 GGATCCCCTGGCCACCTG 61.814 72.222 0.00 0.00 0.00 4.00
6932 7208 2.692368 GATCCCCTGGCCACCTGA 60.692 66.667 0.00 0.00 0.00 3.86
6933 7209 3.017581 ATCCCCTGGCCACCTGAC 61.018 66.667 0.00 0.00 0.00 3.51
6936 7212 3.953775 CCCTGGCCACCTGACGTT 61.954 66.667 0.00 0.00 0.00 3.99
6937 7213 2.669569 CCTGGCCACCTGACGTTG 60.670 66.667 0.00 0.00 0.00 4.10
6938 7214 2.669569 CTGGCCACCTGACGTTGG 60.670 66.667 0.00 6.95 0.00 3.77
6939 7215 3.164977 TGGCCACCTGACGTTGGA 61.165 61.111 0.00 0.00 0.00 3.53
6940 7216 2.668550 GGCCACCTGACGTTGGAC 60.669 66.667 14.24 4.82 0.00 4.02
6941 7217 2.668550 GCCACCTGACGTTGGACC 60.669 66.667 14.24 0.00 0.00 4.46
6942 7218 2.825982 CCACCTGACGTTGGACCA 59.174 61.111 14.24 0.00 0.00 4.02
6943 7219 1.597027 CCACCTGACGTTGGACCAC 60.597 63.158 14.24 0.00 0.00 4.16
6944 7220 1.445942 CACCTGACGTTGGACCACT 59.554 57.895 14.24 0.00 0.00 4.00
6945 7221 0.880278 CACCTGACGTTGGACCACTG 60.880 60.000 14.24 0.00 0.00 3.66
6946 7222 1.046472 ACCTGACGTTGGACCACTGA 61.046 55.000 14.24 0.00 0.00 3.41
6947 7223 0.600255 CCTGACGTTGGACCACTGAC 60.600 60.000 0.00 0.00 0.00 3.51
6948 7224 0.939577 CTGACGTTGGACCACTGACG 60.940 60.000 14.23 14.23 41.00 4.35
6949 7225 2.279918 ACGTTGGACCACTGACGC 60.280 61.111 15.46 0.00 38.97 5.19
6950 7226 3.403057 CGTTGGACCACTGACGCG 61.403 66.667 3.53 3.53 0.00 6.01
6951 7227 2.279918 GTTGGACCACTGACGCGT 60.280 61.111 13.85 13.85 0.00 6.01
6952 7228 2.279851 TTGGACCACTGACGCGTG 60.280 61.111 20.70 5.54 34.71 5.34
6970 7246 4.368543 GGTCCGGGTCCACACGTC 62.369 72.222 0.00 0.00 42.08 4.34
6971 7247 3.608662 GTCCGGGTCCACACGTCA 61.609 66.667 0.00 0.00 42.08 4.35
6972 7248 3.299977 TCCGGGTCCACACGTCAG 61.300 66.667 0.00 0.00 42.08 3.51
6975 7251 3.986006 GGGTCCACACGTCAGCGA 61.986 66.667 0.00 0.00 42.00 4.93
6976 7252 2.430921 GGTCCACACGTCAGCGAG 60.431 66.667 0.00 0.00 42.00 5.03
6977 7253 2.335369 GTCCACACGTCAGCGAGT 59.665 61.111 0.00 0.00 42.28 4.18
6990 7266 4.746951 CGAGTGCGCCGTACGTCA 62.747 66.667 15.21 6.28 46.11 4.35
6991 7267 2.874780 GAGTGCGCCGTACGTCAG 60.875 66.667 15.21 6.03 46.11 3.51
6992 7268 3.318539 GAGTGCGCCGTACGTCAGA 62.319 63.158 15.21 0.00 46.11 3.27
6993 7269 2.874780 GTGCGCCGTACGTCAGAG 60.875 66.667 15.21 1.85 46.11 3.35
6994 7270 4.111016 TGCGCCGTACGTCAGAGG 62.111 66.667 15.21 0.00 46.11 3.69
6995 7271 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
6996 7272 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
6997 7273 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
6998 7274 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
6999 7275 1.429825 CCGTACGTCAGAGGAGCTG 59.570 63.158 15.21 0.00 46.31 4.24
7000 7276 1.226435 CGTACGTCAGAGGAGCTGC 60.226 63.158 7.22 0.00 44.52 5.25
7001 7277 1.226435 GTACGTCAGAGGAGCTGCG 60.226 63.158 0.00 0.00 44.52 5.18
7002 7278 2.986413 ACGTCAGAGGAGCTGCGT 60.986 61.111 0.00 0.00 45.57 5.24
7003 7279 1.645704 TACGTCAGAGGAGCTGCGTC 61.646 60.000 14.59 0.00 46.59 5.19
7004 7280 2.183046 GTCAGAGGAGCTGCGTCC 59.817 66.667 0.00 9.30 44.52 4.79
7005 7281 2.283173 TCAGAGGAGCTGCGTCCA 60.283 61.111 16.74 0.00 44.52 4.02
