Multiple sequence alignment - TraesCS4A01G354300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G354300 chr4A 100.000 4394 0 0 1 4394 628929063 628924670 0.000000e+00 8115.0
1 TraesCS4A01G354300 chr5D 93.677 3669 158 42 752 4394 539477374 539480994 0.000000e+00 5422.0
2 TraesCS4A01G354300 chr5B 94.268 3437 143 23 571 3988 681130321 681133722 0.000000e+00 5206.0
3 TraesCS4A01G354300 chr5B 91.349 289 15 8 3 287 681130042 681130324 1.920000e-103 387.0
4 TraesCS4A01G354300 chr5B 84.857 350 19 6 4045 4394 681133712 681134027 5.480000e-84 322.0
5 TraesCS4A01G354300 chr2A 82.643 1014 115 28 3294 4260 24306053 24307052 0.000000e+00 841.0
6 TraesCS4A01G354300 chr2A 94.558 294 12 4 284 574 776781875 776782167 6.700000e-123 451.0
7 TraesCS4A01G354300 chr2A 83.333 72 9 3 643 713 692534533 692534602 3.670000e-06 63.9
8 TraesCS4A01G354300 chr2B 86.818 751 83 9 3355 4098 39189881 39189140 0.000000e+00 824.0
9 TraesCS4A01G354300 chr2B 92.744 317 21 1 2614 2928 39196897 39197213 1.440000e-124 457.0
10 TraesCS4A01G354300 chr2B 95.000 40 1 1 661 699 466170307 466170268 1.320000e-05 62.1
11 TraesCS4A01G354300 chr7B 85.408 747 78 12 1194 1932 744143050 744142327 0.000000e+00 747.0
12 TraesCS4A01G354300 chr7B 93.421 152 10 0 2140 2291 744141750 744141599 4.420000e-55 226.0
13 TraesCS4A01G354300 chr2D 80.946 803 103 27 3478 4251 22505524 22506305 1.360000e-164 590.0
14 TraesCS4A01G354300 chr2D 87.402 381 24 8 2623 3003 22504769 22505125 2.440000e-112 416.0
15 TraesCS4A01G354300 chr2D 89.362 47 5 0 643 689 551852624 551852670 4.750000e-05 60.2
16 TraesCS4A01G354300 chr3A 98.270 289 5 0 284 572 67438971 67439259 1.410000e-139 507.0
17 TraesCS4A01G354300 chr3A 95.548 292 12 1 285 575 170391772 170392063 2.390000e-127 466.0
18 TraesCS4A01G354300 chr3A 93.103 290 18 2 287 574 519214187 519213898 1.460000e-114 424.0
19 TraesCS4A01G354300 chr7A 98.270 289 4 1 287 574 86246431 86246143 5.070000e-139 505.0
20 TraesCS4A01G354300 chr7A 93.226 310 19 2 266 574 671238449 671238757 5.180000e-124 455.0
21 TraesCS4A01G354300 chr7A 93.151 292 18 2 283 572 33088606 33088897 1.130000e-115 427.0
22 TraesCS4A01G354300 chr3B 97.603 292 7 0 281 572 188179338 188179629 6.560000e-138 501.0
23 TraesCS4A01G354300 chr3B 92.778 180 13 0 3231 3410 826703063 826702884 1.210000e-65 261.0
24 TraesCS4A01G354300 chr3B 90.000 200 19 1 3216 3415 826659025 826658827 1.570000e-64 257.0
25 TraesCS4A01G354300 chr3B 74.723 451 71 27 3851 4273 826658444 826658009 1.260000e-35 161.0
26 TraesCS4A01G354300 chr3B 83.333 138 21 2 573 709 583988167 583988031 4.610000e-25 126.0
27 TraesCS4A01G354300 chr3B 88.889 63 7 0 3413 3475 804851685 804851747 1.310000e-10 78.7
28 TraesCS4A01G354300 chrUn 93.151 292 18 2 283 572 82023316 82023025 1.130000e-115 427.0
29 TraesCS4A01G354300 chr3D 90.710 183 16 1 3216 3398 612300983 612301164 4.390000e-60 243.0
30 TraesCS4A01G354300 chr3D 74.179 457 76 25 3828 4259 612301564 612302003 7.610000e-33 152.0
31 TraesCS4A01G354300 chr3D 87.755 49 5 1 651 698 600488284 600488236 6.140000e-04 56.5
32 TraesCS4A01G354300 chr6A 91.667 48 4 0 228 275 614543157 614543204 2.840000e-07 67.6
33 TraesCS4A01G354300 chr1D 84.375 64 9 1 650 713 340899554 340899492 1.320000e-05 62.1
34 TraesCS4A01G354300 chr1B 89.130 46 4 1 664 709 456293495 456293451 6.140000e-04 56.5
35 TraesCS4A01G354300 chr1B 92.308 39 3 0 228 266 535162473 535162511 6.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G354300 chr4A 628924670 628929063 4393 True 8115.000000 8115 100.0000 1 4394 1 chr4A.!!$R1 4393
1 TraesCS4A01G354300 chr5D 539477374 539480994 3620 False 5422.000000 5422 93.6770 752 4394 1 chr5D.!!$F1 3642
2 TraesCS4A01G354300 chr5B 681130042 681134027 3985 False 1971.666667 5206 90.1580 3 4394 3 chr5B.!!$F1 4391
3 TraesCS4A01G354300 chr2A 24306053 24307052 999 False 841.000000 841 82.6430 3294 4260 1 chr2A.!!$F1 966
4 TraesCS4A01G354300 chr2B 39189140 39189881 741 True 824.000000 824 86.8180 3355 4098 1 chr2B.!!$R1 743
5 TraesCS4A01G354300 chr7B 744141599 744143050 1451 True 486.500000 747 89.4145 1194 2291 2 chr7B.!!$R1 1097
6 TraesCS4A01G354300 chr2D 22504769 22506305 1536 False 503.000000 590 84.1740 2623 4251 2 chr2D.!!$F2 1628
7 TraesCS4A01G354300 chr3B 826658009 826659025 1016 True 209.000000 257 82.3615 3216 4273 2 chr3B.!!$R3 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 502 0.033109 AGCCAATTCCTTAGGGTGGC 60.033 55.0 24.34 24.34 40.90 5.01 F
569 574 0.035439 TCCTCCAAACCGAATGAGCC 60.035 55.0 0.00 0.00 0.00 4.70 F
705 714 0.046242 TGATGGTCTCCCTCCCCAAT 59.954 55.0 0.00 0.00 0.00 3.16 F
2523 2927 0.106719 GAATCCATGGGCTCGGGAAA 60.107 55.0 13.02 0.00 33.73 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2219 0.457337 GGCCAGATTTCGCAAGCAAG 60.457 55.000 0.0 0.0 37.18 4.01 R
2562 2966 0.107643 TGACGCCATCAGGTTCACAA 59.892 50.000 0.0 0.0 37.19 3.33 R
2661 3065 8.202461 CCATCCTTGGAGTTATACCATACTTA 57.798 38.462 0.0 0.0 46.92 2.24 R
4222 5100 2.294791 CCCCGACAAATAAAAGCACACA 59.705 45.455 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 201 4.040339 GGGGAAACATCAGTGAAACCATTT 59.960 41.667 0.00 0.00 37.80 2.32
198 202 5.454613 GGGGAAACATCAGTGAAACCATTTT 60.455 40.000 0.00 0.00 37.80 1.82
199 203 6.054941 GGGAAACATCAGTGAAACCATTTTT 58.945 36.000 0.00 0.00 37.80 1.94
237 241 7.709947 AGTAAATGCATATGTGGTCATCTTTG 58.290 34.615 0.00 0.00 35.70 2.77
248 253 3.575256 TGGTCATCTTTGCTCATTGCTTT 59.425 39.130 0.00 0.00 43.37 3.51
275 280 3.907221 AGCAAATTCAGTAGCCCATGAT 58.093 40.909 0.00 0.00 0.00 2.45
276 281 3.635373 AGCAAATTCAGTAGCCCATGATG 59.365 43.478 0.00 0.00 0.00 3.07
277 282 3.633525 GCAAATTCAGTAGCCCATGATGA 59.366 43.478 0.00 0.00 0.00 2.92
278 283 4.261489 GCAAATTCAGTAGCCCATGATGAG 60.261 45.833 0.00 0.00 0.00 2.90
279 284 2.627515 TTCAGTAGCCCATGATGAGC 57.372 50.000 0.00 0.00 0.00 4.26
280 285 1.798626 TCAGTAGCCCATGATGAGCT 58.201 50.000 6.69 6.69 40.66 4.09
281 286 2.962859 TCAGTAGCCCATGATGAGCTA 58.037 47.619 4.43 4.43 38.06 3.32
282 287 2.896044 TCAGTAGCCCATGATGAGCTAG 59.104 50.000 9.01 0.00 39.66 3.42
283 288 1.622811 AGTAGCCCATGATGAGCTAGC 59.377 52.381 9.01 6.62 39.66 3.42
284 289 1.622811 GTAGCCCATGATGAGCTAGCT 59.377 52.381 19.45 19.45 39.66 3.32
285 290 2.021262 AGCCCATGATGAGCTAGCTA 57.979 50.000 19.38 1.43 34.38 3.32
286 291 2.333069 AGCCCATGATGAGCTAGCTAA 58.667 47.619 19.38 11.69 34.38 3.09
287 292 2.302445 AGCCCATGATGAGCTAGCTAAG 59.698 50.000 19.38 0.00 34.38 2.18
288 293 2.614987 GCCCATGATGAGCTAGCTAAGG 60.615 54.545 19.38 8.64 0.00 2.69
289 294 2.027377 CCCATGATGAGCTAGCTAAGGG 60.027 54.545 19.38 14.06 0.00 3.95
