Multiple sequence alignment - TraesCS4A01G354100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G354100 chr4A 100.000 4809 0 0 1 4809 628847441 628852249 0.000000e+00 8881.0
1 TraesCS4A01G354100 chr4A 88.571 280 22 4 3815 4087 608002434 608002158 9.980000e-87 331.0
2 TraesCS4A01G354100 chr4A 89.734 263 19 4 3821 4076 641546265 641546526 3.590000e-86 329.0
3 TraesCS4A01G354100 chr4A 75.817 612 106 30 1846 2425 595283550 595282949 6.130000e-69 272.0
4 TraesCS4A01G354100 chr4A 86.036 222 20 4 4418 4638 629489115 629488904 1.350000e-55 228.0
5 TraesCS4A01G354100 chr4A 86.992 123 16 0 2661 2783 691397604 691397726 6.490000e-29 139.0
6 TraesCS4A01G354100 chr4A 80.597 134 21 5 4676 4808 629488828 629488699 1.100000e-16 99.0
7 TraesCS4A01G354100 chr5B 94.126 1464 70 10 1210 2669 681618430 681616979 0.000000e+00 2213.0
8 TraesCS4A01G354100 chr5B 91.074 1490 85 17 1131 2611 681345004 681343554 0.000000e+00 1971.0
9 TraesCS4A01G354100 chr5B 88.022 910 77 12 2813 3706 681616969 681616076 0.000000e+00 1048.0
10 TraesCS4A01G354100 chr5B 92.613 555 26 10 47 593 681350458 681349911 0.000000e+00 784.0
11 TraesCS4A01G354100 chr5B 92.070 454 24 4 3277 3726 681343164 681342719 3.160000e-176 628.0
12 TraesCS4A01G354100 chr5B 84.564 447 63 6 2027 2469 681738165 681738609 5.710000e-119 438.0
13 TraesCS4A01G354100 chr5B 85.714 259 24 10 1 256 681623338 681623090 1.330000e-65 261.0
14 TraesCS4A01G354100 chr5B 92.208 154 12 0 360 513 681622676 681622523 8.100000e-53 219.0
15 TraesCS4A01G354100 chr5B 95.041 121 5 1 1018 1137 681618547 681618427 6.350000e-44 189.0
16 TraesCS4A01G354100 chr5B 94.643 112 5 1 1018 1128 681345202 681345091 6.400000e-39 172.0
17 TraesCS4A01G354100 chr5B 88.525 122 9 4 3590 3706 681587640 681587519 5.020000e-30 143.0
18 TraesCS4A01G354100 chr5B 87.500 120 15 0 2665 2784 364483472 364483353 6.490000e-29 139.0
19 TraesCS4A01G354100 chr5B 84.158 101 12 3 4148 4246 240327579 240327677 1.420000e-15 95.3
20 TraesCS4A01G354100 chr5B 87.879 66 2 2 3730 3790 681342687 681342623 6.680000e-09 73.1
21 TraesCS4A01G354100 chrUn 92.165 1187 78 6 1279 2459 67357568 67358745 0.000000e+00 1663.0
22 TraesCS4A01G354100 chrUn 84.580 441 63 5 2027 2463 67332922 67333361 2.660000e-117 433.0
23 TraesCS4A01G354100 chrUn 89.180 305 17 3 3310 3606 67358742 67359038 2.730000e-97 366.0
24 TraesCS4A01G354100 chrUn 91.020 245 11 6 277 513 67355469 67355710 2.160000e-83 320.0
25 TraesCS4A01G354100 chrUn 87.295 244 15 4 1018 1255 67357350 67357583 1.030000e-66 265.0
26 TraesCS4A01G354100 chrUn 85.590 229 21 7 28 253 67355257 67355476 3.740000e-56 230.0
27 TraesCS4A01G354100 chrUn 87.903 124 15 0 2660 2783 22143584 22143707 3.880000e-31 147.0
28 TraesCS4A01G354100 chrUn 88.525 122 9 4 3590 3706 299312126 299312247 5.020000e-30 143.0
29 TraesCS4A01G354100 chrUn 86.667 60 8 0 2964 3023 87857617 87857676 3.110000e-07 67.6
30 TraesCS4A01G354100 chrUn 86.667 60 8 0 2964 3023 339439133 339439074 3.110000e-07 67.6
31 TraesCS4A01G354100 chrUn 86.667 60 8 0 2964 3023 465933974 465933915 3.110000e-07 67.6
32 TraesCS4A01G354100 chr5D 92.116 1002 32 15 1018 2010 539676307 539675344 0.000000e+00 1369.0
33 TraesCS4A01G354100 chr5D 89.291 691 54 6 1993 2667 539675323 539674637 0.000000e+00 848.0
34 TraesCS4A01G354100 chr5D 90.815 577 39 9 28 599 539691614 539691047 0.000000e+00 760.0
35 TraesCS4A01G354100 chr5D 87.290 535 36 10 3203 3726 539674169 539673656 2.490000e-162 582.0
36 TraesCS4A01G354100 chr5D 82.791 430 49 8 2782 3206 539674639 539674230 1.270000e-95 361.0
37 TraesCS4A01G354100 chr5D 83.562 146 15 8 2666 2809 98291352 98291214 1.400000e-25 128.0
38 TraesCS4A01G354100 chr3A 96.073 662 26 0 4148 4809 486326311 486325650 0.000000e+00 1079.0
39 TraesCS4A01G354100 chr3A 95.029 523 19 4 4147 4662 666119974 666120496 0.000000e+00 815.0
40 TraesCS4A01G354100 chr3A 90.114 263 18 3 3821 4076 65702418 65702679 7.710000e-88 335.0
41 TraesCS4A01G354100 chr3A 89.259 270 19 5 3814 4076 79442746 79443012 3.590000e-86 329.0
42 TraesCS4A01G354100 chr3A 99.346 153 1 0 4657 4809 666120522 666120674 1.320000e-70 278.0
43 TraesCS4A01G354100 chr3A 85.437 103 15 0 4149 4251 486325202 486325304 1.830000e-19 108.0
44 TraesCS4A01G354100 chr3A 80.189 106 13 8 4148 4249 714159401 714159300 6.680000e-09 73.1
45 TraesCS4A01G354100 chr5A 98.567 349 5 0 4461 4809 598528808 598528460 6.840000e-173 617.0
46 TraesCS4A01G354100 chr5A 98.696 230 3 0 4148 4377 598529065 598528836 4.480000e-110 409.0
47 TraesCS4A01G354100 chr5A 87.215 219 17 4 4418 4635 534264824 534265032 6.220000e-59 239.0
48 TraesCS4A01G354100 chr5A 85.417 96 14 0 4148 4243 127604513 127604608 3.060000e-17 100.0
49 TraesCS4A01G354100 chr5A 79.452 146 26 4 4664 4808 534265099 534265241 3.060000e-17 100.0
50 TraesCS4A01G354100 chr1A 95.845 361 6 2 666 1017 230443876 230444236 4.170000e-160 575.0
51 TraesCS4A01G354100 chr1A 89.734 263 19 3 3821 4076 515768879 515769140 3.590000e-86 329.0
52 TraesCS4A01G354100 chr7D 96.266 241 9 0 777 1017 329731255 329731015 3.490000e-106 396.0
53 TraesCS4A01G354100 chr7D 88.000 100 3 2 662 752 329731349 329731250 5.090000e-20 110.0
54 TraesCS4A01G354100 chr7D 94.444 36 2 0 3174 3209 183775272 183775237 6.720000e-04 56.5
55 TraesCS4A01G354100 chr4B 77.225 663 106 35 1792 2426 14653483 14652838 3.560000e-91 346.0
56 TraesCS4A01G354100 chr4B 88.235 119 14 0 2666 2784 669452463 669452581 5.020000e-30 143.0
57 TraesCS4A01G354100 chr4B 83.654 104 13 3 4148 4249 641406346 641406245 1.420000e-15 95.3
58 TraesCS4A01G354100 chr2A 90.226 266 18 3 3819 4077 653300492 653300228 1.660000e-89 340.0
59 TraesCS4A01G354100 chr2A 90.114 263 18 3 3821 4076 722827242 722826981 7.710000e-88 335.0
60 TraesCS4A01G354100 chr2A 89.831 118 12 0 2667 2784 653298592 653298475 8.340000e-33 152.0
61 TraesCS4A01G354100 chr2A 84.286 140 15 7 2661 2797 26851547 26851682 3.910000e-26 130.0
62 TraesCS4A01G354100 chr6A 90.152 264 18 3 3819 4075 538045819 538046081 2.140000e-88 337.0
63 TraesCS4A01G354100 chr6A 82.812 192 31 2 4142 4332 609260336 609260526 2.300000e-38 171.0
64 TraesCS4A01G354100 chr6A 100.000 28 0 0 3179 3206 603026559 603026586 9.000000e-03 52.8
65 TraesCS4A01G354100 chr7A 89.773 264 19 4 3819 4075 653720679 653720941 9.980000e-87 331.0
66 TraesCS4A01G354100 chr7A 94.737 38 2 0 3168 3205 209401778 209401815 5.200000e-05 60.2
67 TraesCS4A01G354100 chr4D 74.960 623 107 34 1846 2429 8136951 8136339 1.730000e-59 241.0
68 TraesCS4A01G354100 chr4D 93.204 103 7 0 1837 1939 8011216 8011318 8.340000e-33 152.0
69 TraesCS4A01G354100 chr4D 93.617 94 6 0 1846 1939 8150922 8150829 1.800000e-29 141.0
70 TraesCS4A01G354100 chr1B 88.333 120 14 0 2666 2785 611773048 611773167 1.390000e-30 145.0
71 TraesCS4A01G354100 chr2B 86.290 124 17 0 2660 2783 434088105 434088228 8.400000e-28 135.0
72 TraesCS4A01G354100 chr3B 95.455 44 2 0 3163 3206 130255889 130255846 2.400000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G354100 chr4A 628847441 628852249 4808 False 8881.000 8881 100.0000 1 4809 1 chr4A.!!$F1 4808