7006 7282 2.183811 CAGAGGAGCTGCGTCCAG 59.816 66.667 16.74 6.11 39.34 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.457366 AACTGATGAAGGACGGTGAC 57.543 50.000 0.00 0.00 0.00 3.67
3 4 1.726791 CGAAACTGATGAAGGACGGTG 59.273 52.381 0.00 0.00 0.00 4.94
4 5 1.343465 ACGAAACTGATGAAGGACGGT 59.657 47.619 0.00 0.00 0.00 4.83
6 7 1.993370 GGACGAAACTGATGAAGGACG 59.007 52.381 0.00 0.00 0.00 4.79
7 8 3.040147 TGGACGAAACTGATGAAGGAC 57.960 47.619 0.00 0.00 0.00 3.85
8 9 3.762407 TTGGACGAAACTGATGAAGGA 57.238 42.857 0.00 0.00 0.00 3.36
9 10 4.829064 TTTTGGACGAAACTGATGAAGG 57.171 40.909 0.00 0.00 0.00 3.46
10 11 8.970691 AAATATTTTGGACGAAACTGATGAAG 57.029 30.769 0.00 0.00 0.00 3.02
11 12 8.792633 AGAAATATTTTGGACGAAACTGATGAA 58.207 29.630 1.43 0.00 0.00 2.57
12 13 8.335532 AGAAATATTTTGGACGAAACTGATGA 57.664 30.769 1.43 0.00 0.00 2.92
13 14 8.454106 AGAGAAATATTTTGGACGAAACTGATG 58.546 33.333 1.43 0.00 0.00 3.07
14 15 8.454106 CAGAGAAATATTTTGGACGAAACTGAT 58.546 33.333 1.43 0.00 0.00 2.90
15 16 7.573096 GCAGAGAAATATTTTGGACGAAACTGA 60.573 37.037 1.43 0.00 0.00 3.41
16 17 6.524586 GCAGAGAAATATTTTGGACGAAACTG 59.475 38.462 1.43 0.00 0.00 3.16
17 18 6.431234 AGCAGAGAAATATTTTGGACGAAACT 59.569 34.615 1.43 0.00 0.00 2.66
18 19 6.612306 AGCAGAGAAATATTTTGGACGAAAC 58.388 36.000 1.43 0.00 0.00 2.78
19 20 6.817765 AGCAGAGAAATATTTTGGACGAAA 57.182 33.333 1.43 0.00 0.00 3.46
20 21 6.817765 AAGCAGAGAAATATTTTGGACGAA 57.182 33.333 1.43 0.00 0.00 3.85
21 22 6.817765 AAAGCAGAGAAATATTTTGGACGA 57.182 33.333 1.43 0.00 0.00 4.20
22 23 7.308435 AGAAAAGCAGAGAAATATTTTGGACG 58.692 34.615 1.43 0.00 0.00 4.79
23 24 9.133627 GAAGAAAAGCAGAGAAATATTTTGGAC 57.866 33.333 1.43 0.00 0.00 4.02
24 25 9.082313 AGAAGAAAAGCAGAGAAATATTTTGGA 57.918 29.630 1.43 0.00 0.00 3.53
25 26 9.702494 AAGAAGAAAAGCAGAGAAATATTTTGG 57.298 29.630 1.43 0.00 0.00 3.28
28 29 9.920133 GGAAAGAAGAAAAGCAGAGAAATATTT 57.080 29.630 0.00 0.00 0.00 1.40
29 30 9.082313 TGGAAAGAAGAAAAGCAGAGAAATATT 57.918 29.630 0.00 0.00 0.00 1.28
30 31 8.641498 TGGAAAGAAGAAAAGCAGAGAAATAT 57.359 30.769 0.00 0.00 0.00 1.28
31 32 7.939039 TCTGGAAAGAAGAAAAGCAGAGAAATA 59.061 33.333 0.00 0.00 0.00 1.40
32 33 6.774656 TCTGGAAAGAAGAAAAGCAGAGAAAT 59.225 34.615 0.00 0.00 0.00 2.17
33 34 6.122277 TCTGGAAAGAAGAAAAGCAGAGAAA 58.878 36.000 0.00 0.00 0.00 2.52
34 35 5.684704 TCTGGAAAGAAGAAAAGCAGAGAA 58.315 37.500 0.00 0.00 0.00 2.87
35 36 5.296151 TCTGGAAAGAAGAAAAGCAGAGA 57.704 39.130 0.00 0.00 0.00 3.10
36 37 5.999721 CTTCTGGAAAGAAGAAAAGCAGAG 58.000 41.667 9.41 0.00 45.93 3.35
46 47 7.592903 GCTAATGTTTGTTCTTCTGGAAAGAAG 59.407 37.037 8.83 8.83 44.80 2.85
72 73 3.934457 ACAAAAAGGGATTTACTGCCG 57.066 42.857 0.00 0.00 41.10 5.69
143 147 0.179189 GGATCGTCCGCTTTGCTTTG 60.179 55.000 0.00 0.00 0.00 2.77
144 148 0.321653 AGGATCGTCCGCTTTGCTTT 60.322 50.000 0.00 0.00 42.75 3.51
145 149 0.741221 GAGGATCGTCCGCTTTGCTT 60.741 55.000 3.97 0.00 42.75 3.91
146 150 1.153549 GAGGATCGTCCGCTTTGCT 60.154 57.895 3.97 0.00 42.75 3.91
154 158 2.808598 TGGCTACAGAGGATCGTCC 58.191 57.895 11.71 0.00 42.67 4.79
170 174 0.172803 GGTAGCCTGTACGTGTCTGG 59.827 60.000 0.00 6.24 0.00 3.86
176 180 4.822896 TGAAAATTTTGGTAGCCTGTACGT 59.177 37.500 8.47 0.00 0.00 3.57