290 295 2.614987 CCATGATGAGCTAGCTAAGGGC 60.615 54.545 19.38 5.21 42.19 5.19
291 296 1.051812 TGATGAGCTAGCTAAGGGCC 58.948 55.000 19.38 4.39 43.05 5.80
292 297 1.347062 GATGAGCTAGCTAAGGGCCT 58.653 55.000 19.38 0.00 43.05 5.19
293 298 2.158310 TGATGAGCTAGCTAAGGGCCTA 60.158 50.000 19.38 0.00 43.05 3.93
294 299 2.704190 TGAGCTAGCTAAGGGCCTAT 57.296 50.000 19.38 0.00 43.05 2.57
295 300 2.977808 TGAGCTAGCTAAGGGCCTATT 58.022 47.619 19.38 0.02 43.05 1.73
296 301 2.900546 TGAGCTAGCTAAGGGCCTATTC 59.099 50.000 19.38 0.88 43.05 1.75
297 302 1.896465 AGCTAGCTAAGGGCCTATTCG 59.104 52.381 17.69 0.00 43.05 3.34
298 303 1.066787 GCTAGCTAAGGGCCTATTCGG 60.067 57.143 6.41 0.00 43.05 4.30
299 304 2.249139 CTAGCTAAGGGCCTATTCGGT 58.751 52.381 6.41 3.79 43.05 4.69
300 305 1.508256 AGCTAAGGGCCTATTCGGTT 58.492 50.000 6.41 0.00 43.05 4.44
301 306 1.844497 AGCTAAGGGCCTATTCGGTTT 59.156 47.619 6.41 0.00 43.05 3.27
302 307 1.947456 GCTAAGGGCCTATTCGGTTTG 59.053 52.381 6.41 0.00 34.25 2.93
303 308 2.572290 CTAAGGGCCTATTCGGTTTGG 58.428 52.381 6.41 0.00 34.25 3.28
304 309 0.996583 AAGGGCCTATTCGGTTTGGA 59.003 50.000 6.41 0.00 34.25 3.53
305 310 0.546598 AGGGCCTATTCGGTTTGGAG 59.453 55.000 2.82 0.00 34.25 3.86
306 311 0.465642 GGGCCTATTCGGTTTGGAGG 60.466 60.000 0.84 0.00 34.25 4.30
307 312 0.544697 GGCCTATTCGGTTTGGAGGA 59.455 55.000 0.00 0.00 34.25 3.71
308 313 1.143073 GGCCTATTCGGTTTGGAGGAT 59.857 52.381 0.00 0.00 34.25 3.24
309 314 2.422945 GGCCTATTCGGTTTGGAGGATT 60.423 50.000 0.00 0.00 34.25 3.01
310 315 3.288092 GCCTATTCGGTTTGGAGGATTT 58.712 45.455 0.00 0.00 34.25 2.17
311 316 3.699538 GCCTATTCGGTTTGGAGGATTTT 59.300 43.478 0.00 0.00 34.25 1.82
312 317 4.202020 GCCTATTCGGTTTGGAGGATTTTC 60.202 45.833 0.00 0.00 34.25 2.29
313 318 4.947388 CCTATTCGGTTTGGAGGATTTTCA 59.053 41.667 0.00 0.00 0.00 2.69
314 319 5.594317 CCTATTCGGTTTGGAGGATTTTCAT 59.406 40.000 0.00 0.00 0.00 2.57
315 320 6.770785 CCTATTCGGTTTGGAGGATTTTCATA 59.229 38.462 0.00 0.00 0.00 2.15
316 321 6.699575 ATTCGGTTTGGAGGATTTTCATAG 57.300 37.500 0.00 0.00 0.00 2.23
317 322 5.429681 TCGGTTTGGAGGATTTTCATAGA 57.570 39.130 0.00 0.00 0.00 1.98
318 323 5.811190 TCGGTTTGGAGGATTTTCATAGAA 58.189 37.500 0.00 0.00 0.00 2.10
319 324 6.242396 TCGGTTTGGAGGATTTTCATAGAAA 58.758 36.000 0.00 0.00 0.00 2.52
320 325 6.717540 TCGGTTTGGAGGATTTTCATAGAAAA 59.282 34.615 7.30 7.30 0.00 2.29
321 326 6.806739 CGGTTTGGAGGATTTTCATAGAAAAC 59.193 38.462 7.03 2.78 0.00 2.43
322 327 7.523052 CGGTTTGGAGGATTTTCATAGAAAACA 60.523 37.037 7.03 0.00 0.00 2.83
323 328 7.598869 GGTTTGGAGGATTTTCATAGAAAACAC 59.401 37.037 7.03 4.10 0.00 3.32
324 329 7.831691 TTGGAGGATTTTCATAGAAAACACA 57.168 32.000 7.03 1.20 0.00 3.72
325 330 8.421249 TTGGAGGATTTTCATAGAAAACACAT 57.579 30.769 7.03 3.41 0.00 3.21
326 331 9.527157 TTGGAGGATTTTCATAGAAAACACATA 57.473 29.630 7.03 0.00 0.00 2.29
327 332 9.177608 TGGAGGATTTTCATAGAAAACACATAG 57.822 33.333 7.03 0.00 0.00 2.23
328 333 8.624776 GGAGGATTTTCATAGAAAACACATAGG 58.375 37.037 7.03 0.00 0.00 2.57
329 334 9.396022 GAGGATTTTCATAGAAAACACATAGGA 57.604 33.333 7.03 0.00 0.00 2.94
330 335 9.753674 AGGATTTTCATAGAAAACACATAGGAA 57.246 29.630 7.03 0.00 0.00 3.36
331 336 9.788960 GGATTTTCATAGAAAACACATAGGAAC 57.211 33.333 7.03 0.00 0.00 3.62
335 340 7.921786 TCATAGAAAACACATAGGAACAAGG 57.078 36.000 0.00 0.00 0.00 3.61
336 341 7.685481 TCATAGAAAACACATAGGAACAAGGA 58.315 34.615 0.00 0.00 0.00 3.36
337 342 8.328758 TCATAGAAAACACATAGGAACAAGGAT 58.671 33.333 0.00 0.00 0.00 3.24
338 343 8.616076 CATAGAAAACACATAGGAACAAGGATC 58.384 37.037 0.00 0.00 0.00 3.36
339 344 5.946377 AGAAAACACATAGGAACAAGGATCC 59.054 40.000 2.48 2.48 37.22 3.36
340 345 3.933861 ACACATAGGAACAAGGATCCC 57.066 47.619 8.55 0.00 37.71 3.85
341 346 2.170607 ACACATAGGAACAAGGATCCCG 59.829 50.000 8.55 2.15 37.71 5.14
342 347 2.434336 CACATAGGAACAAGGATCCCGA 59.566 50.000 8.55 0.00 37.71 5.14
343 348 3.112263 ACATAGGAACAAGGATCCCGAA 58.888 45.455 8.55 0.00 37.71 4.30
344 349 3.134804 ACATAGGAACAAGGATCCCGAAG 59.865 47.826 8.55 0.00 37.71 3.79
366 371 9.922305 CGAAGGAAATTTTCTATAGATGTGTTC 57.078 33.333 2.58 5.87 0.00 3.18
367 372 9.922305 GAAGGAAATTTTCTATAGATGTGTTCG 57.078 33.333 2.58 0.00 0.00 3.95
368 373 8.438676 AGGAAATTTTCTATAGATGTGTTCGG 57.561 34.615 2.58 0.00 0.00 4.30
369 374 8.047310 AGGAAATTTTCTATAGATGTGTTCGGT 58.953 33.333 2.58 0.00 0.00 4.69
370 375 8.674607 GGAAATTTTCTATAGATGTGTTCGGTT 58.325 33.333 2.58 0.00 0.00 4.44
372 377 9.840427 AAATTTTCTATAGATGTGTTCGGTTTG 57.160 29.630 2.58 0.00 0.00 2.93
373 378 7.972832 TTTTCTATAGATGTGTTCGGTTTGT 57.027 32.000 2.58 0.00 0.00 2.83
374 379 9.661563 ATTTTCTATAGATGTGTTCGGTTTGTA 57.338 29.630 2.58 0.00 0.00 2.41
375 380 8.697846 TTTCTATAGATGTGTTCGGTTTGTAG 57.302 34.615 2.58 0.00 0.00 2.74
376 381 6.802608 TCTATAGATGTGTTCGGTTTGTAGG 58.197 40.000 0.00 0.00 0.00 3.18
377 382 5.670792 ATAGATGTGTTCGGTTTGTAGGA 57.329 39.130 0.00 0.00 0.00 2.94
378 383 4.345859 AGATGTGTTCGGTTTGTAGGAA 57.654 40.909 0.00 0.00 0.00 3.36
379 384 4.710324 AGATGTGTTCGGTTTGTAGGAAA 58.290 39.130 0.00 0.00 0.00 3.13
380 385 5.313712 AGATGTGTTCGGTTTGTAGGAAAT 58.686 37.500 0.00 0.00 0.00 2.17
381 386 4.822036 TGTGTTCGGTTTGTAGGAAATG 57.178 40.909 0.00 0.00 0.00 2.32
382 387 4.200874 TGTGTTCGGTTTGTAGGAAATGT 58.799 39.130 0.00 0.00 0.00 2.71
383 388 4.035792 TGTGTTCGGTTTGTAGGAAATGTG 59.964 41.667 0.00 0.00 0.00 3.21
384 389 4.035909 GTGTTCGGTTTGTAGGAAATGTGT 59.964 41.667 0.00 0.00 0.00 3.72
385 390 5.236911 GTGTTCGGTTTGTAGGAAATGTGTA 59.763 40.000 0.00 0.00 0.00 2.90
386 391 5.998981 TGTTCGGTTTGTAGGAAATGTGTAT 59.001 36.000 0.00 0.00 0.00 2.29
387 392 7.118101 GTGTTCGGTTTGTAGGAAATGTGTATA 59.882 37.037 0.00 0.00 0.00 1.47
388 393 7.332430 TGTTCGGTTTGTAGGAAATGTGTATAG 59.668 37.037 0.00 0.00 0.00 1.31
389 394 6.342906 TCGGTTTGTAGGAAATGTGTATAGG 58.657 40.000 0.00 0.00 0.00 2.57
390 395 6.154877 TCGGTTTGTAGGAAATGTGTATAGGA 59.845 38.462 0.00 0.00 0.00 2.94
391 396 6.819649 CGGTTTGTAGGAAATGTGTATAGGAA 59.180 38.462 0.00 0.00 0.00 3.36
392 397 7.497909 CGGTTTGTAGGAAATGTGTATAGGAAT 59.502 37.037 0.00 0.00 0.00 3.01
393 398 9.185680 GGTTTGTAGGAAATGTGTATAGGAATT 57.814 33.333 0.00 0.00 0.00 2.17
396 401 8.657074 TGTAGGAAATGTGTATAGGAATTTCG 57.343 34.615 0.00 0.00 39.06 3.46
397 402 8.262227 TGTAGGAAATGTGTATAGGAATTTCGT 58.738 33.333 0.00 0.00 39.06 3.85
398 403 9.754382 GTAGGAAATGTGTATAGGAATTTCGTA 57.246 33.333 1.61 1.61 39.06 3.43
399 404 8.888579 AGGAAATGTGTATAGGAATTTCGTAG 57.111 34.615 5.21 0.00 39.06 3.51
400 405 7.931948 AGGAAATGTGTATAGGAATTTCGTAGG 59.068 37.037 5.21 0.00 39.06 3.18
401 406 7.929785 GGAAATGTGTATAGGAATTTCGTAGGA 59.070 37.037 5.21 0.00 39.06 2.94
