Multiple sequence alignment - TraesCS4A01G351500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G351500 chr4A 100.000 2815 0 0 1 2815 627353921 627351107 0.000000e+00 5199.0
1 TraesCS4A01G351500 chr4A 88.787 437 22 11 2366 2775 618416704 618417140 6.960000e-141 510.0
2 TraesCS4A01G351500 chr4A 92.949 156 10 1 2029 2184 618416565 618416719 2.820000e-55 226.0
3 TraesCS4A01G351500 chr4A 93.651 126 8 0 2653 2778 618416687 618416562 3.700000e-44 189.0
4 TraesCS4A01G351500 chr4A 93.496 123 8 0 2029 2151 627351147 627351269 1.720000e-42 183.0
5 TraesCS4A01G351500 chr5D 90.301 1361 96 20 686 2028 541957501 541958843 0.000000e+00 1749.0
6 TraesCS4A01G351500 chr5B 90.413 1137 70 13 693 1820 684009410 684010516 0.000000e+00 1459.0
7 TraesCS4A01G351500 chr5B 90.426 188 18 0 2176 2363 405520081 405519894 6.020000e-62 248.0
8 TraesCS4A01G351500 chr5B 90.374 187 18 0 2176 2362 34430548 34430734 2.170000e-61 246.0
9 TraesCS4A01G351500 chr5B 94.737 95 3 2 1 95 684008468 684008560 2.260000e-31 147.0
10 TraesCS4A01G351500 chr5B 85.507 69 8 2 258 325 532910862 532910929 1.400000e-08 71.3
11 TraesCS4A01G351500 chr2A 92.308 247 14 3 2533 2776 679569828 679570072 2.080000e-91 346.0
12 TraesCS4A01G351500 chr2A 97.297 37 0 1 258 294 576356796 576356761 8.420000e-06 62.1
13 TraesCS4A01G351500 chr7D 85.135 296 30 4 2366 2650 162025617 162025909 9.860000e-75 291.0
14 TraesCS4A01G351500 chr7D 92.727 165 11 1 2016 2180 162025465 162025628 1.300000e-58 237.0
15 TraesCS4A01G351500 chr7D 87.766 188 23 0 2176 2363 68440799 68440986 1.310000e-53 220.0
16 TraesCS4A01G351500 chr7D 95.868 121 5 0 2655 2775 162025598 162025478 2.210000e-46 196.0
17 TraesCS4A01G351500 chr7D 94.444 126 6 1 2655 2780 162028370 162028494 2.860000e-45 193.0
18 TraesCS4A01G351500 chr6B 91.282 195 17 0 2173 2367 100707833 100708027 1.660000e-67 267.0
19 TraesCS4A01G351500 chr6B 91.282 195 16 1 2173 2367 100743086 100743279 5.980000e-67 265.0
20 TraesCS4A01G351500 chr7B 91.489 188 16 0 2176 2363 680159120 680159307 2.780000e-65 259.0
21 TraesCS4A01G351500 chr7B 89.894 188 19 0 2176 2363 39614815 39615002 2.800000e-60 243.0
22 TraesCS4A01G351500 chr7B 100.000 28 0 0 2366 2393 664037316 664037343 5.000000e-03 52.8
23 TraesCS4A01G351500 chr4B 91.257 183 16 0 2181 2363 37528969 37528787 1.670000e-62 250.0
24 TraesCS4A01G351500 chr6D 90.426 188 18 0 2176 2363 87284375 87284188 6.020000e-62 248.0
25 TraesCS4A01G351500 chr7A 93.590 156 9 1 2029 2184 448261846 448261692 6.060000e-57 231.0
26 TraesCS4A01G351500 chr7A 92.029 138 10 1 2644 2781 448261715 448261851 2.860000e-45 193.0
27 TraesCS4A01G351500 chr5A 93.590 156 9 1 2029 2184 564983289 564983135 6.060000e-57 231.0
28 TraesCS4A01G351500 chr5A 92.308 156 11 1 2029 2184 47570104 47569950 1.310000e-53 220.0
29 TraesCS4A01G351500 chr5A 92.763 152 10 1 2029 2180 564981656 564981806 4.720000e-53 219.0
30 TraesCS4A01G351500 chr5A 93.571 140 9 0 2029 2168 47567401 47567540 2.840000e-50 209.0
31 TraesCS4A01G351500 chr5A 95.161 124 6 0 2653 2776 47567523 47567400 2.210000e-46 196.0
32 TraesCS4A01G351500 chr5A 91.667 132 11 0 2644 2775 564983158 564983289 1.720000e-42 183.0
33 TraesCS4A01G351500 chr5A 96.875 32 1 0 2366 2397 47569965 47569934 1.000000e-03 54.7
34 TraesCS4A01G351500 chr6A 86.574 216 20 6 2366 2573 554385074 554384860 2.180000e-56 230.0
35 TraesCS4A01G351500 chr6A 92.105 152 11 1 2029 2180 554382704 554382854 2.200000e-51 213.0
36 TraesCS4A01G351500 chr6A 94.309 123 7 0 2653 2775 554382826 554382704 3.700000e-44 189.0
37 TraesCS4A01G351500 chrUn 81.197 117 12 5 1106 1222 9954183 9954077 5.000000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G351500 chr4A 627351107 627353921 2814 True 5199.000000 5199 100.000000 1 2815 1 chr4A.!!$R2 2814
1 TraesCS4A01G351500 chr4A 618416565 618417140 575 False 368.000000 510 90.868000 2029 2775 2 chr4A.!!$F2 746
2 TraesCS4A01G351500 chr5D 541957501 541958843 1342 False 1749.000000 1749 90.301000 686 2028 1 chr5D.!!$F1 1342
3 TraesCS4A01G351500 chr5B 684008468 684010516 2048 False 803.000000 1459 92.575000 1 1820 2 chr5B.!!$F3 1819
4 TraesCS4A01G351500 chr7D 162025465 162028494 3029 False 240.333333 291 90.768667 2016 2780 3 chr7D.!!$F2 764
5 TraesCS4A01G351500 chr5A 564981656 564983289 1633 False 201.000000 219 92.215000 2029 2775 2 chr5A.!!$F2 746
6 TraesCS4A01G351500 chr6A 554382704 554385074 2370 True 209.500000 230 90.441500 2366 2775 2 chr6A.!!$R1 409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 385 0.038526 AGACGTCGTGGCCTTACTTG 60.039 55.0 10.46 0.0 0.0 3.16 F
101 388 0.108992 CGTCGTGGCCTTACTTGCTA 60.109 55.0 3.32 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 1399 0.392998 ACGCCATTGGTTGCCTCTAG 60.393 55.0 4.26 0.0 0.0 2.43 R
1955 2276 0.671251 GGGTGGCTAGATCTCAGTCG 59.329 60.0 0.00 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.203408 TGCGTGGCACCAATTGGA 60.203 55.556 31.22 5.38 38.94 3.53
77 78 5.588648 CACCAATTGGAAAGGATATACGTGT 59.411 40.000 31.22 0.00 38.94 4.49
79 80 5.820423 CCAATTGGAAAGGATATACGTGTGA 59.180 40.000 20.50 0.00 37.39 3.58
80 81 6.017934 CCAATTGGAAAGGATATACGTGTGAG 60.018 42.308 20.50 0.00 37.39 3.51
81 82 5.925506 TTGGAAAGGATATACGTGTGAGA 57.074 39.130 0.00 0.00 0.00 3.27
82 83 5.258456 TGGAAAGGATATACGTGTGAGAC 57.742 43.478 0.00 0.00 0.00 3.36
90 91 3.097728 CGTGTGAGACGTCGTGGC 61.098 66.667 10.46 2.84 43.50 5.01
95 382 0.731855 GTGAGACGTCGTGGCCTTAC 60.732 60.000 10.46 0.00 0.00 2.34
98 385 0.038526 AGACGTCGTGGCCTTACTTG 60.039 55.000 10.46 0.00 0.00 3.16
101 388 0.108992 CGTCGTGGCCTTACTTGCTA 60.109 55.000 3.32 0.00 0.00 3.49
113 400 5.800438 GCCTTACTTGCTACTAATTTTGTGC 59.200 40.000 0.00 0.00 0.00 4.57
126 413 6.821665 ACTAATTTTGTGCTGTATACATCGGT 59.178 34.615 5.91 0.00 0.00 4.69
144 431 5.988310 TCGGTGGATTATCCGTATTGTAT 57.012 39.130 6.77 0.00 45.88 2.29
145 432 6.349243 TCGGTGGATTATCCGTATTGTATT 57.651 37.500 6.77 0.00 45.88 1.89
148 435 6.310467 CGGTGGATTATCCGTATTGTATTGAG 59.690 42.308 6.77 0.00 40.17 3.02
172 459 2.293677 TATGCATCACCACTGTCGAC 57.706 50.000 9.11 9.11 0.00 4.20
196 483 5.353938 GGTACATGTCGGCTCTATTTTGTA 58.646 41.667 0.00 0.00 0.00 2.41
217 504 9.555727 TTTGTAGCAATAACAAGAGTTAGTTCT 57.444 29.630 0.00 0.00 43.02 3.01
233 520 4.457834 AGTTCTGATTTGGACTACCTCG 57.542 45.455 0.00 0.00 37.04 4.63
242 529 0.739561 GGACTACCTCGAAGCGACAT 59.260 55.000 0.00 0.00 0.00 3.06
258 547 4.216257 AGCGACATTTTGCACTGTATTCTT 59.784 37.500 0.00 0.00 34.03 2.52
282 571 5.964958 TTTTGAGGAAAGACCATCATGAC 57.035 39.130 0.00 0.00 42.04 3.06
285 574 5.604758 TGAGGAAAGACCATCATGACTAG 57.395 43.478 0.00 0.00 42.04 2.57
294 583 8.894768 AAGACCATCATGACTAGCTTTATTAC 57.105 34.615 0.00 0.00 0.00 1.89
