Multiple sequence alignment - TraesCS4A01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G348800 chr4A 100.000 4230 0 0 1 4230 626015281 626011052 0.000000e+00 7812.0
1 TraesCS4A01G348800 chr4A 90.813 1328 92 5 1587 2898 625995904 625994591 0.000000e+00 1749.0
2 TraesCS4A01G348800 chr4A 81.794 1906 298 27 976 2854 626049537 626047654 0.000000e+00 1552.0
3 TraesCS4A01G348800 chr4A 80.530 1926 313 35 1157 3038 626022318 626020411 0.000000e+00 1423.0
4 TraesCS4A01G348800 chr4A 82.242 1543 219 22 1377 2877 626074694 626073165 0.000000e+00 1280.0
5 TraesCS4A01G348800 chr5B 92.234 2601 140 24 955 3543 684622015 684624565 0.000000e+00 3627.0
6 TraesCS4A01G348800 chr5B 91.411 978 71 3 1566 2530 684690955 684691932 0.000000e+00 1328.0
7 TraesCS4A01G348800 chr5B 90.190 683 29 7 3581 4230 684624566 684625243 0.000000e+00 856.0
8 TraesCS4A01G348800 chr5B 83.042 973 109 22 1100 2072 684629089 684630005 0.000000e+00 832.0
9 TraesCS4A01G348800 chr5B 83.042 973 109 22 1100 2072 684642792 684643708 0.000000e+00 832.0
10 TraesCS4A01G348800 chr5B 82.536 962 88 40 18 955 684621139 684622044 0.000000e+00 773.0
11 TraesCS4A01G348800 chr5B 88.840 457 51 0 2519 2975 684693913 684694369 2.860000e-156 562.0
12 TraesCS4A01G348800 chr5B 81.831 688 97 22 1404 2079 684089275 684089946 1.720000e-153 553.0
13 TraesCS4A01G348800 chr5B 76.415 530 104 14 973 1493 684610622 684611139 2.510000e-67 267.0
14 TraesCS4A01G348800 chr5B 82.069 145 20 5 4092 4230 448455737 448455881 7.430000e-23 119.0
15 TraesCS4A01G348800 chr5B 82.500 120 10 5 594 708 684628480 684628593 1.250000e-15 95.3
16 TraesCS4A01G348800 chr5D 88.881 2959 221 51 645 3565 543229155 543232043 0.000000e+00 3542.0
17 TraesCS4A01G348800 chr5D 81.512 2077 324 39 973 3016 543213439 543215488 0.000000e+00 1653.0
18 TraesCS4A01G348800 chr5D 80.747 1927 311 30 1157 3039 543223516 543225426 0.000000e+00 1448.0
19 TraesCS4A01G348800 chr5D 82.207 1568 207 32 1368 2877 543092873 543094426 0.000000e+00 1284.0
20 TraesCS4A01G348800 chr5D 82.046 1515 224 32 1367 2854 543068385 543069878 0.000000e+00 1247.0
21 TraesCS4A01G348800 chr5D 90.450 911 86 1 2096 3005 543236728 543237638 0.000000e+00 1199.0
22 TraesCS4A01G348800 chr5D 83.275 1136 125 28 955 2072 543235541 543236629 0.000000e+00 985.0
23 TraesCS4A01G348800 chr5D 89.286 644 35 18 3557 4169 543232104 543232744 0.000000e+00 776.0
24 TraesCS4A01G348800 chr5D 80.664 693 99 26 1404 2079 542109497 542110171 4.880000e-139 505.0
25 TraesCS4A01G348800 chr5D 82.281 570 61 32 55 592 543228593 543229154 1.390000e-124 457.0
26 TraesCS4A01G348800 chr5D 82.639 144 18 5 4087 4225 362976484 362976625 2.070000e-23 121.0
27 TraesCS4A01G348800 chr5D 91.549 71 2 3 594 660 543235109 543235179 1.250000e-15 95.3
28 TraesCS4A01G348800 chr4D 78.977 704 71 33 429 1088 117419861 117419191 3.940000e-110 409.0
29 TraesCS4A01G348800 chr4D 79.860 571 66 24 429 955 151095222 151095787 5.170000e-99 372.0
30 TraesCS4A01G348800 chr2B 89.754 244 17 3 956 1198 585469191 585469427 5.310000e-79 305.0
31 TraesCS4A01G348800 chr2B 78.767 292 44 12 643 918 585468904 585469193 3.360000e-41 180.0
32 TraesCS4A01G348800 chr2B 80.451 133 23 3 4096 4226 384044469 384044600 9.680000e-17 99.0
33 TraesCS4A01G348800 chr2D 81.414 382 52 12 590 954 498401167 498401546 1.150000e-75 294.0
34 TraesCS4A01G348800 chr2D 86.066 244 25 4 955 1196 498401518 498401754 1.950000e-63 254.0
35 TraesCS4A01G348800 chr2D 82.394 142 18 4 4096 4230 526511656 526511797 2.670000e-22 117.0
36 TraesCS4A01G348800 chr6B 80.556 144 21 4 4094 4230 33971046 33970903 2.080000e-18 104.0
37 TraesCS4A01G348800 chr3B 80.435 138 21 3 4099 4230 85080973 85081110 2.690000e-17 100.0
38 TraesCS4A01G348800 chr2A 79.710 138 19 4 4100 4230 449228036 449227901 1.620000e-14 91.6
39 TraesCS4A01G348800 chr7D 79.104 134 19 6 4100 4226 133887555 133887424 2.710000e-12 84.2
40 TraesCS4A01G348800 chr3D 77.536 138 26 5 4095 4230 387309483 387309349 1.260000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G348800 chr4A 626011052 626015281 4229 True 7812.000000 7812 100.000000 1 4230 1 chr4A.!!$R2 4229
1 TraesCS4A01G348800 chr4A 625994591 625995904 1313 True 1749.000000 1749 90.813000 1587 2898 1 chr4A.!!$R1 1311
2 TraesCS4A01G348800 chr4A 626047654 626049537 1883 True 1552.000000 1552 81.794000 976 2854 1 chr4A.!!$R4 1878
3 TraesCS4A01G348800 chr4A 626020411 626022318 1907 True 1423.000000 1423 80.530000 1157 3038 1 chr4A.!!$R3 1881
4 TraesCS4A01G348800 chr4A 626073165 626074694 1529 True 1280.000000 1280 82.242000 1377 2877 1 chr4A.!!$R5 1500
5 TraesCS4A01G348800 chr5B 684621139 684630005 8866 False 1236.660000 3627 86.100400 18 4230 5 chr5B.!!$F5 4212
6 TraesCS4A01G348800 chr5B 684690955 684694369 3414 False 945.000000 1328 90.125500 1566 2975 2 chr5B.!!$F6 1409
7 TraesCS4A01G348800 chr5B 684642792 684643708 916 False 832.000000 832 83.042000 1100 2072 1 chr5B.!!$F4 972
8 TraesCS4A01G348800 chr5B 684089275 684089946 671 False 553.000000 553 81.831000 1404 2079 1 chr5B.!!$F2 675
9 TraesCS4A01G348800 chr5B 684610622 684611139 517 False 267.000000 267 76.415000 973 1493 1 chr5B.!!$F3 520
10 TraesCS4A01G348800 chr5D 543213439 543215488 2049 False 1653.000000 1653 81.512000 973 3016 1 chr5D.!!$F5 2043
11 TraesCS4A01G348800 chr5D 543092873 543094426 1553 False 1284.000000 1284 82.207000 1368 2877 1 chr5D.!!$F4 1509
12 TraesCS4A01G348800 chr5D 543068385 543069878 1493 False 1247.000000 1247 82.046000 1367 2854 1 chr5D.!!$F3 1487
13 TraesCS4A01G348800 chr5D 543223516 543237638 14122 False 1214.614286 3542 86.638429 55 4169 7 chr5D.!!$F6 4114
14 TraesCS4A01G348800 chr5D 542109497 542110171 674 False 505.000000 505 80.664000 1404 2079 1 chr5D.!!$F2 675