1 TraesCS4A01G354100 chr4A 595282949 595283550 601 True 272.000 272 75.8170 1846 2425 1 chr4A.!!$R1 579
2 TraesCS4A01G354100 chr5B 681616076 681623338 7262 True 786.000 2213 91.0222 1 3706 5 chr5B.!!$R5 3705
3 TraesCS4A01G354100 chr5B 681349911 681350458 547 True 784.000 784 92.6130 47 593 1 chr5B.!!$R2 546
4 TraesCS4A01G354100 chr5B 681342623 681345202 2579 True 711.025 1971 91.4165 1018 3790 4 chr5B.!!$R4 2772
5 TraesCS4A01G354100 chrUn 67355257 67359038 3781 False 568.800 1663 89.0500 28 3606 5 chrUn.!!$F5 3578
6 TraesCS4A01G354100 chr5D 539673656 539676307 2651 True 790.000 1369 87.8720 1018 3726 4 chr5D.!!$R3 2708
7 TraesCS4A01G354100 chr5D 539691047 539691614 567 True 760.000 760 90.8150 28 599 1 chr5D.!!$R2 571
8 TraesCS4A01G354100 chr3A 486325650 486326311 661 True 1079.000 1079 96.0730 4148 4809 1 chr3A.!!$R1 661
9 TraesCS4A01G354100 chr3A 666119974 666120674 700 False 546.500 815 97.1875 4147 4809 2 chr3A.!!$F4 662
10 TraesCS4A01G354100 chr5A 598528460 598529065 605 True 513.000 617 98.6315 4148 4809 2 chr5A.!!$R1 661
11 TraesCS4A01G354100 chr4B 14652838 14653483 645 True 346.000 346 77.2250 1792 2426 1 chr4B.!!$R1 634
12 TraesCS4A01G354100 chr2A 653298475 653300492 2017 True 246.000 340 90.0285 2667 4077 2 chr2A.!!$R2 1410
13 TraesCS4A01G354100 chr4D 8136339 8136951 612 True 241.000 241 74.9600 1846 2429 1 chr4D.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 913 0.107214 CCTTCACACCACCCGCATAT 60.107 55.0 0.0 0.0 0.00 1.78 F
599 4495 0.109532 TTTTGTCATGCCAGTCCGGA 59.890 50.0 0.0 0.0 36.56 5.14 F
1731 5949 0.036952 ATCCGCCCAGCATTATCGAG 60.037 55.0 0.0 0.0 0.00 4.04 F
2320 6663 0.251787 GGCAAAGGGGTCCTTGTCAT 60.252 55.0 0.0 0.0 43.92 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 5739 0.109039 GAGTTGTCGAGCTCCAGGAC 60.109 60.000 8.47 10.56 0.00 3.85 R
2277 6620 1.133181 TGGCAGTGGATCCTCACCAA 61.133 55.000 20.34 8.93 39.22 3.67 R
3629 8116 1.227380 ATGCGCCGAGATTCTCACC 60.227 57.895 13.88 2.98 0.00 4.02 R
4083 8610 0.030638 GTTTTGCGTGTGTGCCTGAT 59.969 50.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.774639 TACAACCGTCGCTCAAAGAC 58.225 50.000 0.00 0.00 35.41 3.01
20 21 0.179094 ACAACCGTCGCTCAAAGACA 60.179 50.000 0.00 0.00 38.46 3.41
21 22 0.508641 CAACCGTCGCTCAAAGACAG 59.491 55.000 0.00 0.00 38.46 3.51
22 23 0.387929 AACCGTCGCTCAAAGACAGA 59.612 50.000 0.00 0.00 38.46 3.41
23 24 0.603569 ACCGTCGCTCAAAGACAGAT 59.396 50.000 0.00 0.00 38.46 2.90
24 25 1.272781 CCGTCGCTCAAAGACAGATC 58.727 55.000 0.00 0.00 38.46 2.75
25 26 0.910513 CGTCGCTCAAAGACAGATCG 59.089 55.000 0.00 0.00 38.46 3.69
26 27 1.272781 GTCGCTCAAAGACAGATCGG 58.727 55.000 0.00 0.00 38.42 4.18
63 64 2.935955 CAACAGGAACCGTCGCAC 59.064 61.111 0.00 0.00 0.00 5.34
174 179 4.273235 CAGCGGCACATGATTAAGACAATA 59.727 41.667 0.00 0.00 0.00 1.90
176 181 5.049198 AGCGGCACATGATTAAGACAATATG 60.049 40.000 0.00 0.00 0.00 1.78
177 182 5.277974 GCGGCACATGATTAAGACAATATGT 60.278 40.000 0.00 0.00 0.00 2.29
195 203 7.336931 ACAATATGTCCTCAACATTTGTACCTC 59.663 37.037 12.62 0.00 46.73 3.85
253 261 5.527214 TGTCCAAGTGTTCACAAGATTACAG 59.473 40.000 5.74 0.00 0.00 2.74
256 264 5.707298 CCAAGTGTTCACAAGATTACAGGAT 59.293 40.000 5.74 0.00 0.00 3.24
257 265 6.207417 CCAAGTGTTCACAAGATTACAGGATT 59.793 38.462 5.74 0.00 0.00 3.01
258 266 7.301054 CAAGTGTTCACAAGATTACAGGATTC 58.699 38.462 5.74 0.00 0.00 2.52
259 267 6.773638 AGTGTTCACAAGATTACAGGATTCT 58.226 36.000 5.74 0.00 0.00 2.40
260 268 6.652481 AGTGTTCACAAGATTACAGGATTCTG 59.348 38.462 0.00 0.00 46.10 3.02
391 750 9.639601 CAGTTTACTACAGTCTGAAATGACATA 57.360 33.333 6.91 0.00 39.27 2.29
400 759 6.253727 CAGTCTGAAATGACATACTCGTAACC 59.746 42.308 0.00 0.00 39.27 2.85
427 786 3.304928 GGACAGAGCAGTTTGTTTCATGG 60.305 47.826 0.00 0.00 0.00 3.66
503 862 9.090692 CCTTTACTCAATCAATGGCTATTTTTG 57.909 33.333 8.25 8.25 0.00 2.44
537 896 0.951558 GACATTTGCAACACGGACCT 59.048 50.000 0.00 0.00 0.00 3.85
541 900 0.736053 TTTGCAACACGGACCTTCAC 59.264 50.000 0.00 0.00 0.00 3.18
554 913 0.107214 CCTTCACACCACCCGCATAT 60.107 55.000 0.00 0.00 0.00 1.78
569 3549 2.122797 ATATGTCCGGGTCGCACGA 61.123 57.895 0.00 0.00 0.00 4.35
594 4490 2.747446 GGACGTATTTTGTCATGCCAGT 59.253 45.455 0.00 0.00 38.10 4.00
599 4495 0.109532 TTTTGTCATGCCAGTCCGGA 59.890 50.000 0.00 0.00 36.56 5.14
600 4496 0.327924 TTTGTCATGCCAGTCCGGAT 59.672 50.000 7.81 0.00 36.56 4.18
605 4501 3.451556 ATGCCAGTCCGGATGCTCG 62.452 63.158 7.81 0.00 36.56 5.03
607 4503 4.147449 CCAGTCCGGATGCTCGCA 62.147 66.667 7.81 0.00 36.56 5.10
614 4510 2.435938 GGATGCTCGCAAACCGGA 60.436 61.111 9.46 0.00 37.59 5.14
615 4511 2.464459 GGATGCTCGCAAACCGGAG 61.464 63.158 9.46 0.00 37.59 4.63
616 4512 1.447838 GATGCTCGCAAACCGGAGA 60.448 57.895 9.46 0.00 37.59 3.71
620 4516 1.503818 GCTCGCAAACCGGAGACAAA 61.504 55.000 9.46 0.00 37.59 2.83
622 4518 0.179067 TCGCAAACCGGAGACAAAGT 60.179 50.000 9.46 0.00 37.59 2.66
624 4520 1.594331 GCAAACCGGAGACAAAGTCT 58.406 50.000 9.46 0.00 46.42 3.24
625 4521 1.947456 GCAAACCGGAGACAAAGTCTT 59.053 47.619 9.46 0.00 43.53 3.01
626 4522 2.357952 GCAAACCGGAGACAAAGTCTTT 59.642 45.455 9.46 0.00 43.53 2.52
628 4524 4.676986 GCAAACCGGAGACAAAGTCTTTTT 60.677 41.667 9.46 0.00 43.53 1.94
665 4561 2.514824 GGGGCATTCGGAGCACTC 60.515 66.667 0.00 0.00 35.24 3.51
667 4563 1.817099 GGGCATTCGGAGCACTCAG 60.817 63.158 0.00 0.00 31.20 3.35
668 4564 1.078848 GGCATTCGGAGCACTCAGT 60.079 57.895 0.00 0.00 0.00 3.41
669 4565 1.364626 GGCATTCGGAGCACTCAGTG 61.365 60.000 0.00 0.00 36.51 3.66
671 4567 1.078848 ATTCGGAGCACTCAGTGGC 60.079 57.895 7.00 0.00 33.64 5.01
672 4568 2.842394 ATTCGGAGCACTCAGTGGCG 62.842 60.000 7.00 0.00 33.64 5.69
674 4570 3.695606 GGAGCACTCAGTGGCGGA 61.696 66.667 7.00 0.00 33.64 5.54
675 4571 2.125753 GAGCACTCAGTGGCGGAG 60.126 66.667 7.00 0.00 38.36 4.63
690 4586 2.636768 CGGAGCCAGAAATTTTGGAC 57.363 50.000 18.07 12.34 37.96 4.02
691 4587 1.885887 CGGAGCCAGAAATTTTGGACA 59.114 47.619 18.07 0.00 37.96 4.02
692 4588 2.295909 CGGAGCCAGAAATTTTGGACAA 59.704 45.455 18.07 0.00 37.96 3.18
693 4589 3.612479 CGGAGCCAGAAATTTTGGACAAG 60.612 47.826 18.07 7.03 37.96 3.16
695 4591 4.202253 GGAGCCAGAAATTTTGGACAAGTT 60.202 41.667 18.07 2.43 37.96 2.66
696 4592 5.010617 GGAGCCAGAAATTTTGGACAAGTTA 59.989 40.000 18.07 0.00 37.96 2.24
697 4593 6.462347 GGAGCCAGAAATTTTGGACAAGTTAA 60.462 38.462 18.07 0.00 37.96 2.01
698 4594 6.515832 AGCCAGAAATTTTGGACAAGTTAAG 58.484 36.000 18.07 0.00 37.96 1.85
699 4595 5.177511 GCCAGAAATTTTGGACAAGTTAAGC 59.822 40.000 18.07 0.00 37.96 3.09
700 4596 5.696270 CCAGAAATTTTGGACAAGTTAAGCC 59.304 40.000 11.71 0.00 37.96 4.35
701 4597 6.462909 CCAGAAATTTTGGACAAGTTAAGCCT 60.463 38.462 11.71 0.00 37.96 4.58
702 4598 7.255801 CCAGAAATTTTGGACAAGTTAAGCCTA 60.256 37.037 11.71 0.00 37.96 3.93
703 4599 8.141268 CAGAAATTTTGGACAAGTTAAGCCTAA 58.859 33.333 0.00 0.00 0.00 2.69
705 4601 7.597288 AATTTTGGACAAGTTAAGCCTAAGT 57.403 32.000 0.00 0.00 0.00 2.24