295 584 8.023021 AGACCATCATGACTAGCTTTATTACA 57.977 34.615 0.00 0.00 0.00 2.41
296 585 8.486210 AGACCATCATGACTAGCTTTATTACAA 58.514 33.333 0.00 0.00 0.00 2.41
298 587 9.632638 ACCATCATGACTAGCTTTATTACAATT 57.367 29.630 0.00 0.00 0.00 2.32
325 616 1.654105 CGTTCACATTGTCTACGAGCC 59.346 52.381 12.49 0.00 34.36 4.70
326 617 1.654105 GTTCACATTGTCTACGAGCCG 59.346 52.381 0.00 0.00 0.00 5.52
329 628 0.736325 ACATTGTCTACGAGCCGCAC 60.736 55.000 0.00 0.00 0.00 5.34
336 635 1.923227 CTACGAGCCGCACAGTCAGA 61.923 60.000 0.00 0.00 0.00 3.27
343 642 1.005748 CGCACAGTCAGAAGGCTCA 60.006 57.895 0.00 0.00 0.00 4.26
344 643 1.287730 CGCACAGTCAGAAGGCTCAC 61.288 60.000 0.00 0.00 0.00 3.51
345 644 0.952984 GCACAGTCAGAAGGCTCACC 60.953 60.000 0.00 0.00 0.00 4.02
367 666 5.133153 ACCCAACCAACTAAAAGAGGACTTA 59.867 40.000 0.00 0.00 35.05 2.24
368 667 6.183361 ACCCAACCAACTAAAAGAGGACTTAT 60.183 38.462 0.00 0.00 35.05 1.73
369 668 6.719829 CCCAACCAACTAAAAGAGGACTTATT 59.280 38.462 0.00 0.00 35.05 1.40
370 669 7.094334 CCCAACCAACTAAAAGAGGACTTATTC 60.094 40.741 0.00 0.00 35.05 1.75
371 670 7.665974 CCAACCAACTAAAAGAGGACTTATTCT 59.334 37.037 0.00 0.00 35.05 2.40
372 671 9.067986 CAACCAACTAAAAGAGGACTTATTCTT 57.932 33.333 0.00 0.00 35.05 2.52
411 710 7.636150 AATTTGCTAGCACATGAGAATTACT 57.364 32.000 19.17 0.00 0.00 2.24
416 715 7.730084 TGCTAGCACATGAGAATTACTAGAAT 58.270 34.615 14.93 0.00 0.00 2.40
420 719 8.016301 AGCACATGAGAATTACTAGAATGAGA 57.984 34.615 0.00 0.00 0.00 3.27
434 733 4.192317 AGAATGAGAAGATTTGTACCGCC 58.808 43.478 0.00 0.00 0.00 6.13
444 743 8.364894 AGAAGATTTGTACCGCCTTTTATTTTT 58.635 29.630 0.00 0.00 0.00 1.94
445 744 8.528917 AAGATTTGTACCGCCTTTTATTTTTC 57.471 30.769 0.00 0.00 0.00 2.29
446 745 7.662897 AGATTTGTACCGCCTTTTATTTTTCA 58.337 30.769 0.00 0.00 0.00 2.69
447 746 8.311109 AGATTTGTACCGCCTTTTATTTTTCAT 58.689 29.630 0.00 0.00 0.00 2.57
448 747 7.644986 TTTGTACCGCCTTTTATTTTTCATG 57.355 32.000 0.00 0.00 0.00 3.07
449 748 6.576662 TGTACCGCCTTTTATTTTTCATGA 57.423 33.333 0.00 0.00 0.00 3.07
474 773 8.794335 ACAAGAACAACTACTCTTTTCTTTCT 57.206 30.769 0.00 0.00 34.93 2.52
475 774 9.232473 ACAAGAACAACTACTCTTTTCTTTCTT 57.768 29.630 0.00 0.00 34.93 2.52
477 776 9.449719 AAGAACAACTACTCTTTTCTTTCTTGA 57.550 29.630 0.00 0.00 33.68 3.02
491 790 0.178944 TCTTGACCCAACTCGGAGGA 60.179 55.000 10.23 0.00 36.56 3.71
497 796 1.078848 CCAACTCGGAGGAGCTTGG 60.079 63.158 10.23 9.98 44.48 3.61
513 812 1.312371 TTGGGCCATTTACGAGCTGC 61.312 55.000 7.26 0.00 0.00 5.25
516 815 1.221414 GGCCATTTACGAGCTGCTAG 58.779 55.000 0.15 4.89 0.00 3.42
517 816 1.202533 GGCCATTTACGAGCTGCTAGA 60.203 52.381 16.78 0.00 0.00 2.43
538 837 3.074281 CGGGCCAAGTTGACCCTA 58.926 61.111 23.25 0.00 41.86 3.53
566 865 1.398958 GCAAGCCCAAACCTGGTCAA 61.399 55.000 0.00 0.00 41.72 3.18
586 885 6.183360 GGTCAAGAACTCATTGGATCTAGCTA 60.183 42.308 0.00 0.00 0.00 3.32
593 892 6.991938 ACTCATTGGATCTAGCTATTCTCAC 58.008 40.000 0.00 0.00 0.00 3.51
619 918 4.676196 GCGTGATTCGGGTTAGAAGTTAGA 60.676 45.833 0.00 0.00 40.26 2.10
624 923 1.761198 CGGGTTAGAAGTTAGAGGGGG 59.239 57.143 0.00 0.00 0.00 5.40
648 947 1.293498 GCAGAAGAGGGCGAGACAA 59.707 57.895 0.00 0.00 0.00 3.18
650 949 0.605589 CAGAAGAGGGCGAGACAACT 59.394 55.000 0.00 0.00 0.00 3.16
652 951 0.892063 GAAGAGGGCGAGACAACTCT 59.108 55.000 0.00 0.00 41.77 3.24
653 952 0.605589 AAGAGGGCGAGACAACTCTG 59.394 55.000 0.00 0.00 40.01 3.35
654 953 1.216710 GAGGGCGAGACAACTCTGG 59.783 63.158 0.00 0.00 40.65 3.86
655 954 2.435059 GGGCGAGACAACTCTGGC 60.435 66.667 0.00 0.00 45.19 4.85
657 956 2.343758 GCGAGACAACTCTGGCCA 59.656 61.111 4.71 4.71 41.26 5.36
658 957 1.739562 GCGAGACAACTCTGGCCAG 60.740 63.158 27.87 27.87 41.26 4.85
659 958 1.967535 CGAGACAACTCTGGCCAGA 59.032 57.895 33.04 33.04 40.65 3.86
660 959 0.534412 CGAGACAACTCTGGCCAGAT 59.466 55.000 35.11 21.16 40.65 2.90
661 960 1.066573 CGAGACAACTCTGGCCAGATT 60.067 52.381 35.11 27.24 40.65 2.40
662 961 2.354259 GAGACAACTCTGGCCAGATTG 58.646 52.381 33.40 33.40 39.78 2.67
663 962 1.004044 AGACAACTCTGGCCAGATTGG 59.996 52.381 35.43 30.61 41.55 3.16
664 963 1.003580 GACAACTCTGGCCAGATTGGA 59.996 52.381 35.43 20.83 40.96 3.53
675 974 5.489792 GGCCAGATTGGACTCATATAAGA 57.510 43.478 0.00 0.00 44.12 2.10
676 975 5.486526 GGCCAGATTGGACTCATATAAGAG 58.513 45.833 0.00 3.44 44.12 2.85
677 976 4.934602 GCCAGATTGGACTCATATAAGAGC 59.065 45.833 4.89 0.00 40.96 4.09
678 977 5.512060 GCCAGATTGGACTCATATAAGAGCA 60.512 44.000 4.89 0.00 40.96 4.26
679 978 6.709281 CCAGATTGGACTCATATAAGAGCAT 58.291 40.000 4.89 0.00 40.96 3.79
680 979 6.594547 CCAGATTGGACTCATATAAGAGCATG 59.405 42.308 4.89 0.00 40.96 4.06
681 980 6.594547 CAGATTGGACTCATATAAGAGCATGG 59.405 42.308 4.89 0.00 39.26 3.66
682 981 5.894298 TTGGACTCATATAAGAGCATGGT 57.106 39.130 4.89 0.00 39.26 3.55
683 982 5.219343 TGGACTCATATAAGAGCATGGTG 57.781 43.478 0.00 0.00 39.26 4.17
684 983 3.999663 GGACTCATATAAGAGCATGGTGC 59.000 47.826 0.00 0.00 45.46 5.01
694 993 3.079131 GCATGGTGCGATGTAAGGA 57.921 52.632 0.00 0.00 31.71 3.36
699 998 2.147958 TGGTGCGATGTAAGGACAAAC 58.852 47.619 0.00 0.00 39.59 2.93
733 1032 9.454585 ACAAAATATGTTGCGAATCAGAATATG 57.545 29.630 5.48 0.00 40.06 1.78
744 1043 7.710475 TGCGAATCAGAATATGTTGTAGAATCA 59.290 33.333 0.00 0.00 0.00 2.57
760 1065 6.938030 TGTAGAATCAAAATGTAAACCCGACT 59.062 34.615 0.00 0.00 0.00 4.18
762 1067 9.106070 GTAGAATCAAAATGTAAACCCGACTAT 57.894 33.333 0.00 0.00 0.00 2.12
763 1068 7.985476 AGAATCAAAATGTAAACCCGACTATG 58.015 34.615 0.00 0.00 0.00 2.23
907 1213 4.260985 TGCAGTGACACAATTATCGGATT 58.739 39.130 8.59 0.00 0.00 3.01
928 1234 2.222027 GTGACAAAGAGGTGGTCCAAG 58.778 52.381 0.00 0.00 35.89 3.61
1023 1329 3.903281 AAACCACCGGGCATGGCAT 62.903 57.895 22.06 2.62 41.31 4.40
1060 1366 3.378112 TCTCCATTATTGCGCTTTCCTTG 59.622 43.478 9.73 0.00 0.00 3.61
1091 1397 2.206515 CTTGAGAGCTCACGCCGTCT 62.207 60.000 17.77 0.00 39.66 4.18
1093 1399 4.427661 AGAGCTCACGCCGTCTGC 62.428 66.667 17.77 3.19 36.60 4.26
1570 1876 0.179111 TGCAGTAGTAGATGCGTGCC 60.179 55.000 3.51 0.00 45.54 5.01
1600 1907 1.661341 GCTCTCGCCAGATTGTGATT 58.339 50.000 0.00 0.00 0.00 2.57
1601 1908 2.799562 CGCTCTCGCCAGATTGTGATTA 60.800 50.000 0.00 0.00 0.00 1.75
1655 1964 1.137872 GTGCTACCTCCATCCAGTCTG 59.862 57.143 0.00 0.00 0.00 3.51
1662 1971 2.692557 CCTCCATCCAGTCTGTGTAGAG 59.307 54.545 0.00 0.35 32.48 2.43
1669 1978 1.203523 CAGTCTGTGTAGAGTGCCTCC 59.796 57.143 0.00 0.00 44.82 4.30
1684 1993 1.490574 CCTCCTAGTTACCAGCTGCT 58.509 55.000 8.66 0.00 0.00 4.24
1709 2018 5.751243 TCTGCAAAAGAACAGTAGTTTCC 57.249 39.130 0.00 0.00 38.30 3.13
1710 2019 5.189928 TCTGCAAAAGAACAGTAGTTTCCA 58.810 37.500 0.00 0.00 38.30 3.53
1711 2020 5.650266 TCTGCAAAAGAACAGTAGTTTCCAA 59.350 36.000 0.00 0.00 38.30 3.53