15 TraesCS4A01G348800 chr4D 117419191 117419861 670 True 409.000000 409 78.977000 429 1088 1 chr4D.!!$R1 659
16 TraesCS4A01G348800 chr4D 151095222 151095787 565 False 372.000000 372 79.860000 429 955 1 chr4D.!!$F1 526
17 TraesCS4A01G348800 chr2B 585468904 585469427 523 False 242.500000 305 84.260500 643 1198 2 chr2B.!!$F2 555
18 TraesCS4A01G348800 chr2D 498401167 498401754 587 False 274.000000 294 83.740000 590 1196 2 chr2D.!!$F2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.033011 ACGGGTCCTGATACAGAGCT 60.033 55.000 4.16 0.0 32.44 4.09 F
613 628 0.248621 GGGCTGCGGATTCAATTTCG 60.249 55.000 0.00 0.0 0.00 3.46 F
942 961 0.324943 CCGCTTCTTCTTTCCAGGGA 59.675 55.000 0.00 0.0 0.00 4.20 F
944 963 1.276421 CGCTTCTTCTTTCCAGGGAGA 59.724 52.381 0.00 0.0 0.00 3.71 F
1538 13941 1.305930 CCTGCGGGCTAGGTGTTTTC 61.306 60.000 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 13902 0.037590 ATGAAAACACCTAGCCCGCA 59.962 50.000 0.0 0.0 0.00 5.69 R
2022 14440 0.681887 TCGTCGGCCCTCAACATCTA 60.682 55.000 0.0 0.0 0.00 1.98 R
2680 17180 1.364721 CATCACCGTCGTTGCCATAA 58.635 50.000 0.0 0.0 0.00 1.90 R
2901 17530 1.607628 CCTGATTCTGCTGGCTAATGC 59.392 52.381 0.0 0.0 38.76 3.56 R
3460 18092 0.034616 TTTGCGGCTGGGGAAAAATG 59.965 50.000 0.0 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.102978 GATCGATTTGGGGTGGGTTG 58.897 55.000 0.00 0.00 0.00 3.77
37 38 0.930726 TTTGGGGTGGGTTGAGAGTT 59.069 50.000 0.00 0.00 0.00 3.01
38 39 1.822425 TTGGGGTGGGTTGAGAGTTA 58.178 50.000 0.00 0.00 0.00 2.24
61 62 1.323271 TTCTCGCGCTCCTCTCCATT 61.323 55.000 5.56 0.00 0.00 3.16
63 64 0.318275 CTCGCGCTCCTCTCCATTAC 60.318 60.000 5.56 0.00 0.00 1.89
69 70 2.093447 CGCTCCTCTCCATTACTTTGGT 60.093 50.000 0.00 0.00 38.01 3.67
70 71 3.132289 CGCTCCTCTCCATTACTTTGGTA 59.868 47.826 0.00 0.00 38.01 3.25
71 72 4.698575 GCTCCTCTCCATTACTTTGGTAG 58.301 47.826 0.00 0.00 38.01 3.18
72 73 4.406003 GCTCCTCTCCATTACTTTGGTAGA 59.594 45.833 0.00 0.00 38.01 2.59
81 82 8.506168 TCCATTACTTTGGTAGATTGATGAAC 57.494 34.615 0.00 0.00 38.01 3.18
104 105 2.688364 GTTGGAAACTTTCTCGCCTG 57.312 50.000 1.57 0.00 45.32 4.85
105 106 2.218603 GTTGGAAACTTTCTCGCCTGA 58.781 47.619 1.57 0.00 45.32 3.86
106 107 2.169832 TGGAAACTTTCTCGCCTGAG 57.830 50.000 1.57 0.00 43.99 3.35
107 108 1.270839 TGGAAACTTTCTCGCCTGAGG 60.271 52.381 0.00 0.00 42.79 3.86
123 124 4.054671 CCTGAGGCTGTCTTTAATCGATC 58.945 47.826 0.00 0.00 0.00 3.69
129 130 3.043586 CTGTCTTTAATCGATCCGACGG 58.956 50.000 7.84 7.84 39.18 4.79
134 135 0.179009 TAATCGATCCGACGGGTCCT 60.179 55.000 21.29 8.73 39.18 3.85
137 138 2.194212 CGATCCGACGGGTCCTGAT 61.194 63.158 21.29 2.09 33.83 2.90
138 139 0.887836 CGATCCGACGGGTCCTGATA 60.888 60.000 21.29 0.00 33.83 2.15
140 141 0.106369 ATCCGACGGGTCCTGATACA 60.106 55.000 15.25 0.00 33.83 2.29
143 144 0.663688 CGACGGGTCCTGATACAGAG 59.336 60.000 4.16 0.00 32.44 3.35
144 145 0.386113 GACGGGTCCTGATACAGAGC 59.614 60.000 4.16 0.00 32.44 4.09
145 146 0.033011 ACGGGTCCTGATACAGAGCT 60.033 55.000 4.16 0.00 32.44 4.09
146 147 0.387202 CGGGTCCTGATACAGAGCTG 59.613 60.000 0.00 0.00 32.44 4.24
220 228 5.590259 GGACACATCCATGCAGTTAAATACT 59.410 40.000 0.00 0.00 45.47 2.12
234 242 7.653767 AGTTAAATACTGCGCCTATGTTATC 57.346 36.000 4.18 0.00 35.19 1.75
271 279 1.298157 CCTGAAATCGCCGAGCAACA 61.298 55.000 0.00 0.00 0.00 3.33
294 302 5.399301 CACAAACAAATTTCGAGCGATTCTT 59.601 36.000 0.00 0.00 0.00 2.52
295 303 5.625311 ACAAACAAATTTCGAGCGATTCTTC 59.375 36.000 0.00 0.00 0.00 2.87
297 305 5.209944 ACAAATTTCGAGCGATTCTTCTC 57.790 39.130 0.00 0.00 0.00 2.87
345 353 4.745620 GGATTACTGATTTCGAGCACCTAC 59.254 45.833 0.00 0.00 0.00 3.18
354 363 1.134907 TCGAGCACCTACGGAAAATCC 60.135 52.381 0.00 0.00 0.00 3.01
373 384 3.654273 TCCTTACAGGATTAGGTGGAGG 58.346 50.000 0.00 0.00 40.06 4.30
385 396 6.101296 GGATTAGGTGGAGGATTAGGAGAAAA 59.899 42.308 0.00 0.00 0.00 2.29
386 397 7.202232 GGATTAGGTGGAGGATTAGGAGAAAAT 60.202 40.741 0.00 0.00 0.00 1.82
387 398 5.638530 AGGTGGAGGATTAGGAGAAAATC 57.361 43.478 0.00 0.00 33.44 2.17
388 399 5.039645 AGGTGGAGGATTAGGAGAAAATCA 58.960 41.667 0.00 0.00 35.46 2.57
389 400 5.131809 AGGTGGAGGATTAGGAGAAAATCAG 59.868 44.000 0.00 0.00 35.46 2.90
390 401 5.372373 GTGGAGGATTAGGAGAAAATCAGG 58.628 45.833 0.00 0.00 35.46 3.86
391 402 4.413520 TGGAGGATTAGGAGAAAATCAGGG 59.586 45.833 0.00 0.00 35.46 4.45
392 403 4.202514 GGAGGATTAGGAGAAAATCAGGGG 60.203 50.000 0.00 0.00 35.46 4.79
393 404 3.724209 AGGATTAGGAGAAAATCAGGGGG 59.276 47.826 0.00 0.00 35.46 5.40
394 405 3.491342 GATTAGGAGAAAATCAGGGGGC 58.509 50.000 0.00 0.00 34.21 5.80
399 410 1.827344 GAGAAAATCAGGGGGCTTTGG 59.173 52.381 0.00 0.00 0.00 3.28
400 411 1.149923 AGAAAATCAGGGGGCTTTGGT 59.850 47.619 0.00 0.00 0.00 3.67
401 412 1.550524 GAAAATCAGGGGGCTTTGGTC 59.449 52.381 0.00 0.00 0.00 4.02
402 413 0.611896 AAATCAGGGGGCTTTGGTCG 60.612 55.000 0.00 0.00 0.00 4.79
403 414 3.645268 ATCAGGGGGCTTTGGTCGC 62.645 63.158 0.00 0.00 0.00 5.19
404 415 4.351054 CAGGGGGCTTTGGTCGCT 62.351 66.667 0.00 0.00 0.00 4.93
405 416 3.580319 AGGGGGCTTTGGTCGCTT 61.580 61.111 0.00 0.00 0.00 4.68
406 417 2.228480 AGGGGGCTTTGGTCGCTTA 61.228 57.895 0.00 0.00 0.00 3.09
407 418 1.749258 GGGGGCTTTGGTCGCTTAG 60.749 63.158 0.00 0.00 0.00 2.18
408 419 1.298667 GGGGCTTTGGTCGCTTAGA 59.701 57.895 0.00 0.00 0.00 2.10
409 420 0.322187 GGGGCTTTGGTCGCTTAGAA 60.322 55.000 0.00 0.00 0.00 2.10
410 421 1.087501 GGGCTTTGGTCGCTTAGAAG 58.912 55.000 0.00 0.00 0.00 2.85
411 422 1.610886 GGGCTTTGGTCGCTTAGAAGT 60.611 52.381 0.00 0.00 0.00 3.01
412 423 2.152016 GGCTTTGGTCGCTTAGAAGTT 58.848 47.619 0.00 0.00 0.00 2.66