402 407 9.321562 GAAATGTGTATAGGAATTTCGTAGGAA 57.678 33.333 5.21 0.00 31.49 3.36
403 408 9.847224 AAATGTGTATAGGAATTTCGTAGGAAT 57.153 29.630 0.00 0.00 30.88 3.01
405 410 9.924650 ATGTGTATAGGAATTTCGTAGGAATAC 57.075 33.333 0.00 4.59 30.88 1.89
406 411 9.139734 TGTGTATAGGAATTTCGTAGGAATACT 57.860 33.333 0.00 0.00 30.88 2.12
418 423 9.542462 TTTCGTAGGAATACTATTCATTTCCTG 57.458 33.333 12.19 0.00 45.74 3.86
419 424 8.246430 TCGTAGGAATACTATTCATTTCCTGT 57.754 34.615 12.19 0.00 45.74 4.00
420 425 8.141909 TCGTAGGAATACTATTCATTTCCTGTG 58.858 37.037 12.19 5.70 45.74 3.66
421 426 7.926555 CGTAGGAATACTATTCATTTCCTGTGT 59.073 37.037 12.19 0.00 45.74 3.72
422 427 9.614792 GTAGGAATACTATTCATTTCCTGTGTT 57.385 33.333 12.19 0.00 45.74 3.32
424 429 9.533831 AGGAATACTATTCATTTCCTGTGTTTT 57.466 29.630 10.37 0.00 44.80 2.43
427 432 9.927668 AATACTATTCATTTCCTGTGTTTTTGG 57.072 29.630 0.00 0.00 0.00 3.28
428 433 7.595819 ACTATTCATTTCCTGTGTTTTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
429 434 7.661040 ACTATTCATTTCCTGTGTTTTTGGAG 58.339 34.615 0.00 0.00 0.00 3.86
430 435 6.729690 ATTCATTTCCTGTGTTTTTGGAGA 57.270 33.333 0.00 0.00 0.00 3.71
431 436 6.537453 TTCATTTCCTGTGTTTTTGGAGAA 57.463 33.333 0.00 0.00 0.00 2.87
432 437 6.537453 TCATTTCCTGTGTTTTTGGAGAAA 57.463 33.333 0.00 0.00 0.00 2.52
433 438 6.940739 TCATTTCCTGTGTTTTTGGAGAAAA 58.059 32.000 0.00 0.00 0.00 2.29
434 439 7.563906 TCATTTCCTGTGTTTTTGGAGAAAAT 58.436 30.769 0.00 0.00 31.07 1.82
435 440 8.046107 TCATTTCCTGTGTTTTTGGAGAAAATT 58.954 29.630 0.00 0.00 31.07 1.82
436 441 9.323985 CATTTCCTGTGTTTTTGGAGAAAATTA 57.676 29.630 0.00 0.00 31.07 1.40
437 442 8.710835 TTTCCTGTGTTTTTGGAGAAAATTAC 57.289 30.769 0.00 0.00 31.07 1.89
438 443 7.411486 TCCTGTGTTTTTGGAGAAAATTACA 57.589 32.000 0.00 0.00 31.07 2.41
439 444 7.262048 TCCTGTGTTTTTGGAGAAAATTACAC 58.738 34.615 0.00 0.00 40.54 2.90
440 445 7.038659 CCTGTGTTTTTGGAGAAAATTACACA 58.961 34.615 13.33 13.33 43.76 3.72
441 446 7.710475 CCTGTGTTTTTGGAGAAAATTACACAT 59.290 33.333 13.97 0.00 44.27 3.21
442 447 8.641499 TGTGTTTTTGGAGAAAATTACACATC 57.359 30.769 11.27 0.00 42.56 3.06
443 448 7.708752 TGTGTTTTTGGAGAAAATTACACATCC 59.291 33.333 11.27 0.00 42.56 3.51
444 449 7.708752 GTGTTTTTGGAGAAAATTACACATCCA 59.291 33.333 0.00 0.00 40.22 3.41
445 450 7.708752 TGTTTTTGGAGAAAATTACACATCCAC 59.291 33.333 0.00 0.00 36.60 4.02
446 451 7.595819 TTTTGGAGAAAATTACACATCCACT 57.404 32.000 0.00 0.00 36.60 4.00
447 452 6.817765 TTGGAGAAAATTACACATCCACTC 57.182 37.500 0.00 0.00 36.60 3.51
448 453 5.875224 TGGAGAAAATTACACATCCACTCA 58.125 37.500 0.00 0.00 32.04 3.41
449 454 6.303054 TGGAGAAAATTACACATCCACTCAA 58.697 36.000 0.00 0.00 32.04 3.02
450 455 6.775142 TGGAGAAAATTACACATCCACTCAAA 59.225 34.615 0.00 0.00 32.04 2.69
451 456 7.040478 TGGAGAAAATTACACATCCACTCAAAG 60.040 37.037 0.00 0.00 32.04 2.77
452 457 6.681777 AGAAAATTACACATCCACTCAAAGC 58.318 36.000 0.00 0.00 0.00 3.51
453 458 6.491403 AGAAAATTACACATCCACTCAAAGCT 59.509 34.615 0.00 0.00 0.00 3.74
454 459 5.886960 AATTACACATCCACTCAAAGCTC 57.113 39.130 0.00 0.00 0.00 4.09
455 460 2.936919 ACACATCCACTCAAAGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
456 461 3.430042 ACACATCCACTCAAAGCTCAT 57.570 42.857 0.00 0.00 0.00 2.90
457 462 3.759581 ACACATCCACTCAAAGCTCATT 58.240 40.909 0.00 0.00 0.00 2.57
458 463 4.147321 ACACATCCACTCAAAGCTCATTT 58.853 39.130 0.00 0.00 0.00 2.32
459 464 4.586001 ACACATCCACTCAAAGCTCATTTT 59.414 37.500 0.00 0.00 0.00 1.82
460 465 4.921515 CACATCCACTCAAAGCTCATTTTG 59.078 41.667 0.00 0.00 38.97 2.44
461 466 3.648339 TCCACTCAAAGCTCATTTTGC 57.352 42.857 0.00 0.00 37.83 3.68
462 467 2.030893 TCCACTCAAAGCTCATTTTGCG 60.031 45.455 0.00 0.00 37.83 4.85
463 468 1.717645 CACTCAAAGCTCATTTTGCGC 59.282 47.619 0.00 0.00 37.83 6.09
464 469 0.979811 CTCAAAGCTCATTTTGCGCG 59.020 50.000 0.00 0.00 37.83 6.86
465 470 0.310543 TCAAAGCTCATTTTGCGCGT 59.689 45.000 8.43 0.00 37.83 6.01
466 471 1.533299 TCAAAGCTCATTTTGCGCGTA 59.467 42.857 8.43 0.00 37.83 4.42
467 472 1.906966 CAAAGCTCATTTTGCGCGTAG 59.093 47.619 8.43 0.00 32.55 3.51
468 473 0.447801 AAGCTCATTTTGCGCGTAGG 59.552 50.000 8.43 0.00 32.55 3.18
469 474 0.391130 AGCTCATTTTGCGCGTAGGA 60.391 50.000 8.43 0.00 32.55 2.94
470 475 0.446222 GCTCATTTTGCGCGTAGGAA 59.554 50.000 8.43 2.45 0.00 3.36
471 476 1.790481 GCTCATTTTGCGCGTAGGAAC 60.790 52.381 8.43 0.00 0.00 3.62
481 486 2.104530 GTAGGAACGAGGCGAGCC 59.895 66.667 5.89 5.89 0.00 4.70
482 487 2.361992 TAGGAACGAGGCGAGCCA 60.362 61.111 17.18 0.00 38.92 4.75
483 488 1.980232 TAGGAACGAGGCGAGCCAA 60.980 57.895 17.18 0.00 38.92 4.52
484 489 1.327690 TAGGAACGAGGCGAGCCAAT 61.328 55.000 17.18 0.00 38.92 3.16
485 490 1.745489 GGAACGAGGCGAGCCAATT 60.745 57.895 17.18 7.03 38.92 2.32
486 491 1.706287 GGAACGAGGCGAGCCAATTC 61.706 60.000 17.18 14.85 38.92 2.17
487 492 1.706287 GAACGAGGCGAGCCAATTCC 61.706 60.000 17.18 0.00 38.92 3.01
488 493 2.185310 AACGAGGCGAGCCAATTCCT 62.185 55.000 17.18 0.00 38.92 3.36
489 494 1.450312 CGAGGCGAGCCAATTCCTT 60.450 57.895 17.18 0.00 38.92 3.36
490 495 0.179084 CGAGGCGAGCCAATTCCTTA 60.179 55.000 17.18 0.00 38.92 2.69
491 496 1.587547 GAGGCGAGCCAATTCCTTAG 58.412 55.000 17.18 0.00 38.92 2.18
492 497 0.181350 AGGCGAGCCAATTCCTTAGG 59.819 55.000 17.18 0.00 38.92 2.69
493 498 0.819666 GGCGAGCCAATTCCTTAGGG 60.820 60.000 9.58 0.00 35.81 3.53
494 499 0.107165 GCGAGCCAATTCCTTAGGGT 60.107 55.000 0.00 0.00 35.52 4.34
495 500 1.668419 CGAGCCAATTCCTTAGGGTG 58.332 55.000 0.00 0.00 32.43 4.61
496 501 1.747206 CGAGCCAATTCCTTAGGGTGG 60.747 57.143 10.79 10.79 32.43 4.61
497 502 0.033109 AGCCAATTCCTTAGGGTGGC 60.033 55.000 24.34 24.34 40.90 5.01
498 503 0.324275 GCCAATTCCTTAGGGTGGCA 60.324 55.000 25.78 0.00 40.37 4.92
499 504 1.894978 GCCAATTCCTTAGGGTGGCAA 60.895 52.381 25.78 4.59 40.37 4.52
500 505 2.102578 CCAATTCCTTAGGGTGGCAAG 58.897 52.381 0.00 0.00 0.00 4.01
501 506 2.557452 CCAATTCCTTAGGGTGGCAAGT 60.557 50.000 0.00 0.00 0.00 3.16
502 507 2.493278 CAATTCCTTAGGGTGGCAAGTG 59.507 50.000 0.00 0.00 0.00 3.16
503 508 0.251165 TTCCTTAGGGTGGCAAGTGC 60.251 55.000 0.00 0.00 41.14 4.40
519 524 5.532557 GCAAGTGCCATCCTATAAAATTCC 58.467 41.667 0.00 0.00 34.31 3.01
520 525 5.302823 GCAAGTGCCATCCTATAAAATTCCT 59.697 40.000 0.00 0.00 34.31 3.36
521 526 6.490040 GCAAGTGCCATCCTATAAAATTCCTA 59.510 38.462 0.00 0.00 34.31 2.94
522 527 7.177392 GCAAGTGCCATCCTATAAAATTCCTAT 59.823 37.037 0.00 0.00 34.31 2.57
523 528 9.739276 CAAGTGCCATCCTATAAAATTCCTATA 57.261 33.333 0.00 0.00 0.00 1.31
524 529 9.740710 AAGTGCCATCCTATAAAATTCCTATAC 57.259 33.333 0.00 0.00 0.00 1.47
