Multiple sequence alignment - TraesCS4A01G354600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G354600 chr4A 100.000 3215 0 0 1 3215 628952945 628949731 0.000000e+00 5938
1 TraesCS4A01G354600 chr5B 94.646 2652 117 15 1 2637 681040348 681042989 0.000000e+00 4087
2 TraesCS4A01G354600 chr5B 86.486 370 16 16 2872 3212 681043224 681043588 3.030000e-100 375
3 TraesCS4A01G354600 chr5B 92.271 207 7 6 2639 2844 681043027 681043225 5.250000e-73 285
4 TraesCS4A01G354600 chr2A 97.776 1439 29 2 1 1436 481139226 481140664 0.000000e+00 2477
5 TraesCS4A01G354600 chr4B 81.625 1268 202 26 411 1665 673098127 673099376 0.000000e+00 1022
6 TraesCS4A01G354600 chr4B 85.050 903 83 29 1499 2384 665406111 665406978 0.000000e+00 872
7 TraesCS4A01G354600 chr4B 76.751 1299 256 32 389 1661 621946753 621945475 0.000000e+00 684
8 TraesCS4A01G354600 chr4B 75.971 1261 241 46 411 1661 622782110 622783318 7.680000e-166 593
9 TraesCS4A01G354600 chrUn 79.558 1492 251 47 330 1792 99103279 99101813 0.000000e+00 1016
10 TraesCS4A01G354600 chrUn 85.911 653 59 12 1725 2359 108527727 108527090 0.000000e+00 665
11 TraesCS4A01G354600 chr5A 81.309 1268 212 21 411 1663 707058407 707057150 0.000000e+00 1005
12 TraesCS4A01G354600 chr5A 77.276 1263 242 33 426 1661 667711417 667710173 0.000000e+00 701
13 TraesCS4A01G354600 chr5A 79.810 525 93 11 1872 2393 707056639 707056125 1.410000e-98 370
14 TraesCS4A01G354600 chr7A 80.606 1320 218 28 369 1661 272951648 272952956 0.000000e+00 985
15 TraesCS4A01G354600 chr7A 76.536 537 98 20 1873 2393 272953113 272953637 5.290000e-68 268
16 TraesCS4A01G354600 chr7D 80.591 1319 217 30 369 1661 254382476 254383781 0.000000e+00 981
17 TraesCS4A01G354600 chr7D 76.723 537 97 20 1873 2393 254383938 254384462 1.140000e-69 274
18 TraesCS4A01G354600 chr7B 80.303 1320 221 29 369 1661 231707260 231708567 0.000000e+00 961
19 TraesCS4A01G354600 chr7B 76.820 522 93 19 1887 2393 231708739 231709247 5.290000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G354600 chr4A 628949731 628952945 3214 True 5938.000000 5938 100.000000 1 3215 1 chr4A.!!$R1 3214
1 TraesCS4A01G354600 chr5B 681040348 681043588 3240 False 1582.333333 4087 91.134333 1 3212 3 chr5B.!!$F1 3211
2 TraesCS4A01G354600 chr2A 481139226 481140664 1438 False 2477.000000 2477 97.776000 1 1436 1 chr2A.!!$F1 1435
3 TraesCS4A01G354600 chr4B 673098127 673099376 1249 False 1022.000000 1022 81.625000 411 1665 1 chr4B.!!$F3 1254