190 194 6.260714 GCTCAGGGTGTGAAAATGAAAATTTT 59.739 34.615 2.28 2.28 36.54 1.82
209 213 4.922692 CGCTATCTATTTTCTCTGCTCAGG 59.077 45.833 0.00 0.00 0.00 3.86
214 218 2.739379 GGGCGCTATCTATTTTCTCTGC 59.261 50.000 7.64 0.00 0.00 4.26
216 220 3.556004 GCTGGGCGCTATCTATTTTCTCT 60.556 47.826 7.64 0.00 35.14 3.10
217 221 2.739379 GCTGGGCGCTATCTATTTTCTC 59.261 50.000 7.64 0.00 35.14 2.87
218 222 2.551071 GGCTGGGCGCTATCTATTTTCT 60.551 50.000 7.64 0.00 39.13 2.52
302 320 4.293648 GGGTTGCGTTGGTTGGGC 62.294 66.667 0.00 0.00 0.00 5.36
325 343 3.607741 TCGACTACTGGTTAGACAGAGG 58.392 50.000 0.00 0.00 40.97 3.69
330 348 4.810491 CCTAGACTCGACTACTGGTTAGAC 59.190 50.000 0.00 0.00 0.00 2.59
333 351 3.521126 ACCCTAGACTCGACTACTGGTTA 59.479 47.826 0.00 0.00 0.00 2.85
334 352 2.308275 ACCCTAGACTCGACTACTGGTT 59.692 50.000 0.00 0.00 0.00 3.67
335 353 1.914798 ACCCTAGACTCGACTACTGGT 59.085 52.381 0.00 0.00 0.00 4.00
336 354 2.093075 TGACCCTAGACTCGACTACTGG 60.093 54.545 0.00 0.00 0.00 4.00
337 355 3.263489 TGACCCTAGACTCGACTACTG 57.737 52.381 0.00 0.00 0.00 2.74
338 356 3.008813 TGTTGACCCTAGACTCGACTACT 59.991 47.826 0.00 0.00 0.00 2.57
339 357 3.341823 TGTTGACCCTAGACTCGACTAC 58.658 50.000 0.00 0.00 0.00 2.73
340 358 3.008813 ACTGTTGACCCTAGACTCGACTA 59.991 47.826 0.00 0.00 0.00 2.59
341 359 2.224818 ACTGTTGACCCTAGACTCGACT 60.225 50.000 0.00 0.00 0.00 4.18
342 360 2.161030 ACTGTTGACCCTAGACTCGAC 58.839 52.381 0.00 0.00 0.00 4.20
343 361 2.224695 TGACTGTTGACCCTAGACTCGA 60.225 50.000 0.00 0.00 0.00 4.04
344 362 2.160205 TGACTGTTGACCCTAGACTCG 58.840 52.381 0.00 0.00 0.00 4.18
382 415 4.367023 TGACGGTGTGGCGCTACC 62.367 66.667 21.89 18.34 39.84 3.18
547 624 0.935194 TCCCTACTTCCCTCTCCCTC 59.065 60.000 0.00 0.00 0.00 4.30
548 625 1.008571 GTTCCCTACTTCCCTCTCCCT 59.991 57.143 0.00 0.00 0.00 4.20
549 626 1.498264 GTTCCCTACTTCCCTCTCCC 58.502 60.000 0.00 0.00 0.00 4.30
550 627 1.498264 GGTTCCCTACTTCCCTCTCC 58.502 60.000 0.00 0.00 0.00 3.71
554 631 0.115745 TGTCGGTTCCCTACTTCCCT 59.884 55.000 0.00 0.00 0.00 4.20
556 633 1.204231 GACTGTCGGTTCCCTACTTCC 59.796 57.143 0.00 0.00 0.00 3.46
557 634 2.169330 AGACTGTCGGTTCCCTACTTC 58.831 52.381 1.52 0.00 0.00 3.01
558 635 2.305858 AGACTGTCGGTTCCCTACTT 57.694 50.000 1.52 0.00 0.00 2.24
640 721 3.687321 TACTACTCGCTCGCCCCGT 62.687 63.158 0.00 0.00 0.00 5.28
692 790 3.078097 CCTCTCTCTCTCTGTGTTTCGA 58.922 50.000 0.00 0.00 0.00 3.71
693 791 2.415357 GCCTCTCTCTCTCTGTGTTTCG 60.415 54.545 0.00 0.00 0.00 3.46
694 792 2.560542 TGCCTCTCTCTCTCTGTGTTTC 59.439 50.000 0.00 0.00 0.00 2.78
696 795 1.892474 GTGCCTCTCTCTCTCTGTGTT 59.108 52.381 0.00 0.00 0.00 3.32
702 801 0.969917 TGCCTGTGCCTCTCTCTCTC 60.970 60.000 0.00 0.00 36.33 3.20
706 805 1.079266 CTGTGCCTGTGCCTCTCTC 60.079 63.158 0.00 0.00 36.33 3.20
708 807 2.745492 GCTGTGCCTGTGCCTCTC 60.745 66.667 0.00 0.00 36.33 3.20
772 880 2.002018 AAATCGGTGGTGGTGGTGGT 62.002 55.000 0.00 0.00 0.00 4.16
773 881 1.228429 AAATCGGTGGTGGTGGTGG 60.228 57.895 0.00 0.00 0.00 4.61
774 882 1.956043 CAAATCGGTGGTGGTGGTG 59.044 57.895 0.00 0.00 0.00 4.17
775 883 1.901464 GCAAATCGGTGGTGGTGGT 60.901 57.895 0.00 0.00 0.00 4.16
777 885 2.961768 GGCAAATCGGTGGTGGTG 59.038 61.111 0.00 0.00 0.00 4.17