525 530 8.329502 AGTGCCATCCTATAAAATTCCTATACC 58.670 37.037 0.00 0.00 0.00 2.73
526 531 8.107095 GTGCCATCCTATAAAATTCCTATACCA 58.893 37.037 0.00 0.00 0.00 3.25
527 532 8.328758 TGCCATCCTATAAAATTCCTATACCAG 58.671 37.037 0.00 0.00 0.00 4.00
528 533 8.329502 GCCATCCTATAAAATTCCTATACCAGT 58.670 37.037 0.00 0.00 0.00 4.00
529 534 9.892130 CCATCCTATAAAATTCCTATACCAGTC 57.108 37.037 0.00 0.00 0.00 3.51
530 535 9.892130 CATCCTATAAAATTCCTATACCAGTCC 57.108 37.037 0.00 0.00 0.00 3.85
531 536 9.860393 ATCCTATAAAATTCCTATACCAGTCCT 57.140 33.333 0.00 0.00 0.00 3.85
538 543 8.582891 AAATTCCTATACCAGTCCTAATTCCT 57.417 34.615 0.00 0.00 0.00 3.36
539 544 9.684702 AAATTCCTATACCAGTCCTAATTCCTA 57.315 33.333 0.00 0.00 0.00 2.94
540 545 8.667592 ATTCCTATACCAGTCCTAATTCCTAC 57.332 38.462 0.00 0.00 0.00 3.18
541 546 6.243900 TCCTATACCAGTCCTAATTCCTACG 58.756 44.000 0.00 0.00 0.00 3.51
542 547 6.008960 CCTATACCAGTCCTAATTCCTACGT 58.991 44.000 0.00 0.00 0.00 3.57
543 548 6.492772 CCTATACCAGTCCTAATTCCTACGTT 59.507 42.308 0.00 0.00 0.00 3.99
544 549 7.667219 CCTATACCAGTCCTAATTCCTACGTTA 59.333 40.741 0.00 0.00 0.00 3.18
545 550 9.240734 CTATACCAGTCCTAATTCCTACGTTAT 57.759 37.037 0.00 0.00 0.00 1.89
546 551 6.158023 ACCAGTCCTAATTCCTACGTTATG 57.842 41.667 0.00 0.00 0.00 1.90
547 552 5.895534 ACCAGTCCTAATTCCTACGTTATGA 59.104 40.000 0.00 0.00 0.00 2.15
548 553 6.381994 ACCAGTCCTAATTCCTACGTTATGAA 59.618 38.462 0.00 0.00 0.00 2.57
549 554 7.093201 ACCAGTCCTAATTCCTACGTTATGAAA 60.093 37.037 0.00 0.00 0.00 2.69
550 555 7.931948 CCAGTCCTAATTCCTACGTTATGAAAT 59.068 37.037 0.00 0.00 0.00 2.17
551 556 8.979574 CAGTCCTAATTCCTACGTTATGAAATC 58.020 37.037 0.00 0.00 0.00 2.17
552 557 8.148999 AGTCCTAATTCCTACGTTATGAAATCC 58.851 37.037 0.00 0.00 0.00 3.01
553 558 8.148999 GTCCTAATTCCTACGTTATGAAATCCT 58.851 37.037 0.00 0.00 0.00 3.24
554 559 8.365647 TCCTAATTCCTACGTTATGAAATCCTC 58.634 37.037 0.00 0.00 0.00 3.71
555 560 7.603024 CCTAATTCCTACGTTATGAAATCCTCC 59.397 40.741 0.00 0.00 0.00 4.30
556 561 5.943349 TTCCTACGTTATGAAATCCTCCA 57.057 39.130 0.00 0.00 0.00 3.86
557 562 5.943349 TCCTACGTTATGAAATCCTCCAA 57.057 39.130 0.00 0.00 0.00 3.53
558 563 6.302535 TCCTACGTTATGAAATCCTCCAAA 57.697 37.500 0.00 0.00 0.00 3.28
559 564 6.110707 TCCTACGTTATGAAATCCTCCAAAC 58.889 40.000 0.00 0.00 0.00 2.93
560 565 5.296035 CCTACGTTATGAAATCCTCCAAACC 59.704 44.000 0.00 0.00 0.00 3.27
561 566 3.687698 ACGTTATGAAATCCTCCAAACCG 59.312 43.478 0.00 0.00 0.00 4.44
562 567 3.936453 CGTTATGAAATCCTCCAAACCGA 59.064 43.478 0.00 0.00 0.00 4.69
563 568 4.393680 CGTTATGAAATCCTCCAAACCGAA 59.606 41.667 0.00 0.00 0.00 4.30
564 569 5.065988 CGTTATGAAATCCTCCAAACCGAAT 59.934 40.000 0.00 0.00 0.00 3.34
565 570 4.989279 ATGAAATCCTCCAAACCGAATG 57.011 40.909 0.00 0.00 0.00 2.67
566 571 4.027674 TGAAATCCTCCAAACCGAATGA 57.972 40.909 0.00 0.00 0.00 2.57
567 572 4.009675 TGAAATCCTCCAAACCGAATGAG 58.990 43.478 0.00 0.00 0.00 2.90
568 573 2.044123 ATCCTCCAAACCGAATGAGC 57.956 50.000 0.00 0.00 0.00 4.26
569 574 0.035439 TCCTCCAAACCGAATGAGCC 60.035 55.000 0.00 0.00 0.00 4.70
574 579 2.017049 CCAAACCGAATGAGCCCTAAG 58.983 52.381 0.00 0.00 0.00 2.18
601 606 8.725405 TCAGTTTTTGTAATAAGTGTCAGACA 57.275 30.769 0.00 0.00 0.00 3.41
611 616 7.602517 AATAAGTGTCAGACAAGTTAGATGC 57.397 36.000 4.32 0.00 0.00 3.91
650 655 3.670625 TCAATTCCCCAACTAGTGAACG 58.329 45.455 0.00 0.00 0.00 3.95
668 673 8.099364 AGTGAACGATGTAATTCTTGTTTGAT 57.901 30.769 0.00 0.00 0.00 2.57
691 700 9.399797 TGATATTAATAAAGCTAGCCATGATGG 57.600 33.333 12.13 7.21 41.55 3.51
692 701 9.401058 GATATTAATAAAGCTAGCCATGATGGT 57.599 33.333 13.84 2.65 40.46 3.55
695 704 2.926778 AAGCTAGCCATGATGGTCTC 57.073 50.000 13.84 0.00 40.46 3.36
696 705 1.055040 AGCTAGCCATGATGGTCTCC 58.945 55.000 13.84 6.00 40.46 3.71
698 707 1.727062 CTAGCCATGATGGTCTCCCT 58.273 55.000 13.84 3.59 40.46 4.20
700 709 1.059006 AGCCATGATGGTCTCCCTCC 61.059 60.000 13.84 0.00 40.46 4.30
705 714 0.046242 TGATGGTCTCCCTCCCCAAT 59.954 55.000 0.00 0.00 0.00 3.16
706 715 1.296832 TGATGGTCTCCCTCCCCAATA 59.703 52.381 0.00 0.00 0.00 1.90
707 716 2.294195 TGATGGTCTCCCTCCCCAATAA 60.294 50.000 0.00 0.00 0.00 1.40
708 717 2.369668 TGGTCTCCCTCCCCAATAAA 57.630 50.000 0.00 0.00 0.00 1.40
709 718 2.871796 TGGTCTCCCTCCCCAATAAAT 58.128 47.619 0.00 0.00 0.00 1.40
710 719 4.029142 TGGTCTCCCTCCCCAATAAATA 57.971 45.455 0.00 0.00 0.00 1.40
711 720 4.385386 TGGTCTCCCTCCCCAATAAATAA 58.615 43.478 0.00 0.00 0.00 1.40
712 721 4.796816 TGGTCTCCCTCCCCAATAAATAAA 59.203 41.667 0.00 0.00 0.00 1.40
713 722 5.438386 TGGTCTCCCTCCCCAATAAATAAAT 59.562 40.000 0.00 0.00 0.00 1.40
714 723 6.626121 TGGTCTCCCTCCCCAATAAATAAATA 59.374 38.462 0.00 0.00 0.00 1.40
715 724 7.131227 TGGTCTCCCTCCCCAATAAATAAATAA 59.869 37.037 0.00 0.00 0.00 1.40
716 725 8.008332 GGTCTCCCTCCCCAATAAATAAATAAA 58.992 37.037 0.00 0.00 0.00 1.40
717 726 9.601810 GTCTCCCTCCCCAATAAATAAATAAAT 57.398 33.333 0.00 0.00 0.00 1.40
803 815 8.635328 TCTGTAGTGACTTTGTCAATGTAGTTA 58.365 33.333 10.33 0.00 44.49 2.24
830 843 8.731275 AAAACCCCACATTTTTAGAGAAAAAG 57.269 30.769 2.47 0.00 45.33 2.27
831 844 6.419484 ACCCCACATTTTTAGAGAAAAAGG 57.581 37.500 6.12 6.12 45.33 3.11
852 865 3.469739 GTTGGTTAAACGAGGACTTGGA 58.530 45.455 0.00 0.00 0.00 3.53
856 869 1.719529 TAAACGAGGACTTGGACCCA 58.280 50.000 0.00 0.00 0.00 4.51
857 870 1.064825 AAACGAGGACTTGGACCCAT 58.935 50.000 0.00 0.00 0.00 4.00
867 880 4.657039 GGACTTGGACCCATATACTAACCA 59.343 45.833 0.00 0.00 0.00 3.67
890 903 2.202395 GGCCCAAGCAGACAAAGCA 61.202 57.895 0.00 0.00 42.56 3.91
924 937 2.737252 GGCCACTAGACGAAAGAAAGTG 59.263 50.000 0.00 0.00 37.90 3.16
928 941 4.051922 CACTAGACGAAAGAAAGTGTGCT 58.948 43.478 0.00 0.00 35.51 4.40
929 942 5.220381 CACTAGACGAAAGAAAGTGTGCTA 58.780 41.667 0.00 0.00 35.51 3.49
964 977 4.151512 CGAAGCAAAGTCTTCTCTCTTTCC 59.848 45.833 0.00 0.00 40.11 3.13
965 978 4.972751 AGCAAAGTCTTCTCTCTTTCCT 57.027 40.909 0.00 0.00 32.52 3.36
979 992 1.474879 CTTTCCTCTCTGGTCTCGTCC 59.525 57.143 0.00 0.00 37.07 4.79
1131 1158 2.036098 CCATGCCACCTCCAGCAA 59.964 61.111 0.00 0.00 43.36 3.91
1884 1919 2.017049 GTTACTTGGAGCGCCATCATT 58.983 47.619 10.98 0.00 45.46 2.57
1890 1925 3.001514 AGCGCCATCATTGGAGGT 58.998 55.556 2.29 0.00 46.93 3.85
1899 1934 3.324556 CCATCATTGGAGGTTTTGTGGTT 59.675 43.478 0.00 0.00 46.92 3.67
2043 2219 3.684788 ACATCGGTAAACAGCTTCATGTC 59.315 43.478 0.00 0.00 31.50 3.06
2196 2600 1.313091 ACAGTGCGCTCGTATCAGGA 61.313 55.000 9.73 0.00 0.00 3.86
2233 2637 2.390599 GCGGATGCAGCGTTTCTCA 61.391 57.895 0.00 0.00 42.15 3.27
2376 2780 0.321564 TTCGTGGAATGGCACCAGAG 60.322 55.000 0.00 0.00 38.14 3.35
2478 2882 1.491670 CAGCTCGGGATATTGTGTCG 58.508 55.000 0.00 0.00 0.00 4.35