1787 2096 7.279615 TGAGAGTTCTTGTTGGATAACTTCAA 58.720 34.615 0.00 0.00 37.68 2.69
1864 2178 9.775854 ATCAAGTTTGAGTCTATATTCATGAGG 57.224 33.333 0.00 0.00 41.08 3.86
1868 2182 8.986991 AGTTTGAGTCTATATTCATGAGGTCTT 58.013 33.333 0.00 0.00 0.00 3.01
1876 2190 3.459232 TTCATGAGGTCTTATGCGGAG 57.541 47.619 0.00 0.00 0.00 4.63
1894 2208 3.171277 GGAGATCCGTGCAAAATTTTCG 58.829 45.455 0.00 2.04 0.00 3.46
1898 2212 4.444056 AGATCCGTGCAAAATTTTCGTTTG 59.556 37.500 0.00 0.00 38.69 2.93
1902 2216 4.190304 GTGCAAAATTTTCGTTTGGACC 57.810 40.909 0.00 0.00 45.95 4.46
1908 2229 6.183360 GCAAAATTTTCGTTTGGACCTTTTCT 60.183 34.615 0.00 0.00 36.64 2.52
1913 2234 9.438228 AATTTTCGTTTGGACCTTTTCTTTTTA 57.562 25.926 0.00 0.00 0.00 1.52
1920 2241 8.600625 GTTTGGACCTTTTCTTTTTAACATGTC 58.399 33.333 0.00 0.00 0.00 3.06
1921 2242 7.654022 TGGACCTTTTCTTTTTAACATGTCT 57.346 32.000 0.00 0.00 0.00 3.41
1926 2247 8.527810 ACCTTTTCTTTTTAACATGTCTTGTCA 58.472 29.630 0.00 0.00 37.68 3.58
1932 2253 8.397906 TCTTTTTAACATGTCTTGTCACTTGAG 58.602 33.333 0.00 0.00 37.68 3.02
1987 2310 3.018423 AGCCACCCATCAATAAACCTC 57.982 47.619 0.00 0.00 0.00 3.85
1989 2312 3.785887 AGCCACCCATCAATAAACCTCTA 59.214 43.478 0.00 0.00 0.00 2.43
2072 2395 6.070995 TCCTAAAAGTATTCGAGGTGTGTCAT 60.071 38.462 0.00 0.00 0.00 3.06
2129 2452 8.429641 TGAATCCTACTTCTTTCTAAAGTGTGT 58.570 33.333 2.58 3.65 37.52 3.72
2137 2460 0.753867 TCTAAAGTGTGTCACCGCCA 59.246 50.000 0.00 0.00 34.49 5.69
2140 2463 0.393808 AAAGTGTGTCACCGCCAGTT 60.394 50.000 0.00 0.00 34.49 3.16
2167 2490 3.710722 CCGGAGCAAGCCTGACCT 61.711 66.667 0.00 0.00 0.00 3.85
2168 2491 2.435586 CGGAGCAAGCCTGACCTG 60.436 66.667 0.00 0.00 0.00 4.00
2169 2492 2.749441 GGAGCAAGCCTGACCTGC 60.749 66.667 0.00 0.00 0.00 4.85
2170 2493 2.033141 GAGCAAGCCTGACCTGCA 59.967 61.111 0.00 0.00 0.00 4.41
2171 2494 2.282040 AGCAAGCCTGACCTGCAC 60.282 61.111 0.00 0.00 0.00 4.57
2172 2495 3.368571 GCAAGCCTGACCTGCACC 61.369 66.667 0.00 0.00 0.00 5.01
2173 2496 2.674380 CAAGCCTGACCTGCACCC 60.674 66.667 0.00 0.00 0.00 4.61
2174 2497 3.971702 AAGCCTGACCTGCACCCC 61.972 66.667 0.00 0.00 0.00 4.95
2177 2500 4.704833 CCTGACCTGCACCCCGTG 62.705 72.222 0.00 0.00 36.51 4.94
2178 2501 4.704833 CTGACCTGCACCCCGTGG 62.705 72.222 0.00 0.00 33.64 4.94
2185 2508 4.778143 GCACCCCGTGGCGATTCT 62.778 66.667 0.00 0.00 33.64 2.40
2186 2509 2.897207 CACCCCGTGGCGATTCTA 59.103 61.111 0.00 0.00 33.59 2.10
2187 2510 1.520787 CACCCCGTGGCGATTCTAC 60.521 63.158 0.00 0.00 33.59 2.59
2188 2511 2.108362 CCCCGTGGCGATTCTACC 59.892 66.667 0.00 0.00 0.00 3.18
2189 2512 2.279252 CCCGTGGCGATTCTACCG 60.279 66.667 0.00 0.00 0.00 4.02
2190 2513 2.279252 CCGTGGCGATTCTACCGG 60.279 66.667 0.00 0.00 0.00 5.28
2191 2514 2.279252 CGTGGCGATTCTACCGGG 60.279 66.667 6.32 0.00 0.00 5.73
2192 2515 2.588034 GTGGCGATTCTACCGGGC 60.588 66.667 6.32 0.00 0.00 6.13
2193 2516 3.078196 TGGCGATTCTACCGGGCA 61.078 61.111 6.32 0.00 0.00 5.36
2194 2517 2.426023 GGCGATTCTACCGGGCAT 59.574 61.111 6.32 0.00 0.00 4.40
2195 2518 1.961277 GGCGATTCTACCGGGCATG 60.961 63.158 6.32 0.00 0.00 4.06
2196 2519 2.607892 GCGATTCTACCGGGCATGC 61.608 63.158 9.90 9.90 0.00 4.06
2197 2520 1.069765 CGATTCTACCGGGCATGCT 59.930 57.895 18.92 0.00 0.00 3.79
2198 2521 0.532862 CGATTCTACCGGGCATGCTT 60.533 55.000 18.92 2.26 0.00 3.91
2199 2522 1.230324 GATTCTACCGGGCATGCTTC 58.770 55.000 18.92 9.48 0.00 3.86
2200 2523 0.546122 ATTCTACCGGGCATGCTTCA 59.454 50.000 18.92 0.00 0.00 3.02
2201 2524 0.326595 TTCTACCGGGCATGCTTCAA 59.673 50.000 18.92 0.00 0.00 2.69
2202 2525 0.392461 TCTACCGGGCATGCTTCAAC 60.392 55.000 18.92 0.00 0.00 3.18
2203 2526 0.676466 CTACCGGGCATGCTTCAACA 60.676 55.000 18.92 0.00 0.00 3.33
2204 2527 0.676466 TACCGGGCATGCTTCAACAG 60.676 55.000 18.92 0.59 0.00 3.16
2205 2528 2.703798 CCGGGCATGCTTCAACAGG 61.704 63.158 18.92 6.66 0.00 4.00
2206 2529 2.575461 GGGCATGCTTCAACAGGC 59.425 61.111 18.92 0.00 46.20 4.85
2207 2530 1.980772 GGGCATGCTTCAACAGGCT 60.981 57.895 18.92 0.00 46.16 4.58
2208 2531 1.509923 GGCATGCTTCAACAGGCTC 59.490 57.895 18.92 0.00 46.16 4.70
2209 2532 1.246056 GGCATGCTTCAACAGGCTCA 61.246 55.000 18.92 0.00 46.16 4.26
2210 2533 0.599558 GCATGCTTCAACAGGCTCAA 59.400 50.000 11.37 0.00 43.69 3.02
2211 2534 1.402456 GCATGCTTCAACAGGCTCAAG 60.402 52.381 11.37 0.00 43.69 3.02
2212 2535 0.886563 ATGCTTCAACAGGCTCAAGC 59.113 50.000 9.14 9.14 41.43 4.01
2222 2545 2.438075 GCTCAAGCCTGCCCTCTG 60.438 66.667 0.00 0.00 34.31 3.35
2223 2546 2.964310 GCTCAAGCCTGCCCTCTGA 61.964 63.158 0.00 0.00 34.31 3.27
2224 2547 1.681666 CTCAAGCCTGCCCTCTGAA 59.318 57.895 0.00 0.00 0.00 3.02
2225 2548 0.037303 CTCAAGCCTGCCCTCTGAAA 59.963 55.000 0.00 0.00 0.00 2.69
2226 2549 0.250901 TCAAGCCTGCCCTCTGAAAC 60.251 55.000 0.00 0.00 0.00 2.78
2227 2550 0.251077 CAAGCCTGCCCTCTGAAACT 60.251 55.000 0.00 0.00 0.00 2.66
2228 2551 0.251077 AAGCCTGCCCTCTGAAACTG 60.251 55.000 0.00 0.00 0.00 3.16
2229 2552 1.130054 AGCCTGCCCTCTGAAACTGA 61.130 55.000 0.00 0.00 0.00 3.41
2230 2553 0.250901 GCCTGCCCTCTGAAACTGAA 60.251 55.000 0.00 0.00 0.00 3.02
2231 2554 1.819305 GCCTGCCCTCTGAAACTGAAA 60.819 52.381 0.00 0.00 0.00 2.69
2232 2555 2.586425 CCTGCCCTCTGAAACTGAAAA 58.414 47.619 0.00 0.00 0.00 2.29
2233 2556 2.958355 CCTGCCCTCTGAAACTGAAAAA 59.042 45.455 0.00 0.00 0.00 1.94
2234 2557 3.243535 CCTGCCCTCTGAAACTGAAAAAC 60.244 47.826 0.00 0.00 0.00 2.43
2235 2558 2.357637 TGCCCTCTGAAACTGAAAAACG 59.642 45.455 0.00 0.00 0.00 3.60
2236 2559 2.616842 GCCCTCTGAAACTGAAAAACGA 59.383 45.455 0.00 0.00 0.00 3.85
2237 2560 3.066203 GCCCTCTGAAACTGAAAAACGAA 59.934 43.478 0.00 0.00 0.00 3.85
2238 2561 4.439563 GCCCTCTGAAACTGAAAAACGAAA 60.440 41.667 0.00 0.00 0.00 3.46
2239 2562 5.646606 CCCTCTGAAACTGAAAAACGAAAA 58.353 37.500 0.00 0.00 0.00 2.29
2240 2563 6.273071 CCCTCTGAAACTGAAAAACGAAAAT 58.727 36.000 0.00 0.00 0.00 1.82
2241 2564 6.756542 CCCTCTGAAACTGAAAAACGAAAATT 59.243 34.615 0.00 0.00 0.00 1.82
2242 2565 7.277760 CCCTCTGAAACTGAAAAACGAAAATTT 59.722 33.333 0.00 0.00 0.00 1.82
2243 2566 9.296400 CCTCTGAAACTGAAAAACGAAAATTTA 57.704 29.630 0.00 0.00 0.00 1.40
2245 2568 9.849166 TCTGAAACTGAAAAACGAAAATTTACT 57.151 25.926 0.00 0.00 0.00 2.24
2260 2583 9.764870 CGAAAATTTACTACTAGTTTTTAGCCC 57.235 33.333 0.00 0.00 0.00 5.19
2264 2587 9.749340 AATTTACTACTAGTTTTTAGCCCATGT 57.251 29.630 0.00 0.00 0.00 3.21
2265 2588 8.782339 TTTACTACTAGTTTTTAGCCCATGTC 57.218 34.615 0.00 0.00 0.00 3.06
2266 2589 6.368779 ACTACTAGTTTTTAGCCCATGTCA 57.631 37.500 0.00 0.00 0.00 3.58
2267 2590 6.407202 ACTACTAGTTTTTAGCCCATGTCAG 58.593 40.000 0.00 0.00 0.00 3.51
2268 2591 4.010349 ACTAGTTTTTAGCCCATGTCAGC 58.990 43.478 0.00 0.00 0.00 4.26
2269 2592 2.171003 AGTTTTTAGCCCATGTCAGCC 58.829 47.619 0.00 0.00 0.00 4.85