707 4603 4.699925 TGGACAAGTTAAGCCTAAGTGT 57.300 40.909 0.00 0.00 0.00 3.55
708 4604 5.811796 TGGACAAGTTAAGCCTAAGTGTA 57.188 39.130 0.00 0.00 0.00 2.90
709 4605 6.368779 TGGACAAGTTAAGCCTAAGTGTAT 57.631 37.500 0.00 0.00 0.00 2.29
710 4606 7.484993 TGGACAAGTTAAGCCTAAGTGTATA 57.515 36.000 0.00 0.00 0.00 1.47
712 4608 8.545472 TGGACAAGTTAAGCCTAAGTGTATAAT 58.455 33.333 0.00 0.00 0.00 1.28
713 4609 9.043079 GGACAAGTTAAGCCTAAGTGTATAATC 57.957 37.037 0.00 0.00 0.00 1.75
714 4610 9.819267 GACAAGTTAAGCCTAAGTGTATAATCT 57.181 33.333 0.00 0.00 0.00 2.40
772 4668 8.653191 ACATATAATATACCACCAAACTTCCGA 58.347 33.333 0.00 0.00 0.00 4.55
773 4669 9.496873 CATATAATATACCACCAAACTTCCGAA 57.503 33.333 0.00 0.00 0.00 4.30
775 4671 6.937436 AATATACCACCAAACTTCCGAATC 57.063 37.500 0.00 0.00 0.00 2.52
776 4672 2.649531 ACCACCAAACTTCCGAATCA 57.350 45.000 0.00 0.00 0.00 2.57
777 4673 2.227194 ACCACCAAACTTCCGAATCAC 58.773 47.619 0.00 0.00 0.00 3.06
778 4674 2.226330 CCACCAAACTTCCGAATCACA 58.774 47.619 0.00 0.00 0.00 3.58
780 4676 3.067461 CCACCAAACTTCCGAATCACAAA 59.933 43.478 0.00 0.00 0.00 2.83
781 4677 4.261994 CCACCAAACTTCCGAATCACAAAT 60.262 41.667 0.00 0.00 0.00 2.32
782 4678 4.917415 CACCAAACTTCCGAATCACAAATC 59.083 41.667 0.00 0.00 0.00 2.17
783 4679 4.022329 ACCAAACTTCCGAATCACAAATCC 60.022 41.667 0.00 0.00 0.00 3.01
784 4680 4.022416 CCAAACTTCCGAATCACAAATCCA 60.022 41.667 0.00 0.00 0.00 3.41
785 4681 4.766404 AACTTCCGAATCACAAATCCAC 57.234 40.909 0.00 0.00 0.00 4.02
786 4682 3.750371 ACTTCCGAATCACAAATCCACA 58.250 40.909 0.00 0.00 0.00 4.17
787 4683 4.335416 ACTTCCGAATCACAAATCCACAT 58.665 39.130 0.00 0.00 0.00 3.21
788 4684 4.156556 ACTTCCGAATCACAAATCCACATG 59.843 41.667 0.00 0.00 0.00 3.21
789 4685 3.016031 TCCGAATCACAAATCCACATGG 58.984 45.455 0.00 0.00 0.00 3.66
800 4696 2.307496 TCCACATGGAGGCAAAATGT 57.693 45.000 0.00 0.00 39.78 2.71
801 4697 3.448093 TCCACATGGAGGCAAAATGTA 57.552 42.857 0.00 0.00 39.78 2.29
802 4698 3.772387 TCCACATGGAGGCAAAATGTAA 58.228 40.909 0.00 0.00 39.78 2.41
803 4699 4.352009 TCCACATGGAGGCAAAATGTAAT 58.648 39.130 0.00 0.00 39.78 1.89
804 4700 4.776837 TCCACATGGAGGCAAAATGTAATT 59.223 37.500 0.00 0.00 39.78 1.40
805 4701 5.954752 TCCACATGGAGGCAAAATGTAATTA 59.045 36.000 0.00 0.00 39.78 1.40
806 4702 6.610830 TCCACATGGAGGCAAAATGTAATTAT 59.389 34.615 0.00 0.00 39.78 1.28
808 4704 8.420222 CCACATGGAGGCAAAATGTAATTATTA 58.580 33.333 0.00 0.00 33.54 0.98
809 4705 9.814899 CACATGGAGGCAAAATGTAATTATTAA 57.185 29.630 0.00 0.00 33.67 1.40
813 4709 9.249053 TGGAGGCAAAATGTAATTATTAAGTGA 57.751 29.630 0.00 0.00 33.67 3.41
893 4789 5.791336 ATCGCTATCTGTTTCATAGACCA 57.209 39.130 0.00 0.00 0.00 4.02
894 4790 5.592104 TCGCTATCTGTTTCATAGACCAA 57.408 39.130 0.00 0.00 0.00 3.67
897 4793 6.320418 TCGCTATCTGTTTCATAGACCAAGTA 59.680 38.462 0.00 0.00 0.00 2.24
898 4794 6.978659 CGCTATCTGTTTCATAGACCAAGTAA 59.021 38.462 0.00 0.00 0.00 2.24
905 4820 8.378172 TGTTTCATAGACCAAGTAAAGTTGAG 57.622 34.615 0.00 0.00 0.00 3.02
910 4825 7.872993 TCATAGACCAAGTAAAGTTGAGACTTG 59.127 37.037 14.38 14.38 45.18 3.16
937 4852 5.582689 AAAAGATATGTAACCAGCCTTGC 57.417 39.130 0.00 0.00 0.00 4.01
938 4853 3.931907 AGATATGTAACCAGCCTTGCA 57.068 42.857 0.00 0.00 0.00 4.08
940 4855 5.567037 AGATATGTAACCAGCCTTGCATA 57.433 39.130 0.00 1.42 34.47 3.14
941 4856 5.940617 AGATATGTAACCAGCCTTGCATAA 58.059 37.500 0.00 0.00 33.91 1.90
942 4857 6.364701 AGATATGTAACCAGCCTTGCATAAA 58.635 36.000 0.00 0.00 33.91 1.40
943 4858 4.989279 ATGTAACCAGCCTTGCATAAAG 57.011 40.909 0.00 0.00 35.47 1.85
954 4869 4.558538 CTTGCATAAAGGCTAATTCGCT 57.441 40.909 1.63 0.00 31.68 4.93
955 4870 5.673337 CTTGCATAAAGGCTAATTCGCTA 57.327 39.130 1.63 0.00 31.68 4.26
956 4871 6.246420 CTTGCATAAAGGCTAATTCGCTAT 57.754 37.500 1.63 0.00 31.68 2.97
961 4876 3.971032 AAGGCTAATTCGCTATGTTGC 57.029 42.857 1.63 0.00 0.00 4.17
963 4878 1.946768 GGCTAATTCGCTATGTTGCCA 59.053 47.619 1.63 0.00 38.99 4.92
964 4879 2.357637 GGCTAATTCGCTATGTTGCCAA 59.642 45.455 1.63 0.00 38.99 4.52
972 4988 3.119291 CGCTATGTTGCCAACAAAAACA 58.881 40.909 15.17 0.00 45.86 2.83
974 4990 4.033358 CGCTATGTTGCCAACAAAAACAAA 59.967 37.500 15.17 0.00 45.86 2.83
975 4991 5.500825 GCTATGTTGCCAACAAAAACAAAG 58.499 37.500 15.17 5.10 45.86 2.77
976 4992 3.820777 TGTTGCCAACAAAAACAAAGC 57.179 38.095 8.02 0.00 38.72 3.51
980 4996 5.293079 TGTTGCCAACAAAAACAAAGCTATC 59.707 36.000 8.02 0.00 38.72 2.08
982 4998 5.669477 TGCCAACAAAAACAAAGCTATCTT 58.331 33.333 0.00 0.00 0.00 2.40
983 4999 6.810911 TGCCAACAAAAACAAAGCTATCTTA 58.189 32.000 0.00 0.00 31.02 2.10
1007 5023 9.756571 TTAAAAATAGGTAAAGCTTCCATACCA 57.243 29.630 22.15 12.02 41.26 3.25
1008 5024 7.881775 AAAATAGGTAAAGCTTCCATACCAG 57.118 36.000 22.15 0.00 41.26 4.00
1012 5028 4.475016 AGGTAAAGCTTCCATACCAGATGT 59.525 41.667 22.15 4.32 41.26 3.06
1013 5029 4.816925 GGTAAAGCTTCCATACCAGATGTC 59.183 45.833 17.39 0.00 39.12 3.06
1015 5031 3.550437 AGCTTCCATACCAGATGTCAC 57.450 47.619 0.00 0.00 0.00 3.67
1016 5032 2.171448 AGCTTCCATACCAGATGTCACC 59.829 50.000 0.00 0.00 0.00 4.02
1035 5146 4.458989 TCACCTGCAAAGGACAAATCATAC 59.541 41.667 0.00 0.00 0.00 2.39
1097 5209 5.036916 AGGGGTATCTCTTGTTCCACATAA 58.963 41.667 0.00 0.00 0.00 1.90
1128 5329 6.877322 GCTTCTTGTTTCCCATAGTACAGTAA 59.123 38.462 0.00 0.00 0.00 2.24
1176 5384 2.990479 CCCTTGCCGGAGCTTAGT 59.010 61.111 5.05 0.00 40.80 2.24
1522 5739 1.442184 CACGTCTTCCCGTCGTCAG 60.442 63.158 0.00 0.00 39.45 3.51
1527 5744 1.213013 CTTCCCGTCGTCAGTCCTG 59.787 63.158 0.00 0.00 0.00 3.86
1593 5810 1.154016 CTACCGACACAGAGCCACG 60.154 63.158 0.00 0.00 0.00 4.94
1665 5882 1.069765 CTGGTCGTCCAACTGCAGT 59.930 57.895 15.25 15.25 43.81 4.40
1672 5889 1.235724 GTCCAACTGCAGTACCAACC 58.764 55.000 22.01 2.58 0.00 3.77
1703 5921 1.122019 AGCTGGAACTTCACCTCGGT 61.122 55.000 0.00 0.00 0.00 4.69
1729 5947 1.915614 GCATCCGCCCAGCATTATCG 61.916 60.000 0.00 0.00 0.00 2.92
1730 5948 0.320683 CATCCGCCCAGCATTATCGA 60.321 55.000 0.00 0.00 0.00 3.59
1731 5949 0.036952 ATCCGCCCAGCATTATCGAG 60.037 55.000 0.00 0.00 0.00 4.04
1950 6168 5.449107 TCAAGAAGGTCTGTACAGTACAC 57.551 43.478 21.99 13.01 34.46 2.90
2320 6663 0.251787 GGCAAAGGGGTCCTTGTCAT 60.252 55.000 0.00 0.00 43.92 3.06
2440 6783 6.421485 AGGCAAGTTCATCACTTCAATCTAT 58.579 36.000 0.00 0.00 44.60 1.98
2489 6843 7.736447 ACTCCTCAGTATCAAAACAAAAGAG 57.264 36.000 0.00 0.00 0.00 2.85
2501 6855 6.147000 TCAAAACAAAAGAGGTTTTTGCAGTC 59.853 34.615 11.16 0.00 43.76 3.51
2510 6864 5.474876 AGAGGTTTTTGCAGTCCAAATCTAG 59.525 40.000 0.00 0.00 42.63 2.43
2612 6970 9.554395 TTTTGTGATATCAAGAAAGACAGTACA 57.446 29.630 7.07 0.00 0.00 2.90
2615 6973 8.531146 TGTGATATCAAGAAAGACAGTACATCA 58.469 33.333 7.07 0.00 0.00 3.07
2616 6974 8.812329 GTGATATCAAGAAAGACAGTACATCAC 58.188 37.037 7.07 0.00 33.11 3.06
2618 6976 8.939201 ATATCAAGAAAGACAGTACATCACAG 57.061 34.615 0.00 0.00 0.00 3.66
2619 6977 4.991056 TCAAGAAAGACAGTACATCACAGC 59.009 41.667 0.00 0.00 0.00 4.40
2620 6978 4.607293 AGAAAGACAGTACATCACAGCA 57.393 40.909 0.00 0.00 0.00 4.41