4 TraesCS4A01G354600 chr4B 665406111 665406978 867 False 872.000000 872 85.050000 1499 2384 1 chr4B.!!$F2 885
5 TraesCS4A01G354600 chr4B 621945475 621946753 1278 True 684.000000 684 76.751000 389 1661 1 chr4B.!!$R1 1272
6 TraesCS4A01G354600 chr4B 622782110 622783318 1208 False 593.000000 593 75.971000 411 1661 1 chr4B.!!$F1 1250
7 TraesCS4A01G354600 chrUn 99101813 99103279 1466 True 1016.000000 1016 79.558000 330 1792 1 chrUn.!!$R1 1462
8 TraesCS4A01G354600 chrUn 108527090 108527727 637 True 665.000000 665 85.911000 1725 2359 1 chrUn.!!$R2 634
9 TraesCS4A01G354600 chr5A 667710173 667711417 1244 True 701.000000 701 77.276000 426 1661 1 chr5A.!!$R1 1235
10 TraesCS4A01G354600 chr5A 707056125 707058407 2282 True 687.500000 1005 80.559500 411 2393 2 chr5A.!!$R2 1982
11 TraesCS4A01G354600 chr7A 272951648 272953637 1989 False 626.500000 985 78.571000 369 2393 2 chr7A.!!$F1 2024
12 TraesCS4A01G354600 chr7D 254382476 254384462 1986 False 627.500000 981 78.657000 369 2393 2 chr7D.!!$F1 2024
13 TraesCS4A01G354600 chr7B 231707260 231709247 1987 False 614.500000 961 78.561500 369 2393 2 chr7B.!!$F1 2024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 894 2.742053 GCGCCAAACACAGAAGATCTAA 59.258 45.455 0.0 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2847 3316 0.459411 GAAAGCGGCTGAGTCTCTCC 60.459 60.0 1.81 1.85 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 320 6.982852 TGATAGTAGCATAGAAGTACTTGCC 58.017 40.000 14.14 0.00 35.14 4.52
870 894 2.742053 GCGCCAAACACAGAAGATCTAA 59.258 45.455 0.00 0.00 0.00 2.10
1279 1314 1.845266 CAGCAGGCACATACTCTACG 58.155 55.000 0.00 0.00 0.00 3.51
1456 1496 5.006261 CCAAGTGTTCATATTCGCGACAATA 59.994 40.000 9.15 5.48 0.00 1.90
1504 1544 3.242518 GACCGCCAATAAGTTCTTTTGC 58.757 45.455 0.00 0.00 0.00 3.68
1576 1617 0.249699 TGACAGTGGCACTAACACCG 60.250 55.000 21.59 9.40 39.63 4.94
1619 1660 5.698545 GGATTGTCCTTCCTTATCTTCATCG 59.301 44.000 0.00 0.00 32.53 3.84
1637 1678 4.020218 TCATCGTTTGGAACATCTTCTCCT 60.020 41.667 0.00 0.00 39.30 3.69
1649 1690 4.163649 ACATCTTCTCCTGCTTCATGATCA 59.836 41.667 0.00 0.00 0.00 2.92
1688 1734 3.634504 TCGCTCTACCAACTATTACCCA 58.365 45.455 0.00 0.00 0.00 4.51
1689 1735 3.635373 TCGCTCTACCAACTATTACCCAG 59.365 47.826 0.00 0.00 0.00 4.45
1694 1740 1.222567 CCAACTATTACCCAGCCCCT 58.777 55.000 0.00 0.00 0.00 4.79