413 424 3.332034 GGCTTTGGTCGCTTAGAAGTTA 58.668 45.455 0.00 0.00 0.00 2.24
414 425 3.371285 GGCTTTGGTCGCTTAGAAGTTAG 59.629 47.826 0.00 0.00 0.00 2.34
415 426 4.243270 GCTTTGGTCGCTTAGAAGTTAGA 58.757 43.478 0.00 0.00 0.00 2.10
416 427 4.870991 GCTTTGGTCGCTTAGAAGTTAGAT 59.129 41.667 0.00 0.00 0.00 1.98
419 430 5.502153 TGGTCGCTTAGAAGTTAGATCTC 57.498 43.478 0.00 0.00 0.00 2.75
422 433 3.878103 TCGCTTAGAAGTTAGATCTCGCT 59.122 43.478 0.00 0.00 0.00 4.93
423 434 4.024725 TCGCTTAGAAGTTAGATCTCGCTC 60.025 45.833 0.00 0.00 0.00 5.03
426 437 5.220970 GCTTAGAAGTTAGATCTCGCTCTGT 60.221 44.000 0.00 0.00 0.00 3.41
427 438 4.893424 AGAAGTTAGATCTCGCTCTGTC 57.107 45.455 0.00 0.00 0.00 3.51
435 446 5.181690 AGATCTCGCTCTGTCTTTACATC 57.818 43.478 0.00 0.00 34.37 3.06
504 517 4.261741 CCTGTCCAAAGGAACACAAATCTG 60.262 45.833 0.00 0.00 40.02 2.90
543 558 7.720957 TGTTATAACTTGATGCTTATCCATGCT 59.279 33.333 16.33 0.00 0.00 3.79
548 563 5.597182 ACTTGATGCTTATCCATGCTGAAAT 59.403 36.000 0.00 0.00 0.00 2.17
573 588 2.280797 GCAAGTCACCGTCTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
575 590 1.069765 CAAGTCACCGTCTGCCAGT 59.930 57.895 0.00 0.00 0.00 4.00
592 607 3.355378 CCAGTGTTTCAGATTATGGGCA 58.645 45.455 0.00 0.00 0.00 5.36
594 609 4.202080 CCAGTGTTTCAGATTATGGGCATG 60.202 45.833 0.00 0.00 0.00 4.06
608 623 2.417257 GCATGGGCTGCGGATTCAA 61.417 57.895 0.00 0.00 41.97 2.69
613 628 0.248621 GGGCTGCGGATTCAATTTCG 60.249 55.000 0.00 0.00 0.00 3.46
628 643 9.226345 GATTCAATTTCGAGCCACTTAAATTAG 57.774 33.333 0.00 0.00 31.97 1.73
631 646 4.563140 TTCGAGCCACTTAAATTAGGGT 57.437 40.909 0.00 0.00 33.98 4.34
634 649 4.007659 CGAGCCACTTAAATTAGGGTTGT 58.992 43.478 0.00 0.00 30.92 3.32
637 652 5.580022 AGCCACTTAAATTAGGGTTGTGAT 58.420 37.500 0.00 0.00 0.00 3.06
654 669 1.130955 GATTGCTGTTGCCGTTGTTG 58.869 50.000 0.00 0.00 38.71 3.33
655 670 0.743688 ATTGCTGTTGCCGTTGTTGA 59.256 45.000 0.00 0.00 38.71 3.18
657 672 0.743688 TGCTGTTGCCGTTGTTGAAT 59.256 45.000 0.00 0.00 38.71 2.57
658 673 1.950216 TGCTGTTGCCGTTGTTGAATA 59.050 42.857 0.00 0.00 38.71 1.75
659 674 2.287308 TGCTGTTGCCGTTGTTGAATAC 60.287 45.455 0.00 0.00 38.71 1.89
660 675 2.287308 GCTGTTGCCGTTGTTGAATACA 60.287 45.455 0.00 0.00 34.12 2.29
661 676 3.554524 CTGTTGCCGTTGTTGAATACAG 58.445 45.455 0.00 0.00 38.19 2.74
662 677 2.946329 TGTTGCCGTTGTTGAATACAGT 59.054 40.909 0.00 0.00 38.19 3.55
663 678 3.378742 TGTTGCCGTTGTTGAATACAGTT 59.621 39.130 0.00 0.00 38.19 3.16
664 679 4.575236 TGTTGCCGTTGTTGAATACAGTTA 59.425 37.500 0.00 0.00 38.19 2.24
665 680 4.735662 TGCCGTTGTTGAATACAGTTAC 57.264 40.909 0.00 0.00 38.19 2.50
666 681 4.127907 TGCCGTTGTTGAATACAGTTACA 58.872 39.130 0.00 0.00 38.19 2.41
667 682 4.024725 TGCCGTTGTTGAATACAGTTACAC 60.025 41.667 0.00 0.00 38.19 2.90
668 683 4.212636 GCCGTTGTTGAATACAGTTACACT 59.787 41.667 0.00 0.00 38.19 3.55
701 716 5.336134 GGGTTAATTTTTATGTGTCGCAGGT 60.336 40.000 0.00 0.00 0.00 4.00
712 727 1.680735 TGTCGCAGGTTGCAAAGAATT 59.319 42.857 0.00 0.00 45.36 2.17
715 730 3.555547 GTCGCAGGTTGCAAAGAATTTTT 59.444 39.130 0.00 0.00 45.36 1.94
716 731 3.801594 TCGCAGGTTGCAAAGAATTTTTC 59.198 39.130 0.00 0.00 45.36 2.29
717 732 3.059665 CGCAGGTTGCAAAGAATTTTTCC 60.060 43.478 0.00 0.00 45.36 3.13
718 733 4.129380 GCAGGTTGCAAAGAATTTTTCCT 58.871 39.130 0.00 0.00 44.26 3.36
719 734 4.024641 GCAGGTTGCAAAGAATTTTTCCTG 60.025 41.667 17.95 17.95 44.26 3.86
721 736 4.129380 GGTTGCAAAGAATTTTTCCTGCT 58.871 39.130 0.00 0.00 35.03 4.24
723 738 5.066375 GGTTGCAAAGAATTTTTCCTGCTTT 59.934 36.000 0.00 0.00 35.03 3.51
724 739 5.989551 TGCAAAGAATTTTTCCTGCTTTC 57.010 34.783 6.86 0.00 35.03 2.62
725 740 5.426504 TGCAAAGAATTTTTCCTGCTTTCA 58.573 33.333 6.86 0.00 35.03 2.69
753 768 4.596311 TGCAGTGCAGATACACCG 57.404 55.556 15.37 0.00 41.67 4.94
764 783 0.528684 GATACACCGTCTGGAGCAGC 60.529 60.000 0.00 0.00 39.21 5.25
772 791 2.287909 CCGTCTGGAGCAGCTATCTTAC 60.288 54.545 0.00 0.00 37.49 2.34
782 801 3.493877 GCAGCTATCTTACATGACTGCTG 59.506 47.826 0.00 9.93 44.25 4.41
792 811 3.597255 ACATGACTGCTGTGATTCTCTG 58.403 45.455 0.00 0.00 0.00 3.35
813 832 2.806244 GTCCACCACACACATGAACTAC 59.194 50.000 0.00 0.00 0.00 2.73
839 858 3.368236 CGAGGTAGTAAGTTTCTGCTTGC 59.632 47.826 0.00 0.00 0.00 4.01
858 877 4.502105 TGCTCCTTAATCAATGCAGGTA 57.498 40.909 0.00 0.00 0.00 3.08
860 879 3.251972 GCTCCTTAATCAATGCAGGTAGC 59.748 47.826 0.00 0.00 45.96 3.58
886 905 2.969628 AGAAATCTACAGCCGAGGTG 57.030 50.000 2.17 2.17 37.06 4.00
887 906 1.134670 AGAAATCTACAGCCGAGGTGC 60.135 52.381 3.45 0.00 34.04 5.01
889 908 2.298158 AATCTACAGCCGAGGTGCCG 62.298 60.000 3.45 0.00 34.04 5.69
897 916 4.379243 CGAGGTGCCGGTCAAGCT 62.379 66.667 1.90 4.13 0.00 3.74
906 925 1.370414 CGGTCAAGCTTTGTTGGCG 60.370 57.895 0.00 0.00 32.50 5.69
937 956 2.481009 GCGCCGCTTCTTCTTTCC 59.519 61.111 0.00 0.00 0.00 3.13
942 961 0.324943 CCGCTTCTTCTTTCCAGGGA 59.675 55.000 0.00 0.00 0.00 4.20
944 963 1.276421 CGCTTCTTCTTTCCAGGGAGA 59.724 52.381 0.00 0.00 0.00 3.71
946 965 3.620966 CGCTTCTTCTTTCCAGGGAGATT 60.621 47.826 0.00 0.00 0.00 2.40
947 966 3.944650 GCTTCTTCTTTCCAGGGAGATTC 59.055 47.826 0.00 0.00 0.00 2.52
948 967 4.566488 GCTTCTTCTTTCCAGGGAGATTCA 60.566 45.833 0.00 0.00 0.00 2.57
949 968 5.753716 CTTCTTCTTTCCAGGGAGATTCAT 58.246 41.667 0.00 0.00 0.00 2.57
950 969 6.633583 GCTTCTTCTTTCCAGGGAGATTCATA 60.634 42.308 0.00 0.00 0.00 2.15
951 970 6.491714 TCTTCTTTCCAGGGAGATTCATAG 57.508 41.667 0.00 0.00 0.00 2.23
952 971 5.367937 TCTTCTTTCCAGGGAGATTCATAGG 59.632 44.000 0.00 0.00 0.00 2.57
953 972 4.895836 TCTTTCCAGGGAGATTCATAGGA 58.104 43.478 0.00 0.00 0.00 2.94
954 973 4.904251 TCTTTCCAGGGAGATTCATAGGAG 59.096 45.833 0.00 0.00 0.00 3.69