778 886 2.671619 CGGCAAATCGGTGGTGGT 60.672 61.111 0.00 0.00 0.00 4.16
781 889 2.116827 TTATTCGGCAAATCGGTGGT 57.883 45.000 0.00 0.00 0.00 4.16
782 890 3.495670 TTTTATTCGGCAAATCGGTGG 57.504 42.857 0.00 0.00 0.00 4.61
807 915 0.586319 CGATGTGGTGTGGTGTGTTC 59.414 55.000 0.00 0.00 0.00 3.18
829 943 1.804601 GCCTGGTGTTGTAGTACCAC 58.195 55.000 0.00 0.00 41.80 4.16
860 974 1.758862 GAATGAATTGGGGAAGGGCTG 59.241 52.381 0.00 0.00 0.00 4.85
939 1057 2.115911 CCGAGACAGAGGAGGTCGG 61.116 68.421 0.00 0.00 43.82 4.79
1095 1223 0.951040 AACCAGAAGCGAAGGAAGCG 60.951 55.000 0.00 0.00 40.04 4.68
1096 1224 0.799393 GAACCAGAAGCGAAGGAAGC 59.201 55.000 0.00 0.00 0.00 3.86
1098 1226 1.270839 CCAGAACCAGAAGCGAAGGAA 60.271 52.381 0.00 0.00 0.00 3.36
1099 1227 0.321671 CCAGAACCAGAAGCGAAGGA 59.678 55.000 0.00 0.00 0.00 3.36
1192 1320 1.228154 AACCCAACAGAACCTCCGC 60.228 57.895 0.00 0.00 0.00 5.54
1193 1321 1.515521 GCAACCCAACAGAACCTCCG 61.516 60.000 0.00 0.00 0.00 4.63
1195 1323 1.515521 CGGCAACCCAACAGAACCTC 61.516 60.000 0.00 0.00 0.00 3.85
1196 1324 1.528309 CGGCAACCCAACAGAACCT 60.528 57.895 0.00 0.00 0.00 3.50
1198 1326 0.458260 AAACGGCAACCCAACAGAAC 59.542 50.000 0.00 0.00 0.00 3.01
1199 1327 0.741915 GAAACGGCAACCCAACAGAA 59.258 50.000 0.00 0.00 0.00 3.02
1200 1328 0.106918 AGAAACGGCAACCCAACAGA 60.107 50.000 0.00 0.00 0.00 3.41
1202 1330 0.394488 TGAGAAACGGCAACCCAACA 60.394 50.000 0.00 0.00 0.00 3.33
1206 1342 1.468914 GAGATTGAGAAACGGCAACCC 59.531 52.381 0.00 0.00 0.00 4.11
1454 1590 0.171455 GGTGGCTACGAGTGAGACTG 59.829 60.000 0.00 0.00 0.00 3.51
1455 1591 0.966370 GGGTGGCTACGAGTGAGACT 60.966 60.000 0.00 0.00 0.00 3.24
1458 1594 1.541310 TTGGGGTGGCTACGAGTGAG 61.541 60.000 0.00 0.00 0.00 3.51
1459 1595 0.907704 ATTGGGGTGGCTACGAGTGA 60.908 55.000 0.00 0.00 0.00 3.41
1465 1601 2.828549 CGGCATTGGGGTGGCTAC 60.829 66.667 0.00 0.00 42.03 3.58
1466 1602 4.813235 GCGGCATTGGGGTGGCTA 62.813 66.667 0.00 0.00 42.03 3.93
1500 1654 2.815384 GGAGACCTAGGGTGAGCTC 58.185 63.158 14.81 6.82 35.25 4.09
1536 1690 1.136884 CGAGTCAGAAAACGCGTGAAG 60.137 52.381 14.98 1.29 37.62 3.02
1537 1691 0.850217 CGAGTCAGAAAACGCGTGAA 59.150 50.000 14.98 0.00 37.62 3.18
1538 1692 0.937699 CCGAGTCAGAAAACGCGTGA 60.938 55.000 14.98 1.32 40.26 4.35
1539 1693 0.937699 TCCGAGTCAGAAAACGCGTG 60.938 55.000 14.98 0.00 40.26 5.34
1552 1706 0.609131 CCCTGCAACCAAATCCGAGT 60.609 55.000 0.00 0.00 0.00 4.18
1583 1740 4.880426 TCCTCCTCATCCCCGGGC 62.880 72.222 17.73 0.00 0.00 6.13
1757 1914 0.842030 TCTGGCCATTGGTGAGGAGT 60.842 55.000 5.51 0.00 0.00 3.85
1786 1963 2.151307 TACGGCAGAGGAGGGTGAGT 62.151 60.000 0.00 0.00 0.00 3.41
1792 1969 3.057174 GTCTGATATTACGGCAGAGGAGG 60.057 52.174 0.00 0.00 39.15 4.30
1803 1980 3.760580 AGGCAGGCAGTCTGATATTAC 57.239 47.619 6.09 0.00 46.18 1.89
1848 2033 2.503375 CGTCGACCTACACACGGC 60.503 66.667 10.58 0.00 0.00 5.68
1850 2035 0.167470 ATGTCGTCGACCTACACACG 59.833 55.000 22.05 1.90 0.00 4.49
2040 2225 1.364626 GGATCTCGGTTGCACTGCAG 61.365 60.000 13.48 13.48 40.61 4.41
2240 2426 6.562270 CGCTAAAGACCAAACTAATAGATGCG 60.562 42.308 0.00 0.00 0.00 4.73
2293 2479 4.868171 GTCTGTTTGACCGATACTAATGCA 59.132 41.667 0.00 0.00 39.69 3.96
