Multiple sequence alignment - TraesCS4A01G348400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G348400 chr4A 100.000 6017 0 0 1 6017 625834656 625828640 0.000000e+00 11112.0
1 TraesCS4A01G348400 chr4A 94.850 4388 167 21 852 5217 695974398 695978748 0.000000e+00 6796.0
2 TraesCS4A01G348400 chr4A 84.871 271 25 10 190 447 695971914 695972181 5.980000e-65 259.0
3 TraesCS4A01G348400 chr4A 90.833 120 9 2 439 556 695973639 695973758 6.240000e-35 159.0
4 TraesCS4A01G348400 chr5D 94.391 4386 169 26 887 5217 543404682 543409045 0.000000e+00 6665.0
5 TraesCS4A01G348400 chr5D 84.740 308 32 11 143 439 543384186 543384489 1.640000e-75 294.0
6 TraesCS4A01G348400 chr5D 84.649 228 22 7 2615 2838 542111712 542111494 1.310000e-51 215.0
7 TraesCS4A01G348400 chr5D 90.984 122 9 2 437 556 543404193 543404314 4.830000e-36 163.0
8 TraesCS4A01G348400 chr5B 95.178 4189 158 21 1059 5217 557247616 557251790 0.000000e+00 6577.0
9 TraesCS4A01G348400 chr5B 96.125 800 30 1 5218 6017 63252428 63251630 0.000000e+00 1304.0
10 TraesCS4A01G348400 chr5B 86.713 429 34 11 143 556 557246417 557246837 7.110000e-124 455.0
11 TraesCS4A01G348400 chr5B 75.403 248 43 9 569 807 580973988 580973750 2.970000e-18 104.0
12 TraesCS4A01G348400 chr5B 80.000 115 18 3 569 678 696589968 696590082 5.000000e-11 80.5
13 TraesCS4A01G348400 chr7B 97.007 802 23 1 5217 6017 145042141 145042942 0.000000e+00 1347.0
14 TraesCS4A01G348400 chr7B 85.859 99 10 2 569 664 618854120 618854023 1.070000e-17 102.0
15 TraesCS4A01G348400 chr3B 96.522 805 26 2 5215 6017 171120076 171120880 0.000000e+00 1330.0
16 TraesCS4A01G348400 chr3B 95.906 806 27 4 5213 6017 119078773 119077973 0.000000e+00 1301.0
17 TraesCS4A01G348400 chr3A 96.509 802 23 3 5217 6017 522043381 522044178 0.000000e+00 1321.0
18 TraesCS4A01G348400 chr5A 96.264 803 28 2 5215 6017 653660005 653659205 0.000000e+00 1315.0
19 TraesCS4A01G348400 chr5A 96.015 803 29 1 5215 6017 482426301 482427100 0.000000e+00 1303.0
20 TraesCS4A01G348400 chr5A 87.143 70 7 2 565 633 86669169 86669101 1.800000e-10 78.7
21 TraesCS4A01G348400 chr4B 95.911 807 30 3 5210 6015 28682353 28681549 0.000000e+00 1304.0
22 TraesCS4A01G348400 chr4B 75.610 246 46 7 569 807 652965559 652965797 6.380000e-20 110.0
23 TraesCS4A01G348400 chr2B 96.130 801 28 2 5217 6017 683096048 683096845 0.000000e+00 1304.0
24 TraesCS4A01G348400 chr2B 85.714 70 7 2 566 634 643099004 643099071 3.010000e-08 71.3
25 TraesCS4A01G348400 chr1B 87.500 96 8 2 572 663 33978826 33978731 2.290000e-19 108.0
26 TraesCS4A01G348400 chr7A 90.000 70 6 1 569 637 492660780 492660711 8.310000e-14 89.8
27 TraesCS4A01G348400 chr1D 88.406 69 8 0 569 637 224371596 224371528 3.860000e-12 84.2
28 TraesCS4A01G348400 chrUn 83.696 92 5 4 470 552 308870807 308870717 1.800000e-10 78.7
29 TraesCS4A01G348400 chrUn 83.696 92 5 4 470 552 308875809 308875899 1.800000e-10 78.7
30 TraesCS4A01G348400 chrUn 83.696 92 5 4 470 552 385764939 385765029 1.800000e-10 78.7
31 TraesCS4A01G348400 chrUn 83.696 92 5 4 470 552 385775802 385775712 1.800000e-10 78.7
32 TraesCS4A01G348400 chrUn 83.696 92 5 4 470 552 469805130 469805220 1.800000e-10 78.7
33 TraesCS4A01G348400 chr3D 85.294 68 5 4 490 552 253508361 253508428 1.400000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G348400 chr4A 625828640 625834656 6016 True 11112.000000 11112 100.000000 1 6017 1 chr4A.!!$R1 6016
1 TraesCS4A01G348400 chr4A 695971914 695978748 6834 False 2404.666667 6796 90.184667 190 5217 3 chr4A.!!$F1 5027
2 TraesCS4A01G348400 chr5D 543404193 543409045 4852 False 3414.000000 6665 92.687500 437 5217 2 chr5D.!!$F2 4780
3 TraesCS4A01G348400 chr5B 557246417 557251790 5373 False 3516.000000 6577 90.945500 143 5217 2 chr5B.!!$F2 5074
4 TraesCS4A01G348400 chr5B 63251630 63252428 798 True 1304.000000 1304 96.125000 5218 6017 1 chr5B.!!$R1 799
5 TraesCS4A01G348400 chr7B 145042141 145042942 801 False 1347.000000 1347 97.007000 5217 6017 1 chr7B.!!$F1 800
6 TraesCS4A01G348400 chr3B 171120076 171120880 804 False 1330.000000 1330 96.522000 5215 6017 1 chr3B.!!$F1 802
7 TraesCS4A01G348400 chr3B 119077973 119078773 800 True 1301.000000 1301 95.906000 5213 6017 1 chr3B.!!$R1 804
8 TraesCS4A01G348400 chr3A 522043381 522044178 797 False 1321.000000 1321 96.509000 5217 6017 1 chr3A.!!$F1 800
9 TraesCS4A01G348400 chr5A 653659205 653660005 800 True 1315.000000 1315 96.264000 5215 6017 1 chr5A.!!$R2 802