1697 1743 0.648301 ACTATTACCCAGCCCCTCCT 59.352 55.000 0.00 0.00 0.00 3.69
1699 1745 0.104620 TATTACCCAGCCCCTCCTCC 60.105 60.000 0.00 0.00 0.00 4.30
1700 1746 1.914496 ATTACCCAGCCCCTCCTCCT 61.914 60.000 0.00 0.00 0.00 3.69
1918 2325 6.006449 AGGATAGATTGTGCATGATTAACCC 58.994 40.000 0.00 0.00 0.00 4.11
1939 2346 4.500545 CCCGATGAACAAAAACAATGTGGA 60.501 41.667 0.00 0.00 0.00 4.02
1940 2347 4.444056 CCGATGAACAAAAACAATGTGGAC 59.556 41.667 0.00 0.00 0.00 4.02
1953 2376 4.662179 ACAATGTGGACATAGATGATCCCT 59.338 41.667 0.00 0.00 35.10 4.20
2128 2551 3.508793 CGAGGACCACTACTTCAACCTTA 59.491 47.826 0.00 0.00 0.00 2.69
2215 2638 5.932619 TCTCAATTTCCAACGGAGATAGA 57.067 39.130 0.00 0.00 31.21 1.98
2446 2875 8.352942 CAGCCTTGTATTAAGTCAAAACTCTTT 58.647 33.333 0.00 0.00 33.48 2.52
2551 2980 9.832445 ATTTCCACTATGAATAACTGACGTTAT 57.168 29.630 0.00 0.00 45.73 1.89
2563 2992 9.464714 AATAACTGACGTTATAGACATTAGCAG 57.535 33.333 0.00 0.00 43.65 4.24
2567 2996 8.847196 ACTGACGTTATAGACATTAGCAGATAA 58.153 33.333 0.00 0.00 0.00 1.75
2568 2997 9.119329 CTGACGTTATAGACATTAGCAGATAAC 57.881 37.037 0.00 0.00 0.00 1.89
2587 3016 9.438291 CAGATAACTTCTGTAACTTTTGTTGTG 57.562 33.333 0.00 0.00 45.79 3.33
2709 3178 4.683781 TCACAGTTGTTGCAAAACTTGTTC 59.316 37.500 18.37 0.00 35.70 3.18
2725 3194 4.989168 ACTTGTTCTGAAACGTAGTCATCC 59.011 41.667 2.59 0.00 45.00 3.51
2749 3218 7.658167 TCCGATCACACTTGAAAATTGTAAGTA 59.342 33.333 0.00 0.00 37.65 2.24
2778 3247 3.002862 TCACATAAGTCAACAAACACGCC 59.997 43.478 0.00 0.00 0.00 5.68
2796 3265 2.419673 CGCCATTCAGACAAGCACATAA 59.580 45.455 0.00 0.00 0.00 1.90
2797 3266 3.486375 CGCCATTCAGACAAGCACATAAG 60.486 47.826 0.00 0.00 0.00 1.73
2798 3267 3.733077 GCCATTCAGACAAGCACATAAGC 60.733 47.826 0.00 0.00 0.00 3.09
2799 3268 3.441222 CCATTCAGACAAGCACATAAGCA 59.559 43.478 0.00 0.00 36.85 3.91
2800 3269 4.409570 CATTCAGACAAGCACATAAGCAC 58.590 43.478 0.00 0.00 36.85 4.40
2801 3270 3.124578 TCAGACAAGCACATAAGCACA 57.875 42.857 0.00 0.00 36.85 4.57
2802 3271 3.678289 TCAGACAAGCACATAAGCACAT 58.322 40.909 0.00 0.00 36.85 3.21
2803 3272 4.831107 TCAGACAAGCACATAAGCACATA 58.169 39.130 0.00 0.00 36.85 2.29
2848 3317 8.519799 AACAATAATTAACACCAGATACAGGG 57.480 34.615 0.00 0.00 0.00 4.45
2849 3318 7.867921 ACAATAATTAACACCAGATACAGGGA 58.132 34.615 0.00 0.00 0.00 4.20
2850 3319 7.993183 ACAATAATTAACACCAGATACAGGGAG 59.007 37.037 0.00 0.00 0.00 4.30