2675 7033 6.715347 ATTGTGCAAATTAATACTCCCTCC 57.285 37.500 0.00 0.00 0.00 4.30
2676 7034 5.186256 TGTGCAAATTAATACTCCCTCCA 57.814 39.130 0.00 0.00 0.00 3.86
2677 7035 5.765510 TGTGCAAATTAATACTCCCTCCAT 58.234 37.500 0.00 0.00 0.00 3.41
2678 7036 5.827797 TGTGCAAATTAATACTCCCTCCATC 59.172 40.000 0.00 0.00 0.00 3.51
2679 7037 5.241728 GTGCAAATTAATACTCCCTCCATCC 59.758 44.000 0.00 0.00 0.00 3.51
2680 7038 4.455877 GCAAATTAATACTCCCTCCATCCG 59.544 45.833 0.00 0.00 0.00 4.18
2681 7039 4.910458 AATTAATACTCCCTCCATCCGG 57.090 45.455 0.00 0.00 0.00 5.14
2682 7040 3.623466 TTAATACTCCCTCCATCCGGA 57.377 47.619 6.61 6.61 39.79 5.14
2683 7041 2.489528 AATACTCCCTCCATCCGGAA 57.510 50.000 9.01 0.00 42.21 4.30
2684 7042 2.489528 ATACTCCCTCCATCCGGAAA 57.510 50.000 9.01 0.00 42.21 3.13
2685 7043 2.489528 TACTCCCTCCATCCGGAAAT 57.510 50.000 9.01 0.00 42.21 2.17
2686 7044 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
2687 7045 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
2688 7046 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
2689 7047 2.706190 CTCCCTCCATCCGGAAATACTT 59.294 50.000 9.01 0.00 42.21 2.24
2690 7048 3.901844 CTCCCTCCATCCGGAAATACTTA 59.098 47.826 9.01 0.00 42.21 2.24
2691 7049 4.499472 TCCCTCCATCCGGAAATACTTAT 58.501 43.478 9.01 0.00 42.21 1.73
2692 7050 4.911522 TCCCTCCATCCGGAAATACTTATT 59.088 41.667 9.01 0.00 42.21 1.40
2693 7051 5.003804 CCCTCCATCCGGAAATACTTATTG 58.996 45.833 9.01 0.00 42.21 1.90
2694 7052 4.455877 CCTCCATCCGGAAATACTTATTGC 59.544 45.833 9.01 0.00 42.21 3.56
2695 7053 5.042463 TCCATCCGGAAATACTTATTGCA 57.958 39.130 9.01 0.00 38.83 4.08
2696 7054 5.063204 TCCATCCGGAAATACTTATTGCAG 58.937 41.667 9.01 0.00 38.83 4.41
2697 7055 5.063204 CCATCCGGAAATACTTATTGCAGA 58.937 41.667 9.01 0.00 0.00 4.26
2698 7056 5.530915 CCATCCGGAAATACTTATTGCAGAA 59.469 40.000 9.01 0.00 0.00 3.02
2699 7057 6.039270 CCATCCGGAAATACTTATTGCAGAAA 59.961 38.462 9.01 0.00 0.00 2.52
2700 7058 7.255590 CCATCCGGAAATACTTATTGCAGAAAT 60.256 37.037 9.01 0.00 0.00 2.17
2701 7059 7.026631 TCCGGAAATACTTATTGCAGAAATG 57.973 36.000 0.00 0.00 0.00 2.32
2702 7060 6.039270 TCCGGAAATACTTATTGCAGAAATGG 59.961 38.462 0.00 0.00 0.00 3.16
2703 7061 6.208644 CGGAAATACTTATTGCAGAAATGGG 58.791 40.000 0.00 0.00 0.00 4.00
2704 7062 6.183360 CGGAAATACTTATTGCAGAAATGGGT 60.183 38.462 0.00 0.00 0.00 4.51
2705 7063 7.203218 GGAAATACTTATTGCAGAAATGGGTC 58.797 38.462 0.00 0.00 0.00 4.46
2706 7064 7.147915 GGAAATACTTATTGCAGAAATGGGTCA 60.148 37.037 0.00 0.00 0.00 4.02
2707 7065 7.716799 AATACTTATTGCAGAAATGGGTCAA 57.283 32.000 0.00 0.00 0.00 3.18
2708 7066 7.716799 ATACTTATTGCAGAAATGGGTCAAA 57.283 32.000 0.00 0.00 0.00 2.69
2709 7067 6.418057 ACTTATTGCAGAAATGGGTCAAAA 57.582 33.333 0.00 0.00 0.00 2.44
2710 7068 7.008021 ACTTATTGCAGAAATGGGTCAAAAT 57.992 32.000 0.00 0.00 0.00 1.82
2711 7069 6.875195 ACTTATTGCAGAAATGGGTCAAAATG 59.125 34.615 0.00 0.00 0.00 2.32
2712 7070 3.681593 TGCAGAAATGGGTCAAAATGG 57.318 42.857 0.00 0.00 0.00 3.16
2713 7071 3.237746 TGCAGAAATGGGTCAAAATGGA 58.762 40.909 0.00 0.00 0.00 3.41
2714 7072 3.839490 TGCAGAAATGGGTCAAAATGGAT 59.161 39.130 0.00 0.00 0.00 3.41
2715 7073 4.186159 GCAGAAATGGGTCAAAATGGATG 58.814 43.478 0.00 0.00 0.00 3.51
2716 7074 4.322953 GCAGAAATGGGTCAAAATGGATGT 60.323 41.667 0.00 0.00 0.00 3.06
2717 7075 5.105392 GCAGAAATGGGTCAAAATGGATGTA 60.105 40.000 0.00 0.00 0.00 2.29
2718 7076 6.407299 GCAGAAATGGGTCAAAATGGATGTAT 60.407 38.462 0.00 0.00 0.00 2.29
2719 7077 7.201902 GCAGAAATGGGTCAAAATGGATGTATA 60.202 37.037 0.00 0.00 0.00 1.47
2720 7078 8.863086 CAGAAATGGGTCAAAATGGATGTATAT 58.137 33.333 0.00 0.00 0.00 0.86
2726 7084 9.707957 TGGGTCAAAATGGATGTATATAAAACT 57.292 29.630 0.00 0.00 0.00 2.66
2777 7135 8.985922 TCTCATATATGTATTTCTGGATGGAGG 58.014 37.037 12.42 0.00 0.00 4.30
2778 7136 8.094284 TCATATATGTATTTCTGGATGGAGGG 57.906 38.462 12.42 0.00 0.00 4.30
2779 7137 7.906192 TCATATATGTATTTCTGGATGGAGGGA 59.094 37.037 12.42 0.00 0.00 4.20
2780 7138 4.989875 ATGTATTTCTGGATGGAGGGAG 57.010 45.455 0.00 0.00 0.00 4.30
2781 7139 3.736094 TGTATTTCTGGATGGAGGGAGT 58.264 45.455 0.00 0.00 0.00 3.85
2782 7140 4.890988 TGTATTTCTGGATGGAGGGAGTA 58.109 43.478 0.00 0.00 0.00 2.59
2783 7141 5.476983 TGTATTTCTGGATGGAGGGAGTAT 58.523 41.667 0.00 0.00 0.00 2.12
2784 7142 6.630131 TGTATTTCTGGATGGAGGGAGTATA 58.370 40.000 0.00 0.00 0.00 1.47
2785 7143 6.497259 TGTATTTCTGGATGGAGGGAGTATAC 59.503 42.308 0.00 0.00 0.00 1.47
2786 7144 4.552883 TTCTGGATGGAGGGAGTATACA 57.447 45.455 5.50 0.00 0.00 2.29
2787 7145 4.767000 TCTGGATGGAGGGAGTATACAT 57.233 45.455 5.50 0.00 0.00 2.29
2790 7148 4.826616 TGGATGGAGGGAGTATACATGAA 58.173 43.478 5.50 0.00 0.00 2.57
2800 7158 9.886132 GAGGGAGTATACATGAACTAAAAGAAA 57.114 33.333 5.50 0.00 0.00 2.52
2899 7273 2.278875 CACTCACATACACGCACATACG 59.721 50.000 0.00 0.00 39.50 3.06
2900 7274 1.852280 CTCACATACACGCACATACGG 59.148 52.381 0.00 0.00 37.37 4.02
2909 7283 3.181479 ACACGCACATACGGTCATTCTAT 60.181 43.478 0.00 0.00 37.37 1.98
2949 7324 4.081322 AGGAAAATGTGAGTACCAACGT 57.919 40.909 0.00 0.00 0.00 3.99
2963 7338 4.175787 ACCAACGTCAAGTCTATGACTC 57.824 45.455 0.42 0.00 45.98 3.36
2964 7339 3.056749 ACCAACGTCAAGTCTATGACTCC 60.057 47.826 0.42 0.00 45.98 3.85
2965 7340 3.512680 CAACGTCAAGTCTATGACTCCC 58.487 50.000 0.42 0.00 45.98 4.30
3001 7384 7.013942 GGTTCCACCACAAGAAAACTAACTATT 59.986 37.037 0.00 0.00 38.42 1.73
3010 7393 9.000486 ACAAGAAAACTAACTATTTGAGCTACC 58.000 33.333 0.00 0.00 0.00 3.18
3194 7595 8.250332 ACTCTCTCTGTCTCAAAATGTAAGATC 58.750 37.037 0.00 0.00 0.00 2.75
3225 7692 8.777865 TGACACCAGAAGAAAATACTTATGAG 57.222 34.615 0.00 0.00 40.23 2.90
3245 7712 7.865706 ATGAGTAAATTTGATCACTGGTACC 57.134 36.000 4.43 4.43 0.00 3.34
3254 7721 5.042463 TGATCACTGGTACCAAGTTTGAA 57.958 39.130 17.11 0.14 0.00 2.69
3629 8116 7.798516 GTGCATTGTGAGTTATAATAATGACCG 59.201 37.037 0.00 0.00 0.00 4.79
3644 8131 2.278857 CCGGTGAGAATCTCGGCG 60.279 66.667 0.00 0.00 42.98 6.46
3707 8195 1.886542 ACGTGTCACTACAGCATCAGA 59.113 47.619 0.65 0.00 35.91 3.27
3726 8214 4.568359 TCAGAGCGTTGATTCTTTAGCATC 59.432 41.667 0.00 0.00 0.00 3.91
3727 8215 4.330894 CAGAGCGTTGATTCTTTAGCATCA 59.669 41.667 0.00 0.00 0.00 3.07
3728 8216 4.569966 AGAGCGTTGATTCTTTAGCATCAG 59.430 41.667 0.00 0.00 30.00 2.90
3796 8316 4.981806 TTTTACTCTGCATATGGTTGGC 57.018 40.909 4.56 0.00 0.00 4.52
3797 8317 3.643199 TTACTCTGCATATGGTTGGCA 57.357 42.857 4.56 0.00 35.96 4.92
3801 8321 3.189568 TGCATATGGTTGGCAGGAC 57.810 52.632 4.56 0.00 32.95 3.85
3802 8322 0.330941 TGCATATGGTTGGCAGGACA 59.669 50.000 4.56 0.00 32.95 4.02
3803 8323 1.027357 GCATATGGTTGGCAGGACAG 58.973 55.000 4.56 0.00 0.00 3.51
3804 8324 1.683943 CATATGGTTGGCAGGACAGG 58.316 55.000 0.00 0.00 0.00 4.00
3805 8325 0.106519 ATATGGTTGGCAGGACAGGC 60.107 55.000 0.00 0.00 0.00 4.85
3806 8326 2.535485 TATGGTTGGCAGGACAGGCG 62.535 60.000 0.00 0.00 36.77 5.52
3808 8328 4.329545 GTTGGCAGGACAGGCGGA 62.330 66.667 0.00 0.00 36.77 5.54
3809 8329 4.020617 TTGGCAGGACAGGCGGAG 62.021 66.667 0.00 0.00 36.77 4.63