10 TraesCS4A01G348400 chr5A 482426301 482427100 799 False 1303.000000 1303 96.015000 5215 6017 1 chr5A.!!$F1 802
11 TraesCS4A01G348400 chr4B 28681549 28682353 804 True 1304.000000 1304 95.911000 5210 6015 1 chr4B.!!$R1 805
12 TraesCS4A01G348400 chr2B 683096048 683096845 797 False 1304.000000 1304 96.130000 5217 6017 1 chr2B.!!$F2 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 2721 0.100146 ACGATCGGACGGAGCTTAAC 59.900 55.000 20.98 0.0 37.61 2.01 F
1046 2929 0.314935 TCGCTTAAACCTCGTCCGTT 59.685 50.000 0.00 0.0 0.00 4.44 F
1650 3539 1.210967 ACGTTTTCCTGACCAACTCCA 59.789 47.619 0.00 0.0 0.00 3.86 F
2339 4228 1.277273 CTGAGGTGCTTCCAGATGACA 59.723 52.381 1.79 0.0 39.02 3.58 F
3089 4996 3.615224 AAATCGATTTGCCAAATGCCT 57.385 38.095 22.16 0.0 40.16 4.75 F
4046 5955 0.034767 CCAGAGCAGAAAGGATGGCA 60.035 55.000 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2324 4213 0.036732 TGGGTGTCATCTGGAAGCAC 59.963 55.000 0.00 0.0 0.00 4.40 R
2477 4366 0.100682 GAGCAGCACAGGCATTCATG 59.899 55.000 0.00 0.0 44.61 3.07 R
2552 4441 0.809636 CGCACACAGTGAACTGACCA 60.810 55.000 17.11 0.0 46.59 4.02 R
3274 5181 1.798813 GCGGTGTTACTTCAAGTCTGG 59.201 52.381 0.00 0.0 0.00 3.86 R
4828 6768 0.038251 CTTGGTGAGAGTGTAGCGCA 60.038 55.000 11.47 0.0 0.00 6.09 R
5790 7747 1.600023 TTTGCCAGAAGTTACCACGG 58.400 50.000 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.904287 TCCCTCAATTTTCACCGGTG 58.096 50.000 29.26 29.26 0.00 4.94
20 21 0.887933 CCCTCAATTTTCACCGGTGG 59.112 55.000 33.40 16.80 0.00 4.61
21 22 0.887933 CCTCAATTTTCACCGGTGGG 59.112 55.000 33.40 19.97 40.11 4.61
22 23 0.243636 CTCAATTTTCACCGGTGGGC 59.756 55.000 33.40 0.00 36.48 5.36
23 24 0.178975 TCAATTTTCACCGGTGGGCT 60.179 50.000 33.40 13.75 36.48 5.19
24 25 0.243636 CAATTTTCACCGGTGGGCTC 59.756 55.000 33.40 0.00 36.48 4.70
25 26 1.241315 AATTTTCACCGGTGGGCTCG 61.241 55.000 33.40 7.98 36.48 5.03
33 34 4.021925 GGTGGGCTCGCCTCACTT 62.022 66.667 9.58 0.00 40.31 3.16
34 35 2.743928 GTGGGCTCGCCTCACTTG 60.744 66.667 17.00 0.00 35.69 3.16
35 36 2.922503 TGGGCTCGCCTCACTTGA 60.923 61.111 8.00 0.00 36.10 3.02
36 37 2.435059 GGGCTCGCCTCACTTGAC 60.435 66.667 8.00 0.00 36.10 3.18
37 38 2.435059 GGCTCGCCTCACTTGACC 60.435 66.667 0.00 0.00 0.00 4.02
38 39 2.343758 GCTCGCCTCACTTGACCA 59.656 61.111 0.00 0.00 0.00 4.02
39 40 1.301716 GCTCGCCTCACTTGACCAA 60.302 57.895 0.00 0.00 0.00 3.67
40 41 0.884704 GCTCGCCTCACTTGACCAAA 60.885 55.000 0.00 0.00 0.00 3.28
41 42 1.813513 CTCGCCTCACTTGACCAAAT 58.186 50.000 0.00 0.00 0.00 2.32
42 43 1.734465 CTCGCCTCACTTGACCAAATC 59.266 52.381 0.00 0.00 0.00 2.17
43 44 1.347707 TCGCCTCACTTGACCAAATCT 59.652 47.619 0.00 0.00 0.00 2.40
44 45 1.734465 CGCCTCACTTGACCAAATCTC 59.266 52.381 0.00 0.00 0.00 2.75
45 46 2.783135 GCCTCACTTGACCAAATCTCA 58.217 47.619 0.00 0.00 0.00 3.27
46 47 2.746362 GCCTCACTTGACCAAATCTCAG 59.254 50.000 0.00 0.00 0.00 3.35
47 48 2.746362 CCTCACTTGACCAAATCTCAGC 59.254 50.000 0.00 0.00 0.00 4.26
48 49 2.746362 CTCACTTGACCAAATCTCAGCC 59.254 50.000 0.00 0.00 0.00 4.85
49 50 2.106338 TCACTTGACCAAATCTCAGCCA 59.894 45.455 0.00 0.00 0.00 4.75
50 51 2.886523 CACTTGACCAAATCTCAGCCAA 59.113 45.455 0.00 0.00 0.00 4.52
51 52 3.508793 CACTTGACCAAATCTCAGCCAAT 59.491 43.478 0.00 0.00 0.00 3.16
52 53 3.760684 ACTTGACCAAATCTCAGCCAATC 59.239 43.478 0.00 0.00 0.00 2.67
53 54 3.438216 TGACCAAATCTCAGCCAATCA 57.562 42.857 0.00 0.00 0.00 2.57
54 55 3.349927 TGACCAAATCTCAGCCAATCAG 58.650 45.455 0.00 0.00 0.00 2.90
55 56 2.097825 ACCAAATCTCAGCCAATCAGC 58.902 47.619 0.00 0.00 0.00 4.26
56 57 2.291411 ACCAAATCTCAGCCAATCAGCT 60.291 45.455 0.00 0.00 46.45 4.24
57 58 2.358267 CCAAATCTCAGCCAATCAGCTC 59.642 50.000 0.00 0.00 42.61 4.09
58 59 3.280295 CAAATCTCAGCCAATCAGCTCT 58.720 45.455 0.00 0.00 42.61 4.09
59 60 4.449131 CAAATCTCAGCCAATCAGCTCTA 58.551 43.478 0.00 0.00 42.61 2.43
60 61 4.767578 AATCTCAGCCAATCAGCTCTAA 57.232 40.909 0.00 0.00 42.61 2.10
61 62 3.533606 TCTCAGCCAATCAGCTCTAAC 57.466 47.619 0.00 0.00 42.61 2.34
62 63 2.169352 TCTCAGCCAATCAGCTCTAACC 59.831 50.000 0.00 0.00 42.61 2.85
63 64 1.908619 TCAGCCAATCAGCTCTAACCA 59.091 47.619 0.00 0.00 42.61 3.67
64 65 2.012673 CAGCCAATCAGCTCTAACCAC 58.987 52.381 0.00 0.00 42.61 4.16
65 66 1.009829 GCCAATCAGCTCTAACCACG 58.990 55.000 0.00 0.00 0.00 4.94
66 67 1.676014 GCCAATCAGCTCTAACCACGT 60.676 52.381 0.00 0.00 0.00 4.49
67 68 2.271800 CCAATCAGCTCTAACCACGTC 58.728 52.381 0.00 0.00 0.00 4.34