2321 2507 5.476945 TGACACTCTAGTTGAGCATGAACTA 59.523 40.000 0.00 0.89 41.97 2.24
2323 2509 4.387256 GTGACACTCTAGTTGAGCATGAAC 59.613 45.833 0.00 0.00 46.41 3.18
2333 2519 2.558795 AGCACATCGTGACACTCTAGTT 59.441 45.455 3.68 0.00 35.23 2.24
2345 2531 0.393944 TCCTCTACGGAGCACATCGT 60.394 55.000 0.00 0.00 42.55 3.73
2426 2612 5.164061 GCAAAATGTACATCTTCTTTTGGCG 60.164 40.000 23.20 7.81 37.31 5.69
2611 2802 7.694093 AGACCAGATAGAATTTTCTTCCTTGT 58.306 34.615 0.00 0.00 38.70 3.16
2667 2858 9.694137 GAGTACAGAGTCTAGTAACACATTTTT 57.306 33.333 0.00 0.00 0.00 1.94
2727 2918 1.236628 GCTGCCTAGCTTCATCCATG 58.763 55.000 0.00 0.00 46.57 3.66
3220 3411 6.094464 CACCATCATCAGAAACATAGCAAGAA 59.906 38.462 0.00 0.00 0.00 2.52
3436 3627 2.716217 AGGAACATAGCAAAGTGGCTC 58.284 47.619 0.00 0.00 44.54 4.70
3501 3692 6.323482 TCTTGAATTCCTCATACTCTCTCTGG 59.677 42.308 2.27 0.00 32.78 3.86
3609 3800 1.737793 GGGTGATCACGGACATTGTTC 59.262 52.381 19.33 1.58 0.00 3.18
3675 3866 6.889301 AACCATTTGATGTCAGCATATAGG 57.111 37.500 0.00 0.82 35.07 2.57
3699 3890 8.956426 GTGGGAAAAAGAAAAAGAAAAAGGAAT 58.044 29.630 0.00 0.00 0.00 3.01
3709 3900 4.335315 GGGCAAAGTGGGAAAAAGAAAAAG 59.665 41.667 0.00 0.00 0.00 2.27
3710 3901 4.018870 AGGGCAAAGTGGGAAAAAGAAAAA 60.019 37.500 0.00 0.00 0.00 1.94
3711 3902 3.521531 AGGGCAAAGTGGGAAAAAGAAAA 59.478 39.130 0.00 0.00 0.00 2.29
3712 3903 3.111484 AGGGCAAAGTGGGAAAAAGAAA 58.889 40.909 0.00 0.00 0.00 2.52
3713 3904 2.758130 AGGGCAAAGTGGGAAAAAGAA 58.242 42.857 0.00 0.00 0.00 2.52
3714 3905 2.470057 AGGGCAAAGTGGGAAAAAGA 57.530 45.000 0.00 0.00 0.00 2.52
3715 3906 4.283212 TCATTAGGGCAAAGTGGGAAAAAG 59.717 41.667 0.00 0.00 0.00 2.27
3716 3907 4.227197 TCATTAGGGCAAAGTGGGAAAAA 58.773 39.130 0.00 0.00 0.00 1.94
3827 4018 1.537202 CCTGGCCGTTTTTCTCTTGAG 59.463 52.381 0.00 0.00 0.00 3.02
3916 4107 5.319043 ACTAGCTATAGAGAAGACTGGCT 57.681 43.478 3.21 0.00 32.93 4.75
3965 4156 7.286775 ACCTGTAAAAGAGCAAACCATTAGAAA 59.713 33.333 0.00 0.00 0.00 2.52
3977 4168 1.414919 ACACGGACCTGTAAAAGAGCA 59.585 47.619 0.00 0.00 0.00 4.26
4031 4222 7.619965 TCACATAGTGATCACAATCCAAGTTA 58.380 34.615 27.02 8.23 37.67 2.24
4082 4273 5.008712 CAGAGGATCCATCATGAAACACATG 59.991 44.000 15.82 0.00 46.67 3.21
4104 4295 6.431234 ACATAGCAAACTTTCTTTCCTACCAG 59.569 38.462 0.00 0.00 0.00 4.00
4166 4357 6.363357 CGACATTCTTGTTAGCATATCGATCA 59.637 38.462 0.00 0.00 35.79 2.92
4208 4399 9.690913 AATATCTCAGAAACATGAAATCCAAGA 57.309 29.630 0.00 1.36 0.00 3.02
4242 4433 7.463383 CTTCATCGAAGTTACACAGAATGTAGC 60.463 40.741 0.00 0.00 40.26 3.58
4282 4473 5.999600 TCATGTTGATCTGTGTGAGACAAAT 59.000 36.000 0.00 0.00 32.80 2.32
4283 4474 5.367302 TCATGTTGATCTGTGTGAGACAAA 58.633 37.500 0.00 0.00 32.80 2.83
4284 4475 4.959723 TCATGTTGATCTGTGTGAGACAA 58.040 39.130 0.00 0.00 32.80 3.18
4292 4483 5.009911 TCCAAACCTTTCATGTTGATCTGTG 59.990 40.000 0.00 0.00 0.00 3.66
4497 4688 6.126911 ACAACCTCTTCTTCTTCTCTGTCTTT 60.127 38.462 0.00 0.00 0.00 2.52
4598 4789 8.303876 TCTAAAATAACCAAAATGCTGGAAGTC 58.696 33.333 0.00 0.00 38.96 3.01
4653 4844 3.574614 CCGAAAACATTGCAAAGTAGGG 58.425 45.455 7.88 3.70 0.00 3.53
4659 4850 1.410517 TCCTGCCGAAAACATTGCAAA 59.589 42.857 1.71 0.00 32.58 3.68