955 974 2.614259 TCCAGGGAGATTCATAGGAGC 58.386 52.381 0.00 0.00 0.00 4.70
956 975 2.180973 TCCAGGGAGATTCATAGGAGCT 59.819 50.000 0.00 0.00 0.00 4.09
957 976 2.978278 CCAGGGAGATTCATAGGAGCTT 59.022 50.000 0.00 0.00 0.00 3.74
958 977 3.007831 CCAGGGAGATTCATAGGAGCTTC 59.992 52.174 0.00 0.00 0.00 3.86
959 978 3.903090 CAGGGAGATTCATAGGAGCTTCT 59.097 47.826 0.00 0.00 0.00 2.85
960 979 4.347583 CAGGGAGATTCATAGGAGCTTCTT 59.652 45.833 0.00 0.00 0.00 2.52
961 980 4.592778 AGGGAGATTCATAGGAGCTTCTTC 59.407 45.833 0.00 0.00 0.00 2.87
962 981 4.592778 GGGAGATTCATAGGAGCTTCTTCT 59.407 45.833 0.00 0.00 0.00 2.85
963 982 5.071653 GGGAGATTCATAGGAGCTTCTTCTT 59.928 44.000 0.00 0.00 0.00 2.52
964 983 6.409120 GGGAGATTCATAGGAGCTTCTTCTTT 60.409 42.308 0.00 0.00 0.00 2.52
965 984 6.705825 GGAGATTCATAGGAGCTTCTTCTTTC 59.294 42.308 0.00 0.00 0.00 2.62
966 985 6.591001 AGATTCATAGGAGCTTCTTCTTTCC 58.409 40.000 0.00 0.00 0.00 3.13
967 986 5.762179 TTCATAGGAGCTTCTTCTTTCCA 57.238 39.130 0.00 0.00 32.02 3.53
968 987 5.350504 TCATAGGAGCTTCTTCTTTCCAG 57.649 43.478 0.00 0.00 32.02 3.86
969 988 4.163078 TCATAGGAGCTTCTTCTTTCCAGG 59.837 45.833 0.00 0.00 32.02 4.45
970 989 1.632920 AGGAGCTTCTTCTTTCCAGGG 59.367 52.381 0.00 0.00 32.02 4.45
971 990 1.630878 GGAGCTTCTTCTTTCCAGGGA 59.369 52.381 0.00 0.00 0.00 4.20
972 991 2.355615 GGAGCTTCTTCTTTCCAGGGAG 60.356 54.545 0.00 0.00 0.00 4.30
973 992 2.569404 GAGCTTCTTCTTTCCAGGGAGA 59.431 50.000 0.00 0.00 0.00 3.71
974 993 2.304470 AGCTTCTTCTTTCCAGGGAGAC 59.696 50.000 0.00 0.00 0.00 3.36
1005 1024 4.940046 AGTGATCCAGAAACAGTTATGCAG 59.060 41.667 0.00 0.00 0.00 4.41
1085 1111 5.105269 AGCTAGGAGTAGGTTGAGCTTTTAC 60.105 44.000 0.00 0.00 36.93 2.01
1119 1160 2.292103 TGGCTTGACAACTTTTGTGC 57.708 45.000 0.00 0.00 45.52 4.57
1139 1180 3.064207 GCGCACGGATGGATTCTTATTA 58.936 45.455 0.30 0.00 0.00 0.98
1176 1217 2.086610 ATTTCAAGTGCACCAAGGGT 57.913 45.000 14.63 0.00 35.62 4.34
1199 1240 4.029809 GGCCTGCCCTTGGTACGT 62.030 66.667 0.00 0.00 0.00 3.57
1306 1347 6.016777 CCTTTACAATCTATGGCATCAAGGTC 60.017 42.308 1.65 0.00 0.00 3.85
1323 1364 3.335579 AGGTCTTGATTACCAGTTTCGC 58.664 45.455 0.00 0.00 39.64 4.70
1330 1419 2.103537 TTACCAGTTTCGCTAAGGCC 57.896 50.000 0.00 0.00 34.44 5.19
1483 13864 4.506937 AGTTCACTACCTACGAGATCCT 57.493 45.455 0.00 0.00 0.00 3.24
1538 13941 1.305930 CCTGCGGGCTAGGTGTTTTC 61.306 60.000 0.00 0.00 0.00 2.29
2022 14440 3.193691 CGTCAAGTCCATGTTCCTACTCT 59.806 47.826 0.00 0.00 0.00 3.24
2047 14465 1.541310 TTGAGGGCCGACGACAGATT 61.541 55.000 0.00 0.00 0.00 2.40
2072 14490 4.832248 TGAGGCTTACATGTCAAAGGTAG 58.168 43.478 0.00 0.00 0.00 3.18
2124 14631 3.192212 GGCTTTCACCCTTTCTCAATGAG 59.808 47.826 3.38 3.38 0.00 2.90
2254 14761 1.755783 CAAGGCTTCCAGGGATGGC 60.756 63.158 16.91 16.91 42.44 4.40
2329 14836 4.669842 AGCGAGCGCAAGTCAGCA 62.670 61.111 17.68 0.00 44.88 4.41
2680 17180 2.032071 CGGGTCGGCCTTGTTTCT 59.968 61.111 5.77 0.00 34.45 2.52
2898 17527 3.843027 ACAGGACAAGAACCAGATGATCT 59.157 43.478 0.00 0.00 0.00 2.75
2901 17530 6.047870 CAGGACAAGAACCAGATGATCTTAG 58.952 44.000 0.00 0.00 32.38 2.18
2943 17575 1.668419 ACACCTTCACTCACTGTTGC 58.332 50.000 0.00 0.00 0.00 4.17
2962 17594 5.640783 TGTTGCTGAGATCACAAATCTAGTG 59.359 40.000 0.00 0.00 38.32 2.74
2965 17597 4.502282 GCTGAGATCACAAATCTAGTGTCG 59.498 45.833 0.00 0.00 38.16 4.35
2971 17603 5.447624 TCACAAATCTAGTGTCGACAGAA 57.552 39.130 20.73 9.11 38.16 3.02
2980 17612 3.448686 AGTGTCGACAGAAGAACAAGTG 58.551 45.455 20.73 0.00 0.00 3.16
3011 17643 1.171308 CAATTGTCAGCAGGACCAGG 58.829 55.000 0.00 0.00 46.38 4.45
3020 17652 1.283321 AGCAGGACCAGGGAAAATCTC 59.717 52.381 0.00 0.00 0.00 2.75
3162 17794 0.250513 GGTGAGCAGGTACAGGGAAG 59.749 60.000 0.00 0.00 0.00 3.46
3180 17812 1.153349 GCACCTTCTTCGCCCTAGG 60.153 63.158 0.06 0.06 0.00 3.02
3250 17882 6.924612 TGTAAGCACACGAAATGTAAAGAGTA 59.075 34.615 0.00 0.00 40.64 2.59
3296 17928 4.021894 TCTCCAGCTAGTGTTTCTCAAGTC 60.022 45.833 0.00 0.00 0.00 3.01
3351 17983 7.280356 AGTTTTACATACTGTGTTCTGAACCT 58.720 34.615 17.26 0.00 42.29 3.50
3387 18019 5.304101 TGTTTTGGGTCTAAAGCATGAATGT 59.696 36.000 0.00 0.00 0.00 2.71
3391 18023 2.099756 GGTCTAAAGCATGAATGTGCCC 59.900 50.000 0.00 0.00 46.19 5.36
3395 18027 1.575419 AAGCATGAATGTGCCCCAAT 58.425 45.000 0.00 0.00 46.19 3.16
3407 18039 3.392947 TGTGCCCCAATATTTCTATCGGA 59.607 43.478 0.00 0.00 0.00 4.55
3443 18075 3.633525 TGCTGTGAATGGGCAAAGATATC 59.366 43.478 0.00 0.00 32.79 1.63
3450 18082 6.865205 GTGAATGGGCAAAGATATCTAAATGC 59.135 38.462 21.22 21.22 32.71 3.56
3454 18086 6.985117 TGGGCAAAGATATCTAAATGCAATC 58.015 36.000 26.39 19.13 34.14 2.67
3469 18101 9.252962 CTAAATGCAATCTCATACATTTTTCCC 57.747 33.333 5.27 0.00 41.57 3.97
3470 18102 5.596836 TGCAATCTCATACATTTTTCCCC 57.403 39.130 0.00 0.00 0.00 4.81
3471 18103 5.022122 TGCAATCTCATACATTTTTCCCCA 58.978 37.500 0.00 0.00 0.00 4.96
3472 18104 5.127519 TGCAATCTCATACATTTTTCCCCAG 59.872 40.000 0.00 0.00 0.00 4.45
3473 18105 5.594926 CAATCTCATACATTTTTCCCCAGC 58.405 41.667 0.00 0.00 0.00 4.85
3474 18106 3.631250 TCTCATACATTTTTCCCCAGCC 58.369 45.455 0.00 0.00 0.00 4.85
3475 18107 2.358898 CTCATACATTTTTCCCCAGCCG 59.641 50.000 0.00 0.00 0.00 5.52
3476 18108 1.111277 ATACATTTTTCCCCAGCCGC 58.889 50.000 0.00 0.00 0.00 6.53
3477 18109 0.251386 TACATTTTTCCCCAGCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
3478 18110 1.118356 ACATTTTTCCCCAGCCGCAA 61.118 50.000 0.00 0.00 0.00 4.85
3479 18111 0.034616 CATTTTTCCCCAGCCGCAAA 59.965 50.000 0.00 0.00 0.00 3.68
3543 18175 2.756207 TGTGCGCCAGTGACTAACTATA 59.244 45.455 4.18 0.00 36.83 1.31
3544 18176 3.383505 TGTGCGCCAGTGACTAACTATAT 59.616 43.478 4.18 0.00 36.83 0.86
3545 18177 4.581409 TGTGCGCCAGTGACTAACTATATA 59.419 41.667 4.18 0.00 36.83 0.86