68 69 1.920574 CAATCAGCTCTAACCACGTCG 59.079 52.381 0.00 0.00 0.00 5.12
69 70 1.174783 ATCAGCTCTAACCACGTCGT 58.825 50.000 0.00 0.00 0.00 4.34
70 71 0.520404 TCAGCTCTAACCACGTCGTC 59.480 55.000 0.00 0.00 0.00 4.20
71 72 0.240145 CAGCTCTAACCACGTCGTCA 59.760 55.000 0.00 0.00 0.00 4.35
72 73 0.956633 AGCTCTAACCACGTCGTCAA 59.043 50.000 0.00 0.00 0.00 3.18
73 74 1.544691 AGCTCTAACCACGTCGTCAAT 59.455 47.619 0.00 0.00 0.00 2.57
74 75 1.918609 GCTCTAACCACGTCGTCAATC 59.081 52.381 0.00 0.00 0.00 2.67
75 76 2.527100 CTCTAACCACGTCGTCAATCC 58.473 52.381 0.00 0.00 0.00 3.01
76 77 1.203052 TCTAACCACGTCGTCAATCCC 59.797 52.381 0.00 0.00 0.00 3.85
77 78 0.247185 TAACCACGTCGTCAATCCCC 59.753 55.000 0.00 0.00 0.00 4.81
78 79 2.125269 CCACGTCGTCAATCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
79 80 2.508439 CACGTCGTCAATCCCCCG 60.508 66.667 0.00 0.00 0.00 5.73
80 81 2.993264 ACGTCGTCAATCCCCCGT 60.993 61.111 0.00 0.00 0.00 5.28
81 82 1.678635 ACGTCGTCAATCCCCCGTA 60.679 57.895 0.00 0.00 0.00 4.02
82 83 1.250154 ACGTCGTCAATCCCCCGTAA 61.250 55.000 0.00 0.00 0.00 3.18
83 84 0.108709 CGTCGTCAATCCCCCGTAAA 60.109 55.000 0.00 0.00 0.00 2.01
84 85 1.362768 GTCGTCAATCCCCCGTAAAC 58.637 55.000 0.00 0.00 0.00 2.01
85 86 1.066645 GTCGTCAATCCCCCGTAAACT 60.067 52.381 0.00 0.00 0.00 2.66
86 87 1.066716 TCGTCAATCCCCCGTAAACTG 60.067 52.381 0.00 0.00 0.00 3.16
87 88 1.092348 GTCAATCCCCCGTAAACTGC 58.908 55.000 0.00 0.00 0.00 4.40
88 89 0.391927 TCAATCCCCCGTAAACTGCG 60.392 55.000 0.00 0.00 0.00 5.18
89 90 0.675522 CAATCCCCCGTAAACTGCGT 60.676 55.000 0.00 0.00 0.00 5.24
90 91 0.675522 AATCCCCCGTAAACTGCGTG 60.676 55.000 0.00 0.00 0.00 5.34
91 92 1.833787 ATCCCCCGTAAACTGCGTGT 61.834 55.000 0.00 0.00 0.00 4.49
92 93 2.322081 CCCCCGTAAACTGCGTGTG 61.322 63.158 0.00 0.00 0.00 3.82
93 94 1.301087 CCCCGTAAACTGCGTGTGA 60.301 57.895 0.00 0.00 0.00 3.58
94 95 1.289109 CCCCGTAAACTGCGTGTGAG 61.289 60.000 0.00 0.00 0.00 3.51
95 96 0.599204 CCCGTAAACTGCGTGTGAGT 60.599 55.000 0.00 0.00 0.00 3.41
96 97 0.782384 CCGTAAACTGCGTGTGAGTC 59.218 55.000 0.00 0.00 0.00 3.36
97 98 0.782384 CGTAAACTGCGTGTGAGTCC 59.218 55.000 0.00 0.00 0.00 3.85
98 99 1.860676 GTAAACTGCGTGTGAGTCCA 58.139 50.000 0.00 0.00 0.00 4.02
99 100 1.792949 GTAAACTGCGTGTGAGTCCAG 59.207 52.381 0.00 0.00 0.00 3.86
100 101 1.160329 AAACTGCGTGTGAGTCCAGC 61.160 55.000 0.00 0.00 0.00 4.85
101 102 2.029518 CTGCGTGTGAGTCCAGCA 59.970 61.111 0.00 0.00 36.34 4.41
102 103 1.375140 CTGCGTGTGAGTCCAGCAT 60.375 57.895 0.00 0.00 37.20 3.79
103 104 0.952497 CTGCGTGTGAGTCCAGCATT 60.952 55.000 0.00 0.00 37.20 3.56
104 105 1.229975 TGCGTGTGAGTCCAGCATTG 61.230 55.000 0.00 0.00 32.43 2.82
105 106 1.499056 CGTGTGAGTCCAGCATTGC 59.501 57.895 0.00 0.00 0.00 3.56
106 107 0.952497 CGTGTGAGTCCAGCATTGCT 60.952 55.000 5.03 5.03 40.77 3.91
107 108 0.801251 GTGTGAGTCCAGCATTGCTC 59.199 55.000 8.54 0.00 36.40 4.26
108 109 0.321919 TGTGAGTCCAGCATTGCTCC 60.322 55.000 8.54 0.00 36.40 4.70
109 110 1.078918 TGAGTCCAGCATTGCTCCG 60.079 57.895 8.54 1.89 36.40 4.63
110 111 1.078848 GAGTCCAGCATTGCTCCGT 60.079 57.895 8.54 0.00 36.40 4.69
111 112 0.674895 GAGTCCAGCATTGCTCCGTT 60.675 55.000 8.54 0.00 36.40 4.44
112 113 0.674895 AGTCCAGCATTGCTCCGTTC 60.675 55.000 8.54 0.00 36.40 3.95
113 114 1.741401 TCCAGCATTGCTCCGTTCG 60.741 57.895 8.54 0.00 36.40 3.95
114 115 2.753966 CCAGCATTGCTCCGTTCGG 61.754 63.158 8.54 4.74 36.40 4.30
115 116 2.436646 AGCATTGCTCCGTTCGGG 60.437 61.111 5.03 3.71 30.62 5.14
116 117 3.508840 GCATTGCTCCGTTCGGGG 61.509 66.667 11.37 9.17 36.01 5.73
122 123 2.975536 CTCCGTTCGGGGCTACAA 59.024 61.111 11.37 0.00 36.01 2.41
123 124 1.447314 CTCCGTTCGGGGCTACAAC 60.447 63.158 11.37 0.00 36.01 3.32
124 125 2.435410 CCGTTCGGGGCTACAACC 60.435 66.667 3.04 0.00 0.00 3.77
133 134 3.562397 GGCTACAACCCAATTCCGA 57.438 52.632 0.00 0.00 0.00 4.55
134 135 1.379527 GGCTACAACCCAATTCCGAG 58.620 55.000 0.00 0.00 0.00 4.63
135 136 0.733150 GCTACAACCCAATTCCGAGC 59.267 55.000 0.00 0.00 0.00 5.03
136 137 1.948611 GCTACAACCCAATTCCGAGCA 60.949 52.381 0.00 0.00 0.00 4.26
137 138 2.432444 CTACAACCCAATTCCGAGCAA 58.568 47.619 0.00 0.00 0.00 3.91
138 139 1.698506 ACAACCCAATTCCGAGCAAA 58.301 45.000 0.00 0.00 0.00 3.68
139 140 1.339929 ACAACCCAATTCCGAGCAAAC 59.660 47.619 0.00 0.00 0.00 2.93
140 141 1.339610 CAACCCAATTCCGAGCAAACA 59.660 47.619 0.00 0.00 0.00 2.83
141 142 1.247567 ACCCAATTCCGAGCAAACAG 58.752 50.000 0.00 0.00 0.00 3.16