2270 2593 1.204704 GTTTTTAGCCCATGTCAGCCC 59.795 52.381 0.00 0.00 0.00 5.19
2271 2594 0.407528 TTTTAGCCCATGTCAGCCCA 59.592 50.000 0.00 0.00 0.00 5.36
2272 2595 0.323360 TTTAGCCCATGTCAGCCCAC 60.323 55.000 0.00 0.00 0.00 4.61
2273 2596 1.207488 TTAGCCCATGTCAGCCCACT 61.207 55.000 0.00 0.00 0.00 4.00
2274 2597 1.913951 TAGCCCATGTCAGCCCACTG 61.914 60.000 0.00 0.00 45.95 3.66
2275 2598 2.759114 CCCATGTCAGCCCACTGT 59.241 61.111 0.00 0.00 44.77 3.55
2276 2599 1.377725 CCCATGTCAGCCCACTGTC 60.378 63.158 0.00 0.00 44.77 3.51
2277 2600 1.681666 CCATGTCAGCCCACTGTCT 59.318 57.895 0.00 0.00 44.77 3.41
2278 2601 0.904649 CCATGTCAGCCCACTGTCTA 59.095 55.000 0.00 0.00 44.77 2.59
2279 2602 1.134580 CCATGTCAGCCCACTGTCTAG 60.135 57.143 0.00 0.00 44.77 2.43
2280 2603 1.552337 CATGTCAGCCCACTGTCTAGT 59.448 52.381 0.00 0.00 44.77 2.57
2294 2617 5.511363 ACTGTCTAGTGTCTAGCCTATTGT 58.489 41.667 0.00 0.00 35.34 2.71
2295 2618 5.952947 ACTGTCTAGTGTCTAGCCTATTGTT 59.047 40.000 0.00 0.00 35.34 2.83
2296 2619 6.437793 ACTGTCTAGTGTCTAGCCTATTGTTT 59.562 38.462 0.00 0.00 35.34 2.83
2297 2620 7.614583 ACTGTCTAGTGTCTAGCCTATTGTTTA 59.385 37.037 0.00 0.00 35.34 2.01
2298 2621 7.769220 TGTCTAGTGTCTAGCCTATTGTTTAC 58.231 38.462 0.00 0.00 0.00 2.01
2299 2622 7.395206 TGTCTAGTGTCTAGCCTATTGTTTACA 59.605 37.037 0.00 0.00 0.00 2.41
2300 2623 8.414778 GTCTAGTGTCTAGCCTATTGTTTACAT 58.585 37.037 0.00 0.00 0.00 2.29
2301 2624 8.414003 TCTAGTGTCTAGCCTATTGTTTACATG 58.586 37.037 0.00 0.00 0.00 3.21
2302 2625 6.947464 AGTGTCTAGCCTATTGTTTACATGT 58.053 36.000 2.69 2.69 0.00 3.21
2303 2626 7.394816 AGTGTCTAGCCTATTGTTTACATGTT 58.605 34.615 2.30 0.00 0.00 2.71
2304 2627 7.549488 AGTGTCTAGCCTATTGTTTACATGTTC 59.451 37.037 2.30 0.00 0.00 3.18
2305 2628 7.549488 GTGTCTAGCCTATTGTTTACATGTTCT 59.451 37.037 2.30 0.00 0.00 3.01
2306 2629 8.755028 TGTCTAGCCTATTGTTTACATGTTCTA 58.245 33.333 2.30 0.00 0.00 2.10
2307 2630 9.595823 GTCTAGCCTATTGTTTACATGTTCTAA 57.404 33.333 2.30 0.00 0.00 2.10
2308 2631 9.595823 TCTAGCCTATTGTTTACATGTTCTAAC 57.404 33.333 2.30 7.40 0.00 2.34
2309 2632 7.625828 AGCCTATTGTTTACATGTTCTAACC 57.374 36.000 2.30 0.00 0.00 2.85
2310 2633 6.602009 AGCCTATTGTTTACATGTTCTAACCC 59.398 38.462 2.30 0.00 0.00 4.11
2311 2634 6.602009 GCCTATTGTTTACATGTTCTAACCCT 59.398 38.462 2.30 0.31 0.00 4.34
2312 2635 7.122204 GCCTATTGTTTACATGTTCTAACCCTT 59.878 37.037 2.30 0.00 0.00 3.95
2313 2636 8.458843 CCTATTGTTTACATGTTCTAACCCTTG 58.541 37.037 2.30 0.00 0.00 3.61
2314 2637 7.833285 ATTGTTTACATGTTCTAACCCTTGT 57.167 32.000 2.30 0.00 0.00 3.16
2315 2638 8.927675 ATTGTTTACATGTTCTAACCCTTGTA 57.072 30.769 2.30 0.00 0.00 2.41
2316 2639 8.927675 TTGTTTACATGTTCTAACCCTTGTAT 57.072 30.769 2.30 0.00 0.00 2.29
2317 2640 8.927675 TGTTTACATGTTCTAACCCTTGTATT 57.072 30.769 2.30 0.00 0.00 1.89
2318 2641 8.788806 TGTTTACATGTTCTAACCCTTGTATTG 58.211 33.333 2.30 0.00 0.00 1.90
2319 2642 9.005777 GTTTACATGTTCTAACCCTTGTATTGA 57.994 33.333 2.30 0.00 0.00 2.57
2320 2643 8.786826 TTACATGTTCTAACCCTTGTATTGAG 57.213 34.615 2.30 0.00 0.00 3.02
2321 2644 7.016153 ACATGTTCTAACCCTTGTATTGAGA 57.984 36.000 0.00 0.00 0.00 3.27
2322 2645 7.458397 ACATGTTCTAACCCTTGTATTGAGAA 58.542 34.615 0.00 0.00 0.00 2.87
2323 2646 7.607991 ACATGTTCTAACCCTTGTATTGAGAAG 59.392 37.037 0.00 0.00 0.00 2.85
2324 2647 7.074653 TGTTCTAACCCTTGTATTGAGAAGT 57.925 36.000 0.00 0.00 0.00 3.01
2325 2648 7.514721 TGTTCTAACCCTTGTATTGAGAAGTT 58.485 34.615 0.00 0.00 0.00 2.66
2326 2649 7.444183 TGTTCTAACCCTTGTATTGAGAAGTTG 59.556 37.037 0.00 0.00 0.00 3.16
2327 2650 7.311092 TCTAACCCTTGTATTGAGAAGTTGA 57.689 36.000 0.00 0.00 0.00 3.18
2328 2651 7.386851 TCTAACCCTTGTATTGAGAAGTTGAG 58.613 38.462 0.00 0.00 0.00 3.02
2329 2652 4.327680 ACCCTTGTATTGAGAAGTTGAGC 58.672 43.478 0.00 0.00 0.00 4.26
2330 2653 3.691609 CCCTTGTATTGAGAAGTTGAGCC 59.308 47.826 0.00 0.00 0.00 4.70
2331 2654 4.566488 CCCTTGTATTGAGAAGTTGAGCCT 60.566 45.833 0.00 0.00 0.00 4.58
2332 2655 4.394300 CCTTGTATTGAGAAGTTGAGCCTG 59.606 45.833 0.00 0.00 0.00 4.85
2333 2656 3.338249 TGTATTGAGAAGTTGAGCCTGC 58.662 45.455 0.00 0.00 0.00 4.85
2334 2657 1.831580 ATTGAGAAGTTGAGCCTGCC 58.168 50.000 0.00 0.00 0.00 4.85
2335 2658 0.250901 TTGAGAAGTTGAGCCTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
2336 2659 1.130054 TGAGAAGTTGAGCCTGCCCT 61.130 55.000 0.00 0.00 0.00 5.19
2337 2660 0.037447 GAGAAGTTGAGCCTGCCCTT 59.963 55.000 0.00 0.00 0.00 3.95
2338 2661 0.480252 AGAAGTTGAGCCTGCCCTTT 59.520 50.000 0.00 0.00 0.00 3.11
2339 2662 1.705186 AGAAGTTGAGCCTGCCCTTTA 59.295 47.619 0.00 0.00 0.00 1.85
2340 2663 2.310052 AGAAGTTGAGCCTGCCCTTTAT 59.690 45.455 0.00 0.00 0.00 1.40
2341 2664 2.907458 AGTTGAGCCTGCCCTTTATT 57.093 45.000 0.00 0.00 0.00 1.40
2342 2665 3.175438 AGTTGAGCCTGCCCTTTATTT 57.825 42.857 0.00 0.00 0.00 1.40
2343 2666 3.510459 AGTTGAGCCTGCCCTTTATTTT 58.490 40.909 0.00 0.00 0.00 1.82
2344 2667 3.511540 AGTTGAGCCTGCCCTTTATTTTC 59.488 43.478 0.00 0.00 0.00 2.29
2345 2668 3.168035 TGAGCCTGCCCTTTATTTTCA 57.832 42.857 0.00 0.00 0.00 2.69
2346 2669 3.711863 TGAGCCTGCCCTTTATTTTCAT 58.288 40.909 0.00 0.00 0.00 2.57
2347 2670 3.701040 TGAGCCTGCCCTTTATTTTCATC 59.299 43.478 0.00 0.00 0.00 2.92
2348 2671 3.956848 GAGCCTGCCCTTTATTTTCATCT 59.043 43.478 0.00 0.00 0.00 2.90
2349 2672 5.129368 AGCCTGCCCTTTATTTTCATCTA 57.871 39.130 0.00 0.00 0.00 1.98
2350 2673 5.518865 AGCCTGCCCTTTATTTTCATCTAA 58.481 37.500 0.00 0.00 0.00 2.10
2351 2674 5.595952 AGCCTGCCCTTTATTTTCATCTAAG 59.404 40.000 0.00 0.00 0.00 2.18
2352 2675 5.594317 GCCTGCCCTTTATTTTCATCTAAGA 59.406 40.000 0.00 0.00 0.00 2.10
2353 2676 6.266330 GCCTGCCCTTTATTTTCATCTAAGAT 59.734 38.462 0.00 0.00 0.00 2.40
2354 2677 7.201947 GCCTGCCCTTTATTTTCATCTAAGATT 60.202 37.037 0.00 0.00 0.00 2.40
2355 2678 8.355913 CCTGCCCTTTATTTTCATCTAAGATTC 58.644 37.037 0.00 0.00 0.00 2.52
2356 2679 7.930217 TGCCCTTTATTTTCATCTAAGATTCG 58.070 34.615 0.00 0.00 0.00 3.34
2357 2680 7.556275 TGCCCTTTATTTTCATCTAAGATTCGT 59.444 33.333 0.00 0.00 0.00 3.85
2358 2681 8.070769 GCCCTTTATTTTCATCTAAGATTCGTC 58.929 37.037 0.00 0.00 0.00 4.20
2359 2682 9.109393 CCCTTTATTTTCATCTAAGATTCGTCA 57.891 33.333 0.00 0.00 0.00 4.35
2360 2683 9.922305 CCTTTATTTTCATCTAAGATTCGTCAC 57.078 33.333 0.00 0.00 0.00 3.67
2363 2686 6.408858 TTTTCATCTAAGATTCGTCACTGC 57.591 37.500 0.00 0.00 0.00 4.40
2364 2687 4.718940 TCATCTAAGATTCGTCACTGCA 57.281 40.909 0.00 0.00 0.00 4.41
2416 2739 1.339610 CCAATTGAAAGGCCACGTTGA 59.660 47.619 5.01 0.00 0.00 3.18
2452 2775 2.176581 TGGATACATTGCAATAGCCCCA 59.823 45.455 12.53 13.99 46.17 4.96
2626 3025 3.966543 CCCTGGCGTTTCCCCACT 61.967 66.667 0.00 0.00 0.00 4.00
2633 3032 1.208776 GGCGTTTCCCCACTAGTGTAT 59.791 52.381 21.18 0.00 0.00 2.29