2523 2927 0.106719 GAATCCATGGGCTCGGGAAA 60.107 55.000 13.02 0.00 33.73 3.13
2553 2957 1.400242 GCGCTGTTCTTGGACATGAAC 60.400 52.381 18.65 18.65 42.42 3.18
2562 2966 2.183478 TGGACATGAACAATCACGCT 57.817 45.000 0.00 0.00 38.69 5.07
2589 2993 2.019249 CCTGATGGCGTCACATTCATT 58.981 47.619 5.03 0.00 32.22 2.57
2601 3005 5.227805 CGTCACATTCATTTGCCTAATTTCG 59.772 40.000 0.00 0.00 0.00 3.46
2847 3251 6.708949 AGAACATCGTTTTAGGAAAGCAAGTA 59.291 34.615 0.00 0.00 0.00 2.24
2886 3290 1.153695 TAGGACCTGAGGGGACTGGT 61.154 60.000 3.53 0.00 44.43 4.00
3141 3545 5.335191 CCAGGCTGATACAAGTTTTGTTCTC 60.335 44.000 17.94 0.00 42.22 2.87
3189 3593 1.373570 AGGCGCTTCTTTATCACAGC 58.626 50.000 7.64 0.00 0.00 4.40
3463 3871 2.490903 AGTCATTCAGTTGCATGCCTTC 59.509 45.455 16.68 5.49 0.00 3.46
3519 4248 4.082125 CCTTTGAGGTGCCAAGTTTCTAT 58.918 43.478 0.00 0.00 0.00 1.98
3547 4277 3.799281 CAAGTTTTGCCCTCACAAAGA 57.201 42.857 0.00 0.00 40.43 2.52
3563 4293 7.175641 CCTCACAAAGAGTTATCCAAAGTGATT 59.824 37.037 0.00 0.00 43.12 2.57
3589 4345 7.068593 TGTGTCATGAAGTCAAAAGGAAAATCT 59.931 33.333 0.00 0.00 0.00 2.40
3603 4359 7.486407 AAGGAAAATCTCAAGGCATGTAAAT 57.514 32.000 0.00 0.00 0.00 1.40
3624 4380 9.294030 GTAAATGTGCTATTCTTCCAAATCAAG 57.706 33.333 0.00 0.00 0.00 3.02
3719 4478 3.378742 ACACTGAATTGTTGTTGGCGTTA 59.621 39.130 0.00 0.00 0.00 3.18
3788 4550 2.823924 TTGGTACGCAGTCAAGCTAA 57.176 45.000 0.00 0.00 43.93 3.09
3792 4554 4.823157 TGGTACGCAGTCAAGCTAAAATA 58.177 39.130 0.00 0.00 43.93 1.40
3802 4564 9.573133 GCAGTCAAGCTAAAATAACACAAATAT 57.427 29.630 0.00 0.00 0.00 1.28
3951 4763 5.309282 CCCTATCCTGGAGATTAGAAAAGCT 59.691 44.000 1.52 0.00 36.33 3.74
4017 4855 7.124147 TCTGTCCATTTTCTCAACCTTTCTTTT 59.876 33.333 0.00 0.00 0.00 2.27
4090 4933 5.690464 ACCTTCTTACTGCAAGAGATGAT 57.310 39.130 0.00 0.00 44.10 2.45
4091 4934 5.426504 ACCTTCTTACTGCAAGAGATGATG 58.573 41.667 0.00 0.00 44.10 3.07
4093 4936 5.396101 CCTTCTTACTGCAAGAGATGATGGA 60.396 44.000 0.00 0.00 44.10 3.41
4195 5065 3.932710 CGCAACAGGAACAAGCTATTAGA 59.067 43.478 0.00 0.00 0.00 2.10
4254 5132 1.868713 TTGTCGGGGATAACCAGCTA 58.131 50.000 0.00 0.00 42.91 3.32
4300 5180 3.117552 AGGGGTTGTTCCTCTAGTAGG 57.882 52.381 0.00 2.70 46.91 3.18
4362 5251 4.435386 GCATCGCACTTCTCTTTCTTCTTC 60.435 45.833 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 9.528018 CTAGCTGTTTTCTTTTGGTTTTCATTA 57.472 29.630 0.00 0.00 0.00 1.90
97 98 8.257306 TCTAGCTGTTTTCTTTTGGTTTTCATT 58.743 29.630 0.00 0.00 0.00 2.57
99 100 7.164230 TCTAGCTGTTTTCTTTTGGTTTTCA 57.836 32.000 0.00 0.00 0.00 2.69
100 101 8.474006 TTTCTAGCTGTTTTCTTTTGGTTTTC 57.526 30.769 0.00 0.00 0.00 2.29
213 217 6.418819 GCAAAGATGACCACATATGCATTTAC 59.581 38.462 3.54 0.00 38.90 2.01
223 227 3.119245 GCAATGAGCAAAGATGACCACAT 60.119 43.478 0.00 0.00 44.79 3.21
224 228 2.229543 GCAATGAGCAAAGATGACCACA 59.770 45.455 0.00 0.00 44.79 4.17
225 229 2.872370 GCAATGAGCAAAGATGACCAC 58.128 47.619 0.00 0.00 44.79 4.16
248 253 2.742053 GGCTACTGAATTTGCTTCACGA 59.258 45.455 0.00 0.00 38.97 4.35
275 280 2.704190 ATAGGCCCTTAGCTAGCTCA 57.296 50.000 23.26 9.92 43.05 4.26
276 281 2.094442 CGAATAGGCCCTTAGCTAGCTC 60.094 54.545 23.26 6.12 43.05 4.09
277 282 1.896465 CGAATAGGCCCTTAGCTAGCT 59.104 52.381 23.12 23.12 43.05 3.32
278 283 1.066787 CCGAATAGGCCCTTAGCTAGC 60.067 57.143 6.62 6.62 43.05 3.42
279 284 2.249139 ACCGAATAGGCCCTTAGCTAG 58.751 52.381 0.00 0.00 46.52 3.42
280 285 2.393630 ACCGAATAGGCCCTTAGCTA 57.606 50.000 0.00 0.00 46.52 3.32
281 286 1.508256 AACCGAATAGGCCCTTAGCT 58.492 50.000 0.00 0.00 46.52 3.32
282 287 1.947456 CAAACCGAATAGGCCCTTAGC 59.053 52.381 0.00 0.00 46.52 3.09
283 288 2.171870 TCCAAACCGAATAGGCCCTTAG 59.828 50.000 0.00 0.00 46.52 2.18
284 289 2.171870 CTCCAAACCGAATAGGCCCTTA 59.828 50.000 0.00 0.00 46.52 2.69
285 290 0.996583 TCCAAACCGAATAGGCCCTT 59.003 50.000 0.00 0.00 46.52 3.95
286 291 0.546598 CTCCAAACCGAATAGGCCCT 59.453 55.000 0.00 0.00 46.52 5.19
287 292 0.465642 CCTCCAAACCGAATAGGCCC 60.466 60.000 0.00 0.00 46.52 5.80
288 293 0.544697 TCCTCCAAACCGAATAGGCC 59.455 55.000 0.00 0.00 46.52 5.19
289 294 2.640316 ATCCTCCAAACCGAATAGGC 57.360 50.000 0.00 0.00 46.52 3.93
291 296 6.699575 ATGAAAATCCTCCAAACCGAATAG 57.300 37.500 0.00 0.00 0.00 1.73
292 297 7.570132 TCTATGAAAATCCTCCAAACCGAATA 58.430 34.615 0.00 0.00 0.00 1.75
293 298 6.423182 TCTATGAAAATCCTCCAAACCGAAT 58.577 36.000 0.00 0.00 0.00 3.34
294 299 5.811190 TCTATGAAAATCCTCCAAACCGAA 58.189 37.500 0.00 0.00 0.00 4.30
295 300 5.429681 TCTATGAAAATCCTCCAAACCGA 57.570 39.130 0.00 0.00 0.00 4.69
296 301 6.509418 TTTCTATGAAAATCCTCCAAACCG 57.491 37.500 0.00 0.00 0.00 4.44
297 302 7.598869 GTGTTTTCTATGAAAATCCTCCAAACC 59.401 37.037 8.43 0.00 0.00 3.27
298 303 8.141268 TGTGTTTTCTATGAAAATCCTCCAAAC 58.859 33.333 8.43 0.00 0.00 2.93
299 304 8.243961 TGTGTTTTCTATGAAAATCCTCCAAA 57.756 30.769 8.43 0.00 0.00 3.28
300 305 7.831691 TGTGTTTTCTATGAAAATCCTCCAA 57.168 32.000 8.43 0.00 0.00 3.53
301 306 9.177608 CTATGTGTTTTCTATGAAAATCCTCCA 57.822 33.333 8.43 0.43 0.00 3.86
302 307 8.624776 CCTATGTGTTTTCTATGAAAATCCTCC 58.375 37.037 8.43 0.00 0.00 4.30
303 308 9.396022 TCCTATGTGTTTTCTATGAAAATCCTC 57.604 33.333 8.43 0.00 0.00 3.71
304 309 9.753674 TTCCTATGTGTTTTCTATGAAAATCCT 57.246 29.630 8.43 2.99 0.00 3.24
305 310 9.788960 GTTCCTATGTGTTTTCTATGAAAATCC 57.211 33.333 8.43 4.11 0.00 3.01
309 314 8.792633 CCTTGTTCCTATGTGTTTTCTATGAAA 58.207 33.333 0.00 0.00 0.00 2.69
310 315 8.160765 TCCTTGTTCCTATGTGTTTTCTATGAA 58.839 33.333 0.00 0.00 0.00 2.57
311 316 7.685481 TCCTTGTTCCTATGTGTTTTCTATGA 58.315 34.615 0.00 0.00 0.00 2.15
312 317 7.921786 TCCTTGTTCCTATGTGTTTTCTATG 57.078 36.000 0.00 0.00 0.00 2.23
313 318 7.775561 GGATCCTTGTTCCTATGTGTTTTCTAT 59.224 37.037 3.84 0.00 0.00 1.98
314 319 7.110155 GGATCCTTGTTCCTATGTGTTTTCTA 58.890 38.462 3.84 0.00 0.00 2.10
315 320 5.946377 GGATCCTTGTTCCTATGTGTTTTCT 59.054 40.000 3.84 0.00 0.00 2.52
316 321 5.125578 GGGATCCTTGTTCCTATGTGTTTTC 59.874 44.000 12.58 0.00 33.53 2.29
317 322 5.016831 GGGATCCTTGTTCCTATGTGTTTT 58.983 41.667 12.58 0.00 33.53 2.43
318 323 4.600062 GGGATCCTTGTTCCTATGTGTTT 58.400 43.478 12.58 0.00 33.53 2.83
319 324 3.370527 CGGGATCCTTGTTCCTATGTGTT 60.371 47.826 12.58 0.00 33.53 3.32
320 325 2.170607 CGGGATCCTTGTTCCTATGTGT 59.829 50.000 12.58 0.00 33.53 3.72
321 326 2.434336 TCGGGATCCTTGTTCCTATGTG 59.566 50.000 12.58 0.00 33.53 3.21
322 327 2.759355 TCGGGATCCTTGTTCCTATGT 58.241 47.619 12.58 0.00 33.53 2.29
323 328 3.495100 CCTTCGGGATCCTTGTTCCTATG 60.495 52.174 12.58 0.00 37.25 2.23
324 329 2.706190 CCTTCGGGATCCTTGTTCCTAT 59.294 50.000 12.58 0.00 37.25 2.57