142 143 1.247567 CCCAATTCCGAGCAAACAGT 58.752 50.000 0.00 0.00 0.00 3.55
143 144 1.613437 CCCAATTCCGAGCAAACAGTT 59.387 47.619 0.00 0.00 0.00 3.16
144 145 2.351738 CCCAATTCCGAGCAAACAGTTC 60.352 50.000 0.00 0.00 0.00 3.01
145 146 2.351738 CCAATTCCGAGCAAACAGTTCC 60.352 50.000 0.00 0.00 0.00 3.62
146 147 1.534729 ATTCCGAGCAAACAGTTCCC 58.465 50.000 0.00 0.00 0.00 3.97
147 148 0.882927 TTCCGAGCAAACAGTTCCCG 60.883 55.000 0.00 0.00 0.00 5.14
148 149 1.597027 CCGAGCAAACAGTTCCCGT 60.597 57.895 0.00 0.00 0.00 5.28
149 150 1.164041 CCGAGCAAACAGTTCCCGTT 61.164 55.000 0.00 0.00 0.00 4.44
150 151 0.661020 CGAGCAAACAGTTCCCGTTT 59.339 50.000 0.00 0.00 37.04 3.60
151 152 1.064952 CGAGCAAACAGTTCCCGTTTT 59.935 47.619 0.00 0.00 34.40 2.43
152 153 2.288458 CGAGCAAACAGTTCCCGTTTTA 59.712 45.455 0.00 0.00 34.40 1.52
153 154 3.606153 CGAGCAAACAGTTCCCGTTTTAG 60.606 47.826 0.00 0.00 34.40 1.85
166 167 3.813166 CCCGTTTTAGCCATCATATTCGT 59.187 43.478 0.00 0.00 0.00 3.85
177 178 5.334105 GCCATCATATTCGTTGTCGCTATTT 60.334 40.000 0.00 0.00 36.96 1.40
178 179 6.299604 CCATCATATTCGTTGTCGCTATTTC 58.700 40.000 0.00 0.00 36.96 2.17
179 180 6.146184 CCATCATATTCGTTGTCGCTATTTCT 59.854 38.462 0.00 0.00 36.96 2.52
184 185 4.288670 TCGTTGTCGCTATTTCTCCTAG 57.711 45.455 0.00 0.00 36.96 3.02
202 203 5.278061 TCCTAGCTTATCCTGTACAAACCT 58.722 41.667 0.00 0.00 0.00 3.50
204 205 6.550108 TCCTAGCTTATCCTGTACAAACCTAG 59.450 42.308 0.00 0.00 0.00 3.02
205 206 6.324254 CCTAGCTTATCCTGTACAAACCTAGT 59.676 42.308 0.00 0.00 0.00 2.57
206 207 6.622427 AGCTTATCCTGTACAAACCTAGTT 57.378 37.500 0.00 0.00 0.00 2.24
221 223 1.815003 CTAGTTGGCCCAAGCTGAAAG 59.185 52.381 0.00 0.00 39.73 2.62
229 232 0.886563 CCAAGCTGAAAGAAGGCCAG 59.113 55.000 5.01 0.00 34.07 4.85
352 361 5.417811 TCACACAAACTTTGCATGTTCAAT 58.582 33.333 1.14 0.00 0.00 2.57
353 362 5.873712 TCACACAAACTTTGCATGTTCAATT 59.126 32.000 1.14 0.00 0.00 2.32
354 363 6.370994 TCACACAAACTTTGCATGTTCAATTT 59.629 30.769 1.14 0.00 0.00 1.82
488 1975 9.869844 TTAATGTAACAAAATTCAAAAATGCCG 57.130 25.926 0.00 0.00 0.00 5.69
523 2010 5.705609 ATAGTGCTTTGAAATTGACCGTT 57.294 34.783 0.00 0.00 0.00 4.44
556 2043 3.132646 ACAAAAGTTGCCATGTGTCACAT 59.867 39.130 12.87 12.87 39.91 3.21
559 2046 4.771590 AAGTTGCCATGTGTCACATAAG 57.228 40.909 18.00 13.29 36.53 1.73
561 2048 4.905429 AGTTGCCATGTGTCACATAAGTA 58.095 39.130 18.00 9.55 36.53 2.24
562 2049 5.312895 AGTTGCCATGTGTCACATAAGTAA 58.687 37.500 18.00 14.43 36.53 2.24
563 2050 5.412594 AGTTGCCATGTGTCACATAAGTAAG 59.587 40.000 18.00 5.08 36.53 2.34
564 2051 3.689161 TGCCATGTGTCACATAAGTAAGC 59.311 43.478 18.00 13.53 36.53 3.09
569 2056 7.489160 CCATGTGTCACATAAGTAAGCTAGTA 58.511 38.462 18.00 0.00 36.53 1.82
570 2057 7.435488 CCATGTGTCACATAAGTAAGCTAGTAC 59.565 40.741 18.00 0.00 36.53 2.73
571 2058 7.698506 TGTGTCACATAAGTAAGCTAGTACT 57.301 36.000 0.18 0.00 35.80 2.73
572 2059 8.797350 TGTGTCACATAAGTAAGCTAGTACTA 57.203 34.615 0.18 1.89 33.05 1.82
573 2060 8.671921 TGTGTCACATAAGTAAGCTAGTACTAC 58.328 37.037 0.18 0.00 33.05 2.73
574 2061 8.127954 GTGTCACATAAGTAAGCTAGTACTACC 58.872 40.741 0.00 0.00 33.05 3.18
575 2062 8.051535 TGTCACATAAGTAAGCTAGTACTACCT 58.948 37.037 0.00 0.00 33.05 3.08
576 2063 8.558700 GTCACATAAGTAAGCTAGTACTACCTC 58.441 40.741 0.00 0.00 33.05 3.85
577 2064 7.718753 TCACATAAGTAAGCTAGTACTACCTCC 59.281 40.741 0.00 0.00 33.05 4.30
578 2065 6.709846 ACATAAGTAAGCTAGTACTACCTCCG 59.290 42.308 0.00 0.00 33.05 4.63
579 2066 4.769345 AGTAAGCTAGTACTACCTCCGT 57.231 45.455 0.00 0.00 32.42 4.69
580 2067 4.702831 AGTAAGCTAGTACTACCTCCGTC 58.297 47.826 0.00 0.00 32.42 4.79
582 2069 2.126057 AGCTAGTACTACCTCCGTCCT 58.874 52.381 0.00 0.00 0.00 3.85
583 2070 2.158784 AGCTAGTACTACCTCCGTCCTG 60.159 54.545 0.00 0.00 0.00 3.86
585 2072 3.496515 GCTAGTACTACCTCCGTCCTGAT 60.497 52.174 0.00 0.00 0.00 2.90
586 2073 3.666345 AGTACTACCTCCGTCCTGATT 57.334 47.619 0.00 0.00 0.00 2.57
588 2075 5.121380 AGTACTACCTCCGTCCTGATTTA 57.879 43.478 0.00 0.00 0.00 1.40
589 2076 5.703310 AGTACTACCTCCGTCCTGATTTAT 58.297 41.667 0.00 0.00 0.00 1.40
590 2077 6.134754 AGTACTACCTCCGTCCTGATTTATT 58.865 40.000 0.00 0.00 0.00 1.40
594 2081 3.071167 ACCTCCGTCCTGATTTATTAGCC 59.929 47.826 0.00 0.00 0.00 3.93
595 2082 3.557264 CCTCCGTCCTGATTTATTAGCCC 60.557 52.174 0.00 0.00 0.00 5.19
598 2085 3.581332 CCGTCCTGATTTATTAGCCCCTA 59.419 47.826 0.00 0.00 0.00 3.53