2680 6305 4.602259 ACCGGCGGTGACACACTG 62.602 66.667 33.71 0.00 43.00 3.66
2762 6387 6.070424 ACCTCGAATACTTTTAGGACCAATGA 60.070 38.462 0.00 0.00 0.00 2.57
2783 6408 9.199982 CAATGATGGATTTTACTCATATTTGGC 57.800 33.333 0.00 0.00 0.00 4.52
2784 6409 7.894753 TGATGGATTTTACTCATATTTGGCA 57.105 32.000 0.00 0.00 0.00 4.92
2785 6410 8.303780 TGATGGATTTTACTCATATTTGGCAA 57.696 30.769 0.00 0.00 0.00 4.52
2786 6411 8.756927 TGATGGATTTTACTCATATTTGGCAAA 58.243 29.630 16.01 16.01 0.00 3.68
2787 6412 8.947055 ATGGATTTTACTCATATTTGGCAAAC 57.053 30.769 16.00 0.00 0.00 2.93
2788 6413 7.032580 TGGATTTTACTCATATTTGGCAAACG 58.967 34.615 16.00 7.15 0.00 3.60
2789 6414 7.033185 GGATTTTACTCATATTTGGCAAACGT 58.967 34.615 16.00 9.79 0.00 3.99
2790 6415 7.544217 GGATTTTACTCATATTTGGCAAACGTT 59.456 33.333 16.00 1.97 0.00 3.99
2791 6416 7.861176 TTTTACTCATATTTGGCAAACGTTC 57.139 32.000 16.00 0.00 0.00 3.95
2792 6417 6.561737 TTACTCATATTTGGCAAACGTTCA 57.438 33.333 16.00 0.00 0.00 3.18
2793 6418 4.794169 ACTCATATTTGGCAAACGTTCAC 58.206 39.130 16.00 0.00 0.00 3.18
2794 6419 4.518970 ACTCATATTTGGCAAACGTTCACT 59.481 37.500 16.00 0.00 0.00 3.41
2795 6420 4.793071 TCATATTTGGCAAACGTTCACTG 58.207 39.130 16.00 0.00 0.00 3.66
2796 6421 4.277174 TCATATTTGGCAAACGTTCACTGT 59.723 37.500 16.00 0.00 0.00 3.55
2797 6422 2.270275 TTTGGCAAACGTTCACTGTG 57.730 45.000 8.93 0.17 0.00 3.66
2798 6423 0.453793 TTGGCAAACGTTCACTGTGG 59.546 50.000 8.11 0.00 0.00 4.17
2799 6424 1.358759 GGCAAACGTTCACTGTGGG 59.641 57.895 8.11 0.66 0.00 4.61
2800 6425 1.381165 GGCAAACGTTCACTGTGGGT 61.381 55.000 8.11 1.30 0.00 4.51
2801 6426 0.248458 GCAAACGTTCACTGTGGGTG 60.248 55.000 8.11 0.00 46.60 4.61
2812 6437 1.410517 ACTGTGGGTGAGATATCAGCG 59.589 52.381 12.95 2.47 38.85 5.18
2813 6438 1.683385 CTGTGGGTGAGATATCAGCGA 59.317 52.381 12.95 6.79 38.85 4.93
2814 6439 2.101415 CTGTGGGTGAGATATCAGCGAA 59.899 50.000 12.95 1.81 38.85 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 0.892358 AGTAAGGCCACGACGTCTCA 60.892 55.000 14.70 0.00 0.00 3.27
79 80 0.038526 CAAGTAAGGCCACGACGTCT 60.039 55.000 14.70 0.00 0.00 4.18
80 81 1.623973 GCAAGTAAGGCCACGACGTC 61.624 60.000 5.01 5.18 0.00 4.34
81 82 1.666872 GCAAGTAAGGCCACGACGT 60.667 57.895 5.01 0.00 0.00 4.34
82 83 0.108992 TAGCAAGTAAGGCCACGACG 60.109 55.000 5.01 0.00 0.00 5.12
83 84 1.067071 AGTAGCAAGTAAGGCCACGAC 60.067 52.381 5.01 0.00 0.00 4.34
84 85 1.263356 AGTAGCAAGTAAGGCCACGA 58.737 50.000 5.01 0.00 0.00 4.35
85 86 2.953466 TAGTAGCAAGTAAGGCCACG 57.047 50.000 5.01 0.00 0.00 4.94
87 88 6.007703 ACAAAATTAGTAGCAAGTAAGGCCA 58.992 36.000 5.01 0.00 0.00 5.36
88 89 6.322491 CACAAAATTAGTAGCAAGTAAGGCC 58.678 40.000 0.00 0.00 0.00 5.19
89 90 5.800438 GCACAAAATTAGTAGCAAGTAAGGC 59.200 40.000 0.00 0.00 0.00 4.35
90 91 7.023575 CAGCACAAAATTAGTAGCAAGTAAGG 58.976 38.462 0.00 0.00 0.00 2.69
95 382 8.664798 TGTATACAGCACAAAATTAGTAGCAAG 58.335 33.333 0.08 0.00 0.00 4.01
98 385 8.004344 CGATGTATACAGCACAAAATTAGTAGC 58.996 37.037 20.29 0.00 31.58 3.58
101 388 6.821665 ACCGATGTATACAGCACAAAATTAGT 59.178 34.615 20.29 1.55 31.58 2.24
126 413 6.764379 TGCTCAATACAATACGGATAATCCA 58.236 36.000 0.00 0.00 35.91 3.41
163 450 1.614385 GACATGTACCGTCGACAGTG 58.386 55.000 17.16 5.77 0.00 3.66
172 459 2.795175 AATAGAGCCGACATGTACCG 57.205 50.000 0.00 0.00 0.00 4.02
196 483 8.854614 AATCAGAACTAACTCTTGTTATTGCT 57.145 30.769 0.00 0.00 37.92 3.91
213 500 4.451629 TCGAGGTAGTCCAAATCAGAAC 57.548 45.455 0.00 0.00 35.89 3.01
217 504 2.416836 CGCTTCGAGGTAGTCCAAATCA 60.417 50.000 0.00 0.00 35.89 2.57
233 520 2.405892 ACAGTGCAAAATGTCGCTTC 57.594 45.000 0.00 0.00 0.00 3.86
264 553 4.100808 AGCTAGTCATGATGGTCTTTCCTC 59.899 45.833 0.00 0.00 37.07 3.71
268 557 9.331282 GTAATAAAGCTAGTCATGATGGTCTTT 57.669 33.333 0.00 9.45 0.00 2.52
272 561 9.632638 AATTGTAATAAAGCTAGTCATGATGGT 57.367 29.630 0.00 0.00 0.00 3.55
309 600 0.735978 TGCGGCTCGTAGACAATGTG 60.736 55.000 0.00 0.00 0.00 3.21
314 605 2.196382 GACTGTGCGGCTCGTAGACA 62.196 60.000 0.00 0.00 0.00 3.41
316 607 1.923227 CTGACTGTGCGGCTCGTAGA 61.923 60.000 0.00 0.00 0.00 2.59
325 616 1.005748 TGAGCCTTCTGACTGTGCG 60.006 57.895 0.00 0.00 0.00 5.34
326 617 0.952984 GGTGAGCCTTCTGACTGTGC 60.953 60.000 0.00 0.00 0.00 4.57
329 628 0.397941 TTGGGTGAGCCTTCTGACTG 59.602 55.000 1.06 0.00 34.45 3.51
336 635 1.145571 TAGTTGGTTGGGTGAGCCTT 58.854 50.000 1.06 0.00 34.45 4.35
343 642 3.462205 AGTCCTCTTTTAGTTGGTTGGGT 59.538 43.478 0.00 0.00 0.00 4.51
344 643 4.100279 AGTCCTCTTTTAGTTGGTTGGG 57.900 45.455 0.00 0.00 0.00 4.12
345 644 7.665974 AGAATAAGTCCTCTTTTAGTTGGTTGG 59.334 37.037 0.00 0.00 35.36 3.77
368 667 9.336171 AGCAAATTTTGGCTTTTGTAATAAGAA 57.664 25.926 10.96 0.00 36.92 2.52
369 668 8.900983 AGCAAATTTTGGCTTTTGTAATAAGA 57.099 26.923 10.96 0.00 36.92 2.10
371 670 8.716909 GCTAGCAAATTTTGGCTTTTGTAATAA 58.283 29.630 10.63 0.00 41.41 1.40
372 671 7.875041 TGCTAGCAAATTTTGGCTTTTGTAATA 59.125 29.630 16.84 0.00 41.41 0.98
373 672 6.709846 TGCTAGCAAATTTTGGCTTTTGTAAT 59.290 30.769 16.84 0.00 41.41 1.89
388 687 8.206867 TCTAGTAATTCTCATGTGCTAGCAAAT 58.793 33.333 21.29 17.97 0.00 2.32
391 690 6.715347 TCTAGTAATTCTCATGTGCTAGCA 57.285 37.500 14.93 14.93 0.00 3.49
411 710 5.128827 AGGCGGTACAAATCTTCTCATTCTA 59.871 40.000 0.00 0.00 0.00 2.10
416 715 3.695830 AAGGCGGTACAAATCTTCTCA 57.304 42.857 0.00 0.00 0.00 3.27
420 719 8.145122 TGAAAAATAAAAGGCGGTACAAATCTT 58.855 29.630 0.00 0.00 0.00 2.40
444 743 7.987458 AGAAAAGAGTAGTTGTTCTTGTCATGA 59.013 33.333 7.06 0.00 39.22 3.07
445 744 8.147642 AGAAAAGAGTAGTTGTTCTTGTCATG 57.852 34.615 7.06 0.00 39.22 3.07
446 745 8.738645 AAGAAAAGAGTAGTTGTTCTTGTCAT 57.261 30.769 7.06 0.00 39.22 3.06
447 746 8.561738 AAAGAAAAGAGTAGTTGTTCTTGTCA 57.438 30.769 7.06 0.00 39.22 3.58
448 747 8.884726 AGAAAGAAAAGAGTAGTTGTTCTTGTC 58.115 33.333 0.00 0.00 38.28 3.18
449 748 8.794335 AGAAAGAAAAGAGTAGTTGTTCTTGT 57.206 30.769 0.00 0.00 38.28 3.16
474 773 1.827399 GCTCCTCCGAGTTGGGTCAA 61.827 60.000 0.00 0.00 38.49 3.18
475 774 2.283529 GCTCCTCCGAGTTGGGTCA 61.284 63.158 0.00 0.00 38.49 4.02
477 776 1.536662 AAGCTCCTCCGAGTTGGGT 60.537 57.895 0.00 0.00 38.49 4.51
491 790 1.032114 GCTCGTAAATGGCCCAAGCT 61.032 55.000 0.00 0.00 39.73 3.74
497 796 1.202533 TCTAGCAGCTCGTAAATGGCC 60.203 52.381 0.00 0.00 0.00 5.36
501 800 1.536284 GCCGTCTAGCAGCTCGTAAAT 60.536 52.381 0.00 0.00 0.00 1.40
513 812 3.310860 AACTTGGCCCGCCGTCTAG 62.311 63.158 0.00 0.00 39.42 2.43
566 865 7.508636 TGAGAATAGCTAGATCCAATGAGTTCT 59.491 37.037 0.00 0.00 0.00 3.01
593 892 0.457166 TCTAACCCGAATCACGCGTG 60.457 55.000 32.76 32.76 41.07 5.34
601 900 3.710165 CCCCTCTAACTTCTAACCCGAAT 59.290 47.826 0.00 0.00 0.00 3.34
624 923 4.847444 GCCCTCTTCTGCCGCTCC 62.847 72.222 0.00 0.00 0.00 4.70