3841 8361 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
3959 8479 9.265938 CAATATGAAACTTTAAGTCATGACACG 57.734 33.333 27.02 12.29 34.01 4.49
3960 8480 5.666969 TGAAACTTTAAGTCATGACACGG 57.333 39.130 27.02 13.94 0.00 4.94
3978 8505 7.100409 TGACACGGTATTGATTTCAGATTGTA 58.900 34.615 0.00 0.00 0.00 2.41
3987 8514 7.887996 TTGATTTCAGATTGTAAATGTTGGC 57.112 32.000 0.00 0.00 0.00 4.52
4024 8551 4.094830 AGTTGGTCCAATTTTACGAGGT 57.905 40.909 7.77 0.00 0.00 3.85
4034 8561 6.488683 TCCAATTTTACGAGGTTTGACTTCAT 59.511 34.615 0.00 0.00 0.00 2.57
4036 8563 7.326063 CCAATTTTACGAGGTTTGACTTCATTC 59.674 37.037 0.00 0.00 0.00 2.67
4066 8593 2.529780 TGCGAACTAAAAAGGACCGA 57.470 45.000 0.00 0.00 0.00 4.69
4087 8614 4.998672 CGAAGGGAGTACTAGGAGTATCAG 59.001 50.000 0.00 0.00 36.25 2.90
4088 8615 5.318630 GAAGGGAGTACTAGGAGTATCAGG 58.681 50.000 0.00 0.00 36.25 3.86
4089 8616 3.074836 AGGGAGTACTAGGAGTATCAGGC 59.925 52.174 0.00 0.00 36.25 4.85
4091 8618 3.822167 GGAGTACTAGGAGTATCAGGCAC 59.178 52.174 0.00 0.00 36.25 5.01
4092 8619 4.462133 GAGTACTAGGAGTATCAGGCACA 58.538 47.826 0.00 0.00 36.25 4.57
4094 8621 3.101643 ACTAGGAGTATCAGGCACACA 57.898 47.619 0.00 0.00 36.25 3.72
4095 8622 2.761208 ACTAGGAGTATCAGGCACACAC 59.239 50.000 0.00 0.00 36.25 3.82
4096 8623 0.532573 AGGAGTATCAGGCACACACG 59.467 55.000 0.00 0.00 36.25 4.49
4097 8624 1.084370 GGAGTATCAGGCACACACGC 61.084 60.000 0.00 0.00 36.25 5.34
4099 8626 0.034756 AGTATCAGGCACACACGCAA 59.965 50.000 0.00 0.00 0.00 4.85
4100 8627 0.871722 GTATCAGGCACACACGCAAA 59.128 50.000 0.00 0.00 0.00 3.68
4102 8629 0.030638 ATCAGGCACACACGCAAAAC 59.969 50.000 0.00 0.00 0.00 2.43
4112 8639 4.194312 CGCAAAACGCTGACACTG 57.806 55.556 0.00 0.00 39.08 3.66
4113 8640 2.005537 CGCAAAACGCTGACACTGC 61.006 57.895 0.00 0.00 39.08 4.40
4114 8641 1.063972 GCAAAACGCTGACACTGCA 59.936 52.632 0.00 0.00 37.77 4.41
4115 8642 1.202348 GCAAAACGCTGACACTGCAC 61.202 55.000 0.00 0.00 37.77 4.57
4116 8643 0.592247 CAAAACGCTGACACTGCACC 60.592 55.000 0.00 0.00 0.00 5.01
4117 8644 2.047151 AAAACGCTGACACTGCACCG 62.047 55.000 0.00 0.00 0.00 4.94
4118 8645 4.969196 ACGCTGACACTGCACCGG 62.969 66.667 0.00 0.00 0.00 5.28
4119 8646 4.969196 CGCTGACACTGCACCGGT 62.969 66.667 0.00 0.00 0.00 5.28
4120 8647 3.349006 GCTGACACTGCACCGGTG 61.349 66.667 30.66 30.66 45.33 4.94
4130 8657 2.809601 CACCGGTGCACGCTACTC 60.810 66.667 24.02 0.00 42.52 2.59
4131 8658 3.299977 ACCGGTGCACGCTACTCA 61.300 61.111 6.12 0.00 42.52 3.41
4132 8659 2.809601 CCGGTGCACGCTACTCAC 60.810 66.667 11.45 0.00 42.52 3.51
4133 8660 3.172575 CGGTGCACGCTACTCACG 61.173 66.667 11.45 1.84 34.82 4.35
4134 8661 2.257371 GGTGCACGCTACTCACGA 59.743 61.111 11.45 0.00 0.00 4.35
4135 8662 1.372499 GGTGCACGCTACTCACGAA 60.372 57.895 11.45 0.00 0.00 3.85
4136 8663 1.615107 GGTGCACGCTACTCACGAAC 61.615 60.000 11.45 0.00 0.00 3.95
4137 8664 0.937699 GTGCACGCTACTCACGAACA 60.938 55.000 0.00 0.00 0.00 3.18
4138 8665 0.249114 TGCACGCTACTCACGAACAA 60.249 50.000 0.00 0.00 0.00 2.83
4139 8666 1.068474 GCACGCTACTCACGAACAAT 58.932 50.000 0.00 0.00 0.00 2.71
4140 8667 2.256174 GCACGCTACTCACGAACAATA 58.744 47.619 0.00 0.00 0.00 1.90
4141 8668 2.858344 GCACGCTACTCACGAACAATAT 59.142 45.455 0.00 0.00 0.00 1.28
4142 8669 3.306166 GCACGCTACTCACGAACAATATT 59.694 43.478 0.00 0.00 0.00 1.28
4143 8670 4.201685 GCACGCTACTCACGAACAATATTT 60.202 41.667 0.00 0.00 0.00 1.40
4144 8671 5.248087 CACGCTACTCACGAACAATATTTG 58.752 41.667 0.00 0.00 0.00 2.32
4405 9130 2.333389 ACGCTCGAAGTTCTACACAG 57.667 50.000 0.56 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.639298 GCACTAGGCAAGGAACTGCG 61.639 60.000 0.00 0.00 40.86 5.18
103 104 0.449388 ACGCACGTACTACTGGCTAC 59.551 55.000 0.00 0.00 0.00 3.58
176 181 4.003648 CAGGAGGTACAAATGTTGAGGAC 58.996 47.826 0.00 0.00 0.00 3.85
177 182 3.650942 ACAGGAGGTACAAATGTTGAGGA 59.349 43.478 0.00 0.00 0.00 3.71
178 183 4.003648 GACAGGAGGTACAAATGTTGAGG 58.996 47.826 0.00 0.00 0.00 3.86
180 185 4.141597 TGTGACAGGAGGTACAAATGTTGA 60.142 41.667 0.00 0.00 0.00 3.18
181 186 4.024048 GTGTGACAGGAGGTACAAATGTTG 60.024 45.833 0.00 0.00 0.00 3.33
182 187 4.134563 GTGTGACAGGAGGTACAAATGTT 58.865 43.478 0.00 0.00 0.00 2.71
184 189 3.738982 TGTGTGACAGGAGGTACAAATG 58.261 45.455 0.00 0.00 0.00 2.32
185 190 4.640771 ATGTGTGACAGGAGGTACAAAT 57.359 40.909 0.00 0.00 0.00 2.32
186 191 5.554437 TTATGTGTGACAGGAGGTACAAA 57.446 39.130 0.00 0.00 0.00 2.83
195 203 5.452078 ACCAATGTTTTATGTGTGACAGG 57.548 39.130 0.00 0.00 0.00 4.00
262 270 6.137794 TCTTGTATCTCGCCAAAACAAAAA 57.862 33.333 0.00 0.00 30.30 1.94
264 272 5.759506 TTCTTGTATCTCGCCAAAACAAA 57.240 34.783 0.00 0.00 30.30 2.83
267 275 5.607119 TCTTTCTTGTATCTCGCCAAAAC 57.393 39.130 0.00 0.00 0.00 2.43
295 305 6.212791 AGACCTTACTACTAATGTTTGCCAGA 59.787 38.462 0.00 0.00 0.00 3.86
391 750 3.802675 GCTCTGTCCTTTTGGTTACGAGT 60.803 47.826 0.00 0.00 41.38 4.18
400 759 4.376340 AACAAACTGCTCTGTCCTTTTG 57.624 40.909 0.00 0.00 0.00 2.44
427 786 6.549736 AGGTATTGGTTGGTTTATTATGGAGC 59.450 38.462 0.00 0.00 0.00 4.70
523 882 0.393132 TGTGAAGGTCCGTGTTGCAA 60.393 50.000 0.00 0.00 0.00 4.08
537 896 0.326595 ACATATGCGGGTGGTGTGAA 59.673 50.000 1.58 0.00 0.00 3.18
541 900 1.887242 CGGACATATGCGGGTGGTG 60.887 63.158 1.58 0.00 35.75 4.17
569 3549 2.612212 GCATGACAAAATACGTCCGGAT 59.388 45.455 7.81 0.00 32.15 4.18
574 3554 3.181510 GGACTGGCATGACAAAATACGTC 60.182 47.826 1.11 5.18 0.00 4.34
594 4490 2.435938 GGTTTGCGAGCATCCGGA 60.436 61.111 6.61 6.61 0.00 5.14
599 4495 1.741770 GTCTCCGGTTTGCGAGCAT 60.742 57.895 0.00 0.00 0.00 3.79
600 4496 2.357034 GTCTCCGGTTTGCGAGCA 60.357 61.111 0.00 0.00 0.00 4.26
605 4501 1.594331 AGACTTTGTCTCCGGTTTGC 58.406 50.000 0.00 0.00 38.71 3.68
647 4543 4.115199 AGTGCTCCGAATGCCCCC 62.115 66.667 0.00 0.00 0.00 5.40
648 4544 2.514824 GAGTGCTCCGAATGCCCC 60.515 66.667 0.00 0.00 0.00 5.80
649 4545 1.817099 CTGAGTGCTCCGAATGCCC 60.817 63.158 0.00 0.00 0.00 5.36
650 4546 1.078848 ACTGAGTGCTCCGAATGCC 60.079 57.895 0.00 0.00 0.00 4.40
652 4548 1.364626 GCCACTGAGTGCTCCGAATG 61.365 60.000 7.16 0.00 31.34 2.67
653 4549 1.078848 GCCACTGAGTGCTCCGAAT 60.079 57.895 7.16 0.00 31.34 3.34
654 4550 2.343758 GCCACTGAGTGCTCCGAA 59.656 61.111 7.16 0.00 31.34 4.30
655 4551 4.056125 CGCCACTGAGTGCTCCGA 62.056 66.667 7.16 0.00 31.34 4.55
657 4553 3.655810 CTCCGCCACTGAGTGCTCC 62.656 68.421 7.16 0.00 31.34 4.70
658 4554 2.125753 CTCCGCCACTGAGTGCTC 60.126 66.667 7.16 0.00 31.34 4.26
659 4555 4.385405 GCTCCGCCACTGAGTGCT 62.385 66.667 7.16 0.00 31.34 4.40
671 4567 1.885887 TGTCCAAAATTTCTGGCTCCG 59.114 47.619 12.09 0.00 33.63 4.63
672 4568 3.321968 ACTTGTCCAAAATTTCTGGCTCC 59.678 43.478 12.09 5.95 33.63 4.70
673 4569 4.590850 ACTTGTCCAAAATTTCTGGCTC 57.409 40.909 12.09 9.28 33.63 4.70
674 4570 6.478512 TTAACTTGTCCAAAATTTCTGGCT 57.521 33.333 12.09 0.00 33.63 4.75
675 4571 5.177511 GCTTAACTTGTCCAAAATTTCTGGC 59.822 40.000 12.09 9.16 33.63 4.85
676 4572 5.696270 GGCTTAACTTGTCCAAAATTTCTGG 59.304 40.000 11.15 11.15 35.05 3.86