599 2086 4.041198 CCGTCCTGATTTATTAGCCCCTAA 59.959 45.833 0.00 0.00 0.00 2.69
600 2087 5.238583 CGTCCTGATTTATTAGCCCCTAAG 58.761 45.833 0.00 0.00 29.02 2.18
601 2088 5.221661 CGTCCTGATTTATTAGCCCCTAAGT 60.222 44.000 0.00 0.00 29.02 2.24
602 2089 6.014840 CGTCCTGATTTATTAGCCCCTAAGTA 60.015 42.308 0.00 0.00 29.02 2.24
603 2090 7.310485 CGTCCTGATTTATTAGCCCCTAAGTAT 60.310 40.741 0.00 0.00 29.02 2.12
604 2091 8.383947 GTCCTGATTTATTAGCCCCTAAGTATT 58.616 37.037 0.00 0.00 29.02 1.89
605 2092 8.955794 TCCTGATTTATTAGCCCCTAAGTATTT 58.044 33.333 0.00 0.00 29.02 1.40
606 2093 9.588096 CCTGATTTATTAGCCCCTAAGTATTTT 57.412 33.333 0.00 0.00 29.02 1.82
610 2097 7.576861 TTATTAGCCCCTAAGTATTTTGTGC 57.423 36.000 0.00 0.00 29.02 4.57
611 2098 2.735151 AGCCCCTAAGTATTTTGTGCC 58.265 47.619 0.00 0.00 0.00 5.01
615 2102 4.081142 GCCCCTAAGTATTTTGTGCCAAAT 60.081 41.667 1.89 0.00 0.00 2.32
616 2103 5.570641 GCCCCTAAGTATTTTGTGCCAAATT 60.571 40.000 1.89 2.10 0.00 1.82
618 2105 6.939730 CCCCTAAGTATTTTGTGCCAAATTTT 59.060 34.615 1.89 0.00 0.00 1.82
619 2106 7.094848 CCCCTAAGTATTTTGTGCCAAATTTTG 60.095 37.037 1.99 1.99 0.00 2.44
620 2107 7.659390 CCCTAAGTATTTTGTGCCAAATTTTGA 59.341 33.333 10.72 0.00 0.00 2.69
621 2108 9.218440 CCTAAGTATTTTGTGCCAAATTTTGAT 57.782 29.630 10.72 0.00 0.00 2.57
624 2111 8.851541 AGTATTTTGTGCCAAATTTTGATCAT 57.148 26.923 10.72 0.00 0.00 2.45
625 2112 8.723311 AGTATTTTGTGCCAAATTTTGATCATG 58.277 29.630 10.72 0.00 0.00 3.07
626 2113 5.943706 TTTGTGCCAAATTTTGATCATGG 57.056 34.783 10.72 7.77 0.00 3.66
627 2114 4.886496 TGTGCCAAATTTTGATCATGGA 57.114 36.364 15.10 0.00 32.82 3.41
629 2116 5.806818 TGTGCCAAATTTTGATCATGGATT 58.193 33.333 15.10 5.00 32.82 3.01
630 2117 6.239396 TGTGCCAAATTTTGATCATGGATTT 58.761 32.000 15.10 10.04 32.82 2.17
658 2145 9.836864 ATTAACTAGATAATGCATGTCACAAGA 57.163 29.630 0.00 0.00 0.00 3.02
662 2149 9.836864 ACTAGATAATGCATGTCACAAGAAATA 57.163 29.630 0.00 0.00 0.00 1.40
667 2154 9.740239 ATAATGCATGTCACAAGAAATAATGTC 57.260 29.630 0.00 0.00 0.00 3.06
668 2155 6.572167 TGCATGTCACAAGAAATAATGTCA 57.428 33.333 0.00 0.00 0.00 3.58
671 2158 7.542824 TGCATGTCACAAGAAATAATGTCATTG 59.457 33.333 8.39 0.00 0.00 2.82
672 2159 7.756272 GCATGTCACAAGAAATAATGTCATTGA 59.244 33.333 8.39 0.00 0.00 2.57
754 2241 7.817418 ACATGTTGTCAGTAAAACTATGGTT 57.183 32.000 0.00 0.00 37.24 3.67
755 2242 8.911918 ACATGTTGTCAGTAAAACTATGGTTA 57.088 30.769 0.00 0.00 34.90 2.85
756 2243 9.344772 ACATGTTGTCAGTAAAACTATGGTTAA 57.655 29.630 0.00 0.00 34.90 2.01
788 2275 9.916397 AGCATAAAATACGAAAAGAACGATTAG 57.084 29.630 0.00 0.00 34.70 1.73
789 2276 9.910511 GCATAAAATACGAAAAGAACGATTAGA 57.089 29.630 0.00 0.00 34.70 2.10
793 2280 7.521509 AATACGAAAAGAACGATTAGACCAG 57.478 36.000 0.00 0.00 34.70 4.00
799 2553 1.747355 GAACGATTAGACCAGGACGGA 59.253 52.381 0.00 0.00 38.63 4.69
803 2557 3.181447 ACGATTAGACCAGGACGGAGATA 60.181 47.826 0.00 0.00 38.63 1.98
804 2558 3.437395 CGATTAGACCAGGACGGAGATAG 59.563 52.174 0.00 0.00 38.63 2.08
805 2559 3.947612 TTAGACCAGGACGGAGATAGT 57.052 47.619 0.00 0.00 38.63 2.12
806 2560 5.558818 GATTAGACCAGGACGGAGATAGTA 58.441 45.833 0.00 0.00 38.63 1.82
808 2562 1.881324 GACCAGGACGGAGATAGTAGC 59.119 57.143 0.00 0.00 38.63 3.58
809 2563 1.495574 ACCAGGACGGAGATAGTAGCT 59.504 52.381 0.00 0.00 38.63 3.32
810 2564 2.091775 ACCAGGACGGAGATAGTAGCTT 60.092 50.000 0.00 0.00 38.63 3.74
813 2567 4.767928 CCAGGACGGAGATAGTAGCTTATT 59.232 45.833 0.00 0.00 36.56 1.40
818 2572 7.288158 AGGACGGAGATAGTAGCTTATTTTCTT 59.712 37.037 0.00 0.00 0.00 2.52
843 2721 0.100146 ACGATCGGACGGAGCTTAAC 59.900 55.000 20.98 0.00 37.61 2.01
852 2730 4.496341 CGGACGGAGCTTAACGTAAATCTA 60.496 45.833 11.21 0.00 44.24 1.98
853 2731 5.343249 GGACGGAGCTTAACGTAAATCTAA 58.657 41.667 11.21 0.00 44.24 2.10
854 2732 5.230936 GGACGGAGCTTAACGTAAATCTAAC 59.769 44.000 11.21 0.00 44.24 2.34
855 2733 5.105063 ACGGAGCTTAACGTAAATCTAACC 58.895 41.667 9.80 0.00 42.15 2.85
856 2734 4.205792 CGGAGCTTAACGTAAATCTAACCG 59.794 45.833 0.00 0.00 0.00 4.44
899 2781 8.776376 AATTTGGAGGCTGTTAATAAAATGTG 57.224 30.769 0.00 0.00 0.00 3.21
918 2800 3.608760 TCTCGAGTGAGTGAGACGT 57.391 52.632 13.13 0.00 43.09 4.34
926 2808 2.607750 AGTGAGACGTGGGCCCAT 60.608 61.111 31.45 14.17 0.00 4.00
985 2867 4.338012 TCCTTCGTACTCCAAGTGTGATA 58.662 43.478 0.00 0.00 0.00 2.15
1046 2929 0.314935 TCGCTTAAACCTCGTCCGTT 59.685 50.000 0.00 0.00 0.00 4.44
1325 3214 2.440247 GGTTTCCATCCGGGCCTG 60.440 66.667 3.88 3.88 36.21 4.85