629 928 2.172483 TTGTCTCGCCCTCTTCTGCC 62.172 60.000 0.00 0.00 0.00 4.85
635 934 1.254284 CCAGAGTTGTCTCGCCCTCT 61.254 60.000 0.00 0.00 44.65 3.69
645 944 1.067295 TCCAATCTGGCCAGAGTTGT 58.933 50.000 37.03 20.48 41.33 3.32
648 947 0.908198 GAGTCCAATCTGGCCAGAGT 59.092 55.000 37.03 33.47 41.33 3.24
650 949 1.588239 ATGAGTCCAATCTGGCCAGA 58.412 50.000 36.73 36.73 42.37 3.86
652 951 4.907269 TCTTATATGAGTCCAATCTGGCCA 59.093 41.667 4.71 4.71 37.47 5.36
653 952 5.486526 CTCTTATATGAGTCCAATCTGGCC 58.513 45.833 0.00 0.00 37.47 5.36
654 953 4.934602 GCTCTTATATGAGTCCAATCTGGC 59.065 45.833 15.05 0.00 34.55 4.85
655 954 6.106648 TGCTCTTATATGAGTCCAATCTGG 57.893 41.667 15.05 0.00 36.51 3.86
656 955 6.594547 CCATGCTCTTATATGAGTCCAATCTG 59.405 42.308 15.05 4.08 36.51 2.90
657 956 6.271857 ACCATGCTCTTATATGAGTCCAATCT 59.728 38.462 15.05 0.00 36.51 2.40
658 957 6.370994 CACCATGCTCTTATATGAGTCCAATC 59.629 42.308 15.05 1.17 36.51 2.67
659 958 6.236409 CACCATGCTCTTATATGAGTCCAAT 58.764 40.000 15.05 4.36 36.51 3.16
660 959 5.614308 CACCATGCTCTTATATGAGTCCAA 58.386 41.667 15.05 2.58 36.51 3.53
661 960 4.503817 GCACCATGCTCTTATATGAGTCCA 60.504 45.833 15.05 7.63 40.96 4.02
662 961 3.999663 GCACCATGCTCTTATATGAGTCC 59.000 47.826 15.05 2.92 40.96 3.85
663 962 3.677121 CGCACCATGCTCTTATATGAGTC 59.323 47.826 15.05 9.26 42.25 3.36
664 963 3.321968 TCGCACCATGCTCTTATATGAGT 59.678 43.478 15.05 0.00 42.25 3.41
665 964 3.917988 TCGCACCATGCTCTTATATGAG 58.082 45.455 10.56 10.56 42.25 2.90
666 965 4.248058 CATCGCACCATGCTCTTATATGA 58.752 43.478 0.00 0.00 42.25 2.15
667 966 3.999001 ACATCGCACCATGCTCTTATATG 59.001 43.478 0.00 0.00 42.25 1.78
668 967 4.277515 ACATCGCACCATGCTCTTATAT 57.722 40.909 0.00 0.00 42.25 0.86
669 968 3.751479 ACATCGCACCATGCTCTTATA 57.249 42.857 0.00 0.00 42.25 0.98
670 969 2.627515 ACATCGCACCATGCTCTTAT 57.372 45.000 0.00 0.00 42.25 1.73
671 970 3.457234 CTTACATCGCACCATGCTCTTA 58.543 45.455 0.00 0.00 42.25 2.10
672 971 2.283298 CTTACATCGCACCATGCTCTT 58.717 47.619 0.00 0.00 42.25 2.85
673 972 1.473965 CCTTACATCGCACCATGCTCT 60.474 52.381 0.00 0.00 42.25 4.09
674 973 0.940126 CCTTACATCGCACCATGCTC 59.060 55.000 0.00 0.00 42.25 4.26
675 974 0.541392 TCCTTACATCGCACCATGCT 59.459 50.000 0.00 0.00 42.25 3.79
676 975 0.657840 GTCCTTACATCGCACCATGC 59.342 55.000 0.00 0.00 40.69 4.06
677 976 2.022764 TGTCCTTACATCGCACCATG 57.977 50.000 0.00 0.00 0.00 3.66
678 977 2.747446 GTTTGTCCTTACATCGCACCAT 59.253 45.455 0.00 0.00 34.97 3.55
679 978 2.147958 GTTTGTCCTTACATCGCACCA 58.852 47.619 0.00 0.00 34.97 4.17
680 979 1.467342 GGTTTGTCCTTACATCGCACC 59.533 52.381 0.00 0.00 34.97 5.01
681 980 1.467342 GGGTTTGTCCTTACATCGCAC 59.533 52.381 0.00 0.00 34.97 5.34
682 981 1.612199 GGGGTTTGTCCTTACATCGCA 60.612 52.381 0.00 0.00 34.97 5.10
683 982 1.092348 GGGGTTTGTCCTTACATCGC 58.908 55.000 0.00 0.00 34.97 4.58
684 983 1.003812 TGGGGGTTTGTCCTTACATCG 59.996 52.381 0.00 0.00 34.97 3.84
694 993 6.007485 ACATATTTTGTTTTGGGGGTTTGT 57.993 33.333 0.00 0.00 33.74 2.83
699 998 3.434984 CGCAACATATTTTGTTTTGGGGG 59.565 43.478 3.67 0.00 46.51 5.40
733 1032 7.536281 GTCGGGTTTACATTTTGATTCTACAAC 59.464 37.037 0.00 0.00 0.00 3.32
751 1056 9.856162 ACCATATTTTATAACATAGTCGGGTTT 57.144 29.630 0.00 0.00 0.00 3.27
760 1065 8.277018 CGCAACGTCACCATATTTTATAACATA 58.723 33.333 0.00 0.00 0.00 2.29
762 1067 6.313164 TCGCAACGTCACCATATTTTATAACA 59.687 34.615 0.00 0.00 0.00 2.41
763 1068 6.707711 TCGCAACGTCACCATATTTTATAAC 58.292 36.000 0.00 0.00 0.00 1.89
882 1188 4.332543 TCCGATAATTGTGTCACTGCATTC 59.667 41.667 4.27 0.00 0.00 2.67
907 1213 1.208706 TGGACCACCTCTTTGTCACA 58.791 50.000 0.00 0.00 37.04 3.58
1060 1366 1.667467 GCTCTCAAGTGTGGTCGACTC 60.667 57.143 16.46 9.70 0.00 3.36
1093 1399 0.392998 ACGCCATTGGTTGCCTCTAG 60.393 55.000 4.26 0.00 0.00 2.43
1153 1459 1.301293 GAGCTCCCACTTGAAGGGG 59.699 63.158 6.48 6.48 46.77 4.79
1570 1876 2.202362 CGAGAGCGGACACGACAG 60.202 66.667 0.00 0.00 44.60 3.51
1637 1946 1.137872 CACAGACTGGATGGAGGTAGC 59.862 57.143 7.51 0.00 0.00 3.58
1662 1971 1.134670 CAGCTGGTAACTAGGAGGCAC 60.135 57.143 5.57 0.00 37.61 5.01
1669 1978 4.054671 GCAGATTAGCAGCTGGTAACTAG 58.945 47.826 33.98 26.12 40.28 2.57
1684 1993 7.500892 TGGAAACTACTGTTCTTTTGCAGATTA 59.499 33.333 0.00 0.00 34.96 1.75
1709 2018 6.573725 GCAGTTACGTCTATTTTTGACACTTG 59.426 38.462 0.00 0.00 34.37 3.16
1710 2019 6.482308 AGCAGTTACGTCTATTTTTGACACTT 59.518 34.615 0.00 0.00 34.37 3.16
1711 2020 5.989777 AGCAGTTACGTCTATTTTTGACACT 59.010 36.000 0.00 0.00 34.37 3.55
1745 2054 8.133627 AGAACTCTCAAACAAAATTCTGACATG 58.866 33.333 0.00 0.00 0.00 3.21
1763 2072 7.569591 CGTTGAAGTTATCCAACAAGAACTCTC 60.570 40.741 0.00 0.00 41.85 3.20
1787 2096 7.887996 TTATTCGACAAGGTTACAATAACGT 57.112 32.000 0.00 0.00 0.00 3.99
1838 2147 9.775854 CCTCATGAATATAGACTCAAACTTGAT 57.224 33.333 0.00 0.00 36.46 2.57
1847 2156 7.700234 CGCATAAGACCTCATGAATATAGACTC 59.300 40.741 0.00 0.00 0.00 3.36
1850 2159 6.663523 TCCGCATAAGACCTCATGAATATAGA 59.336 38.462 0.00 0.00 0.00 1.98
1876 2190 4.375908 CCAAACGAAAATTTTGCACGGATC 60.376 41.667 8.47 0.00 33.37 3.36
1894 2208 8.487313 ACATGTTAAAAAGAAAAGGTCCAAAC 57.513 30.769 0.00 0.00 0.00 2.93
1898 2212 7.979537 ACAAGACATGTTAAAAAGAAAAGGTCC 59.020 33.333 0.00 0.00 40.06 4.46
1902 2216 9.573133 AGTGACAAGACATGTTAAAAAGAAAAG 57.427 29.630 0.00 0.00 44.12 2.27
1908 2229 8.050778 ACTCAAGTGACAAGACATGTTAAAAA 57.949 30.769 0.00 0.00 44.12 1.94
1949 2270 2.548057 GGCTAGATCTCAGTCGAGTGAG 59.452 54.545 34.80 34.80 44.71 3.51
1950 2271 2.092914 TGGCTAGATCTCAGTCGAGTGA 60.093 50.000 21.32 21.32 40.44 3.41
1951 2272 2.032799 GTGGCTAGATCTCAGTCGAGTG 59.967 54.545 14.33 14.33 40.44 3.51
1952 2273 2.294074 GTGGCTAGATCTCAGTCGAGT 58.706 52.381 0.00 0.00 40.44 4.18
1953 2274 1.606668 GGTGGCTAGATCTCAGTCGAG 59.393 57.143 0.00 0.00 40.98 4.04
1954 2275 1.681538 GGTGGCTAGATCTCAGTCGA 58.318 55.000 0.00 0.00 0.00 4.20
1955 2276 0.671251 GGGTGGCTAGATCTCAGTCG 59.329 60.000 0.00 0.00 0.00 4.18
1958 2279 2.323599 TGATGGGTGGCTAGATCTCAG 58.676 52.381 0.00 0.00 0.00 3.35
2006 2329 5.877491 TCGCCGGATATCTATACCATATCT 58.123 41.667 5.05 0.00 34.73 1.98
2011 2334 3.361281 ACTCGCCGGATATCTATACCA 57.639 47.619 5.05 0.00 0.00 3.25
2095 2418 8.027524 AGAAAGAAGTAGGATTCAGATATGCA 57.972 34.615 0.00 0.00 0.00 3.96
2106 2429 7.873505 GTGACACACTTTAGAAAGAAGTAGGAT 59.126 37.037 8.97 0.00 39.31 3.24
2129 2452 1.336517 CGAGTTTAGAACTGGCGGTGA 60.337 52.381 0.00 0.00 43.03 4.02
2137 2460 0.108756 GCTCCGGCGAGTTTAGAACT 60.109 55.000 9.30 0.00 46.38 3.01
2140 2463 0.108804 CTTGCTCCGGCGAGTTTAGA 60.109 55.000 9.30 0.00 43.20 2.10
2168 2491 3.379865 TAGAATCGCCACGGGGTGC 62.380 63.158 13.91 0.00 44.64 5.01
2169 2492 1.520787 GTAGAATCGCCACGGGGTG 60.521 63.158 12.22 12.22 46.45 4.61