2851 3320 7.931015 ATAATTAACACCAGATACAGGGAGA 57.069 36.000 0.00 0.00 0.00 3.71
2852 3321 5.878406 ATTAACACCAGATACAGGGAGAG 57.122 43.478 0.00 0.00 0.00 3.20
2853 3322 3.474798 AACACCAGATACAGGGAGAGA 57.525 47.619 0.00 0.00 0.00 3.10
2854 3323 2.741145 ACACCAGATACAGGGAGAGAC 58.259 52.381 0.00 0.00 0.00 3.36
2855 3324 2.313342 ACACCAGATACAGGGAGAGACT 59.687 50.000 0.00 0.00 0.00 3.24
2856 3325 2.955660 CACCAGATACAGGGAGAGACTC 59.044 54.545 0.00 0.00 0.00 3.36
2857 3326 2.583101 ACCAGATACAGGGAGAGACTCA 59.417 50.000 5.02 0.00 31.08 3.41
2858 3327 3.221771 CCAGATACAGGGAGAGACTCAG 58.778 54.545 5.02 0.00 31.08 3.35
2859 3328 2.622942 CAGATACAGGGAGAGACTCAGC 59.377 54.545 5.02 0.00 31.08 4.26
2860 3329 1.960689 GATACAGGGAGAGACTCAGCC 59.039 57.143 5.02 5.57 31.08 4.85
2861 3330 0.394488 TACAGGGAGAGACTCAGCCG 60.394 60.000 5.02 0.00 31.08 5.52
2862 3331 2.757917 AGGGAGAGACTCAGCCGC 60.758 66.667 5.02 2.26 31.08 6.53
2863 3332 2.757917 GGGAGAGACTCAGCCGCT 60.758 66.667 5.02 0.00 31.08 5.52
2864 3333 2.355193 GGGAGAGACTCAGCCGCTT 61.355 63.158 5.02 0.00 31.08 4.68
2865 3334 1.594310 GGAGAGACTCAGCCGCTTT 59.406 57.895 5.02 0.00 31.08 3.51
2866 3335 0.459411 GGAGAGACTCAGCCGCTTTC 60.459 60.000 5.02 0.00 31.08 2.62
2867 3336 0.530288 GAGAGACTCAGCCGCTTTCT 59.470 55.000 5.02 0.00 0.00 2.52
2868 3337 0.530288 AGAGACTCAGCCGCTTTCTC 59.470 55.000 5.02 12.66 34.14 2.87
2869 3338 0.530288 GAGACTCAGCCGCTTTCTCT 59.470 55.000 13.07 3.95 31.72 3.10
2870 3339 0.972883 AGACTCAGCCGCTTTCTCTT 59.027 50.000 0.00 0.00 0.00 2.85
2871 3340 1.346068 AGACTCAGCCGCTTTCTCTTT 59.654 47.619 0.00 0.00 0.00 2.52
2872 3341 2.563179 AGACTCAGCCGCTTTCTCTTTA 59.437 45.455 0.00 0.00 0.00 1.85
2873 3342 3.196685 AGACTCAGCCGCTTTCTCTTTAT 59.803 43.478 0.00 0.00 0.00 1.40
2874 3343 3.935828 GACTCAGCCGCTTTCTCTTTATT 59.064 43.478 0.00 0.00 0.00 1.40
2875 3344 5.086104 ACTCAGCCGCTTTCTCTTTATTA 57.914 39.130 0.00 0.00 0.00 0.98
2876 3345 4.870991 ACTCAGCCGCTTTCTCTTTATTAC 59.129 41.667 0.00 0.00 0.00 1.89
2923 3392 1.470098 CTCATTGCCTCTTGGTTTCCG 59.530 52.381 0.00 0.00 35.27 4.30
2928 3397 2.033194 CCTCTTGGTTTCCGTCGCC 61.033 63.158 0.00 0.00 0.00 5.54
2937 3406 0.035915 TTTCCGTCGCCAATCCATCA 60.036 50.000 0.00 0.00 0.00 3.07
2939 3408 0.742990 TCCGTCGCCAATCCATCAAC 60.743 55.000 0.00 0.00 0.00 3.18
2952 3421 5.841957 ATCCATCAACATAGGAAAGCAAC 57.158 39.130 0.00 0.00 34.62 4.17
3033 3526 1.667724 CACGAAGTTCCATCCATCTGC 59.332 52.381 0.00 0.00 41.61 4.26