1350 3239 2.032681 GCAACAACCTCCTCGCCT 59.967 61.111 0.00 0.00 0.00 5.52
1650 3539 1.210967 ACGTTTTCCTGACCAACTCCA 59.789 47.619 0.00 0.00 0.00 3.86
1665 3554 4.442052 CCAACTCCATCATCGACATGTACT 60.442 45.833 0.00 0.00 0.00 2.73
1672 3561 5.221244 CCATCATCGACATGTACTCCAAGTA 60.221 44.000 0.00 0.00 0.00 2.24
1857 3746 1.289160 CTTGGGTGGGATCCTCAAGA 58.711 55.000 21.67 1.88 37.65 3.02
2090 3979 4.678423 GGTAATGACCCTTGCCCC 57.322 61.111 0.00 0.00 40.23 5.80
2138 4027 1.561643 TCTCAGACTTGCTCCGGATT 58.438 50.000 3.57 0.00 0.00 3.01
2339 4228 1.277273 CTGAGGTGCTTCCAGATGACA 59.723 52.381 1.79 0.00 39.02 3.58
2385 4274 4.823442 GGACATCCATGATTACAGCATTCA 59.177 41.667 0.00 0.00 35.64 2.57
2406 4295 3.789756 CACGCATGATGAGAATTTTGAGC 59.210 43.478 2.47 0.00 0.00 4.26
2456 4345 3.795688 TCTGTTGGAAAAGAGCCAGAT 57.204 42.857 0.00 0.00 36.64 2.90
2477 4366 6.252441 CAGATCAGTTCACTTTATCGAGTGTC 59.748 42.308 0.00 1.38 45.64 3.67
2552 4441 7.492669 CACTGTTATACGATCAAATCTGGACTT 59.507 37.037 0.00 0.00 0.00 3.01
2743 4632 4.346418 GCTCCTGGAGAAGATGAAGGATTA 59.654 45.833 27.53 0.00 36.48 1.75
2857 4748 6.003326 TCTTGCAAAGTAATGATTGACCTGA 58.997 36.000 0.00 0.00 46.34 3.86
2991 4898 9.334947 CAATATTCAACTCATCCTACACAGAAT 57.665 33.333 0.00 0.00 0.00 2.40
2993 4900 4.507710 TCAACTCATCCTACACAGAATGC 58.492 43.478 0.00 0.00 42.53 3.56
3089 4996 3.615224 AAATCGATTTGCCAAATGCCT 57.385 38.095 22.16 0.00 40.16 4.75
3185 5092 5.616975 TGTGATATCATACCTACCCTCCT 57.383 43.478 9.02 0.00 0.00 3.69
3188 5095 5.419471 GTGATATCATACCTACCCTCCTGAC 59.581 48.000 9.02 0.00 0.00 3.51
3369 5276 5.405935 ACCCTTCCTGAACAAAATTATGC 57.594 39.130 0.00 0.00 0.00 3.14
3554 5463 4.349048 TGCTATCAGATTATGGCTGTTCCT 59.651 41.667 0.00 0.00 34.67 3.36
4046 5955 0.034767 CCAGAGCAGAAAGGATGGCA 60.035 55.000 0.00 0.00 0.00 4.92
4096 6005 2.602676 GGGTGTGGCTCTTGGGCTA 61.603 63.158 0.00 0.00 41.48 3.93
4249 6158 6.384258 TTTCATCGTTTTGATCAAGGTTCA 57.616 33.333 8.41 0.00 34.13 3.18
4304 6213 9.670442 AAGTGATATATAACCTTGGGAGTAGAA 57.330 33.333 0.00 0.00 0.00 2.10
4567 6504 3.405831 CTGTTCATCTCTGCTGAAACCA 58.594 45.455 0.00 0.00 34.59 3.67
4709 6648 1.175347 TGCTGTTTTGCGCCATGGTA 61.175 50.000 14.67 0.00 35.36 3.25
4710 6649 0.038709 GCTGTTTTGCGCCATGGTAA 60.039 50.000 14.67 3.85 0.00 2.85
4816 6756 2.978156 TGGGGAGAAAAGCTCATTGT 57.022 45.000 0.00 0.00 45.81 2.71
4828 6768 5.633830 AAGCTCATTGTGAAACGAATGAT 57.366 34.783 0.00 0.00 40.69 2.45
4830 6770 3.545078 GCTCATTGTGAAACGAATGATGC 59.455 43.478 0.00 0.00 40.69 3.91
4859 6799 7.453393 ACACTCTCACCAAGATGAAAGAATTA 58.547 34.615 0.00 0.00 32.19 1.40
4860 6800 7.939039 ACACTCTCACCAAGATGAAAGAATTAA 59.061 33.333 0.00 0.00 32.19 1.40
4864 6804 9.519191 TCTCACCAAGATGAAAGAATTAATTCA 57.481 29.630 26.02 10.73 39.23 2.57
4865 6805 9.565213 CTCACCAAGATGAAAGAATTAATTCAC 57.435 33.333 26.02 17.61 38.29 3.18
4866 6806 9.300681 TCACCAAGATGAAAGAATTAATTCACT 57.699 29.630 26.02 14.51 38.29 3.41
4867 6807 9.350357 CACCAAGATGAAAGAATTAATTCACTG 57.650 33.333 26.02 12.33 38.29 3.66
4868 6808 8.526147 ACCAAGATGAAAGAATTAATTCACTGG 58.474 33.333 26.02 19.80 38.29 4.00
4869 6809 7.977853 CCAAGATGAAAGAATTAATTCACTGGG 59.022 37.037 26.02 17.17 38.29 4.45
4870 6810 8.742777 CAAGATGAAAGAATTAATTCACTGGGA 58.257 33.333 26.02 8.50 38.29 4.37
4912 6856 5.357878 TGACGTAGGTTACAGGTATAGTTGG 59.642 44.000 0.00 0.00 0.00 3.77
4997 6941 6.389830 TTGCATTTATATACCCTTGTGCTG 57.610 37.500 0.00 0.00 32.87 4.41
5282 7238 5.637810 CACCACACGTCTCTAATGTAAACAT 59.362 40.000 0.00 0.00 38.41 2.71
5330 7286 8.156165 TGCATGTAGGAATCTTTTTGGATTTTT 58.844 29.630 0.00 0.00 36.24 1.94
5493 7450 7.999450 TGCCATGTCTATTGCATATGAATTA 57.001 32.000 6.97 0.00 30.76 1.40
5513 7470 9.072375 TGAATTACCATGATGTTTACACTGAAA 57.928 29.630 0.00 0.00 0.00 2.69
5790 7747 1.403679 TGGCAACTGCAGTGTAAACAC 59.596 47.619 22.49 5.07 44.36 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.887933 CCACCGGTGAAAATTGAGGG 59.112 55.000 36.07 11.23 0.00 4.30
5 6 0.243636 GAGCCCACCGGTGAAAATTG 59.756 55.000 36.07 17.33 0.00 2.32
6 7 1.241315 CGAGCCCACCGGTGAAAATT 61.241 55.000 36.07 15.70 0.00 1.82
8 9 2.281208 CGAGCCCACCGGTGAAAA 60.281 61.111 36.07 0.00 0.00 2.29
16 17 4.021925 AAGTGAGGCGAGCCCACC 62.022 66.667 22.84 10.54 37.72 4.61
17 18 2.743928 CAAGTGAGGCGAGCCCAC 60.744 66.667 20.53 20.53 37.46 4.61
18 19 2.922503 TCAAGTGAGGCGAGCCCA 60.923 61.111 10.95 5.87 36.58 5.36