2170 2493 2.728435 GGTAGAATCGCCACGGGGT 61.728 63.158 5.12 0.00 36.17 4.95
2171 2494 2.108362 GGTAGAATCGCCACGGGG 59.892 66.667 0.00 0.00 37.18 5.73
2172 2495 2.279252 CGGTAGAATCGCCACGGG 60.279 66.667 0.00 0.00 0.00 5.28
2173 2496 2.279252 CCGGTAGAATCGCCACGG 60.279 66.667 0.00 0.00 35.01 4.94
2174 2497 2.279252 CCCGGTAGAATCGCCACG 60.279 66.667 0.00 0.00 0.00 4.94
2175 2498 2.588034 GCCCGGTAGAATCGCCAC 60.588 66.667 0.00 0.00 0.00 5.01
2176 2499 2.439960 ATGCCCGGTAGAATCGCCA 61.440 57.895 0.00 0.00 0.00 5.69
2177 2500 1.961277 CATGCCCGGTAGAATCGCC 60.961 63.158 0.00 0.00 0.00 5.54
2178 2501 2.607892 GCATGCCCGGTAGAATCGC 61.608 63.158 6.36 0.00 0.00 4.58
2179 2502 0.532862 AAGCATGCCCGGTAGAATCG 60.533 55.000 15.66 0.00 0.00 3.34
2180 2503 1.230324 GAAGCATGCCCGGTAGAATC 58.770 55.000 15.66 0.00 0.00 2.52
2181 2504 0.546122 TGAAGCATGCCCGGTAGAAT 59.454 50.000 15.66 0.00 0.00 2.40
2182 2505 0.326595 TTGAAGCATGCCCGGTAGAA 59.673 50.000 15.66 0.00 0.00 2.10
2183 2506 0.392461 GTTGAAGCATGCCCGGTAGA 60.392 55.000 15.66 0.00 0.00 2.59
2184 2507 0.676466 TGTTGAAGCATGCCCGGTAG 60.676 55.000 15.66 0.00 0.00 3.18
2185 2508 0.676466 CTGTTGAAGCATGCCCGGTA 60.676 55.000 15.66 0.00 0.00 4.02
2186 2509 1.973281 CTGTTGAAGCATGCCCGGT 60.973 57.895 15.66 0.00 0.00 5.28
2187 2510 2.703798 CCTGTTGAAGCATGCCCGG 61.704 63.158 15.66 0.00 0.00 5.73
2188 2511 2.879907 CCTGTTGAAGCATGCCCG 59.120 61.111 15.66 0.00 0.00 6.13
2189 2512 1.941999 GAGCCTGTTGAAGCATGCCC 61.942 60.000 15.66 7.45 31.74 5.36
2190 2513 1.246056 TGAGCCTGTTGAAGCATGCC 61.246 55.000 15.66 0.00 31.74 4.40
2191 2514 0.599558 TTGAGCCTGTTGAAGCATGC 59.400 50.000 10.51 10.51 0.00 4.06
2192 2515 1.402456 GCTTGAGCCTGTTGAAGCATG 60.402 52.381 0.00 0.00 40.47 4.06
2193 2516 0.886563 GCTTGAGCCTGTTGAAGCAT 59.113 50.000 0.00 0.00 40.47 3.79
2194 2517 2.334307 GCTTGAGCCTGTTGAAGCA 58.666 52.632 0.00 0.00 40.47 3.91
2205 2528 2.438075 CAGAGGGCAGGCTTGAGC 60.438 66.667 0.00 0.00 41.14 4.26
2206 2529 0.037303 TTTCAGAGGGCAGGCTTGAG 59.963 55.000 0.00 0.00 0.00 3.02
2207 2530 0.250901 GTTTCAGAGGGCAGGCTTGA 60.251 55.000 0.00 0.00 0.00 3.02
2208 2531 0.251077 AGTTTCAGAGGGCAGGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
2209 2532 0.251077 CAGTTTCAGAGGGCAGGCTT 60.251 55.000 0.00 0.00 0.00 4.35
2210 2533 1.130054 TCAGTTTCAGAGGGCAGGCT 61.130 55.000 0.00 0.00 0.00 4.58
2211 2534 0.250901 TTCAGTTTCAGAGGGCAGGC 60.251 55.000 0.00 0.00 0.00 4.85
2212 2535 2.276732 TTTCAGTTTCAGAGGGCAGG 57.723 50.000 0.00 0.00 0.00 4.85
2213 2536 3.548818 CGTTTTTCAGTTTCAGAGGGCAG 60.549 47.826 0.00 0.00 0.00 4.85
2214 2537 2.357637 CGTTTTTCAGTTTCAGAGGGCA 59.642 45.455 0.00 0.00 0.00 5.36
2215 2538 2.616842 TCGTTTTTCAGTTTCAGAGGGC 59.383 45.455 0.00 0.00 0.00 5.19
2216 2539 4.893424 TTCGTTTTTCAGTTTCAGAGGG 57.107 40.909 0.00 0.00 0.00 4.30
2217 2540 7.755582 AATTTTCGTTTTTCAGTTTCAGAGG 57.244 32.000 0.00 0.00 0.00 3.69
2219 2542 9.849166 AGTAAATTTTCGTTTTTCAGTTTCAGA 57.151 25.926 0.00 0.00 0.00 3.27
2234 2557 9.764870 GGGCTAAAAACTAGTAGTAAATTTTCG 57.235 33.333 12.36 9.04 0.00 3.46
2238 2561 9.749340 ACATGGGCTAAAAACTAGTAGTAAATT 57.251 29.630 2.50 2.23 0.00 1.82
2239 2562 9.392259 GACATGGGCTAAAAACTAGTAGTAAAT 57.608 33.333 2.50 0.00 0.00 1.40
2240 2563 8.377034 TGACATGGGCTAAAAACTAGTAGTAAA 58.623 33.333 2.50 0.00 0.00 2.01
2241 2564 7.909518 TGACATGGGCTAAAAACTAGTAGTAA 58.090 34.615 2.50 0.00 0.00 2.24
2242 2565 7.484993 TGACATGGGCTAAAAACTAGTAGTA 57.515 36.000 2.50 0.00 0.00 1.82
2243 2566 6.368779 TGACATGGGCTAAAAACTAGTAGT 57.631 37.500 0.00 0.00 0.00 2.73
2244 2567 5.294552 GCTGACATGGGCTAAAAACTAGTAG 59.705 44.000 0.00 0.00 0.00 2.57
2245 2568 5.183228 GCTGACATGGGCTAAAAACTAGTA 58.817 41.667 0.00 0.00 0.00 1.82
2246 2569 4.010349 GCTGACATGGGCTAAAAACTAGT 58.990 43.478 0.00 0.00 0.00 2.57
2247 2570 3.378427 GGCTGACATGGGCTAAAAACTAG 59.622 47.826 0.00 0.00 0.00 2.57
2248 2571 3.352648 GGCTGACATGGGCTAAAAACTA 58.647 45.455 0.00 0.00 0.00 2.24
2249 2572 2.171003 GGCTGACATGGGCTAAAAACT 58.829 47.619 0.00 0.00 0.00 2.66
2250 2573 1.204704 GGGCTGACATGGGCTAAAAAC 59.795 52.381 0.00 0.00 0.00 2.43
2251 2574 1.203112 TGGGCTGACATGGGCTAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
2252 2575 0.407528 TGGGCTGACATGGGCTAAAA 59.592 50.000 0.00 0.00 0.00 1.52
2253 2576 0.323360 GTGGGCTGACATGGGCTAAA 60.323 55.000 0.00 0.00 0.00 1.85
2254 2577 1.207488 AGTGGGCTGACATGGGCTAA 61.207 55.000 0.00 0.00 0.00 3.09
2255 2578 1.616327 AGTGGGCTGACATGGGCTA 60.616 57.895 0.00 0.00 0.00 3.93
2256 2579 2.937689 AGTGGGCTGACATGGGCT 60.938 61.111 0.00 0.00 0.00 5.19
2257 2580 2.753043 CAGTGGGCTGACATGGGC 60.753 66.667 0.00 0.00 45.28 5.36
2258 2581 1.377725 GACAGTGGGCTGACATGGG 60.378 63.158 0.00 0.00 45.28 4.00
2259 2582 0.904649 TAGACAGTGGGCTGACATGG 59.095 55.000 0.00 0.00 45.28 3.66
2260 2583 1.552337 ACTAGACAGTGGGCTGACATG 59.448 52.381 0.00 0.00 45.28 3.21
2261 2584 1.944177 ACTAGACAGTGGGCTGACAT 58.056 50.000 0.00 0.00 45.28 3.06
2262 2585 3.457560 ACTAGACAGTGGGCTGACA 57.542 52.632 0.00 0.00 45.28 3.58
2271 2594 5.511363 ACAATAGGCTAGACACTAGACAGT 58.489 41.667 13.14 4.49 34.42 3.55
2272 2595 6.458232 AACAATAGGCTAGACACTAGACAG 57.542 41.667 13.14 3.97 0.00 3.51
2273 2596 6.852420 AAACAATAGGCTAGACACTAGACA 57.148 37.500 13.14 1.54 0.00 3.41
2274 2597 7.769220 TGTAAACAATAGGCTAGACACTAGAC 58.231 38.462 0.00 6.75 0.00 2.59
2275 2598 7.949690 TGTAAACAATAGGCTAGACACTAGA 57.050 36.000 0.00 0.00 0.00 2.43
2276 2599 8.198109 ACATGTAAACAATAGGCTAGACACTAG 58.802 37.037 0.00 0.00 0.00 2.57
2277 2600 8.074613 ACATGTAAACAATAGGCTAGACACTA 57.925 34.615 0.00 0.00 0.00 2.74
2278 2601 6.947464 ACATGTAAACAATAGGCTAGACACT 58.053 36.000 0.00 0.00 0.00 3.55
2279 2602 7.549488 AGAACATGTAAACAATAGGCTAGACAC 59.451 37.037 0.00 0.00 0.00 3.67
2280 2603 7.620880 AGAACATGTAAACAATAGGCTAGACA 58.379 34.615 0.00 0.00 0.00 3.41
2281 2604 9.595823 TTAGAACATGTAAACAATAGGCTAGAC 57.404 33.333 0.00 0.00 0.00 2.59
2282 2605 9.595823 GTTAGAACATGTAAACAATAGGCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
2283 2606 8.827677 GGTTAGAACATGTAAACAATAGGCTAG 58.172 37.037 16.13 0.00 0.00 3.42
2284 2607 7.771826 GGGTTAGAACATGTAAACAATAGGCTA 59.228 37.037 16.13 0.00 0.00 3.93
2285 2608 6.602009 GGGTTAGAACATGTAAACAATAGGCT 59.398 38.462 16.13 0.00 0.00 4.58
2286 2609 6.602009 AGGGTTAGAACATGTAAACAATAGGC 59.398 38.462 16.13 3.10 0.00 3.93
2287 2610 8.458843 CAAGGGTTAGAACATGTAAACAATAGG 58.541 37.037 16.13 3.35 0.00 2.57
2288 2611 9.010029 ACAAGGGTTAGAACATGTAAACAATAG 57.990 33.333 16.13 8.65 0.00 1.73
2289 2612 8.927675 ACAAGGGTTAGAACATGTAAACAATA 57.072 30.769 16.13 0.00 0.00 1.90
2290 2613 7.833285 ACAAGGGTTAGAACATGTAAACAAT 57.167 32.000 16.13 5.52 0.00 2.71