4670 4861 0.320771 GAGTTTCAGCTCCTGCCGAA 60.321 55.000 0.00 0.00 40.80 4.30
4672 4863 1.004560 TGAGTTTCAGCTCCTGCCG 60.005 57.895 0.00 0.00 40.80 5.69
4709 4900 8.078596 CCAAATTTCTTCTCTAACTTCTGTTGG 58.921 37.037 0.00 0.00 37.59 3.77
4712 4903 6.207614 GGCCAAATTTCTTCTCTAACTTCTGT 59.792 38.462 0.00 0.00 0.00 3.41
4745 4936 2.406130 AGCGTGGATGCAACAAAAATG 58.594 42.857 0.00 0.00 37.31 2.32
4746 4937 2.818130 AGCGTGGATGCAACAAAAAT 57.182 40.000 0.00 0.00 37.31 1.82
4760 4951 1.466167 CCACCATTCTCAAGAAGCGTG 59.534 52.381 12.01 12.01 37.48 5.34
4763 4954 2.489722 GGTTCCACCATTCTCAAGAAGC 59.510 50.000 0.00 0.00 38.42 3.86
4781 4972 2.188817 GGACTATCACACCTCAGGGTT 58.811 52.381 0.00 0.00 44.73 4.11
5317 5514 4.101741 AGCTAAGTATGCTTTACCTCTGGG 59.898 45.833 0.00 0.00 37.52 4.45
5342 5539 6.039616 GCCACTTCACAGAAGATAGAACTAG 58.960 44.000 13.23 0.00 0.00 2.57
5354 5551 1.202687 CCAGACTTGCCACTTCACAGA 60.203 52.381 0.00 0.00 0.00 3.41
5451 5649 5.630680 CGTAGCAAAAATGCAGATGAAAAGT 59.369 36.000 3.41 0.00 37.25 2.66
5505 5703 2.474266 CACCAATCGTCAACCGCG 59.526 61.111 0.00 0.00 36.19 6.46
5646 5844 2.493675 CAGTTCCGAGAACTCCTCATCA 59.506 50.000 14.09 0.00 42.06 3.07
5664 5862 4.431416 TGTCCATTTGAAGGTGTACAGT 57.569 40.909 0.00 0.00 0.00 3.55
5689 5887 1.613928 TGGTCGGGGGTATCAGCAA 60.614 57.895 0.00 0.00 0.00 3.91
5692 5890 0.981277 AAGGTGGTCGGGGGTATCAG 60.981 60.000 0.00 0.00 0.00 2.90
5710 5908 2.430465 GATGAAGTTCAGCAGGAGCAA 58.570 47.619 16.06 0.00 45.49 3.91
5757 5955 5.178252 CCATGACTCATATCCGTTGTTGATC 59.822 44.000 0.00 0.00 0.00 2.92
5811 6009 6.833933 GGTAAAGATGGACAATAACCCAGAAT 59.166 38.462 0.00 0.00 35.67 2.40
5820 6018 4.472108 AGGAACGGGTAAAGATGGACAATA 59.528 41.667 0.00 0.00 0.00 1.90
5913 6111 0.033228 CCCACAGGAGCGAGATGATC 59.967 60.000 0.00 0.00 33.47 2.92
6024 6229 7.563888 AAATTACTCCACATGATGACTGATG 57.436 36.000 0.00 0.00 0.00 3.07
6261 6481 1.146637 CTGACTGACTGACTTGCTGC 58.853 55.000 0.00 0.00 0.00 5.25
6268 6488 2.621055 ACTGACTGACTGACTGACTGAC 59.379 50.000 0.00 0.00 0.00 3.51
6269 6489 2.937519 ACTGACTGACTGACTGACTGA 58.062 47.619 0.00 0.00 0.00 3.41
6270 6490 3.551863 GGAACTGACTGACTGACTGACTG 60.552 52.174 0.00 0.00 0.00 3.51
6271 6491 2.625790 GGAACTGACTGACTGACTGACT 59.374 50.000 0.00 0.00 0.00 3.41
6272 6492 2.362397 TGGAACTGACTGACTGACTGAC 59.638 50.000 0.00 0.00 0.00 3.51
6273 6493 2.625314 CTGGAACTGACTGACTGACTGA 59.375 50.000 0.00 0.00 0.00 3.41
6274 6494 2.363680 ACTGGAACTGACTGACTGACTG 59.636 50.000 0.00 0.00 0.00 3.51
6316 6543 4.558860 GTCAACAAATAAAGAATCGCTGGC 59.441 41.667 0.00 0.00 0.00 4.85
6404 6632 0.767375 ACATCCTTCGGGCATAGCAT 59.233 50.000 0.00 0.00 34.44 3.79
6534 6764 3.922240 CAGGCATTTTTCCATGTTCGAAG 59.078 43.478 0.00 0.00 0.00 3.79
6541 6771 1.668751 GCATGCAGGCATTTTTCCATG 59.331 47.619 20.11 0.00 33.90 3.66
6579 6809 6.327626 AGAAGATAGCAAGCTAACAATCCCTA 59.672 38.462 5.81 0.00 31.73 3.53
6592 6822 8.635765 ACTAGATAGAGGAAGAAGATAGCAAG 57.364 38.462 0.00 0.00 0.00 4.01
6611 6854 9.087871 AGATGATGCATACAACTAGAACTAGAT 57.912 33.333 14.64 1.21 36.97 1.98
6643 6897 5.003160 CCACTGGAAATCTGTGTGTCATTA 58.997 41.667 0.00 0.00 41.79 1.90