19 20 2.435059 GTCAAGTGAGGCGAGCCC 60.435 66.667 10.95 3.15 36.58 5.19
20 21 2.435059 GGTCAAGTGAGGCGAGCC 60.435 66.667 5.89 5.89 0.00 4.70
21 22 0.884704 TTTGGTCAAGTGAGGCGAGC 60.885 55.000 0.00 0.00 0.00 5.03
22 23 1.734465 GATTTGGTCAAGTGAGGCGAG 59.266 52.381 0.00 0.00 0.00 5.03
23 24 1.347707 AGATTTGGTCAAGTGAGGCGA 59.652 47.619 0.00 0.00 0.00 5.54
24 25 1.734465 GAGATTTGGTCAAGTGAGGCG 59.266 52.381 0.00 0.00 0.00 5.52
25 26 2.746362 CTGAGATTTGGTCAAGTGAGGC 59.254 50.000 0.00 0.00 0.00 4.70
26 27 2.746362 GCTGAGATTTGGTCAAGTGAGG 59.254 50.000 0.00 0.00 0.00 3.86
27 28 2.746362 GGCTGAGATTTGGTCAAGTGAG 59.254 50.000 0.00 0.00 0.00 3.51
28 29 2.106338 TGGCTGAGATTTGGTCAAGTGA 59.894 45.455 0.00 0.00 0.00 3.41
29 30 2.507484 TGGCTGAGATTTGGTCAAGTG 58.493 47.619 0.00 0.00 0.00 3.16
30 31 2.957402 TGGCTGAGATTTGGTCAAGT 57.043 45.000 0.00 0.00 0.00 3.16
31 32 3.760151 TGATTGGCTGAGATTTGGTCAAG 59.240 43.478 0.00 0.00 0.00 3.02
32 33 3.760151 CTGATTGGCTGAGATTTGGTCAA 59.240 43.478 0.00 0.00 0.00 3.18
33 34 3.349927 CTGATTGGCTGAGATTTGGTCA 58.650 45.455 0.00 0.00 0.00 4.02
34 35 2.098770 GCTGATTGGCTGAGATTTGGTC 59.901 50.000 0.00 0.00 0.00 4.02
35 36 2.097825 GCTGATTGGCTGAGATTTGGT 58.902 47.619 0.00 0.00 0.00 3.67
36 37 2.358267 GAGCTGATTGGCTGAGATTTGG 59.642 50.000 0.00 0.00 43.20 3.28
37 38 3.280295 AGAGCTGATTGGCTGAGATTTG 58.720 45.455 0.00 0.00 43.20 2.32
38 39 3.648507 AGAGCTGATTGGCTGAGATTT 57.351 42.857 0.00 0.00 43.20 2.17
39 40 4.450053 GTTAGAGCTGATTGGCTGAGATT 58.550 43.478 0.00 0.00 43.20 2.40
40 41 3.181456 GGTTAGAGCTGATTGGCTGAGAT 60.181 47.826 0.00 0.00 43.20 2.75
41 42 2.169352 GGTTAGAGCTGATTGGCTGAGA 59.831 50.000 0.00 0.00 43.20 3.27
42 43 2.093288 TGGTTAGAGCTGATTGGCTGAG 60.093 50.000 0.00 0.00 43.20 3.35
43 44 1.908619 TGGTTAGAGCTGATTGGCTGA 59.091 47.619 0.00 0.00 43.20 4.26
44 45 2.012673 GTGGTTAGAGCTGATTGGCTG 58.987 52.381 0.00 0.00 43.20 4.85
45 46 1.406069 CGTGGTTAGAGCTGATTGGCT 60.406 52.381 0.00 0.00 46.11 4.75
46 47 1.009829 CGTGGTTAGAGCTGATTGGC 58.990 55.000 0.00 0.00 0.00 4.52
47 48 2.271800 GACGTGGTTAGAGCTGATTGG 58.728 52.381 0.00 0.00 0.00 3.16
48 49 1.920574 CGACGTGGTTAGAGCTGATTG 59.079 52.381 0.00 0.00 0.00 2.67
49 50 1.544691 ACGACGTGGTTAGAGCTGATT 59.455 47.619 0.00 0.00 0.00 2.57
50 51 1.132643 GACGACGTGGTTAGAGCTGAT 59.867 52.381 4.58 0.00 0.00 2.90
51 52 0.520404 GACGACGTGGTTAGAGCTGA 59.480 55.000 4.58 0.00 0.00 4.26
52 53 0.240145 TGACGACGTGGTTAGAGCTG 59.760 55.000 4.58 0.00 0.00 4.24
53 54 0.956633 TTGACGACGTGGTTAGAGCT 59.043 50.000 4.58 0.00 0.00 4.09
54 55 1.918609 GATTGACGACGTGGTTAGAGC 59.081 52.381 4.58 0.00 0.00 4.09
55 56 2.527100 GGATTGACGACGTGGTTAGAG 58.473 52.381 4.58 0.00 0.00 2.43
56 57 1.203052 GGGATTGACGACGTGGTTAGA 59.797 52.381 4.58 0.00 0.00 2.10
57 58 1.636988 GGGATTGACGACGTGGTTAG 58.363 55.000 4.58 0.00 0.00 2.34
58 59 0.247185 GGGGATTGACGACGTGGTTA 59.753 55.000 4.58 0.00 0.00 2.85
59 60 1.004200 GGGGATTGACGACGTGGTT 60.004 57.895 4.58 0.00 0.00 3.67
60 61 2.660802 GGGGATTGACGACGTGGT 59.339 61.111 4.58 1.66 0.00 4.16
61 62 2.125269 GGGGGATTGACGACGTGG 60.125 66.667 4.58 0.00 0.00 4.94
62 63 1.936436 TACGGGGGATTGACGACGTG 61.936 60.000 4.58 0.00 35.97 4.49
63 64 1.250154 TTACGGGGGATTGACGACGT 61.250 55.000 0.00 0.00 38.23 4.34
64 65 0.108709 TTTACGGGGGATTGACGACG 60.109 55.000 0.00 0.00 0.00 5.12
65 66 1.066645 AGTTTACGGGGGATTGACGAC 60.067 52.381 0.00 0.00 0.00 4.34
66 67 1.066716 CAGTTTACGGGGGATTGACGA 60.067 52.381 0.00 0.00 0.00 4.20
67 68 1.365699 CAGTTTACGGGGGATTGACG 58.634 55.000 0.00 0.00 0.00 4.35
68 69 1.092348 GCAGTTTACGGGGGATTGAC 58.908 55.000 0.00 0.00 0.00 3.18
69 70 0.391927 CGCAGTTTACGGGGGATTGA 60.392 55.000 0.00 0.00 0.00 2.57
70 71 0.675522 ACGCAGTTTACGGGGGATTG 60.676 55.000 2.61 0.00 37.78 2.67
71 72 0.675522 CACGCAGTTTACGGGGGATT 60.676 55.000 2.61 0.00 41.61 3.01
72 73 1.078708 CACGCAGTTTACGGGGGAT 60.079 57.895 2.61 0.00 41.61 3.85
73 74 2.344500 CACGCAGTTTACGGGGGA 59.656 61.111 2.61 0.00 41.61 4.81
74 75 2.031465 ACACGCAGTTTACGGGGG 59.969 61.111 2.61 0.00 41.61 5.40
75 76 1.289109 CTCACACGCAGTTTACGGGG 61.289 60.000 0.00 0.00 41.61 5.73
76 77 0.599204 ACTCACACGCAGTTTACGGG 60.599 55.000 0.00 0.00 41.61 5.28
77 78 0.782384 GACTCACACGCAGTTTACGG 59.218 55.000 0.00 0.00 41.61 4.02
78 79 0.782384 GGACTCACACGCAGTTTACG 59.218 55.000 0.00 0.00 41.61 3.18
79 80 1.792949 CTGGACTCACACGCAGTTTAC 59.207 52.381 0.00 0.00 41.61 2.01