2291 2614 8.927675 ATACAAGGGTTAGAACATGTAAACAA 57.072 30.769 16.13 1.01 32.07 2.83
2292 2615 8.788806 CAATACAAGGGTTAGAACATGTAAACA 58.211 33.333 16.13 0.00 32.07 2.83
2293 2616 9.005777 TCAATACAAGGGTTAGAACATGTAAAC 57.994 33.333 0.00 4.46 32.07 2.01
2294 2617 9.226606 CTCAATACAAGGGTTAGAACATGTAAA 57.773 33.333 0.00 0.00 32.07 2.01
2295 2618 8.598916 TCTCAATACAAGGGTTAGAACATGTAA 58.401 33.333 0.00 0.00 32.07 2.41
2296 2619 8.141298 TCTCAATACAAGGGTTAGAACATGTA 57.859 34.615 0.00 7.13 32.51 2.29
2297 2620 7.016153 TCTCAATACAAGGGTTAGAACATGT 57.984 36.000 0.00 0.00 0.00 3.21
2298 2621 7.607991 ACTTCTCAATACAAGGGTTAGAACATG 59.392 37.037 0.00 0.00 0.00 3.21
2299 2622 7.690256 ACTTCTCAATACAAGGGTTAGAACAT 58.310 34.615 0.00 0.00 0.00 2.71
2300 2623 7.074653 ACTTCTCAATACAAGGGTTAGAACA 57.925 36.000 0.00 0.00 0.00 3.18
2301 2624 7.660208 TCAACTTCTCAATACAAGGGTTAGAAC 59.340 37.037 0.00 0.00 0.00 3.01
2302 2625 7.741785 TCAACTTCTCAATACAAGGGTTAGAA 58.258 34.615 0.00 0.00 0.00 2.10
2303 2626 7.311092 TCAACTTCTCAATACAAGGGTTAGA 57.689 36.000 0.00 0.00 0.00 2.10
2304 2627 6.092807 GCTCAACTTCTCAATACAAGGGTTAG 59.907 42.308 0.00 0.00 0.00 2.34
2305 2628 5.938125 GCTCAACTTCTCAATACAAGGGTTA 59.062 40.000 0.00 0.00 0.00 2.85
2306 2629 4.762251 GCTCAACTTCTCAATACAAGGGTT 59.238 41.667 0.00 0.00 0.00 4.11
2307 2630 4.327680 GCTCAACTTCTCAATACAAGGGT 58.672 43.478 0.00 0.00 0.00 4.34
2308 2631 3.691609 GGCTCAACTTCTCAATACAAGGG 59.308 47.826 0.00 0.00 0.00 3.95
2309 2632 4.394300 CAGGCTCAACTTCTCAATACAAGG 59.606 45.833 0.00 0.00 0.00 3.61
2310 2633 4.142730 GCAGGCTCAACTTCTCAATACAAG 60.143 45.833 0.00 0.00 0.00 3.16
2311 2634 3.753272 GCAGGCTCAACTTCTCAATACAA 59.247 43.478 0.00 0.00 0.00 2.41
2312 2635 3.338249 GCAGGCTCAACTTCTCAATACA 58.662 45.455 0.00 0.00 0.00 2.29
2313 2636 2.680339 GGCAGGCTCAACTTCTCAATAC 59.320 50.000 0.00 0.00 0.00 1.89
2314 2637 2.356125 GGGCAGGCTCAACTTCTCAATA 60.356 50.000 0.00 0.00 0.00 1.90
2315 2638 1.615384 GGGCAGGCTCAACTTCTCAAT 60.615 52.381 0.00 0.00 0.00 2.57
2316 2639 0.250901 GGGCAGGCTCAACTTCTCAA 60.251 55.000 0.00 0.00 0.00 3.02
2317 2640 1.130054 AGGGCAGGCTCAACTTCTCA 61.130 55.000 0.00 0.00 0.00 3.27
2318 2641 0.037447 AAGGGCAGGCTCAACTTCTC 59.963 55.000 0.00 0.00 0.00 2.87
2319 2642 0.480252 AAAGGGCAGGCTCAACTTCT 59.520 50.000 0.00 0.00 0.00 2.85
2320 2643 2.200373 TAAAGGGCAGGCTCAACTTC 57.800 50.000 0.00 0.00 0.00 3.01
2321 2644 2.907458 ATAAAGGGCAGGCTCAACTT 57.093 45.000 0.00 0.00 0.00 2.66
2322 2645 2.907458 AATAAAGGGCAGGCTCAACT 57.093 45.000 0.00 0.00 0.00 3.16
2323 2646 3.258123 TGAAAATAAAGGGCAGGCTCAAC 59.742 43.478 0.00 0.00 0.00 3.18
2324 2647 3.505386 TGAAAATAAAGGGCAGGCTCAA 58.495 40.909 0.00 0.00 0.00 3.02
2325 2648 3.168035 TGAAAATAAAGGGCAGGCTCA 57.832 42.857 0.00 0.00 0.00 4.26
2326 2649 3.956848 AGATGAAAATAAAGGGCAGGCTC 59.043 43.478 0.00 0.00 0.00 4.70
2327 2650 3.986435 AGATGAAAATAAAGGGCAGGCT 58.014 40.909 0.00 0.00 0.00 4.58
2328 2651 5.594317 TCTTAGATGAAAATAAAGGGCAGGC 59.406 40.000 0.00 0.00 0.00 4.85
2329 2652 7.830099 ATCTTAGATGAAAATAAAGGGCAGG 57.170 36.000 0.00 0.00 0.00 4.85
2330 2653 8.072567 CGAATCTTAGATGAAAATAAAGGGCAG 58.927 37.037 0.00 0.00 0.00 4.85
2331 2654 7.556275 ACGAATCTTAGATGAAAATAAAGGGCA 59.444 33.333 0.00 0.00 0.00 5.36
2332 2655 7.931275 ACGAATCTTAGATGAAAATAAAGGGC 58.069 34.615 0.00 0.00 0.00 5.19
2333 2656 9.109393 TGACGAATCTTAGATGAAAATAAAGGG 57.891 33.333 0.00 0.00 0.00 3.95
2334 2657 9.922305 GTGACGAATCTTAGATGAAAATAAAGG 57.078 33.333 0.00 0.00 0.00 3.11
2337 2660 8.604035 GCAGTGACGAATCTTAGATGAAAATAA 58.396 33.333 0.00 0.00 0.00 1.40
2338 2661 7.763985 TGCAGTGACGAATCTTAGATGAAAATA 59.236 33.333 0.00 0.00 0.00 1.40
2339 2662 6.595326 TGCAGTGACGAATCTTAGATGAAAAT 59.405 34.615 0.00 0.00 0.00 1.82
2340 2663 5.931724 TGCAGTGACGAATCTTAGATGAAAA 59.068 36.000 0.00 0.00 0.00 2.29
2341 2664 5.478407 TGCAGTGACGAATCTTAGATGAAA 58.522 37.500 0.00 0.00 0.00 2.69
2342 2665 5.072040 TGCAGTGACGAATCTTAGATGAA 57.928 39.130 0.00 0.00 0.00 2.57
2343 2666 4.718940 TGCAGTGACGAATCTTAGATGA 57.281 40.909 0.00 0.00 0.00 2.92
2344 2667 4.318618 GCATGCAGTGACGAATCTTAGATG 60.319 45.833 14.21 0.00 0.00 2.90
2345 2668 3.806521 GCATGCAGTGACGAATCTTAGAT 59.193 43.478 14.21 0.00 0.00 1.98
2346 2669 3.190079 GCATGCAGTGACGAATCTTAGA 58.810 45.455 14.21 0.00 0.00 2.10
2347 2670 2.931969 TGCATGCAGTGACGAATCTTAG 59.068 45.455 18.46 0.00 0.00 2.18
2348 2671 2.672874 GTGCATGCAGTGACGAATCTTA 59.327 45.455 23.41 0.00 0.00 2.10
2349 2672 1.466167 GTGCATGCAGTGACGAATCTT 59.534 47.619 23.41 0.00 0.00 2.40
2350 2673 1.081892 GTGCATGCAGTGACGAATCT 58.918 50.000 23.41 0.00 0.00 2.40
2351 2674 0.097674 GGTGCATGCAGTGACGAATC 59.902 55.000 23.41 5.54 0.00 2.52
2352 2675 1.308069 GGGTGCATGCAGTGACGAAT 61.308 55.000 23.41 0.00 0.00 3.34
2353 2676 1.965930 GGGTGCATGCAGTGACGAA 60.966 57.895 23.41 0.00 0.00 3.85
2354 2677 2.358615 GGGTGCATGCAGTGACGA 60.359 61.111 23.41 0.00 0.00 4.20
2355 2678 3.792047 CGGGTGCATGCAGTGACG 61.792 66.667 23.41 18.54 0.00 4.35
2356 2679 2.669569 ACGGGTGCATGCAGTGAC 60.670 61.111 23.41 9.27 0.00 3.67
2357 2680 2.669229 CACGGGTGCATGCAGTGA 60.669 61.111 26.19 2.00 35.03 3.41
2358 2681 3.740397 CCACGGGTGCATGCAGTG 61.740 66.667 23.41 24.00 0.00 3.66
2362 2685 2.784889 AAATTGCCACGGGTGCATGC 62.785 55.000 11.82 11.82 38.76 4.06
2363 2686 1.015085 CAAATTGCCACGGGTGCATG 61.015 55.000 1.57 0.00 38.76 4.06
2364 2687 1.184322 TCAAATTGCCACGGGTGCAT 61.184 50.000 1.57 0.00 38.76 3.96
2448 2771 3.010138 TGAGGGTAAGAAATTCAGTGGGG 59.990 47.826 0.00 0.00 0.00 4.96
2452 2775 7.067494 GCACAATATGAGGGTAAGAAATTCAGT 59.933 37.037 0.00 0.00 0.00 3.41
2609 3006 2.536997 CTAGTGGGGAAACGCCAGGG 62.537 65.000 7.75 0.00 46.89 4.45
2617 3016 3.448301 CGTACCATACACTAGTGGGGAAA 59.552 47.826 27.23 16.43 39.86 3.13
2619 3018 2.241941 TCGTACCATACACTAGTGGGGA 59.758 50.000 27.23 15.23 39.86 4.81
2626 3025 3.480470 GCTAGGGTCGTACCATACACTA 58.520 50.000 6.41 1.10 41.02 2.74
2633 3032 2.042639 GGGGCTAGGGTCGTACCA 60.043 66.667 6.41 0.00 41.02 3.25
2680 6305 8.079809 GCATATCTGAGTCCTACTTCTTTCTAC 58.920 40.741 0.00 0.00 0.00 2.59
2762 6387 7.706179 CGTTTGCCAAATATGAGTAAAATCCAT 59.294 33.333 0.00 0.00 0.00 3.41
2780 6405 1.380403 CCCACAGTGAACGTTTGCCA 61.380 55.000 0.46 0.00 0.00 4.92
2781 6406 1.358759 CCCACAGTGAACGTTTGCC 59.641 57.895 0.46 0.00 0.00 4.52
2782 6407 2.103410 ACCCACAGTGAACGTTTGC 58.897 52.632 0.46 0.00 0.00 3.68
2792 6417 1.410517 CGCTGATATCTCACCCACAGT 59.589 52.381 3.98 0.00 0.00 3.55
2793 6418 1.683385 TCGCTGATATCTCACCCACAG 59.317 52.381 3.98 0.00 0.00 3.66
2794 6419 1.775385 TCGCTGATATCTCACCCACA 58.225 50.000 3.98 0.00 0.00 4.17
2795 6420 2.890808 TTCGCTGATATCTCACCCAC 57.109 50.000 3.98 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.