677 4573 6.515832 AGGCTTAACTTGTCCAAAATTTCTG 58.484 36.000 0.00 0.00 0.00 3.02
678 4574 6.731292 AGGCTTAACTTGTCCAAAATTTCT 57.269 33.333 0.00 0.00 0.00 2.52
679 4575 8.141909 ACTTAGGCTTAACTTGTCCAAAATTTC 58.858 33.333 0.00 0.00 0.00 2.17
683 4579 5.889289 ACACTTAGGCTTAACTTGTCCAAAA 59.111 36.000 0.00 0.00 0.00 2.44
684 4580 5.442391 ACACTTAGGCTTAACTTGTCCAAA 58.558 37.500 0.00 0.00 0.00 3.28
685 4581 5.043737 ACACTTAGGCTTAACTTGTCCAA 57.956 39.130 0.00 0.00 0.00 3.53
686 4582 4.699925 ACACTTAGGCTTAACTTGTCCA 57.300 40.909 0.00 0.00 0.00 4.02
687 4583 8.959705 ATTATACACTTAGGCTTAACTTGTCC 57.040 34.615 0.00 0.00 0.00 4.02
688 4584 9.819267 AGATTATACACTTAGGCTTAACTTGTC 57.181 33.333 0.00 0.00 0.00 3.18
745 4641 9.280174 CGGAAGTTTGGTGGTATATTATATGTT 57.720 33.333 0.00 0.00 0.00 2.71
746 4642 8.653191 TCGGAAGTTTGGTGGTATATTATATGT 58.347 33.333 0.00 0.00 0.00 2.29
747 4643 9.496873 TTCGGAAGTTTGGTGGTATATTATATG 57.503 33.333 0.00 0.00 0.00 1.78
750 4646 8.215050 TGATTCGGAAGTTTGGTGGTATATTAT 58.785 33.333 0.00 0.00 0.00 1.28
751 4647 7.496591 GTGATTCGGAAGTTTGGTGGTATATTA 59.503 37.037 0.00 0.00 0.00 0.98
752 4648 6.317893 GTGATTCGGAAGTTTGGTGGTATATT 59.682 38.462 0.00 0.00 0.00 1.28
753 4649 5.820947 GTGATTCGGAAGTTTGGTGGTATAT 59.179 40.000 0.00 0.00 0.00 0.86
754 4650 5.180271 GTGATTCGGAAGTTTGGTGGTATA 58.820 41.667 0.00 0.00 0.00 1.47
755 4651 4.007659 GTGATTCGGAAGTTTGGTGGTAT 58.992 43.478 0.00 0.00 0.00 2.73
756 4652 3.181453 TGTGATTCGGAAGTTTGGTGGTA 60.181 43.478 0.00 0.00 0.00 3.25
757 4653 2.227194 GTGATTCGGAAGTTTGGTGGT 58.773 47.619 0.00 0.00 0.00 4.16
758 4654 2.226330 TGTGATTCGGAAGTTTGGTGG 58.774 47.619 0.00 0.00 0.00 4.61
759 4655 3.980646 TTGTGATTCGGAAGTTTGGTG 57.019 42.857 0.00 0.00 0.00 4.17
760 4656 4.022329 GGATTTGTGATTCGGAAGTTTGGT 60.022 41.667 0.00 0.00 0.00 3.67
762 4658 4.917415 GTGGATTTGTGATTCGGAAGTTTG 59.083 41.667 0.00 0.00 0.00 2.93
765 4661 3.750371 TGTGGATTTGTGATTCGGAAGT 58.250 40.909 0.00 0.00 0.00 3.01
766 4662 4.439153 CCATGTGGATTTGTGATTCGGAAG 60.439 45.833 0.00 0.00 37.39 3.46
768 4664 3.016031 CCATGTGGATTTGTGATTCGGA 58.984 45.455 0.00 0.00 37.39 4.55
769 4665 3.016031 TCCATGTGGATTTGTGATTCGG 58.984 45.455 0.00 0.00 39.78 4.30
772 4668 2.762327 GCCTCCATGTGGATTTGTGATT 59.238 45.455 1.54 0.00 44.46 2.57
773 4669 2.291735 TGCCTCCATGTGGATTTGTGAT 60.292 45.455 1.54 0.00 44.46 3.06
774 4670 1.075212 TGCCTCCATGTGGATTTGTGA 59.925 47.619 1.54 0.00 44.46 3.58
775 4671 1.548081 TGCCTCCATGTGGATTTGTG 58.452 50.000 1.54 0.00 44.46 3.33
776 4672 2.307496 TTGCCTCCATGTGGATTTGT 57.693 45.000 1.54 0.00 44.46 2.83
777 4673 3.681593 TTTTGCCTCCATGTGGATTTG 57.318 42.857 1.54 0.00 44.46 2.32
778 4674 3.583966 ACATTTTGCCTCCATGTGGATTT 59.416 39.130 1.54 0.00 44.46 2.17
780 4676 2.823959 ACATTTTGCCTCCATGTGGAT 58.176 42.857 1.54 0.00 44.46 3.41
781 4677 2.307496 ACATTTTGCCTCCATGTGGA 57.693 45.000 1.17 1.17 43.08 4.02
782 4678 4.741321 ATTACATTTTGCCTCCATGTGG 57.259 40.909 0.00 0.00 33.19 4.17
783 4679 9.814899 TTAATAATTACATTTTGCCTCCATGTG 57.185 29.630 0.00 0.00 33.19 3.21
787 4683 9.249053 TCACTTAATAATTACATTTTGCCTCCA 57.751 29.630 0.00 0.00 0.00 3.86
867 4763 9.190317 TGGTCTATGAAACAGATAGCGATATAT 57.810 33.333 0.00 0.00 0.00 0.86
868 4764 8.575649 TGGTCTATGAAACAGATAGCGATATA 57.424 34.615 0.00 0.00 0.00 0.86
869 4765 7.468141 TGGTCTATGAAACAGATAGCGATAT 57.532 36.000 0.00 0.00 0.00 1.63
870 4766 6.894339 TGGTCTATGAAACAGATAGCGATA 57.106 37.500 0.00 0.00 0.00 2.92
871 4767 5.791336 TGGTCTATGAAACAGATAGCGAT 57.209 39.130 0.00 0.00 0.00 4.58
872 4768 5.127194 ACTTGGTCTATGAAACAGATAGCGA 59.873 40.000 0.00 0.00 0.00 4.93
873 4769 5.352284 ACTTGGTCTATGAAACAGATAGCG 58.648 41.667 0.00 0.00 0.00 4.26
874 4770 8.718102 TTTACTTGGTCTATGAAACAGATAGC 57.282 34.615 0.00 0.00 0.00 2.97
875 4771 9.877178 ACTTTACTTGGTCTATGAAACAGATAG 57.123 33.333 0.00 0.00 0.00 2.08
877 4773 9.003658 CAACTTTACTTGGTCTATGAAACAGAT 57.996 33.333 0.00 0.00 0.00 2.90
878 4774 8.208224 TCAACTTTACTTGGTCTATGAAACAGA 58.792 33.333 0.00 0.00 0.00 3.41
879 4775 8.378172 TCAACTTTACTTGGTCTATGAAACAG 57.622 34.615 0.00 0.00 0.00 3.16
880 4776 8.208224 TCTCAACTTTACTTGGTCTATGAAACA 58.792 33.333 0.00 0.00 0.00 2.83
883 4779 7.963532 AGTCTCAACTTTACTTGGTCTATGAA 58.036 34.615 0.00 0.00 28.74 2.57
884 4780 7.540474 AGTCTCAACTTTACTTGGTCTATGA 57.460 36.000 0.00 0.00 28.74 2.15
885 4781 7.872993 TCAAGTCTCAACTTTACTTGGTCTATG 59.127 37.037 12.89 0.00 46.44 2.23
886 4782 7.873505 GTCAAGTCTCAACTTTACTTGGTCTAT 59.126 37.037 12.89 0.00 46.44 1.98
887 4783 7.147794 TGTCAAGTCTCAACTTTACTTGGTCTA 60.148 37.037 12.89 0.00 46.44 2.59
888 4784 6.049790 GTCAAGTCTCAACTTTACTTGGTCT 58.950 40.000 12.89 0.00 46.44 3.85
889 4785 5.815740 TGTCAAGTCTCAACTTTACTTGGTC 59.184 40.000 12.89 8.33 46.44 4.02
890 4786 5.741011 TGTCAAGTCTCAACTTTACTTGGT 58.259 37.500 12.89 0.00 46.44 3.67
891 4787 6.677781 TTGTCAAGTCTCAACTTTACTTGG 57.322 37.500 12.89 0.00 46.44 3.61
892 4788 8.964420 TTTTTGTCAAGTCTCAACTTTACTTG 57.036 30.769 7.88 7.88 43.28 3.16
914 4829 5.480073 TGCAAGGCTGGTTACATATCTTTTT 59.520 36.000 0.00 0.00 0.00 1.94
915 4830 5.016173 TGCAAGGCTGGTTACATATCTTTT 58.984 37.500 0.00 0.00 0.00 2.27
917 4832 4.235079 TGCAAGGCTGGTTACATATCTT 57.765 40.909 0.00 0.00 0.00 2.40
919 4834 6.294176 CCTTTATGCAAGGCTGGTTACATATC 60.294 42.308 0.00 0.00 46.18 1.63
922 4837 3.701040 CCTTTATGCAAGGCTGGTTACAT 59.299 43.478 0.00 0.00 46.18 2.29
936 4851 5.613358 ACATAGCGAATTAGCCTTTATGC 57.387 39.130 14.21 0.00 38.01 3.14
937 4852 5.853282 GCAACATAGCGAATTAGCCTTTATG 59.147 40.000 6.95 10.86 38.01 1.90
938 4853 5.048713 GGCAACATAGCGAATTAGCCTTTAT 60.049 40.000 6.95 0.00 37.89 1.40
940 4855 3.066760 GGCAACATAGCGAATTAGCCTTT 59.933 43.478 6.95 0.00 37.89 3.11
941 4856 2.618709 GGCAACATAGCGAATTAGCCTT 59.381 45.455 6.95 0.00 37.89 4.35
942 4857 2.222027 GGCAACATAGCGAATTAGCCT 58.778 47.619 6.95 0.00 37.89 4.58
943 4858 1.946768 TGGCAACATAGCGAATTAGCC 59.053 47.619 6.95 0.00 46.17 3.93
982 4998 9.403583 CTGGTATGGAAGCTTTACCTATTTTTA 57.596 33.333 21.09 4.32 37.00 1.52
983 4999 8.113462 TCTGGTATGGAAGCTTTACCTATTTTT 58.887 33.333 21.09 0.00 37.00 1.94
989 5005 4.475016 ACATCTGGTATGGAAGCTTTACCT 59.525 41.667 21.09 6.33 37.00 3.08
990 5006 4.781934 ACATCTGGTATGGAAGCTTTACC 58.218 43.478 16.00 16.00 36.68 2.85
991 5007 5.294552 GTGACATCTGGTATGGAAGCTTTAC 59.705 44.000 0.00 0.00 0.00 2.01
992 5008 5.428253 GTGACATCTGGTATGGAAGCTTTA 58.572 41.667 0.00 0.00 0.00 1.85
994 5010 3.370953 GGTGACATCTGGTATGGAAGCTT 60.371 47.826 0.00 0.00 0.00 3.74
995 5011 2.171448 GGTGACATCTGGTATGGAAGCT 59.829 50.000 0.00 0.00 0.00 3.74
996 5012 2.171448 AGGTGACATCTGGTATGGAAGC 59.829 50.000 0.00 0.00 0.00 3.86
997 5013 3.801698 CAGGTGACATCTGGTATGGAAG 58.198 50.000 7.92 0.00 0.00 3.46
998 5014 2.092968 GCAGGTGACATCTGGTATGGAA 60.093 50.000 17.37 0.00 33.16 3.53
1000 5016 1.210234 TGCAGGTGACATCTGGTATGG 59.790 52.381 17.37 0.00 33.16 2.74
1001 5017 2.696989 TGCAGGTGACATCTGGTATG 57.303 50.000 17.37 0.00 33.16 2.39