3546 18178 5.068067 TGTGCGCCAGTGACTAACTATATAA 59.932 40.000 4.18 0.00 36.83 0.98
3547 18179 5.629849 GTGCGCCAGTGACTAACTATATAAG 59.370 44.000 4.18 0.00 36.83 1.73
3548 18180 5.301045 TGCGCCAGTGACTAACTATATAAGT 59.699 40.000 4.18 0.00 41.49 2.24
3549 18181 5.857517 GCGCCAGTGACTAACTATATAAGTC 59.142 44.000 0.00 6.23 37.50 3.01
3550 18182 6.294065 GCGCCAGTGACTAACTATATAAGTCT 60.294 42.308 12.23 0.00 40.25 3.24
3551 18183 7.078851 CGCCAGTGACTAACTATATAAGTCTG 58.921 42.308 12.23 5.50 40.25 3.51
3552 18184 7.255173 CGCCAGTGACTAACTATATAAGTCTGT 60.255 40.741 12.23 3.71 40.25 3.41
3553 18185 9.064706 GCCAGTGACTAACTATATAAGTCTGTA 57.935 37.037 12.23 0.00 40.25 2.74
3567 18199 4.111375 AGTCTGTAACCTATTGTCTGCG 57.889 45.455 0.00 0.00 0.00 5.18
3568 18200 3.510360 AGTCTGTAACCTATTGTCTGCGT 59.490 43.478 0.00 0.00 0.00 5.24
3569 18201 3.612860 GTCTGTAACCTATTGTCTGCGTG 59.387 47.826 0.00 0.00 0.00 5.34
3570 18202 3.257375 TCTGTAACCTATTGTCTGCGTGT 59.743 43.478 0.00 0.00 0.00 4.49
3571 18203 4.460034 TCTGTAACCTATTGTCTGCGTGTA 59.540 41.667 0.00 0.00 0.00 2.90
3572 18204 5.047872 TCTGTAACCTATTGTCTGCGTGTAA 60.048 40.000 0.00 0.00 0.00 2.41
3573 18205 5.539979 TGTAACCTATTGTCTGCGTGTAAA 58.460 37.500 0.00 0.00 0.00 2.01
3574 18206 5.990386 TGTAACCTATTGTCTGCGTGTAAAA 59.010 36.000 0.00 0.00 0.00 1.52
3575 18207 6.482641 TGTAACCTATTGTCTGCGTGTAAAAA 59.517 34.615 0.00 0.00 0.00 1.94
3612 18244 7.054751 TCGTCTCTGATCCTCTATTTGTCTTA 58.945 38.462 0.00 0.00 0.00 2.10
3614 18246 8.356657 CGTCTCTGATCCTCTATTTGTCTTATT 58.643 37.037 0.00 0.00 0.00 1.40
3615 18247 9.691362 GTCTCTGATCCTCTATTTGTCTTATTC 57.309 37.037 0.00 0.00 0.00 1.75
3616 18248 9.426534 TCTCTGATCCTCTATTTGTCTTATTCA 57.573 33.333 0.00 0.00 0.00 2.57
3639 18271 7.838884 TCATTGGTTGCATTTGATTCTCAATA 58.161 30.769 0.00 0.00 36.11 1.90
3643 18275 8.014070 TGGTTGCATTTGATTCTCAATATCAT 57.986 30.769 0.00 0.00 36.11 2.45
3703 18335 1.881591 TTAACCCTCGACCAAAACCG 58.118 50.000 0.00 0.00 0.00 4.44
3725 18357 5.254842 CGCTTTCAAAACATGTTGGTTTTC 58.745 37.500 12.82 0.00 45.20 2.29
3757 18393 2.042831 CCCTCTCGACCGTAACCGT 61.043 63.158 0.00 0.00 0.00 4.83
3783 18419 5.494390 AACTTTCTACCCCGTGTAAGATT 57.506 39.130 0.00 0.00 0.00 2.40
3816 18452 3.809013 CGGGGGAGGGGTGAATGG 61.809 72.222 0.00 0.00 0.00 3.16
3827 18463 1.279846 GGGTGAATGGGAGGTTACGAA 59.720 52.381 0.00 0.00 0.00 3.85
3859 18495 5.048921 TCGAGAAAAACTAGCTCTTCGAAGA 60.049 40.000 25.57 25.57 0.00 2.87
3936 18572 7.814264 ATAACTTTAGCTTAGCATGCAATCT 57.186 32.000 21.98 14.45 0.00 2.40
3944 18580 4.036498 GCTTAGCATGCAATCTGAACTGAT 59.964 41.667 21.98 0.00 0.00 2.90
4020 18677 6.201044 CAGAAACACTTCAGTACGATGAAACT 59.799 38.462 0.00 0.00 38.66 2.66
4024 18681 7.582435 ACACTTCAGTACGATGAAACTTATG 57.418 36.000 0.00 0.00 38.66 1.90
4084 18749 4.615588 ACAAAGTCTTCAGAGAGGGAAG 57.384 45.455 0.00 0.00 42.42 3.46
4085 18750 3.326297 ACAAAGTCTTCAGAGAGGGAAGG 59.674 47.826 0.00 0.00 41.59 3.46
4144 18809 5.608449 TCTATTCATCTTCAGTCATGGCAG 58.392 41.667 0.00 0.00 0.00 4.85
4150 18815 3.664107 TCTTCAGTCATGGCAGTACAAC 58.336 45.455 0.00 0.00 0.00 3.32
4162 18827 4.142359 TGGCAGTACAACGAACACAAAAAT 60.142 37.500 0.00 0.00 0.00 1.82
4220 18885 1.878953 ACAAACACTGAAGGTAGCCG 58.121 50.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.324740 ACCCCAAATCGATCGACGGA 61.325 55.000 22.06 0.00 42.82 4.69
9 10 0.814010 CCCACCCCAAATCGATCGAC 60.814 60.000 22.06 0.00 0.00 4.20
10 11 1.268992 ACCCACCCCAAATCGATCGA 61.269 55.000 21.86 21.86 0.00 3.59
11 12 0.393808 AACCCACCCCAAATCGATCG 60.394 55.000 9.36 9.36 0.00 3.69
12 13 1.102978 CAACCCACCCCAAATCGATC 58.897 55.000 0.00 0.00 0.00 3.69
13 14 0.701731 TCAACCCACCCCAAATCGAT 59.298 50.000 0.00 0.00 0.00 3.59
14 15 0.037590 CTCAACCCACCCCAAATCGA 59.962 55.000 0.00 0.00 0.00 3.59
15 16 0.037590 TCTCAACCCACCCCAAATCG 59.962 55.000 0.00 0.00 0.00 3.34
16 17 1.075536 ACTCTCAACCCACCCCAAATC 59.924 52.381 0.00 0.00 0.00 2.17
31 32 3.040099 GAGCGCGAGAAATCTAACTCTC 58.960 50.000 12.10 0.00 35.69 3.20
37 38 1.604755 GAGAGGAGCGCGAGAAATCTA 59.395 52.381 12.10 0.00 0.00 1.98
38 39 0.383949 GAGAGGAGCGCGAGAAATCT 59.616 55.000 12.10 5.54 0.00 2.40
61 62 5.424757 CGGGTTCATCAATCTACCAAAGTA 58.575 41.667 0.00 0.00 32.20 2.24
63 64 3.627577 CCGGGTTCATCAATCTACCAAAG 59.372 47.826 0.00 0.00 32.20 2.77
69 70 2.841266 TCCAACCGGGTTCATCAATCTA 59.159 45.455 10.04 0.00 38.11 1.98
70 71 1.633432 TCCAACCGGGTTCATCAATCT 59.367 47.619 10.04 0.00 38.11 2.40
71 72 2.122783 TCCAACCGGGTTCATCAATC 57.877 50.000 10.04 0.00 38.11 2.67
72 73 2.560981 GTTTCCAACCGGGTTCATCAAT 59.439 45.455 10.04 0.00 38.11 2.57
81 82 0.872388 CGAGAAAGTTTCCAACCGGG 59.128 55.000 12.05 0.00 38.37 5.73
101 102 3.526931 TCGATTAAAGACAGCCTCAGG 57.473 47.619 0.00 0.00 0.00 3.86
102 103 4.054671 GGATCGATTAAAGACAGCCTCAG 58.945 47.826 0.00 0.00 0.00 3.35
103 104 3.490933 CGGATCGATTAAAGACAGCCTCA 60.491 47.826 0.00 0.00 0.00 3.86
104 105 3.053455 CGGATCGATTAAAGACAGCCTC 58.947 50.000 0.00 0.00 0.00 4.70
105 106 2.693591 TCGGATCGATTAAAGACAGCCT 59.306 45.455 0.00 0.00 0.00 4.58
106 107 2.795470 GTCGGATCGATTAAAGACAGCC 59.205 50.000 0.00 0.00 38.42 4.85
107 108 2.468040 CGTCGGATCGATTAAAGACAGC 59.532 50.000 17.31 0.00 38.42 4.40
110 111 2.223665 ACCCGTCGGATCGATTAAAGAC 60.224 50.000 14.39 6.42 38.42 3.01
123 124 0.750546 TCTGTATCAGGACCCGTCGG 60.751 60.000 3.60 3.60 31.51 4.79
129 130 0.755686 CCCAGCTCTGTATCAGGACC 59.244 60.000 0.00 0.00 31.51 4.46
134 135 0.911769 CCCAACCCAGCTCTGTATCA 59.088 55.000 0.00 0.00 0.00 2.15
137 138 2.066340 CACCCAACCCAGCTCTGTA 58.934 57.895 0.00 0.00 0.00 2.74
138 139 2.839098 CACCCAACCCAGCTCTGT 59.161 61.111 0.00 0.00 0.00 3.41