325 330 2.116238 CCTTCGGGATCCTTGTTCCTA 58.884 52.381 12.58 0.00 37.25 2.94
326 331 0.912486 CCTTCGGGATCCTTGTTCCT 59.088 55.000 12.58 0.00 37.25 3.36
327 332 0.909623 TCCTTCGGGATCCTTGTTCC 59.090 55.000 12.58 0.00 39.58 3.62
328 333 2.781681 TTCCTTCGGGATCCTTGTTC 57.218 50.000 12.58 0.00 44.61 3.18
329 334 3.739401 ATTTCCTTCGGGATCCTTGTT 57.261 42.857 12.58 0.00 44.61 2.83
330 335 3.739401 AATTTCCTTCGGGATCCTTGT 57.261 42.857 12.58 0.00 44.61 3.16
331 336 4.706962 AGAAAATTTCCTTCGGGATCCTTG 59.293 41.667 12.58 4.88 44.61 3.61
332 337 4.935578 AGAAAATTTCCTTCGGGATCCTT 58.064 39.130 12.58 0.00 44.61 3.36
333 338 4.592997 AGAAAATTTCCTTCGGGATCCT 57.407 40.909 12.58 0.00 44.61 3.24
334 339 7.450903 TCTATAGAAAATTTCCTTCGGGATCC 58.549 38.462 1.92 1.92 44.61 3.36
335 340 8.940952 CATCTATAGAAAATTTCCTTCGGGATC 58.059 37.037 6.52 0.00 44.61 3.36
336 341 8.440771 ACATCTATAGAAAATTTCCTTCGGGAT 58.559 33.333 6.52 0.00 44.61 3.85
337 342 7.715249 CACATCTATAGAAAATTTCCTTCGGGA 59.285 37.037 6.52 0.00 43.37 5.14
338 343 7.499232 ACACATCTATAGAAAATTTCCTTCGGG 59.501 37.037 6.52 0.00 0.00 5.14
339 344 8.438676 ACACATCTATAGAAAATTTCCTTCGG 57.561 34.615 6.52 0.00 0.00 4.30
340 345 9.922305 GAACACATCTATAGAAAATTTCCTTCG 57.078 33.333 6.52 0.00 0.00 3.79
341 346 9.922305 CGAACACATCTATAGAAAATTTCCTTC 57.078 33.333 6.52 0.23 0.00 3.46
342 347 8.893727 CCGAACACATCTATAGAAAATTTCCTT 58.106 33.333 6.52 0.00 0.00 3.36
343 348 8.047310 ACCGAACACATCTATAGAAAATTTCCT 58.953 33.333 6.52 0.00 0.00 3.36
344 349 8.209917 ACCGAACACATCTATAGAAAATTTCC 57.790 34.615 6.52 0.00 0.00 3.13
346 351 9.840427 CAAACCGAACACATCTATAGAAAATTT 57.160 29.630 6.52 0.00 0.00 1.82
347 352 9.010029 ACAAACCGAACACATCTATAGAAAATT 57.990 29.630 6.52 0.00 0.00 1.82
348 353 8.561738 ACAAACCGAACACATCTATAGAAAAT 57.438 30.769 6.52 0.00 0.00 1.82
349 354 7.972832 ACAAACCGAACACATCTATAGAAAA 57.027 32.000 6.52 0.00 0.00 2.29
350 355 7.762615 CCTACAAACCGAACACATCTATAGAAA 59.237 37.037 6.52 0.00 0.00 2.52
351 356 7.123098 TCCTACAAACCGAACACATCTATAGAA 59.877 37.037 6.52 0.00 0.00 2.10
352 357 6.604396 TCCTACAAACCGAACACATCTATAGA 59.396 38.462 4.57 4.57 0.00 1.98
353 358 6.802608 TCCTACAAACCGAACACATCTATAG 58.197 40.000 0.00 0.00 0.00 1.31
354 359 6.778834 TCCTACAAACCGAACACATCTATA 57.221 37.500 0.00 0.00 0.00 1.31
355 360 5.670792 TCCTACAAACCGAACACATCTAT 57.329 39.130 0.00 0.00 0.00 1.98
356 361 5.471556 TTCCTACAAACCGAACACATCTA 57.528 39.130 0.00 0.00 0.00 1.98
357 362 4.345859 TTCCTACAAACCGAACACATCT 57.654 40.909 0.00 0.00 0.00 2.90
358 363 5.048991 ACATTTCCTACAAACCGAACACATC 60.049 40.000 0.00 0.00 0.00 3.06
359 364 4.825085 ACATTTCCTACAAACCGAACACAT 59.175 37.500 0.00 0.00 0.00 3.21
360 365 4.035792 CACATTTCCTACAAACCGAACACA 59.964 41.667 0.00 0.00 0.00 3.72
361 366 4.035909 ACACATTTCCTACAAACCGAACAC 59.964 41.667 0.00 0.00 0.00 3.32
362 367 4.200874 ACACATTTCCTACAAACCGAACA 58.799 39.130 0.00 0.00 0.00 3.18
363 368 4.823790 ACACATTTCCTACAAACCGAAC 57.176 40.909 0.00 0.00 0.00 3.95
364 369 6.819649 CCTATACACATTTCCTACAAACCGAA 59.180 38.462 0.00 0.00 0.00 4.30
365 370 6.154877 TCCTATACACATTTCCTACAAACCGA 59.845 38.462 0.00 0.00 0.00 4.69
366 371 6.342906 TCCTATACACATTTCCTACAAACCG 58.657 40.000 0.00 0.00 0.00 4.44
367 372 8.747538 ATTCCTATACACATTTCCTACAAACC 57.252 34.615 0.00 0.00 0.00 3.27
370 375 9.104965 CGAAATTCCTATACACATTTCCTACAA 57.895 33.333 0.00 0.00 33.73 2.41
371 376 8.262227 ACGAAATTCCTATACACATTTCCTACA 58.738 33.333 0.00 0.00 33.73 2.74
372 377 8.658499 ACGAAATTCCTATACACATTTCCTAC 57.342 34.615 0.00 0.00 33.73 3.18
373 378 9.976511 CTACGAAATTCCTATACACATTTCCTA 57.023 33.333 0.00 0.00 33.73 2.94
374 379 7.931948 CCTACGAAATTCCTATACACATTTCCT 59.068 37.037 0.00 0.00 33.73 3.36
375 380 7.929785 TCCTACGAAATTCCTATACACATTTCC 59.070 37.037 0.00 0.00 33.73 3.13
376 381 8.882415 TCCTACGAAATTCCTATACACATTTC 57.118 34.615 0.00 0.00 33.88 2.17
377 382 9.847224 ATTCCTACGAAATTCCTATACACATTT 57.153 29.630 0.00 0.00 0.00 2.32
379 384 9.924650 GTATTCCTACGAAATTCCTATACACAT 57.075 33.333 0.00 0.00 0.00 3.21
380 385 9.139734 AGTATTCCTACGAAATTCCTATACACA 57.860 33.333 0.00 0.00 32.82 3.72
401 406 9.927668 CCAAAAACACAGGAAATGAATAGTATT 57.072 29.630 0.00 0.00 0.00 1.89
402 407 9.308000 TCCAAAAACACAGGAAATGAATAGTAT 57.692 29.630 0.00 0.00 0.00 2.12
403 408 8.698973 TCCAAAAACACAGGAAATGAATAGTA 57.301 30.769 0.00 0.00 0.00 1.82
404 409 7.505585 TCTCCAAAAACACAGGAAATGAATAGT 59.494 33.333 0.00 0.00 0.00 2.12
405 410 7.885297 TCTCCAAAAACACAGGAAATGAATAG 58.115 34.615 0.00 0.00 0.00 1.73
406 411 7.831691 TCTCCAAAAACACAGGAAATGAATA 57.168 32.000 0.00 0.00 0.00 1.75
407 412 6.729690 TCTCCAAAAACACAGGAAATGAAT 57.270 33.333 0.00 0.00 0.00 2.57
408 413 6.537453 TTCTCCAAAAACACAGGAAATGAA 57.463 33.333 0.00 0.00 0.00 2.57
409 414 6.537453 TTTCTCCAAAAACACAGGAAATGA 57.463 33.333 0.00 0.00 0.00 2.57
410 415 7.790823 ATTTTCTCCAAAAACACAGGAAATG 57.209 32.000 0.00 0.00 35.10 2.32
411 416 9.325198 GTAATTTTCTCCAAAAACACAGGAAAT 57.675 29.630 0.00 0.00 35.10 2.17
412 417 8.314751 TGTAATTTTCTCCAAAAACACAGGAAA 58.685 29.630 0.00 0.00 35.10 3.13
413 418 7.762159 GTGTAATTTTCTCCAAAAACACAGGAA 59.238 33.333 9.00 0.00 41.10 3.36
414 419 7.093727 TGTGTAATTTTCTCCAAAAACACAGGA 60.094 33.333 11.26 0.00 43.52 3.86
415 420 7.038659 TGTGTAATTTTCTCCAAAAACACAGG 58.961 34.615 11.26 0.00 43.52 4.00
418 423 7.708752 TGGATGTGTAATTTTCTCCAAAAACAC 59.291 33.333 7.67 7.67 41.44 3.32
419 424 7.708752 GTGGATGTGTAATTTTCTCCAAAAACA 59.291 33.333 0.00 0.00 35.10 2.83
420 425 7.926018 AGTGGATGTGTAATTTTCTCCAAAAAC 59.074 33.333 0.00 0.00 35.10 2.43
421 426 8.017418 AGTGGATGTGTAATTTTCTCCAAAAA 57.983 30.769 0.00 0.00 35.10 1.94
422 427 7.286546 TGAGTGGATGTGTAATTTTCTCCAAAA 59.713 33.333 0.00 0.00 34.75 2.44
423 428 6.775142 TGAGTGGATGTGTAATTTTCTCCAAA 59.225 34.615 0.00 0.00 34.75 3.28
424 429 6.303054 TGAGTGGATGTGTAATTTTCTCCAA 58.697 36.000 0.00 0.00 34.75 3.53
425 430 5.875224 TGAGTGGATGTGTAATTTTCTCCA 58.125 37.500 0.00 0.00 0.00 3.86
426 431 6.817765 TTGAGTGGATGTGTAATTTTCTCC 57.182 37.500 0.00 0.00 0.00 3.71
427 432 6.803807 GCTTTGAGTGGATGTGTAATTTTCTC 59.196 38.462 0.00 0.00 0.00 2.87
428 433 6.491403 AGCTTTGAGTGGATGTGTAATTTTCT 59.509 34.615 0.00 0.00 0.00 2.52
429 434 6.681777 AGCTTTGAGTGGATGTGTAATTTTC 58.318 36.000 0.00 0.00 0.00 2.29
430 435 6.265196 TGAGCTTTGAGTGGATGTGTAATTTT 59.735 34.615 0.00 0.00 0.00 1.82
431 436 5.769662 TGAGCTTTGAGTGGATGTGTAATTT 59.230 36.000 0.00 0.00 0.00 1.82
432 437 5.316167 TGAGCTTTGAGTGGATGTGTAATT 58.684 37.500 0.00 0.00 0.00 1.40
433 438 4.910195 TGAGCTTTGAGTGGATGTGTAAT 58.090 39.130 0.00 0.00 0.00 1.89