3042 3535 2.506644 TCCATCCATCTGCAGATCACAA 59.493 45.455 26.44 12.10 31.21 3.33
3043 3536 2.617308 CCATCCATCTGCAGATCACAAC 59.383 50.000 26.44 0.00 31.21 3.32
3051 3544 0.883153 GCAGATCACAACCATGCACA 59.117 50.000 0.00 0.00 36.88 4.57
3127 3620 0.244450 CGCCATGGTGCAACTCAATT 59.756 50.000 13.39 0.00 36.74 2.32
3160 3657 0.179076 CGCATCCATGTACCTCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
3212 3709 5.917541 TCGTAAGCTCTTGTAAACCTTTG 57.082 39.130 0.00 0.00 37.18 2.77
3213 3710 5.362263 TCGTAAGCTCTTGTAAACCTTTGT 58.638 37.500 0.00 0.00 37.18 2.83
3214 3711 5.235616 TCGTAAGCTCTTGTAAACCTTTGTG 59.764 40.000 0.00 0.00 37.18 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.066892 TCAGTTCTTGCTTGTATTTTGTAGAAT 57.933 29.630 0.00 0.00 0.00 2.40
57 58 8.445275 TTCAGTTCTTGCTTGTATTTTGTAGA 57.555 30.769 0.00 0.00 0.00 2.59
78 79 7.824289 TGATCTTCAAACCACCTAACTATTCAG 59.176 37.037 0.00 0.00 0.00 3.02
258 259 3.119137 GGAAATGTGAGGGCCAATTACAC 60.119 47.826 6.18 8.45 0.00 2.90
319 320 8.472683 TGTAAAAGGACACTTGTTTTTCATTG 57.527 30.769 0.00 0.00 36.93 2.82
574 580 3.583086 CCGGGGATATCCTGTGTAAAGAT 59.417 47.826 21.18 0.00 40.38 2.40
1456 1496 7.805163 TCTGGAATCCAATCATTGTGTATACT 58.195 34.615 2.61 0.00 30.80 2.12
1504 1544 6.595716 AGCTTAGCACCATGTAAAGTAGAAAG 59.404 38.462 7.07 0.00 0.00 2.62
1576 1617 6.541641 ACAATCCAGAAGCTATCTCAATGTTC 59.458 38.462 0.00 0.00 35.73 3.18
1619 1660 3.416156 AGCAGGAGAAGATGTTCCAAAC 58.584 45.455 0.00 0.00 35.88 2.93
1637 1678 3.773667 ACCTCTCTTCTGATCATGAAGCA 59.226 43.478 20.93 0.00 40.31 3.91
1669 1715 3.494573 GGCTGGGTAATAGTTGGTAGAGC 60.495 52.174 0.00 0.00 0.00 4.09
1688 1734 4.731929 TGAAAAATATTAGGAGGAGGGGCT 59.268 41.667 0.00 0.00 0.00 5.19
1689 1735 4.827835 GTGAAAAATATTAGGAGGAGGGGC 59.172 45.833 0.00 0.00 0.00 5.80
1733 2121 5.015178 TGACCCTAATTTCCCATGTTCTCTT 59.985 40.000 0.00 0.00 0.00 2.85
1819 2214 3.976306 GCAACATTGGTTTGTAACGGTAC 59.024 43.478 2.90 2.90 34.21 3.34
1918 2325 5.039984 TGTCCACATTGTTTTTGTTCATCG 58.960 37.500 0.00 0.00 0.00 3.84
1939 2346 3.645212 CACCAGACAGGGATCATCTATGT 59.355 47.826 0.00 0.00 43.89 2.29
1940 2347 3.007723 CCACCAGACAGGGATCATCTATG 59.992 52.174 0.00 0.00 43.89 2.23
1953 2376 2.146724 CACCCACCTCCACCAGACA 61.147 63.158 0.00 0.00 0.00 3.41
2215 2638 7.569774 CGCATGACAACATTGAATTGATTTGTT 60.570 33.333 0.00 0.00 34.15 2.83