140 141 3.971702 GGCACCCAACCCAGCTCT 61.972 66.667 0.00 0.00 0.00 4.09
177 179 4.625781 GCTCTACTACGCCGGCCG 62.626 72.222 23.46 21.04 44.21 6.13
247 255 0.108615 CTCGGCGATTTCAGGTCTGT 60.109 55.000 11.27 0.00 0.00 3.41
271 279 5.108385 AGAATCGCTCGAAATTTGTTTGT 57.892 34.783 0.00 0.00 0.00 2.83
294 302 2.429767 CCTGCTGGAGATGGCGAGA 61.430 63.158 2.92 0.00 34.57 4.04
295 303 2.108566 CCTGCTGGAGATGGCGAG 59.891 66.667 2.92 0.00 34.57 5.03
297 305 1.762522 ATACCCTGCTGGAGATGGCG 61.763 60.000 11.88 0.00 38.00 5.69
298 306 0.250640 CATACCCTGCTGGAGATGGC 60.251 60.000 11.88 0.00 38.00 4.40
299 307 1.135094 ACATACCCTGCTGGAGATGG 58.865 55.000 20.33 5.35 36.14 3.51
301 309 2.828520 CGATACATACCCTGCTGGAGAT 59.171 50.000 11.88 0.76 38.00 2.75
302 310 2.239400 CGATACATACCCTGCTGGAGA 58.761 52.381 11.88 0.00 38.00 3.71
303 311 1.273606 CCGATACATACCCTGCTGGAG 59.726 57.143 11.88 3.93 38.00 3.86
304 312 1.133294 TCCGATACATACCCTGCTGGA 60.133 52.381 11.88 0.00 38.00 3.86
305 313 1.338107 TCCGATACATACCCTGCTGG 58.662 55.000 1.89 1.89 41.37 4.85
354 363 5.896073 AATCCTCCACCTAATCCTGTAAG 57.104 43.478 0.00 0.00 0.00 2.34
365 374 5.039645 TGATTTTCTCCTAATCCTCCACCT 58.960 41.667 0.00 0.00 32.29 4.00
370 381 4.202514 CCCCCTGATTTTCTCCTAATCCTC 60.203 50.000 0.00 0.00 32.29 3.71
373 384 3.139211 AGCCCCCTGATTTTCTCCTAATC 59.861 47.826 0.00 0.00 33.58 1.75
385 396 2.677228 CGACCAAAGCCCCCTGAT 59.323 61.111 0.00 0.00 0.00 2.90
386 397 4.344865 GCGACCAAAGCCCCCTGA 62.345 66.667 0.00 0.00 0.00 3.86
387 398 2.478335 TAAGCGACCAAAGCCCCCTG 62.478 60.000 0.00 0.00 34.64 4.45
388 399 2.198304 CTAAGCGACCAAAGCCCCCT 62.198 60.000 0.00 0.00 34.64 4.79
389 400 1.749258 CTAAGCGACCAAAGCCCCC 60.749 63.158 0.00 0.00 34.64 5.40
390 401 0.322187 TTCTAAGCGACCAAAGCCCC 60.322 55.000 0.00 0.00 34.64 5.80
391 402 1.087501 CTTCTAAGCGACCAAAGCCC 58.912 55.000 0.00 0.00 34.64 5.19
392 403 1.809684 ACTTCTAAGCGACCAAAGCC 58.190 50.000 0.00 0.00 34.64 4.35
393 404 4.243270 TCTAACTTCTAAGCGACCAAAGC 58.757 43.478 0.00 0.00 0.00 3.51
394 405 6.334202 AGATCTAACTTCTAAGCGACCAAAG 58.666 40.000 0.00 0.00 0.00 2.77
399 410 3.969981 GCGAGATCTAACTTCTAAGCGAC 59.030 47.826 0.00 0.00 0.00 5.19
400 411 3.878103 AGCGAGATCTAACTTCTAAGCGA 59.122 43.478 0.00 0.00 34.25 4.93
401 412 4.024387 AGAGCGAGATCTAACTTCTAAGCG 60.024 45.833 0.00 0.00 34.25 4.68
402 413 5.212194 CAGAGCGAGATCTAACTTCTAAGC 58.788 45.833 0.00 0.00 0.00 3.09
403 414 6.260050 AGACAGAGCGAGATCTAACTTCTAAG 59.740 42.308 0.00 0.00 0.00 2.18
404 415 6.116806 AGACAGAGCGAGATCTAACTTCTAA 58.883 40.000 0.00 0.00 0.00 2.10
405 416 5.676552 AGACAGAGCGAGATCTAACTTCTA 58.323 41.667 0.00 0.00 0.00 2.10
406 417 4.523083 AGACAGAGCGAGATCTAACTTCT 58.477 43.478 0.00 0.00 0.00 2.85
407 418 4.893424 AGACAGAGCGAGATCTAACTTC 57.107 45.455 0.00 0.00 0.00 3.01
408 419 5.652994 AAAGACAGAGCGAGATCTAACTT 57.347 39.130 0.00 0.00 0.00 2.66
409 420 5.648526 TGTAAAGACAGAGCGAGATCTAACT 59.351 40.000 0.00 0.00 0.00 2.24
410 421 5.881447 TGTAAAGACAGAGCGAGATCTAAC 58.119 41.667 0.00 0.00 0.00 2.34
411 422 6.318900 TGATGTAAAGACAGAGCGAGATCTAA 59.681 38.462 0.00 0.00 39.50 2.10
412 423 5.823045 TGATGTAAAGACAGAGCGAGATCTA 59.177 40.000 0.00 0.00 39.50 1.98
413 424 4.642437 TGATGTAAAGACAGAGCGAGATCT 59.358 41.667 0.00 0.00 39.50 2.75
414 425 4.926244 TGATGTAAAGACAGAGCGAGATC 58.074 43.478 0.00 0.00 39.50 2.75
415 426 4.991153 TGATGTAAAGACAGAGCGAGAT 57.009 40.909 0.00 0.00 39.50 2.75
416 427 4.399303 TCATGATGTAAAGACAGAGCGAGA 59.601 41.667 0.00 0.00 39.50 4.04
419 430 6.865205 TCATATCATGATGTAAAGACAGAGCG 59.135 38.462 18.72 0.00 39.50 5.03
435 446 9.207042 CGAATAAAGCGAAATCATCATATCATG 57.793 33.333 0.00 0.00 0.00 3.07
457 469 1.201429 ACCTCCTGAACCCAGCGAAT 61.201 55.000 0.00 0.00 39.07 3.34
523 538 4.529897 TCAGCATGGATAAGCATCAAGTT 58.470 39.130 0.00 0.00 36.16 2.66
531 546 4.049546 TGCAATTTCAGCATGGATAAGC 57.950 40.909 0.00 0.00 37.02 3.09
535 550 3.857052 CAGTTGCAATTTCAGCATGGAT 58.143 40.909 0.59 0.00 42.33 3.41
537 552 1.730064 GCAGTTGCAATTTCAGCATGG 59.270 47.619 0.59 0.00 42.33 3.66
573 588 3.956199 CCATGCCCATAATCTGAAACACT 59.044 43.478 0.00 0.00 0.00 3.55
575 590 3.298619 CCCATGCCCATAATCTGAAACA 58.701 45.455 0.00 0.00 0.00 2.83
592 607 1.410153 GAAATTGAATCCGCAGCCCAT 59.590 47.619 0.00 0.00 0.00 4.00
594 609 0.248621 CGAAATTGAATCCGCAGCCC 60.249 55.000 0.00 0.00 0.00 5.19
601 616 5.560966 TTAAGTGGCTCGAAATTGAATCC 57.439 39.130 0.00 0.00 0.00 3.01
608 623 5.506708 ACCCTAATTTAAGTGGCTCGAAAT 58.493 37.500 0.00 0.00 0.00 2.17
613 628 5.007682 TCACAACCCTAATTTAAGTGGCTC 58.992 41.667 0.00 0.00 0.00 4.70
628 643 0.319813 GGCAACAGCAATCACAACCC 60.320 55.000 0.00 0.00 0.00 4.11
631 646 0.743688 AACGGCAACAGCAATCACAA 59.256 45.000 0.00 0.00 0.00 3.33
634 649 0.743688 AACAACGGCAACAGCAATCA 59.256 45.000 0.00 0.00 0.00 2.57
637 652 0.528017 TTCAACAACGGCAACAGCAA 59.472 45.000 0.00 0.00 0.00 3.91
660 675 1.530013 CCCGGTCGGACAGTGTAACT 61.530 60.000 11.39 0.00 44.02 2.24
661 676 1.080298 CCCGGTCGGACAGTGTAAC 60.080 63.158 11.39 0.00 37.50 2.50
662 677 1.114722 AACCCGGTCGGACAGTGTAA 61.115 55.000 11.39 0.00 37.50 2.41
663 678 0.251121 TAACCCGGTCGGACAGTGTA 60.251 55.000 11.39 0.00 37.50 2.90
664 679 1.114722 TTAACCCGGTCGGACAGTGT 61.115 55.000 11.39 0.00 37.50 3.55
665 680 0.248289 ATTAACCCGGTCGGACAGTG 59.752 55.000 11.39 0.00 37.50 3.66
666 681 0.978907 AATTAACCCGGTCGGACAGT 59.021 50.000 11.39 1.23 37.50 3.55
667 682 2.103537 AAATTAACCCGGTCGGACAG 57.896 50.000 11.39 5.84 37.50 3.51
668 683 2.565046 AAAATTAACCCGGTCGGACA 57.435 45.000 11.39 0.00 37.50 4.02
669 684 4.395854 ACATAAAAATTAACCCGGTCGGAC 59.604 41.667 11.39 0.00 37.50 4.79
701 716 5.879223 TGAAAGCAGGAAAAATTCTTTGCAA 59.121 32.000 16.41 0.00 40.30 4.08