1003 5019 2.290260 CCTTTGCAGGTGACATCTGGTA 60.290 50.000 17.37 0.00 35.06 3.25
1005 5021 1.171308 CCTTTGCAGGTGACATCTGG 58.829 55.000 17.37 0.51 35.06 3.86
1006 5022 1.808945 GTCCTTTGCAGGTGACATCTG 59.191 52.381 11.60 11.60 41.69 2.90
1007 5023 1.421268 TGTCCTTTGCAGGTGACATCT 59.579 47.619 9.40 0.00 41.69 2.90
1008 5024 1.896220 TGTCCTTTGCAGGTGACATC 58.104 50.000 9.40 0.00 41.69 3.06
1012 5028 2.942804 TGATTTGTCCTTTGCAGGTGA 58.057 42.857 0.00 0.00 41.69 4.02
1013 5029 3.947910 ATGATTTGTCCTTTGCAGGTG 57.052 42.857 0.00 0.00 41.69 4.00
1015 5031 4.460382 AGTGTATGATTTGTCCTTTGCAGG 59.540 41.667 0.00 0.00 42.50 4.85
1016 5032 5.181811 TCAGTGTATGATTTGTCCTTTGCAG 59.818 40.000 0.00 0.00 31.12 4.41
1035 5146 3.470709 TCAGCAAGACCTCTTTTCAGTG 58.529 45.455 0.00 0.00 33.11 3.66
1097 5209 6.012745 ACTATGGGAAACAAGAAGCATCTTT 58.987 36.000 0.43 0.00 43.43 2.52
1128 5329 0.404426 GGGTTGGGGTTCTTGCTAGT 59.596 55.000 0.00 0.00 0.00 2.57
1196 5404 4.791411 GCTTTTACTTGTTTGATGCGTGGA 60.791 41.667 0.00 0.00 0.00 4.02
1205 5413 5.299279 TCCCTCTCAAGCTTTTACTTGTTTG 59.701 40.000 0.00 0.00 45.86 2.93
1384 5595 5.221263 GCTACTTCTACCTGATCGAATCCAA 60.221 44.000 0.00 0.00 0.00 3.53
1386 5597 4.321378 GGCTACTTCTACCTGATCGAATCC 60.321 50.000 0.00 0.00 0.00 3.01
1498 5709 3.677648 CGGGAAGACGTGTCCGGT 61.678 66.667 0.00 0.00 38.93 5.28
1522 5739 0.109039 GAGTTGTCGAGCTCCAGGAC 60.109 60.000 8.47 10.56 0.00 3.85
1576 5793 2.632544 CCGTGGCTCTGTGTCGGTA 61.633 63.158 0.00 0.00 36.99 4.02
1585 5802 3.699894 CCAGCTGTCCGTGGCTCT 61.700 66.667 13.81 0.00 36.59 4.09
1703 5921 3.157949 TGGGCGGATGCGGTATGA 61.158 61.111 9.20 0.00 44.10 2.15
1713 5931 1.367471 CTCGATAATGCTGGGCGGA 59.633 57.895 0.00 0.00 0.00 5.54
1788 6006 4.838486 CTCGACTGCGGCGACCTC 62.838 72.222 12.98 0.00 38.28 3.85
1944 6162 9.950680 CAAAATTATTTGTGTGAGAAGTGTACT 57.049 29.630 0.00 0.00 40.84 2.73
2135 6439 1.517257 CGGCCTCTTCACTAGCACG 60.517 63.158 0.00 0.00 0.00 5.34
2277 6620 1.133181 TGGCAGTGGATCCTCACCAA 61.133 55.000 20.34 8.93 39.22 3.67
2320 6663 4.717629 CGACCTCGGCGAGCAACA 62.718 66.667 30.55 0.00 35.37 3.33
2482 6836 4.122143 TGGACTGCAAAAACCTCTTTTG 57.878 40.909 5.74 5.74 41.09 2.44
2489 6843 5.453567 ACTAGATTTGGACTGCAAAAACC 57.546 39.130 0.00 0.00 0.00 3.27
2520 6874 4.632153 ACTCTGTAGCAAAATGAAGACGT 58.368 39.130 0.00 0.00 0.00 4.34
2534 6888 4.857588 CGGCAACAAGTACTAACTCTGTAG 59.142 45.833 0.00 0.00 33.75 2.74
2611 6969 5.539979 AGTTATCTGCTATCTGCTGTGATG 58.460 41.667 0.00 0.00 43.37 3.07
2612 6970 5.804944 AGTTATCTGCTATCTGCTGTGAT 57.195 39.130 0.00 0.00 43.37 3.06
2615 6973 5.114780 CACAAGTTATCTGCTATCTGCTGT 58.885 41.667 0.00 0.00 43.37 4.40
2616 6974 4.510711 CCACAAGTTATCTGCTATCTGCTG 59.489 45.833 0.00 0.00 43.37 4.41
2618 6976 3.249559 GCCACAAGTTATCTGCTATCTGC 59.750 47.826 0.00 0.00 43.25 4.26
2619 6977 3.812053 GGCCACAAGTTATCTGCTATCTG 59.188 47.826 0.00 0.00 0.00 2.90
2620 6978 3.181450 GGGCCACAAGTTATCTGCTATCT 60.181 47.826 4.39 0.00 0.00 1.98
2673 7031 5.042463 TGCAATAAGTATTTCCGGATGGA 57.958 39.130 4.15 0.00 44.61 3.41
2674 7032 5.063204 TCTGCAATAAGTATTTCCGGATGG 58.937 41.667 4.15 0.00 0.00 3.51
2675 7033 6.618287 TTCTGCAATAAGTATTTCCGGATG 57.382 37.500 4.15 0.00 0.00 3.51
2676 7034 7.255590 CCATTTCTGCAATAAGTATTTCCGGAT 60.256 37.037 4.15 0.00 0.00 4.18
2677 7035 6.039270 CCATTTCTGCAATAAGTATTTCCGGA 59.961 38.462 0.00 0.00 0.00 5.14
2678 7036 6.208644 CCATTTCTGCAATAAGTATTTCCGG 58.791 40.000 0.00 0.00 0.00 5.14
2679 7037 6.183360 ACCCATTTCTGCAATAAGTATTTCCG 60.183 38.462 0.00 0.00 0.00 4.30
2680 7038 7.112452 ACCCATTTCTGCAATAAGTATTTCC 57.888 36.000 0.00 0.00 0.00 3.13
2681 7039 7.771183 TGACCCATTTCTGCAATAAGTATTTC 58.229 34.615 0.00 0.00 0.00 2.17
2682 7040 7.716799 TGACCCATTTCTGCAATAAGTATTT 57.283 32.000 0.00 0.00 0.00 1.40
2683 7041 7.716799 TTGACCCATTTCTGCAATAAGTATT 57.283 32.000 0.00 0.00 0.00 1.89
2684 7042 7.716799 TTTGACCCATTTCTGCAATAAGTAT 57.283 32.000 0.00 0.00 0.00 2.12
2685 7043 7.531857 TTTTGACCCATTTCTGCAATAAGTA 57.468 32.000 0.00 0.00 0.00 2.24
2686 7044 6.418057 TTTTGACCCATTTCTGCAATAAGT 57.582 33.333 0.00 0.00 0.00 2.24
2687 7045 6.314400 CCATTTTGACCCATTTCTGCAATAAG 59.686 38.462 0.00 0.00 0.00 1.73
2688 7046 6.013898 TCCATTTTGACCCATTTCTGCAATAA 60.014 34.615 0.00 0.00 0.00 1.40
2689 7047 5.483231 TCCATTTTGACCCATTTCTGCAATA 59.517 36.000 0.00 0.00 0.00 1.90
2690 7048 4.286549 TCCATTTTGACCCATTTCTGCAAT 59.713 37.500 0.00 0.00 0.00 3.56
2691 7049 3.645212 TCCATTTTGACCCATTTCTGCAA 59.355 39.130 0.00 0.00 0.00 4.08
2692 7050 3.237746 TCCATTTTGACCCATTTCTGCA 58.762 40.909 0.00 0.00 0.00 4.41
2693 7051 3.959535 TCCATTTTGACCCATTTCTGC 57.040 42.857 0.00 0.00 0.00 4.26
2694 7052 5.410355 ACATCCATTTTGACCCATTTCTG 57.590 39.130 0.00 0.00 0.00 3.02
2700 7058 9.707957 AGTTTTATATACATCCATTTTGACCCA 57.292 29.630 0.00 0.00 0.00 4.51
2751 7109 8.985922 CCTCCATCCAGAAATACATATATGAGA 58.014 37.037 19.63 7.09 0.00 3.27
2752 7110 8.209584 CCCTCCATCCAGAAATACATATATGAG 58.790 40.741 19.63 1.07 0.00 2.90
2753 7111 7.906192 TCCCTCCATCCAGAAATACATATATGA 59.094 37.037 19.63 3.73 0.00 2.15
2754 7112 8.094284 TCCCTCCATCCAGAAATACATATATG 57.906 38.462 11.29 11.29 0.00 1.78
2755 7113 7.908917 ACTCCCTCCATCCAGAAATACATATAT 59.091 37.037 0.00 0.00 0.00 0.86
2756 7114 7.256399 ACTCCCTCCATCCAGAAATACATATA 58.744 38.462 0.00 0.00 0.00 0.86
2757 7115 6.094302 ACTCCCTCCATCCAGAAATACATAT 58.906 40.000 0.00 0.00 0.00 1.78
2758 7116 5.476983 ACTCCCTCCATCCAGAAATACATA 58.523 41.667 0.00 0.00 0.00 2.29
2759 7117 4.310740 ACTCCCTCCATCCAGAAATACAT 58.689 43.478 0.00 0.00 0.00 2.29
2760 7118 3.736094 ACTCCCTCCATCCAGAAATACA 58.264 45.455 0.00 0.00 0.00 2.29
2761 7119 6.497259 TGTATACTCCCTCCATCCAGAAATAC 59.503 42.308 4.17 0.00 0.00 1.89
2762 7120 6.630131 TGTATACTCCCTCCATCCAGAAATA 58.370 40.000 4.17 0.00 0.00 1.40
2763 7121 5.476983 TGTATACTCCCTCCATCCAGAAAT 58.523 41.667 4.17 0.00 0.00 2.17
2764 7122 4.890988 TGTATACTCCCTCCATCCAGAAA 58.109 43.478 4.17 0.00 0.00 2.52
2765 7123 4.552883 TGTATACTCCCTCCATCCAGAA 57.447 45.455 4.17 0.00 0.00 3.02
2766 7124 4.107961 TCATGTATACTCCCTCCATCCAGA 59.892 45.833 4.17 0.00 0.00 3.86
2767 7125 4.420206 TCATGTATACTCCCTCCATCCAG 58.580 47.826 4.17 0.00 0.00 3.86
2768 7126 4.485653 TCATGTATACTCCCTCCATCCA 57.514 45.455 4.17 0.00 0.00 3.41
2769 7127 4.841246 AGTTCATGTATACTCCCTCCATCC 59.159 45.833 4.17 0.00 0.00 3.51
2770 7128 7.540474 TTAGTTCATGTATACTCCCTCCATC 57.460 40.000 4.17 0.00 0.00 3.51
2771 7129 7.931015 TTTAGTTCATGTATACTCCCTCCAT 57.069 36.000 4.17 0.00 0.00 3.41
2772 7130 7.622081 TCTTTTAGTTCATGTATACTCCCTCCA 59.378 37.037 4.17 0.00 0.00 3.86
2773 7131 8.019656 TCTTTTAGTTCATGTATACTCCCTCC 57.980 38.462 4.17 0.00 0.00 4.30
2774 7132 9.886132 TTTCTTTTAGTTCATGTATACTCCCTC 57.114 33.333 4.17 0.00 0.00 4.30
2807 7165 5.833340 ACTCAAGTAAGGTAGTCCTCTCAT 58.167 41.667 0.00 0.00 44.35 2.90
2809 7167 5.254901 TGACTCAAGTAAGGTAGTCCTCTC 58.745 45.833 0.00 0.00 44.35 3.20
2832 7206 6.880942 AAAACATTTGTGGCAATTTGCTAT 57.119 29.167 20.06 0.00 44.28 2.97
2866 7240 1.295792 TGTGAGTGTCTTCGTTTGCC 58.704 50.000 0.00 0.00 0.00 4.52