2421 2850 8.465273 AAAGAGTTTTGACTTAATACAAGGCT 57.535 30.769 0.00 0.00 0.00 4.58
2446 2875 4.356405 TTCAGCAGACTTGATCAAGGAA 57.644 40.909 33.11 23.27 42.53 3.36
2542 2971 9.119329 GTTATCTGCTAATGTCTATAACGTCAG 57.881 37.037 0.00 0.00 0.00 3.51
2631 3060 2.681848 CTCTGCATCACCACTGAAATCC 59.318 50.000 0.00 0.00 0.00 3.01
2632 3061 2.681848 CCTCTGCATCACCACTGAAATC 59.318 50.000 0.00 0.00 0.00 2.17
2633 3062 2.306805 TCCTCTGCATCACCACTGAAAT 59.693 45.455 0.00 0.00 0.00 2.17
2634 3063 1.699083 TCCTCTGCATCACCACTGAAA 59.301 47.619 0.00 0.00 0.00 2.69
2635 3064 1.351076 TCCTCTGCATCACCACTGAA 58.649 50.000 0.00 0.00 0.00 3.02
2636 3065 1.351076 TTCCTCTGCATCACCACTGA 58.649 50.000 0.00 0.00 0.00 3.41
2637 3066 2.082231 CTTTCCTCTGCATCACCACTG 58.918 52.381 0.00 0.00 0.00 3.66
2709 3178 3.791887 GTGATCGGATGACTACGTTTCAG 59.208 47.826 0.00 0.00 0.00 3.02
2725 3194 8.495949 ACTACTTACAATTTTCAAGTGTGATCG 58.504 33.333 0.00 0.00 40.31 3.69
2749 3218 8.774586 GTGTTTGTTGACTTATGTGATAGAACT 58.225 33.333 0.00 0.00 0.00 3.01
2763 3232 2.020720 TGAATGGCGTGTTTGTTGACT 58.979 42.857 0.00 0.00 0.00 3.41
2765 3234 2.032799 GTCTGAATGGCGTGTTTGTTGA 59.967 45.455 0.00 0.00 0.00 3.18
2778 3247 4.083164 TGTGCTTATGTGCTTGTCTGAATG 60.083 41.667 0.00 0.00 0.00 2.67
2796 3265 2.902523 CTCATGACTGTGCTATGTGCT 58.097 47.619 0.00 0.00 43.37 4.40
2797 3266 1.329906 GCTCATGACTGTGCTATGTGC 59.670 52.381 0.00 0.00 38.53 4.57
2798 3267 2.624636 TGCTCATGACTGTGCTATGTG 58.375 47.619 6.27 0.00 41.39 3.21
2799 3268 3.555527 ATGCTCATGACTGTGCTATGT 57.444 42.857 6.27 0.00 41.39 2.29
2800 3269 7.172019 TGTTATTATGCTCATGACTGTGCTATG 59.828 37.037 6.27 0.00 41.39 2.23
2801 3270 7.219322 TGTTATTATGCTCATGACTGTGCTAT 58.781 34.615 6.27 2.02 41.39 2.97
2802 3271 6.581712 TGTTATTATGCTCATGACTGTGCTA 58.418 36.000 6.27 0.00 41.39 3.49
2803 3272 5.430886 TGTTATTATGCTCATGACTGTGCT 58.569 37.500 6.27 0.00 41.39 4.40
2844 3313 3.074999 GCGGCTGAGTCTCTCCCTG 62.075 68.421 0.00 0.00 0.00 4.45
2845 3314 2.757917 GCGGCTGAGTCTCTCCCT 60.758 66.667 0.00 0.00 0.00 4.20
2846 3315 1.893919 AAAGCGGCTGAGTCTCTCCC 61.894 60.000 1.81 0.68 0.00 4.30
2847 3316 0.459411 GAAAGCGGCTGAGTCTCTCC 60.459 60.000 1.81 1.85 0.00 3.71
2848 3317 0.530288 AGAAAGCGGCTGAGTCTCTC 59.470 55.000 1.81 0.00 0.00 3.20
2849 3318 0.530288 GAGAAAGCGGCTGAGTCTCT 59.470 55.000 21.97 12.37 33.45 3.10
2850 3319 0.530288 AGAGAAAGCGGCTGAGTCTC 59.470 55.000 21.84 21.84 35.91 3.36