736 751 0.389817 GACGGTGTATCTGCACTGCA 60.390 55.000 3.11 3.11 46.62 4.41
737 752 0.108615 AGACGGTGTATCTGCACTGC 60.109 55.000 7.10 0.00 46.62 4.40
739 754 0.532573 CCAGACGGTGTATCTGCACT 59.467 55.000 0.00 0.00 41.97 4.40
740 755 0.530744 TCCAGACGGTGTATCTGCAC 59.469 55.000 0.00 0.00 41.97 4.57
741 756 0.817654 CTCCAGACGGTGTATCTGCA 59.182 55.000 0.00 0.00 41.97 4.41
742 757 0.528684 GCTCCAGACGGTGTATCTGC 60.529 60.000 0.00 0.00 41.97 4.26
743 758 0.817654 TGCTCCAGACGGTGTATCTG 59.182 55.000 0.00 0.00 42.79 2.90
744 759 1.107114 CTGCTCCAGACGGTGTATCT 58.893 55.000 0.00 0.00 32.44 1.98
745 760 0.528684 GCTGCTCCAGACGGTGTATC 60.529 60.000 0.00 0.00 32.44 2.24
746 761 0.972983 AGCTGCTCCAGACGGTGTAT 60.973 55.000 0.00 0.00 32.44 2.29
747 762 0.323087 TAGCTGCTCCAGACGGTGTA 60.323 55.000 4.91 0.00 32.44 2.90
748 763 0.972983 ATAGCTGCTCCAGACGGTGT 60.973 55.000 4.91 0.00 32.44 4.16
750 765 0.396417 AGATAGCTGCTCCAGACGGT 60.396 55.000 4.91 0.00 32.44 4.83
752 767 2.359214 TGTAAGATAGCTGCTCCAGACG 59.641 50.000 4.91 0.00 32.44 4.18
753 768 4.038522 TCATGTAAGATAGCTGCTCCAGAC 59.961 45.833 4.91 0.00 32.44 3.51
764 783 7.208777 AGAATCACAGCAGTCATGTAAGATAG 58.791 38.462 0.00 0.00 0.00 2.08
772 791 3.597255 ACAGAGAATCACAGCAGTCATG 58.403 45.455 0.00 0.00 37.82 3.07
782 801 2.224281 TGTGTGGTGGACAGAGAATCAC 60.224 50.000 0.00 0.00 37.82 3.06
792 811 1.967319 AGTTCATGTGTGTGGTGGAC 58.033 50.000 0.00 0.00 0.00 4.02
813 832 1.475682 AGAAACTTACTACCTCGGCCG 59.524 52.381 22.12 22.12 0.00 6.13
839 858 3.496130 CGCTACCTGCATTGATTAAGGAG 59.504 47.826 0.00 0.00 43.06 3.69
858 877 3.190874 GCTGTAGATTTCTAAGCACGCT 58.809 45.455 12.71 0.00 35.09 5.07
860 879 2.535984 CGGCTGTAGATTTCTAAGCACG 59.464 50.000 16.45 14.19 35.87 5.34
886 905 1.007387 CCAACAAAGCTTGACCGGC 60.007 57.895 0.00 0.00 0.00 6.13
887 906 1.007387 GCCAACAAAGCTTGACCGG 60.007 57.895 0.00 0.00 0.00 5.28
889 908 1.007387 CCGCCAACAAAGCTTGACC 60.007 57.895 0.00 0.00 0.00 4.02
897 916 2.755876 TGCACACCCGCCAACAAA 60.756 55.556 0.00 0.00 0.00 2.83
937 956 3.903090 AGAAGCTCCTATGAATCTCCCTG 59.097 47.826 0.00 0.00 0.00 4.45
942 961 6.157645 TGGAAAGAAGAAGCTCCTATGAATCT 59.842 38.462 0.00 0.00 0.00 2.40
944 963 6.319048 TGGAAAGAAGAAGCTCCTATGAAT 57.681 37.500 0.00 0.00 0.00 2.57
946 965 4.163078 CCTGGAAAGAAGAAGCTCCTATGA 59.837 45.833 0.00 0.00 0.00 2.15
947 966 4.450053 CCTGGAAAGAAGAAGCTCCTATG 58.550 47.826 0.00 0.00 0.00 2.23
948 967 3.457749 CCCTGGAAAGAAGAAGCTCCTAT 59.542 47.826 0.00 0.00 0.00 2.57
949 968 2.840651 CCCTGGAAAGAAGAAGCTCCTA 59.159 50.000 0.00 0.00 0.00 2.94
950 969 1.632920 CCCTGGAAAGAAGAAGCTCCT 59.367 52.381 0.00 0.00 0.00 3.69
951 970 1.630878 TCCCTGGAAAGAAGAAGCTCC 59.369 52.381 0.00 0.00 0.00 4.70
952 971 2.569404 TCTCCCTGGAAAGAAGAAGCTC 59.431 50.000 0.00 0.00 0.00 4.09
953 972 2.304470 GTCTCCCTGGAAAGAAGAAGCT 59.696 50.000 0.00 0.00 0.00 3.74
954 973 2.304470 AGTCTCCCTGGAAAGAAGAAGC 59.696 50.000 0.00 0.00 0.00 3.86
955 974 3.580458 TGAGTCTCCCTGGAAAGAAGAAG 59.420 47.826 0.00 0.00 0.00 2.85
956 975 3.587498 TGAGTCTCCCTGGAAAGAAGAA 58.413 45.455 0.00 0.00 0.00 2.52
957 976 3.260269 TGAGTCTCCCTGGAAAGAAGA 57.740 47.619 0.00 0.00 0.00 2.87
958 977 4.100808 CCTATGAGTCTCCCTGGAAAGAAG 59.899 50.000 0.00 0.00 0.00 2.85
959 978 4.033709 CCTATGAGTCTCCCTGGAAAGAA 58.966 47.826 0.00 0.00 0.00 2.52
960 979 3.272285 TCCTATGAGTCTCCCTGGAAAGA 59.728 47.826 0.00 0.00 0.00 2.52
961 980 3.640967 CTCCTATGAGTCTCCCTGGAAAG 59.359 52.174 0.00 0.00 33.70 2.62
962 981 3.647636 CTCCTATGAGTCTCCCTGGAAA 58.352 50.000 0.00 0.00 33.70 3.13
963 982 3.320610 CTCCTATGAGTCTCCCTGGAA 57.679 52.381 0.00 0.00 33.70 3.53
974 993 5.128499 ACTGTTTCTGGATCACTCCTATGAG 59.872 44.000 0.00 0.00 42.59 2.90
995 1014 6.750501 CCATTTGATGAAGTTCTGCATAACTG 59.249 38.462 17.21 3.72 39.62 3.16
1005 1024 6.441093 TGATGTAGCCATTTGATGAAGTTC 57.559 37.500 0.00 0.00 0.00 3.01
1119 1160 5.171476 AGATAATAAGAATCCATCCGTGCG 58.829 41.667 0.00 0.00 0.00 5.34
1139 1180 8.755977 ACTTGAAATTGAAATTCCTGCATAGAT 58.244 29.630 0.00 0.00 0.00 1.98
1189 1230 1.403780 GGTGCACTAGACGTACCAAGG 60.404 57.143 17.98 0.00 38.83 3.61
1198 1239 6.651975 ATTATGTAGTAGGGTGCACTAGAC 57.348 41.667 17.98 11.67 0.00 2.59
1199 1240 7.664731 GTCTATTATGTAGTAGGGTGCACTAGA 59.335 40.741 17.98 8.05 0.00 2.43
1306 1347 4.201822 GCCTTAGCGAAACTGGTAATCAAG 60.202 45.833 0.00 0.00 32.00 3.02
1323 1364 1.142748 CTCTCTGCCACGGCCTTAG 59.857 63.158 5.42 0.44 41.09 2.18
1330 1419 1.444553 GTCGGAACTCTCTGCCACG 60.445 63.158 0.00 0.00 0.00 4.94
1387 1476 0.179468 TGCCTAAATCCGTAGCCACC 59.821 55.000 0.00 0.00 0.00 4.61
1483 13864 4.202080 GGTAGTAATGCCATACTCACGTCA 60.202 45.833 2.11 0.00 37.34 4.35
1521 13902 0.037590 ATGAAAACACCTAGCCCGCA 59.962 50.000 0.00 0.00 0.00 5.69
2022 14440 0.681887 TCGTCGGCCCTCAACATCTA 60.682 55.000 0.00 0.00 0.00 1.98
2047 14465 4.202461 ACCTTTGACATGTAAGCCTCAAGA 60.202 41.667 0.00 0.00 0.00 3.02
2072 14490 5.051508 TCGATACCGCGAAAAATAAGTAAGC 60.052 40.000 8.23 0.00 37.35 3.09
2124 14631 5.390991 GCTTTACACACCTGCATAGAAGAAC 60.391 44.000 0.00 0.00 0.00 3.01
2329 14836 6.786461 TCTTCCTGGAATGATCAGATATCACT 59.214 38.462 10.03 0.00 34.36 3.41
2680 17180 1.364721 CATCACCGTCGTTGCCATAA 58.635 50.000 0.00 0.00 0.00 1.90
2734 17279 4.922206 TGTCCAATAATGCTTTCACCTCT 58.078 39.130 0.00 0.00 0.00 3.69
2898 17527 4.132336 CTGATTCTGCTGGCTAATGCTAA 58.868 43.478 0.00 0.00 39.59 3.09
2901 17530 1.607628 CCTGATTCTGCTGGCTAATGC 59.392 52.381 0.00 0.00 38.76 3.56
2943 17575 5.741510 GTCGACACTAGATTTGTGATCTCAG 59.258 44.000 11.55 0.00 38.65 3.35
2962 17594 3.093717 TCCACTTGTTCTTCTGTCGAC 57.906 47.619 9.11 9.11 0.00 4.20