434 439 4.350368 TGAGCTTTGAGTGGATGTGTAA 57.650 40.909 0.00 0.00 0.00 2.41
435 440 4.558226 ATGAGCTTTGAGTGGATGTGTA 57.442 40.909 0.00 0.00 0.00 2.90
436 441 2.936919 TGAGCTTTGAGTGGATGTGT 57.063 45.000 0.00 0.00 0.00 3.72
437 442 4.778534 AAATGAGCTTTGAGTGGATGTG 57.221 40.909 0.00 0.00 0.00 3.21
438 443 4.560108 GCAAAATGAGCTTTGAGTGGATGT 60.560 41.667 0.00 0.00 38.35 3.06
439 444 3.924686 GCAAAATGAGCTTTGAGTGGATG 59.075 43.478 0.00 0.00 38.35 3.51
440 445 3.366679 CGCAAAATGAGCTTTGAGTGGAT 60.367 43.478 0.00 0.00 38.35 3.41
441 446 2.030893 CGCAAAATGAGCTTTGAGTGGA 60.031 45.455 0.00 0.00 38.35 4.02
442 447 2.322161 CGCAAAATGAGCTTTGAGTGG 58.678 47.619 0.00 0.00 38.35 4.00
443 448 1.717645 GCGCAAAATGAGCTTTGAGTG 59.282 47.619 0.30 0.00 40.12 3.51
444 449 1.664016 CGCGCAAAATGAGCTTTGAGT 60.664 47.619 8.75 0.00 41.12 3.41
445 450 0.979811 CGCGCAAAATGAGCTTTGAG 59.020 50.000 8.75 0.00 41.12 3.02
446 451 0.310543 ACGCGCAAAATGAGCTTTGA 59.689 45.000 5.73 0.00 41.12 2.69
447 452 1.906966 CTACGCGCAAAATGAGCTTTG 59.093 47.619 5.73 0.00 41.12 2.77
448 453 1.135689 CCTACGCGCAAAATGAGCTTT 60.136 47.619 5.73 0.00 41.12 3.51
449 454 0.447801 CCTACGCGCAAAATGAGCTT 59.552 50.000 5.73 0.00 41.12 3.74
450 455 0.391130 TCCTACGCGCAAAATGAGCT 60.391 50.000 5.73 0.00 41.12 4.09
451 456 0.446222 TTCCTACGCGCAAAATGAGC 59.554 50.000 5.73 0.00 39.86 4.26
452 457 1.526986 CGTTCCTACGCGCAAAATGAG 60.527 52.381 5.73 0.00 41.41 2.90
453 458 0.440758 CGTTCCTACGCGCAAAATGA 59.559 50.000 5.73 0.00 41.41 2.57
454 459 2.911198 CGTTCCTACGCGCAAAATG 58.089 52.632 5.73 0.00 41.41 2.32
464 469 2.104530 GGCTCGCCTCGTTCCTAC 59.895 66.667 0.00 0.00 0.00 3.18
465 470 1.327690 ATTGGCTCGCCTCGTTCCTA 61.328 55.000 9.65 0.00 36.94 2.94
466 471 2.185310 AATTGGCTCGCCTCGTTCCT 62.185 55.000 9.65 0.00 36.94 3.36
467 472 1.706287 GAATTGGCTCGCCTCGTTCC 61.706 60.000 9.65 0.00 36.94 3.62
468 473 1.706287 GGAATTGGCTCGCCTCGTTC 61.706 60.000 9.65 9.94 36.94 3.95
469 474 1.745489 GGAATTGGCTCGCCTCGTT 60.745 57.895 9.65 1.50 36.94 3.85
470 475 2.125106 GGAATTGGCTCGCCTCGT 60.125 61.111 9.65 0.00 36.94 4.18
471 476 0.179084 TAAGGAATTGGCTCGCCTCG 60.179 55.000 9.65 0.00 36.94 4.63
472 477 1.587547 CTAAGGAATTGGCTCGCCTC 58.412 55.000 9.65 0.00 36.94 4.70
473 478 0.181350 CCTAAGGAATTGGCTCGCCT 59.819 55.000 9.65 0.00 36.94 5.52
474 479 0.819666 CCCTAAGGAATTGGCTCGCC 60.820 60.000 0.00 0.00 33.47 5.54
475 480 0.107165 ACCCTAAGGAATTGGCTCGC 60.107 55.000 0.00 0.00 36.73 5.03
476 481 1.668419 CACCCTAAGGAATTGGCTCG 58.332 55.000 0.00 0.00 36.73 5.03
477 482 2.024306 GCCACCCTAAGGAATTGGCTC 61.024 57.143 13.70 0.00 37.90 4.70
478 483 0.033109 GCCACCCTAAGGAATTGGCT 60.033 55.000 13.70 0.00 37.90 4.75
479 484 0.324275 TGCCACCCTAAGGAATTGGC 60.324 55.000 13.96 13.96 40.97 4.52
480 485 2.102578 CTTGCCACCCTAAGGAATTGG 58.897 52.381 0.00 0.00 36.73 3.16
481 486 2.493278 CACTTGCCACCCTAAGGAATTG 59.507 50.000 0.00 0.00 36.73 2.32
482 487 2.807676 CACTTGCCACCCTAAGGAATT 58.192 47.619 0.00 0.00 36.73 2.17
483 488 1.616994 GCACTTGCCACCCTAAGGAAT 60.617 52.381 0.00 0.00 33.82 3.01
484 489 0.251165 GCACTTGCCACCCTAAGGAA 60.251 55.000 0.00 0.00 33.82 3.36
485 490 1.378762 GCACTTGCCACCCTAAGGA 59.621 57.895 0.00 0.00 33.82 3.36
486 491 4.002797 GCACTTGCCACCCTAAGG 57.997 61.111 0.00 0.00 35.24 2.69
496 501 5.302823 AGGAATTTTATAGGATGGCACTTGC 59.697 40.000 0.00 0.00 41.14 4.01
497 502 6.966534 AGGAATTTTATAGGATGGCACTTG 57.033 37.500 0.00 0.00 0.00 3.16
498 503 9.740710 GTATAGGAATTTTATAGGATGGCACTT 57.259 33.333 0.00 0.00 0.00 3.16
499 504 8.329502 GGTATAGGAATTTTATAGGATGGCACT 58.670 37.037 0.00 0.00 0.00 4.40
500 505 8.107095 TGGTATAGGAATTTTATAGGATGGCAC 58.893 37.037 0.00 0.00 0.00 5.01
501 506 8.225863 TGGTATAGGAATTTTATAGGATGGCA 57.774 34.615 0.00 0.00 0.00 4.92
502 507 8.329502 ACTGGTATAGGAATTTTATAGGATGGC 58.670 37.037 0.00 0.00 0.00 4.40
503 508 9.892130 GACTGGTATAGGAATTTTATAGGATGG 57.108 37.037 0.00 0.00 0.00 3.51
504 509 9.892130 GGACTGGTATAGGAATTTTATAGGATG 57.108 37.037 0.00 0.00 0.00 3.51
505 510 9.860393 AGGACTGGTATAGGAATTTTATAGGAT 57.140 33.333 0.00 0.00 0.00 3.24
512 517 9.015146 AGGAATTAGGACTGGTATAGGAATTTT 57.985 33.333 0.00 0.00 0.00 1.82
513 518 8.582891 AGGAATTAGGACTGGTATAGGAATTT 57.417 34.615 0.00 0.00 0.00 1.82
514 519 9.102453 GTAGGAATTAGGACTGGTATAGGAATT 57.898 37.037 0.00 0.00 0.00 2.17
515 520 7.396623 CGTAGGAATTAGGACTGGTATAGGAAT 59.603 40.741 0.00 0.00 0.00 3.01
516 521 6.718454 CGTAGGAATTAGGACTGGTATAGGAA 59.282 42.308 0.00 0.00 0.00 3.36
517 522 6.183361 ACGTAGGAATTAGGACTGGTATAGGA 60.183 42.308 0.00 0.00 0.00 2.94
518 523 6.008960 ACGTAGGAATTAGGACTGGTATAGG 58.991 44.000 0.00 0.00 0.00 2.57
519 524 7.521871 AACGTAGGAATTAGGACTGGTATAG 57.478 40.000 0.00 0.00 0.00 1.31
520 525 9.017509 CATAACGTAGGAATTAGGACTGGTATA 57.982 37.037 0.00 0.00 0.00 1.47
521 526 7.727186 TCATAACGTAGGAATTAGGACTGGTAT 59.273 37.037 0.00 0.00 0.00 2.73
522 527 7.062322 TCATAACGTAGGAATTAGGACTGGTA 58.938 38.462 0.00 0.00 0.00 3.25
523 528 5.895534 TCATAACGTAGGAATTAGGACTGGT 59.104 40.000 0.00 0.00 0.00 4.00
524 529 6.401047 TCATAACGTAGGAATTAGGACTGG 57.599 41.667 0.00 0.00 0.00 4.00
525 530 8.888579 ATTTCATAACGTAGGAATTAGGACTG 57.111 34.615 0.00 0.00 0.00 3.51
526 531 8.148999 GGATTTCATAACGTAGGAATTAGGACT 58.851 37.037 0.00 0.00 0.00 3.85
527 532 8.148999 AGGATTTCATAACGTAGGAATTAGGAC 58.851 37.037 0.00 0.00 0.00 3.85
528 533 8.258850 AGGATTTCATAACGTAGGAATTAGGA 57.741 34.615 0.00 0.00 0.00 2.94
529 534 7.603024 GGAGGATTTCATAACGTAGGAATTAGG 59.397 40.741 0.00 0.00 0.00 2.69
530 535 8.148351 TGGAGGATTTCATAACGTAGGAATTAG 58.852 37.037 0.00 0.00 0.00 1.73
531 536 8.025270 TGGAGGATTTCATAACGTAGGAATTA 57.975 34.615 0.00 0.00 0.00 1.40
532 537 6.895782 TGGAGGATTTCATAACGTAGGAATT 58.104 36.000 0.00 0.00 0.00 2.17
533 538 6.494666 TGGAGGATTTCATAACGTAGGAAT 57.505 37.500 0.00 0.00 0.00 3.01
534 539 5.943349 TGGAGGATTTCATAACGTAGGAA 57.057 39.130 0.00 0.00 0.00 3.36
535 540 5.943349 TTGGAGGATTTCATAACGTAGGA 57.057 39.130 0.00 0.00 0.00 2.94
536 541 5.296035 GGTTTGGAGGATTTCATAACGTAGG 59.704 44.000 0.00 0.00 0.00 3.18
537 542 5.006358 CGGTTTGGAGGATTTCATAACGTAG 59.994 44.000 0.00 0.00 0.00 3.51
538 543 4.871557 CGGTTTGGAGGATTTCATAACGTA 59.128 41.667 0.00 0.00 0.00 3.57
539 544 3.687698 CGGTTTGGAGGATTTCATAACGT 59.312 43.478 0.00 0.00 0.00 3.99
540 545 3.936453 TCGGTTTGGAGGATTTCATAACG 59.064 43.478 0.00 0.00 0.00 3.18
541 546 5.890424 TTCGGTTTGGAGGATTTCATAAC 57.110 39.130 0.00 0.00 0.00 1.89
542 547 6.184068 TCATTCGGTTTGGAGGATTTCATAA 58.816 36.000 0.00 0.00 0.00 1.90
543 548 5.750524 TCATTCGGTTTGGAGGATTTCATA 58.249 37.500 0.00 0.00 0.00 2.15