2871 7245 2.921069 GCGTGTATGTGAGTGTCTTCGT 60.921 50.000 0.00 0.00 0.00 3.85
2873 7247 2.408704 GTGCGTGTATGTGAGTGTCTTC 59.591 50.000 0.00 0.00 0.00 2.87
2922 7296 8.723311 CGTTGGTACTCACATTTTCCTAATTAA 58.277 33.333 0.00 0.00 0.00 1.40
2923 7297 7.879160 ACGTTGGTACTCACATTTTCCTAATTA 59.121 33.333 0.00 0.00 0.00 1.40
2924 7298 6.713450 ACGTTGGTACTCACATTTTCCTAATT 59.287 34.615 0.00 0.00 0.00 1.40
2925 7299 6.235664 ACGTTGGTACTCACATTTTCCTAAT 58.764 36.000 0.00 0.00 0.00 1.73
2949 7324 3.099905 CACCAGGGAGTCATAGACTTGA 58.900 50.000 0.70 0.00 43.53 3.02
2964 7339 3.579302 TGGAACCAGCCCACCAGG 61.579 66.667 0.00 0.00 39.47 4.45
2965 7340 2.282462 GTGGAACCAGCCCACCAG 60.282 66.667 0.00 0.00 46.30 4.00
3001 7384 1.277842 TGCGAATTGAGGGTAGCTCAA 59.722 47.619 0.00 0.00 43.74 3.02
3015 7398 3.042871 ACATTTGTGGCAATTGCGAAT 57.957 38.095 23.48 16.56 43.26 3.34
3194 7595 9.533253 AAGTATTTTCTTCTGGTGTCAAAAATG 57.467 29.630 0.00 0.00 31.10 2.32
3201 7602 8.779354 ACTCATAAGTATTTTCTTCTGGTGTC 57.221 34.615 0.00 0.00 32.59 3.67
3225 7692 7.448748 ACTTGGTACCAGTGATCAAATTTAC 57.551 36.000 15.65 0.00 0.00 2.01
3245 7712 6.618287 TCTAGGTTGTGTGATTCAAACTTG 57.382 37.500 8.41 0.97 39.41 3.16
3342 7809 8.800370 AAATATTTGTTTGGTTTTCACCTGTT 57.200 26.923 0.00 0.00 44.61 3.16
3343 7810 9.320352 GTAAATATTTGTTTGGTTTTCACCTGT 57.680 29.630 11.05 0.00 44.61 4.00
3344 7811 9.319143 TGTAAATATTTGTTTGGTTTTCACCTG 57.681 29.630 11.05 0.00 44.61 4.00
3541 8019 2.040544 GCCTGCTTGCCGCTTCTTA 61.041 57.895 0.00 0.00 40.11 2.10
3566 8044 6.624917 CACTAATTGAACATGCTAATTCGACG 59.375 38.462 0.00 0.00 0.00 5.12
3629 8116 1.227380 ATGCGCCGAGATTCTCACC 60.227 57.895 13.88 2.98 0.00 4.02
3643 8130 5.229887 GGTAACATGCTAAATTGAACATGCG 59.770 40.000 6.15 0.00 42.88 4.73
3644 8131 5.229887 CGGTAACATGCTAAATTGAACATGC 59.770 40.000 6.15 0.00 42.88 4.06
3680 8168 4.004982 TGCTGTAGTGACACGTACAGATA 58.995 43.478 29.56 20.99 46.17 1.98
3707 8195 3.624861 CCTGATGCTAAAGAATCAACGCT 59.375 43.478 2.31 0.00 39.49 5.07
3726 8214 9.515226 AAATATTCTAGTACTCTCTCTAGCCTG 57.485 37.037 0.00 0.00 35.13 4.85
3791 8311 4.329545 TCCGCCTGTCCTGCCAAC 62.330 66.667 0.00 0.00 0.00 3.77
3792 8312 4.020617 CTCCGCCTGTCCTGCCAA 62.021 66.667 0.00 0.00 0.00 4.52
3795 8315 4.828925 GAGCTCCGCCTGTCCTGC 62.829 72.222 0.87 0.00 0.00 4.85
3796 8316 4.504916 CGAGCTCCGCCTGTCCTG 62.505 72.222 8.47 0.00 0.00 3.86
3797 8317 2.626255 TATCGAGCTCCGCCTGTCCT 62.626 60.000 8.47 0.00 38.37 3.85
3798 8318 2.194212 TATCGAGCTCCGCCTGTCC 61.194 63.158 8.47 0.00 38.37 4.02
3799 8319 1.008309 GTATCGAGCTCCGCCTGTC 60.008 63.158 8.47 0.00 38.37 3.51
3800 8320 1.729470 CTGTATCGAGCTCCGCCTGT 61.729 60.000 8.47 0.00 38.37 4.00
3801 8321 1.007964 CTGTATCGAGCTCCGCCTG 60.008 63.158 8.47 0.00 38.37 4.85
3802 8322 0.179026 TACTGTATCGAGCTCCGCCT 60.179 55.000 8.47 0.00 38.37 5.52
3803 8323 0.040246 GTACTGTATCGAGCTCCGCC 60.040 60.000 8.47 0.00 38.37 6.13
3804 8324 0.945813 AGTACTGTATCGAGCTCCGC 59.054 55.000 8.47 0.00 38.37 5.54
3805 8325 1.532007 GGAGTACTGTATCGAGCTCCG 59.468 57.143 8.47 3.57 34.09 4.63
3806 8326 1.881324 GGGAGTACTGTATCGAGCTCC 59.119 57.143 8.47 11.16 41.12 4.70
3807 8327 2.809696 GAGGGAGTACTGTATCGAGCTC 59.190 54.545 0.00 2.73 0.00 4.09
3808 8328 2.487625 GGAGGGAGTACTGTATCGAGCT 60.488 54.545 0.00 0.00 0.00 4.09
3809 8329 1.881324 GGAGGGAGTACTGTATCGAGC 59.119 57.143 0.00 0.00 0.00 5.03
3810 8330 2.144730 CGGAGGGAGTACTGTATCGAG 58.855 57.143 0.00 0.00 0.00 4.04
3811 8331 2.251409 CGGAGGGAGTACTGTATCGA 57.749 55.000 0.00 0.00 0.00 3.59
3996 8523 6.766944 TCGTAAAATTGGACCAACTTTGTAGA 59.233 34.615 21.01 14.50 0.00 2.59
4000 8527 5.219633 CCTCGTAAAATTGGACCAACTTTG 58.780 41.667 21.01 7.80 0.00 2.77
4011 8538 7.860373 TGAATGAAGTCAAACCTCGTAAAATTG 59.140 33.333 0.00 0.00 0.00 2.32
4014 8541 6.928979 TGAATGAAGTCAAACCTCGTAAAA 57.071 33.333 0.00 0.00 0.00 1.52
4066 8593 4.448054 GCCTGATACTCCTAGTACTCCCTT 60.448 50.000 0.00 0.00 32.84 3.95
4077 8604 0.532573 CGTGTGTGCCTGATACTCCT 59.467 55.000 0.00 0.00 0.00 3.69
4078 8605 1.084370 GCGTGTGTGCCTGATACTCC 61.084 60.000 0.00 0.00 0.00 3.85
4079 8606 0.389817 TGCGTGTGTGCCTGATACTC 60.390 55.000 0.00 0.00 0.00 2.59
4081 8608 0.871722 TTTGCGTGTGTGCCTGATAC 59.128 50.000 0.00 0.00 0.00 2.24
4083 8610 0.030638 GTTTTGCGTGTGTGCCTGAT 59.969 50.000 0.00 0.00 0.00 2.90
4084 8611 1.431440 GTTTTGCGTGTGTGCCTGA 59.569 52.632 0.00 0.00 0.00 3.86
4085 8612 1.938814 CGTTTTGCGTGTGTGCCTG 60.939 57.895 0.00 0.00 35.54 4.85
4087 8614 3.319316 GCGTTTTGCGTGTGTGCC 61.319 61.111 0.00 0.00 43.66 5.01
4096 8623 1.063972 TGCAGTGTCAGCGTTTTGC 59.936 52.632 0.00 0.00 46.98 3.68
4097 8624 0.592247 GGTGCAGTGTCAGCGTTTTG 60.592 55.000 0.00 0.00 33.85 2.44
4099 8626 3.420943 GGTGCAGTGTCAGCGTTT 58.579 55.556 0.00 0.00 33.85 3.60
4115 8642 2.809601 GTGAGTAGCGTGCACCGG 60.810 66.667 12.15 0.00 36.94 5.28
4116 8643 3.172575 CGTGAGTAGCGTGCACCG 61.173 66.667 12.15 7.80 40.40 4.94
4117 8644 1.372499 TTCGTGAGTAGCGTGCACC 60.372 57.895 12.15 4.10 0.00 5.01
4118 8645 0.937699 TGTTCGTGAGTAGCGTGCAC 60.938 55.000 6.82 6.82 0.00 4.57
4119 8646 0.249114 TTGTTCGTGAGTAGCGTGCA 60.249 50.000 0.00 0.00 0.00 4.57
4120 8647 1.068474 ATTGTTCGTGAGTAGCGTGC 58.932 50.000 0.00 0.00 0.00 5.34
4121 8648 5.163992 ACAAATATTGTTCGTGAGTAGCGTG 60.164 40.000 0.00 0.00 42.22 5.34
4122 8649 4.927425 ACAAATATTGTTCGTGAGTAGCGT 59.073 37.500 0.00 0.00 42.22 5.07
4123 8650 5.248087 CACAAATATTGTTCGTGAGTAGCG 58.752 41.667 0.00 0.00 43.23 4.26
4124 8651 5.350365 TCCACAAATATTGTTCGTGAGTAGC 59.650 40.000 8.40 0.00 43.23 3.58
4125 8652 6.590292 ACTCCACAAATATTGTTCGTGAGTAG 59.410 38.462 10.33 6.28 43.23 2.57
4126 8653 6.367695 CACTCCACAAATATTGTTCGTGAGTA 59.632 38.462 11.11 0.00 43.23 2.59
4127 8654 5.179368 CACTCCACAAATATTGTTCGTGAGT 59.821 40.000 8.40 8.47 43.23 3.41
4128 8655 5.408299 TCACTCCACAAATATTGTTCGTGAG 59.592 40.000 11.65 9.34 43.23 3.51
4129 8656 5.301555 TCACTCCACAAATATTGTTCGTGA 58.698 37.500 11.65 11.65 43.23 4.35
4130 8657 5.605564 TCACTCCACAAATATTGTTCGTG 57.394 39.130 0.00 2.42 43.23 4.35
4131 8658 5.763204 ACTTCACTCCACAAATATTGTTCGT 59.237 36.000 0.00 0.00 43.23 3.85
4132 8659 6.147821 AGACTTCACTCCACAAATATTGTTCG 59.852 38.462 0.00 0.00 43.23 3.95
4133 8660 7.440523 AGACTTCACTCCACAAATATTGTTC 57.559 36.000 0.00 0.00 43.23 3.18
4134 8661 9.520515 AATAGACTTCACTCCACAAATATTGTT 57.479 29.630 0.00 0.00 43.23 2.83
4135 8662 9.520515 AAATAGACTTCACTCCACAAATATTGT 57.479 29.630 0.00 0.00 46.75 2.71
4141 8668 8.626526 GGTTTAAAATAGACTTCACTCCACAAA 58.373 33.333 0.00 0.00 0.00 2.83
4142 8669 7.229907 GGGTTTAAAATAGACTTCACTCCACAA 59.770 37.037 0.00 0.00 0.00 3.33
4143 8670 6.713450 GGGTTTAAAATAGACTTCACTCCACA 59.287 38.462 0.00 0.00 0.00 4.17
4144 8671 6.940867 AGGGTTTAAAATAGACTTCACTCCAC 59.059 38.462 0.00 0.00 0.00 4.02
4145 8672 6.940298 CAGGGTTTAAAATAGACTTCACTCCA 59.060 38.462 0.00 0.00 0.00 3.86
4405 9130 7.220030 TGGAAATAATCAAGATAGCTCCAGAC 58.780 38.462 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.