2965 17597 5.486526 AGATCATCCACTTGTTCTTCTGTC 58.513 41.667 0.00 0.00 0.00 3.51
2971 17603 8.517878 CAATTGTTAAGATCATCCACTTGTTCT 58.482 33.333 0.00 0.00 0.00 3.01
2980 17612 6.441093 TGCTGACAATTGTTAAGATCATCC 57.559 37.500 20.53 3.69 0.00 3.51
3011 17643 3.261897 TCACCAGTGAGAGGAGATTTTCC 59.738 47.826 0.00 0.00 39.43 3.13
3020 17652 1.337635 GCTCTTGTCACCAGTGAGAGG 60.338 57.143 14.03 8.62 40.75 3.69
3162 17794 1.153349 CCTAGGGCGAAGAAGGTGC 60.153 63.158 0.00 0.00 0.00 5.01
3250 17882 2.097036 TCCAGACCGTACACATCGATT 58.903 47.619 0.00 0.00 0.00 3.34
3278 17910 4.586841 AGTCAGACTTGAGAAACACTAGCT 59.413 41.667 0.00 0.00 32.98 3.32
3279 17911 4.877282 AGTCAGACTTGAGAAACACTAGC 58.123 43.478 0.00 0.00 32.98 3.42
3296 17928 7.837202 TTAAAACACGTCCCATTATAGTCAG 57.163 36.000 0.00 0.00 0.00 3.51
3337 17969 4.881850 AGGTTTTACAGGTTCAGAACACAG 59.118 41.667 15.36 6.49 0.00 3.66
3339 17971 5.123936 AGAGGTTTTACAGGTTCAGAACAC 58.876 41.667 15.36 4.82 0.00 3.32
3387 18019 4.715534 TTCCGATAGAAATATTGGGGCA 57.284 40.909 2.41 0.00 39.76 5.36
3417 18049 0.388659 TTGCCCATTCACAGCAACAC 59.611 50.000 0.00 0.00 41.35 3.32
3443 18075 9.252962 GGGAAAAATGTATGAGATTGCATTTAG 57.747 33.333 0.00 0.00 39.65 1.85
3450 18082 5.452356 GGCTGGGGAAAAATGTATGAGATTG 60.452 44.000 0.00 0.00 0.00 2.67
3454 18086 2.358898 CGGCTGGGGAAAAATGTATGAG 59.641 50.000 0.00 0.00 0.00 2.90
3459 18091 1.118356 TTGCGGCTGGGGAAAAATGT 61.118 50.000 0.00 0.00 0.00 2.71
3460 18092 0.034616 TTTGCGGCTGGGGAAAAATG 59.965 50.000 0.00 0.00 0.00 2.32
3461 18093 0.761802 TTTTGCGGCTGGGGAAAAAT 59.238 45.000 0.00 0.00 34.85 1.82
3462 18094 0.179070 GTTTTGCGGCTGGGGAAAAA 60.179 50.000 0.00 0.00 38.63 1.94
3463 18095 1.330655 TGTTTTGCGGCTGGGGAAAA 61.331 50.000 0.00 0.00 35.30 2.29
3464 18096 1.118356 ATGTTTTGCGGCTGGGGAAA 61.118 50.000 0.00 0.00 0.00 3.13
3465 18097 1.118356 AATGTTTTGCGGCTGGGGAA 61.118 50.000 0.00 0.00 0.00 3.97
3466 18098 0.251386 TAATGTTTTGCGGCTGGGGA 60.251 50.000 0.00 0.00 0.00 4.81
3467 18099 0.823460 ATAATGTTTTGCGGCTGGGG 59.177 50.000 0.00 0.00 0.00 4.96
3468 18100 2.948979 TCTATAATGTTTTGCGGCTGGG 59.051 45.455 0.00 0.00 0.00 4.45
3469 18101 4.630894 TTCTATAATGTTTTGCGGCTGG 57.369 40.909 0.00 0.00 0.00 4.85
3470 18102 7.167468 GGTATTTTCTATAATGTTTTGCGGCTG 59.833 37.037 0.00 0.00 0.00 4.85
3471 18103 7.147983 TGGTATTTTCTATAATGTTTTGCGGCT 60.148 33.333 0.00 0.00 0.00 5.52
3472 18104 6.975772 TGGTATTTTCTATAATGTTTTGCGGC 59.024 34.615 0.00 0.00 0.00 6.53
3473 18105 9.528018 AATGGTATTTTCTATAATGTTTTGCGG 57.472 29.630 0.00 0.00 0.00 5.69
3479 18111 8.512138 GCGCCTAATGGTATTTTCTATAATGTT 58.488 33.333 0.00 0.00 35.27 2.71
3501 18133 4.216257 ACATGATACATTTATGGAAGCGCC 59.784 41.667 2.29 0.00 37.10 6.53
3543 18175 6.127423 ACGCAGACAATAGGTTACAGACTTAT 60.127 38.462 0.00 0.00 32.40 1.73
3544 18176 5.184479 ACGCAGACAATAGGTTACAGACTTA 59.816 40.000 0.00 0.00 0.00 2.24
3545 18177 4.021368 ACGCAGACAATAGGTTACAGACTT 60.021 41.667 0.00 0.00 0.00 3.01
3546 18178 3.510360 ACGCAGACAATAGGTTACAGACT 59.490 43.478 0.00 0.00 0.00 3.24
3547 18179 3.612860 CACGCAGACAATAGGTTACAGAC 59.387 47.826 0.00 0.00 0.00 3.51
3548 18180 3.257375 ACACGCAGACAATAGGTTACAGA 59.743 43.478 0.00 0.00 0.00 3.41
3549 18181 3.585862 ACACGCAGACAATAGGTTACAG 58.414 45.455 0.00 0.00 0.00 2.74
3550 18182 3.671008 ACACGCAGACAATAGGTTACA 57.329 42.857 0.00 0.00 0.00 2.41
3551 18183 6.470557 TTTTACACGCAGACAATAGGTTAC 57.529 37.500 0.00 0.00 0.00 2.50
3573 18205 6.531503 TCAGAGACGAGGTCATATCTTTTT 57.468 37.500 0.00 0.00 34.60 1.94
3574 18206 6.239176 GGATCAGAGACGAGGTCATATCTTTT 60.239 42.308 0.00 0.00 34.60 2.27
3575 18207 5.242838 GGATCAGAGACGAGGTCATATCTTT 59.757 44.000 0.00 0.00 34.60 2.52
3576 18208 4.764823 GGATCAGAGACGAGGTCATATCTT 59.235 45.833 0.00 0.00 34.60 2.40
3577 18209 4.042809 AGGATCAGAGACGAGGTCATATCT 59.957 45.833 0.00 0.00 34.60 1.98
3578 18210 4.331968 AGGATCAGAGACGAGGTCATATC 58.668 47.826 0.00 0.00 34.60 1.63
3579 18211 4.042809 AGAGGATCAGAGACGAGGTCATAT 59.957 45.833 0.00 0.00 37.82 1.78
3588 18220 5.766150 AGACAAATAGAGGATCAGAGACG 57.234 43.478 0.00 0.00 37.82 4.18
3612 18244 6.703319 TGAGAATCAAATGCAACCAATGAAT 58.297 32.000 0.00 0.00 45.97 2.57
3614 18246 5.725325 TGAGAATCAAATGCAACCAATGA 57.275 34.783 0.00 0.00 45.97 2.57
3643 18275 9.434275 TCAGGAGACTAATATGGACTTATTGAA 57.566 33.333 1.92 0.00 40.21 2.69
3647 18279 9.440761 AAGTTCAGGAGACTAATATGGACTTAT 57.559 33.333 0.00 0.00 40.21 1.73
3703 18335 5.163903 ACGAAAACCAACATGTTTTGAAAGC 60.164 36.000 8.77 0.00 45.72 3.51
3757 18393 3.564053 ACACGGGGTAGAAAGTTTCAA 57.436 42.857 17.65 0.00 0.00 2.69
3783 18419 2.356330 CCCCCGCTGGTTGATTAACTTA 60.356 50.000 0.00 0.00 36.99 2.24
3827 18463 7.382898 AGAGCTAGTTTTTCTCGAAGAATCTT 58.617 34.615 0.00 0.00 33.67 2.40
3917 18553 5.649395 AGTTCAGATTGCATGCTAAGCTAAA 59.351 36.000 20.33 9.15 0.00 1.85
3936 18572 7.269316 TGTACTGTTGTCTTTGTATCAGTTCA 58.731 34.615 0.00 0.00 37.35 3.18
3944 18580 5.831525 TCTCCTCTGTACTGTTGTCTTTGTA 59.168 40.000 0.00 0.00 0.00 2.41
4020 18677 6.708502 TGCTCAGTGCTTAGTTTTGTACATAA 59.291 34.615 0.00 0.00 43.37 1.90
4024 18681 5.418310 TTGCTCAGTGCTTAGTTTTGTAC 57.582 39.130 0.00 0.00 43.37 2.90
4101 18766 5.324832 AGATCAGAGGTTTTCCAGGAAAA 57.675 39.130 21.66 21.66 43.73 2.29
4105 18770 5.994250 TGAATAGATCAGAGGTTTTCCAGG 58.006 41.667 0.00 0.00 36.57 4.45
4106 18771 7.507829 AGATGAATAGATCAGAGGTTTTCCAG 58.492 38.462 0.00 0.00 42.53 3.86
4119 18784 6.228995 TGCCATGACTGAAGATGAATAGATC 58.771 40.000 0.00 0.00 0.00 2.75
4173 18838 9.298250 GTTGTTACTAGGTGATCTATGGATCTA 57.702 37.037 18.64 3.95 46.18 1.98
4193 18858 6.480981 GCTACCTTCAGTGTTTGTAGTTGTTA 59.519 38.462 13.35 0.00 33.20 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.