6644 6898 3.822735 CCACTGGAAATCTGTGTGTCATT 59.177 43.478 0.00 0.00 41.79 2.57
6665 6919 3.450578 TCAGTTTTATGATACCGACGCC 58.549 45.455 0.00 0.00 0.00 5.68
6667 6921 6.530534 AGACTTTCAGTTTTATGATACCGACG 59.469 38.462 0.00 0.00 0.00 5.12
6670 6924 6.456988 GGCAGACTTTCAGTTTTATGATACCG 60.457 42.308 0.00 0.00 0.00 4.02
6716 6982 0.184451 AGCTATGGCATGGTCCCTTG 59.816 55.000 10.98 0.00 41.70 3.61
6774 7050 0.965363 ACCATGTGGGCGGAATTCAC 60.965 55.000 7.93 0.00 42.05 3.18
6833 7109 3.714487 TTAAGCATGGCCGGCTCCC 62.714 63.158 28.56 10.74 41.66 4.30
6834 7110 2.124320 TTAAGCATGGCCGGCTCC 60.124 61.111 28.56 11.61 41.66 4.70
6835 7111 1.452108 AGTTAAGCATGGCCGGCTC 60.452 57.895 28.56 17.27 41.66 4.70
6836 7112 1.750399 CAGTTAAGCATGGCCGGCT 60.750 57.895 28.56 15.43 45.15 5.52
6837 7113 1.595093 AACAGTTAAGCATGGCCGGC 61.595 55.000 21.18 21.18 0.00 6.13
6838 7114 1.745232 TAACAGTTAAGCATGGCCGG 58.255 50.000 0.00 0.00 0.00 6.13
6839 7115 3.405170 CTTAACAGTTAAGCATGGCCG 57.595 47.619 18.17 0.00 36.54 6.13
6847 7123 5.844396 GCTGTAACAACGCTTAACAGTTAAG 59.156 40.000 23.77 23.77 44.25 1.85
6848 7124 5.293814 TGCTGTAACAACGCTTAACAGTTAA 59.706 36.000 5.61 5.61 0.00 2.01
6849 7125 4.809958 TGCTGTAACAACGCTTAACAGTTA 59.190 37.500 0.00 0.00 0.00 2.24
6850 7126 3.623960 TGCTGTAACAACGCTTAACAGTT 59.376 39.130 0.00 0.00 0.00 3.16
6851 7127 3.199677 TGCTGTAACAACGCTTAACAGT 58.800 40.909 0.00 0.00 0.00 3.55
6852 7128 3.247648 ACTGCTGTAACAACGCTTAACAG 59.752 43.478 0.00 0.00 0.00 3.16
6853 7129 3.001838 CACTGCTGTAACAACGCTTAACA 59.998 43.478 0.00 0.00 0.00 2.41
6854 7130 3.541711 CACTGCTGTAACAACGCTTAAC 58.458 45.455 0.00 0.00 0.00 2.01
6855 7131 2.032377 GCACTGCTGTAACAACGCTTAA 60.032 45.455 0.00 0.00 0.00 1.85
6856 7132 1.529438 GCACTGCTGTAACAACGCTTA 59.471 47.619 0.00 0.00 0.00 3.09
6857 7133 0.307760 GCACTGCTGTAACAACGCTT 59.692 50.000 0.00 0.00 0.00 4.68
6858 7134 1.507141 GGCACTGCTGTAACAACGCT 61.507 55.000 0.00 0.00 0.00 5.07
6859 7135 1.082104 GGCACTGCTGTAACAACGC 60.082 57.895 0.00 0.00 0.00 4.84
6860 7136 0.235665 CTGGCACTGCTGTAACAACG 59.764 55.000 0.00 0.00 0.00 4.10
6861 7137 1.002468 CACTGGCACTGCTGTAACAAC 60.002 52.381 0.00 0.00 0.00 3.32
6862 7138 1.308047 CACTGGCACTGCTGTAACAA 58.692 50.000 0.00 0.00 0.00 2.83
6863 7139 1.165907 GCACTGGCACTGCTGTAACA 61.166 55.000 11.26 0.00 40.72 2.41
6864 7140 1.576421 GCACTGGCACTGCTGTAAC 59.424 57.895 11.26 0.00 40.72 2.50
6865 7141 4.063529 GCACTGGCACTGCTGTAA 57.936 55.556 11.26 0.00 40.72 2.41
6875 7151 3.121030 CGCCTACACTGCACTGGC 61.121 66.667 0.00 0.00 40.14 4.85
6876 7152 3.121030 GCGCCTACACTGCACTGG 61.121 66.667 0.00 0.00 0.00 4.00
6877 7153 2.357396 TGCGCCTACACTGCACTG 60.357 61.111 4.18 0.00 32.86 3.66
6878 7154 2.047844 CTGCGCCTACACTGCACT 60.048 61.111 4.18 0.00 34.42 4.40
6879 7155 3.121030 CCTGCGCCTACACTGCAC 61.121 66.667 4.18 0.00 34.42 4.57
6880 7156 4.393155 CCCTGCGCCTACACTGCA 62.393 66.667 4.18 0.00 37.07 4.41
6882 7158 4.393155 TGCCCTGCGCCTACACTG 62.393 66.667 4.18 0.00 36.24 3.66
6883 7159 4.087892 CTGCCCTGCGCCTACACT 62.088 66.667 4.18 0.00 36.24 3.55
6901 7177 3.866582 GATCCGGCTCCCACTGGG 61.867 72.222 7.97 7.97 46.11 4.45