2851 3320 0.972883 AAGAGAAAGCGGCTGAGTCT 59.027 50.000 1.81 7.05 0.00 3.24
2852 3321 1.802069 AAAGAGAAAGCGGCTGAGTC 58.198 50.000 1.81 1.59 0.00 3.36
2853 3322 3.618690 ATAAAGAGAAAGCGGCTGAGT 57.381 42.857 1.81 0.00 0.00 3.41
2854 3323 4.870426 TGTAATAAAGAGAAAGCGGCTGAG 59.130 41.667 1.81 0.00 0.00 3.35
2855 3324 4.827692 TGTAATAAAGAGAAAGCGGCTGA 58.172 39.130 1.81 0.00 0.00 4.26
2856 3325 5.545658 TTGTAATAAAGAGAAAGCGGCTG 57.454 39.130 1.81 0.00 0.00 4.85
2857 3326 6.569179 TTTTGTAATAAAGAGAAAGCGGCT 57.431 33.333 0.00 0.00 0.00 5.52
2858 3327 7.755373 AGATTTTTGTAATAAAGAGAAAGCGGC 59.245 33.333 0.00 0.00 0.00 6.53
2859 3328 9.626045 AAGATTTTTGTAATAAAGAGAAAGCGG 57.374 29.630 0.00 0.00 0.00 5.52
2872 3341 9.744468 GTCTTGTACACCAAAGATTTTTGTAAT 57.256 29.630 7.83 0.00 41.68 1.89
2873 3342 8.962679 AGTCTTGTACACCAAAGATTTTTGTAA 58.037 29.630 7.83 0.00 41.68 2.41
2874 3343 8.514330 AGTCTTGTACACCAAAGATTTTTGTA 57.486 30.769 7.83 0.00 41.68 2.41
2875 3344 7.404671 AGTCTTGTACACCAAAGATTTTTGT 57.595 32.000 7.83 0.00 41.68 2.83
2876 3345 8.594687 CAAAGTCTTGTACACCAAAGATTTTTG 58.405 33.333 11.12 12.90 42.66 2.44
2923 3392 2.549754 CCTATGTTGATGGATTGGCGAC 59.450 50.000 0.00 0.00 0.00 5.19
2928 3397 5.840243 TGCTTTCCTATGTTGATGGATTG 57.160 39.130 0.00 0.00 0.00 2.67
2937 3406 6.039382 GGGATTTATCGTTGCTTTCCTATGTT 59.961 38.462 0.00 0.00 0.00 2.71
2939 3408 5.530915 TGGGATTTATCGTTGCTTTCCTATG 59.469 40.000 0.00 0.00 0.00 2.23
2952 3421 5.749596 TGTTTGTATGCTGGGATTTATCG 57.250 39.130 0.00 0.00 0.00 2.92
3033 3526 2.490509 ACATGTGCATGGTTGTGATCTG 59.509 45.455 15.52 0.00 42.91 2.90
3042 3535 0.241749 CGCAAGAACATGTGCATGGT 59.758 50.000 10.97 9.66 42.34 3.55
3043 3536 3.024423 CGCAAGAACATGTGCATGG 57.976 52.632 10.97 0.00 40.94 3.66
3114 3607 6.374333 TGGAGTTCTATTAATTGAGTTGCACC 59.626 38.462 0.00 0.00 0.00 5.01
3127 3620 2.698274 TGGATGCGCTGGAGTTCTATTA 59.302 45.455 9.73 0.00 0.00 0.98
3180 3677 0.093705 GAGCTTACGAAACAGCGCAG 59.906 55.000 11.47 3.33 41.24 5.18
3181 3678 0.319555 AGAGCTTACGAAACAGCGCA 60.320 50.000 11.47 0.00 41.24 6.09
3182 3679 0.790814 AAGAGCTTACGAAACAGCGC 59.209 50.000 0.00 0.00 41.24 5.92
3183 3680 1.792949 ACAAGAGCTTACGAAACAGCG 59.207 47.619 0.00 0.00 41.24 5.18
3184 3681 4.985044 TTACAAGAGCTTACGAAACAGC 57.015 40.909 0.00 0.00 36.16 4.40
3185 3682 5.465724 AGGTTTACAAGAGCTTACGAAACAG 59.534 40.000 11.71 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.