544 549 4.599041 TCATTCGGTTTGGAGGATTTCAT 58.401 39.130 0.00 0.00 0.00 2.57
545 550 4.009675 CTCATTCGGTTTGGAGGATTTCA 58.990 43.478 0.00 0.00 0.00 2.69
546 551 3.181496 GCTCATTCGGTTTGGAGGATTTC 60.181 47.826 0.00 0.00 0.00 2.17
547 552 2.755103 GCTCATTCGGTTTGGAGGATTT 59.245 45.455 0.00 0.00 0.00 2.17
548 553 2.369394 GCTCATTCGGTTTGGAGGATT 58.631 47.619 0.00 0.00 0.00 3.01
549 554 1.408822 GGCTCATTCGGTTTGGAGGAT 60.409 52.381 0.00 0.00 0.00 3.24
550 555 0.035439 GGCTCATTCGGTTTGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
551 556 1.032114 GGGCTCATTCGGTTTGGAGG 61.032 60.000 0.00 0.00 0.00 4.30
552 557 0.035056 AGGGCTCATTCGGTTTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
553 558 1.281419 TAGGGCTCATTCGGTTTGGA 58.719 50.000 0.00 0.00 0.00 3.53
554 559 2.017049 CTTAGGGCTCATTCGGTTTGG 58.983 52.381 0.00 0.00 0.00 3.28
555 560 2.711542 ACTTAGGGCTCATTCGGTTTG 58.288 47.619 0.00 0.00 0.00 2.93
556 561 3.244770 TGAACTTAGGGCTCATTCGGTTT 60.245 43.478 0.00 0.00 0.00 3.27
557 562 2.304761 TGAACTTAGGGCTCATTCGGTT 59.695 45.455 0.00 0.00 0.00 4.44
558 563 1.906574 TGAACTTAGGGCTCATTCGGT 59.093 47.619 0.00 0.00 0.00 4.69
559 564 2.093447 ACTGAACTTAGGGCTCATTCGG 60.093 50.000 0.00 0.00 0.00 4.30
560 565 3.252974 ACTGAACTTAGGGCTCATTCG 57.747 47.619 0.00 0.00 0.00 3.34
561 566 5.966742 AAAACTGAACTTAGGGCTCATTC 57.033 39.130 0.00 0.00 0.00 2.67
562 567 5.598417 ACAAAAACTGAACTTAGGGCTCATT 59.402 36.000 0.00 0.00 0.00 2.57
563 568 5.140454 ACAAAAACTGAACTTAGGGCTCAT 58.860 37.500 0.00 0.00 0.00 2.90
564 569 4.532834 ACAAAAACTGAACTTAGGGCTCA 58.467 39.130 0.00 0.00 0.00 4.26
565 570 6.628919 TTACAAAAACTGAACTTAGGGCTC 57.371 37.500 0.00 0.00 0.00 4.70
566 571 8.700439 TTATTACAAAAACTGAACTTAGGGCT 57.300 30.769 0.00 0.00 0.00 5.19
567 572 8.573885 ACTTATTACAAAAACTGAACTTAGGGC 58.426 33.333 0.00 0.00 0.00 5.19
568 573 9.893305 CACTTATTACAAAAACTGAACTTAGGG 57.107 33.333 0.00 0.00 0.00 3.53
574 579 9.434559 GTCTGACACTTATTACAAAAACTGAAC 57.565 33.333 2.24 0.00 0.00 3.18
596 601 4.940046 AGGTTCATGCATCTAACTTGTCTG 59.060 41.667 16.92 0.00 0.00 3.51
601 606 4.521146 CAGGAGGTTCATGCATCTAACTT 58.479 43.478 16.92 11.83 0.00 2.66
606 611 0.549950 CCCAGGAGGTTCATGCATCT 59.450 55.000 0.00 0.00 0.00 2.90
630 635 3.670625 TCGTTCACTAGTTGGGGAATTG 58.329 45.455 0.00 0.00 0.00 2.32
668 673 8.605947 AGACCATCATGGCTAGCTTTATTAATA 58.394 33.333 15.72 0.00 42.67 0.98
671 676 6.439636 AGACCATCATGGCTAGCTTTATTA 57.560 37.500 15.72 0.00 42.67 0.98
672 677 5.312079 GAGACCATCATGGCTAGCTTTATT 58.688 41.667 15.72 0.00 42.67 1.40
691 700 9.601810 ATTTATTTATTTATTGGGGAGGGAGAC 57.398 33.333 0.00 0.00 0.00 3.36
766 776 9.618890 ACAAAGTCACTACAGATGCATTTATAT 57.381 29.630 0.00 0.00 0.00 0.86
767 777 9.098355 GACAAAGTCACTACAGATGCATTTATA 57.902 33.333 0.00 0.00 32.09 0.98
779 789 9.602568 TTTAACTACATTGACAAAGTCACTACA 57.397 29.630 0.00 0.00 42.60 2.74
808 820 5.903010 ACCTTTTTCTCTAAAAATGTGGGGT 59.097 36.000 4.25 2.49 42.22 4.95
830 843 2.551032 CCAAGTCCTCGTTTAACCAACC 59.449 50.000 0.00 0.00 30.65 3.77
831 844 3.249320 GTCCAAGTCCTCGTTTAACCAAC 59.751 47.826 0.00 0.00 0.00 3.77
852 865 4.385977 GGCCACTTTGGTTAGTATATGGGT 60.386 45.833 0.00 0.00 40.46 4.51
856 869 5.445964 CTTGGGCCACTTTGGTTAGTATAT 58.554 41.667 5.23 0.00 40.46 0.86
857 870 4.850680 CTTGGGCCACTTTGGTTAGTATA 58.149 43.478 5.23 0.00 40.46 1.47
867 880 0.396974 TTGTCTGCTTGGGCCACTTT 60.397 50.000 5.23 0.00 37.74 2.66
936 949 3.982058 AGAGAAGACTTTGCTTCGTTACG 59.018 43.478 0.00 0.00 46.81 3.18
979 992 2.293122 TCGCATGGTTTCTTTGGAACTG 59.707 45.455 0.00 0.00 0.00 3.16
1114 1141 2.036098 TTGCTGGAGGTGGCATGG 59.964 61.111 0.00 0.00 38.30 3.66
1158 1185 3.258225 GATGTGGTCATCGAGGTCG 57.742 57.895 0.00 0.00 40.55 4.79
1304 1331 2.021068 GAGCATGGCAGCGTAGAGGA 62.021 60.000 0.00 0.00 40.15 3.71
1884 1919 0.457851 CGCAAACCACAAAACCTCCA 59.542 50.000 0.00 0.00 0.00 3.86
1890 1925 1.142748 CCTGCCGCAAACCACAAAA 59.857 52.632 0.00 0.00 0.00 2.44
1899 1934 3.664025 CTCCGTCATCCTGCCGCAA 62.664 63.158 0.00 0.00 0.00 4.85
2043 2219 0.457337 GGCCAGATTTCGCAAGCAAG 60.457 55.000 0.00 0.00 37.18 4.01
2196 2600 1.616865 GCCATGCCATTCTGCACATAT 59.383 47.619 0.00 0.00 45.48 1.78
2334 2738 2.672996 ACGGAACCATGGCTGCAC 60.673 61.111 13.04 0.00 0.00 4.57
2376 2780 2.877168 CAAGGCATTGCAGATAGAGGTC 59.123 50.000 11.39 0.00 0.00 3.85
2478 2882 4.002906 TCCCGCAATCATAGTATTCCAC 57.997 45.455 0.00 0.00 0.00 4.02
2523 2927 1.963338 GAACAGCGCAGTGGCTTCT 60.963 57.895 11.47 0.00 42.53 2.85
2562 2966 0.107643 TGACGCCATCAGGTTCACAA 59.892 50.000 0.00 0.00 37.19 3.33
2661 3065 8.202461 CCATCCTTGGAGTTATACCATACTTA 57.798 38.462 0.00 0.00 46.92 2.24
2847 3251 4.837860 CCTAGTTTCTGGATCATCCTAGCT 59.162 45.833 4.96 0.00 37.46 3.32
3141 3545 4.833478 TTCCTCTTCCTCAAGATCTTGG 57.167 45.455 30.33 21.47 38.02 3.61
3463 3871 7.615582 TGAAGTTCTAAATGCTCCACTATTG 57.384 36.000 4.17 0.00 0.00 1.90
3547 4277 6.942005 TCATGACACAATCACTTTGGATAACT 59.058 34.615 0.00 0.00 41.24 2.24
3563 4293 6.522625 TTTTCCTTTTGACTTCATGACACA 57.477 33.333 0.00 0.00 0.00 3.72
3589 4345 5.887598 AGAATAGCACATTTACATGCCTTGA 59.112 36.000 0.00 0.00 43.12 3.02
3603 4359 4.766373 TGCTTGATTTGGAAGAATAGCACA 59.234 37.500 0.00 0.00 29.94 4.57
3802 4564 9.303116 TGGGATTTCTACTAAAAATGCAAGTTA 57.697 29.630 0.00 0.00 36.50 2.24
3951 4763 7.233389 AGAGTCTAACTTCACTTGCTGATTA 57.767 36.000 0.00 0.00 0.00 1.75
3992 4830 6.396829 AAGAAAGGTTGAGAAAATGGACAG 57.603 37.500 0.00 0.00 0.00 3.51
4017 4855 8.389779 TGAACAGAAAGCAACTAATTATGTCA 57.610 30.769 0.00 0.00 29.10 3.58
4035 4873 4.142622 CCGCTAATGATGCTTTTGAACAGA 60.143 41.667 0.00 0.00 0.00 3.41
4090 4933 4.517285 GCTGAACAAGTTCCTGATATCCA 58.483 43.478 10.19 0.00 38.77 3.41
4091 4934 3.557595 CGCTGAACAAGTTCCTGATATCC 59.442 47.826 10.19 0.00 38.77 2.59
4093 4936 4.160439 TCTCGCTGAACAAGTTCCTGATAT 59.840 41.667 10.19 0.00 38.77 1.63
4222 5100 2.294791 CCCCGACAAATAAAAGCACACA 59.705 45.455 0.00 0.00 0.00 3.72
4223 5101 2.554893 TCCCCGACAAATAAAAGCACAC 59.445 45.455 0.00 0.00 0.00 3.82
4254 5132 5.163088 ACCGATAGAGAAAAATTATGCCCCT 60.163 40.000 0.00 0.00 39.76 4.79
4298 5178 3.715648 AGGACCATGGAATCTACTCCT 57.284 47.619 21.47 15.39 36.35 3.69
4299 5179 5.280215 CCAATAGGACCATGGAATCTACTCC 60.280 48.000 21.47 13.11 36.27 3.85
4300 5180 5.799213 CCAATAGGACCATGGAATCTACTC 58.201 45.833 21.47 2.84 36.27 2.59
4301 5181 4.042187 GCCAATAGGACCATGGAATCTACT 59.958 45.833 21.47 4.10 36.27 2.57
4302 5182 4.327680 GCCAATAGGACCATGGAATCTAC 58.672 47.826 21.47 0.00 36.27 2.59
4303 5183 3.007940 CGCCAATAGGACCATGGAATCTA 59.992 47.826 21.47 16.02 36.27 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.