6902 7178 3.866582 GGATCCGGCTCCCACTGG 61.867 72.222 13.69 0.00 37.44 4.00
6914 7190 3.813724 CAGGTGGCCAGGGGATCC 61.814 72.222 5.11 1.92 0.00 3.36
6915 7191 2.692368 TCAGGTGGCCAGGGGATC 60.692 66.667 5.11 0.00 0.00 3.36
6916 7192 3.017581 GTCAGGTGGCCAGGGGAT 61.018 66.667 5.11 0.00 0.00 3.85
6919 7195 3.953775 AACGTCAGGTGGCCAGGG 61.954 66.667 5.11 0.00 0.00 4.45
6920 7196 2.669569 CAACGTCAGGTGGCCAGG 60.670 66.667 5.11 0.00 0.00 4.45
6926 7202 0.880278 CAGTGGTCCAACGTCAGGTG 60.880 60.000 0.00 0.00 34.07 4.00
6927 7203 1.046472 TCAGTGGTCCAACGTCAGGT 61.046 55.000 0.00 0.00 0.00 4.00
6928 7204 0.600255 GTCAGTGGTCCAACGTCAGG 60.600 60.000 0.00 0.00 0.00 3.86
6929 7205 0.939577 CGTCAGTGGTCCAACGTCAG 60.940 60.000 6.44 0.00 0.00 3.51
6930 7206 1.066752 CGTCAGTGGTCCAACGTCA 59.933 57.895 6.44 0.00 0.00 4.35
6931 7207 2.308039 GCGTCAGTGGTCCAACGTC 61.308 63.158 14.43 5.26 37.45 4.34
6932 7208 2.279918 GCGTCAGTGGTCCAACGT 60.280 61.111 14.43 0.00 37.45 3.99
6933 7209 3.403057 CGCGTCAGTGGTCCAACG 61.403 66.667 9.75 9.75 38.13 4.10
6934 7210 2.279918 ACGCGTCAGTGGTCCAAC 60.280 61.111 5.58 0.00 0.00 3.77
6935 7211 2.279851 CACGCGTCAGTGGTCCAA 60.280 61.111 9.86 0.00 38.40 3.53
6953 7229 4.368543 GACGTGTGGACCCGGACC 62.369 72.222 0.73 6.89 0.00 4.46
6954 7230 3.569049 CTGACGTGTGGACCCGGAC 62.569 68.421 0.73 0.00 0.00 4.79
6955 7231 3.299977 CTGACGTGTGGACCCGGA 61.300 66.667 0.73 0.00 0.00 5.14
6958 7234 3.916392 CTCGCTGACGTGTGGACCC 62.916 68.421 0.00 0.00 41.18 4.46
6959 7235 2.430921 CTCGCTGACGTGTGGACC 60.431 66.667 0.00 0.00 41.18 4.46
6960 7236 2.335369 ACTCGCTGACGTGTGGAC 59.665 61.111 0.00 0.00 43.76 4.02
6973 7249 4.746951 TGACGTACGGCGCACTCG 62.747 66.667 21.06 6.32 46.11 4.18
6974 7250 2.874780 CTGACGTACGGCGCACTC 60.875 66.667 21.06 7.29 46.11 3.51
6975 7251 3.324099 CTCTGACGTACGGCGCACT 62.324 63.158 21.06 0.00 46.11 4.40
6976 7252 2.874780 CTCTGACGTACGGCGCAC 60.875 66.667 21.06 2.50 46.11 5.34
6977 7253 4.111016 CCTCTGACGTACGGCGCA 62.111 66.667 21.06 13.22 46.11 6.09
6978 7254 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
6980 7256 2.102553 GCTCCTCTGACGTACGGC 59.897 66.667 21.06 18.72 0.00 5.68
6981 7257 1.429825 CAGCTCCTCTGACGTACGG 59.570 63.158 21.06 1.50 45.72 4.02
6982 7258 1.226435 GCAGCTCCTCTGACGTACG 60.226 63.158 15.01 15.01 45.72 3.67
6983 7259 1.226435 CGCAGCTCCTCTGACGTAC 60.226 63.158 0.00 0.00 45.72 3.67
6984 7260 1.645704 GACGCAGCTCCTCTGACGTA 61.646 60.000 11.86 0.00 46.96 3.57
6985 7261 2.986413 ACGCAGCTCCTCTGACGT 60.986 61.111 0.00 0.00 45.72 4.34
6986 7262 2.202544 GACGCAGCTCCTCTGACG 60.203 66.667 0.00 2.37 45.72 4.35
6987 7263 2.183046 GGACGCAGCTCCTCTGAC 59.817 66.667 4.17 0.00 45.72 3.51
6988 7264 2.283173 TGGACGCAGCTCCTCTGA 60.283 61.111 10.99 0.00 45.72 3.27
6989 7265 2.183811 CTGGACGCAGCTCCTCTG 59.816 66.667 10.99 0.00 45.62 3.35
6990 7266 3.768922 GCTGGACGCAGCTCCTCT 61.769 66.667 7.67 0.00 44.31 3.69
6991 7267 4.828925 GGCTGGACGCAGCTCCTC 62.829 72.222 13.63 4.66 46.69 3.71
7027 7303 2.663520 TACGTGCCGTTGTGCCTG 60.664 61.111 0.00 0.00 41.54 4.85
7028 7304 2.663852 GTACGTGCCGTTGTGCCT 60.664 61.111 0.00 0.00 41.54 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.