80 81 1.872237 GCTGGACTCACACGCAGTTTA 60.872 52.381 0.00 0.00 41.61 2.01
81 82 1.160329 GCTGGACTCACACGCAGTTT 61.160 55.000 0.00 0.00 41.61 2.66
82 83 1.595382 GCTGGACTCACACGCAGTT 60.595 57.895 0.00 0.00 41.61 3.16
84 85 0.952497 AATGCTGGACTCACACGCAG 60.952 55.000 0.00 0.00 33.72 5.18
85 86 1.071299 AATGCTGGACTCACACGCA 59.929 52.632 0.00 0.00 34.83 5.24
86 87 1.499056 CAATGCTGGACTCACACGC 59.501 57.895 0.00 0.00 0.00 5.34
87 88 0.952497 AGCAATGCTGGACTCACACG 60.952 55.000 7.07 0.00 37.57 4.49
88 89 0.801251 GAGCAATGCTGGACTCACAC 59.199 55.000 14.48 0.00 39.88 3.82
89 90 0.321919 GGAGCAATGCTGGACTCACA 60.322 55.000 14.48 0.00 39.88 3.58
90 91 1.364626 CGGAGCAATGCTGGACTCAC 61.365 60.000 14.48 0.00 39.88 3.51
91 92 1.078918 CGGAGCAATGCTGGACTCA 60.079 57.895 14.48 0.00 39.88 3.41
92 93 0.674895 AACGGAGCAATGCTGGACTC 60.675 55.000 14.48 0.00 39.88 3.36
93 94 0.674895 GAACGGAGCAATGCTGGACT 60.675 55.000 14.48 0.00 39.88 3.85
94 95 1.796796 GAACGGAGCAATGCTGGAC 59.203 57.895 14.48 1.39 39.88 4.02
95 96 1.741401 CGAACGGAGCAATGCTGGA 60.741 57.895 14.48 0.00 39.88 3.86
96 97 2.753966 CCGAACGGAGCAATGCTGG 61.754 63.158 14.48 6.93 39.88 4.85
97 98 2.753966 CCCGAACGGAGCAATGCTG 61.754 63.158 14.48 0.81 39.88 4.41
98 99 2.436646 CCCGAACGGAGCAATGCT 60.437 61.111 7.79 7.79 43.88 3.79
99 100 3.508840 CCCCGAACGGAGCAATGC 61.509 66.667 15.07 0.00 37.50 3.56
100 101 2.587322 TAGCCCCGAACGGAGCAATG 62.587 60.000 20.35 0.80 37.50 2.82
101 102 2.363975 TAGCCCCGAACGGAGCAAT 61.364 57.895 20.35 4.83 37.50 3.56
102 103 2.998480 TAGCCCCGAACGGAGCAA 60.998 61.111 20.35 0.00 37.50 3.91
103 104 3.766691 GTAGCCCCGAACGGAGCA 61.767 66.667 20.35 5.36 37.50 4.26
104 105 3.305177 TTGTAGCCCCGAACGGAGC 62.305 63.158 15.07 13.27 37.50 4.70
105 106 1.447314 GTTGTAGCCCCGAACGGAG 60.447 63.158 15.07 2.19 37.50 4.63
106 107 2.658422 GTTGTAGCCCCGAACGGA 59.342 61.111 15.07 0.00 37.50 4.69
107 108 2.435410 GGTTGTAGCCCCGAACGG 60.435 66.667 6.25 6.25 0.00 4.44
108 109 2.435410 GGGTTGTAGCCCCGAACG 60.435 66.667 0.00 0.00 42.89 3.95
115 116 1.379527 CTCGGAATTGGGTTGTAGCC 58.620 55.000 0.00 0.00 36.00 3.93
116 117 0.733150 GCTCGGAATTGGGTTGTAGC 59.267 55.000 0.00 0.00 0.00 3.58
117 118 2.107950 TGCTCGGAATTGGGTTGTAG 57.892 50.000 0.00 0.00 0.00 2.74
118 119 2.554893 GTTTGCTCGGAATTGGGTTGTA 59.445 45.455 0.00 0.00 0.00 2.41
119 120 1.339929 GTTTGCTCGGAATTGGGTTGT 59.660 47.619 0.00 0.00 0.00 3.32
120 121 1.339610 TGTTTGCTCGGAATTGGGTTG 59.660 47.619 0.00 0.00 0.00 3.77
121 122 1.613437 CTGTTTGCTCGGAATTGGGTT 59.387 47.619 0.00 0.00 0.00 4.11
122 123 1.247567 CTGTTTGCTCGGAATTGGGT 58.752 50.000 0.00 0.00 0.00 4.51
123 124 1.247567 ACTGTTTGCTCGGAATTGGG 58.752 50.000 0.00 0.00 0.00 4.12
124 125 2.351738 GGAACTGTTTGCTCGGAATTGG 60.352 50.000 0.00 0.00 0.00 3.16
125 126 2.351738 GGGAACTGTTTGCTCGGAATTG 60.352 50.000 0.00 0.00 0.00 2.32
126 127 1.886542 GGGAACTGTTTGCTCGGAATT 59.113 47.619 0.00 0.00 0.00 2.17
127 128 1.534729 GGGAACTGTTTGCTCGGAAT 58.465 50.000 0.00 0.00 0.00 3.01
128 129 0.882927 CGGGAACTGTTTGCTCGGAA 60.883 55.000 0.00 0.00 0.00 4.30
129 130 1.301401 CGGGAACTGTTTGCTCGGA 60.301 57.895 0.00 0.00 0.00 4.55
130 131 3.253955 CGGGAACTGTTTGCTCGG 58.746 61.111 0.00 0.00 0.00 4.63
139 140 2.432444 TGATGGCTAAAACGGGAACTG 58.568 47.619 0.00 0.00 42.99 3.16
140 141 2.871096 TGATGGCTAAAACGGGAACT 57.129 45.000 0.00 0.00 0.00 3.01
141 142 5.560183 CGAATATGATGGCTAAAACGGGAAC 60.560 44.000 0.00 0.00 0.00 3.62
142 143 4.513692 CGAATATGATGGCTAAAACGGGAA 59.486 41.667 0.00 0.00 0.00 3.97
143 144 4.062293 CGAATATGATGGCTAAAACGGGA 58.938 43.478 0.00 0.00 0.00 5.14
144 145 3.813166 ACGAATATGATGGCTAAAACGGG 59.187 43.478 0.00 0.00 0.00 5.28
145 146 5.204833 CAACGAATATGATGGCTAAAACGG 58.795 41.667 0.00 0.00 0.00 4.44
146 147 5.806286 ACAACGAATATGATGGCTAAAACG 58.194 37.500 0.00 0.00 0.00 3.60
147 148 5.901884 CGACAACGAATATGATGGCTAAAAC 59.098 40.000 0.00 0.00 42.66 2.43
148 149 5.503357 GCGACAACGAATATGATGGCTAAAA 60.503 40.000 0.00 0.00 42.66 1.52
149 150 4.025229 GCGACAACGAATATGATGGCTAAA 60.025 41.667 0.00 0.00 42.66 1.85
150 151 3.493129 GCGACAACGAATATGATGGCTAA 59.507 43.478 0.00 0.00 42.66 3.09
151 152 3.057019 GCGACAACGAATATGATGGCTA 58.943 45.455 0.00 0.00 42.66 3.93
152 153 1.867233 GCGACAACGAATATGATGGCT 59.133 47.619 0.00 0.00 42.66 4.75
153 154 1.867233 AGCGACAACGAATATGATGGC 59.133 47.619 0.00 0.00 42.66 4.40
177 178 5.363005 GGTTTGTACAGGATAAGCTAGGAGA 59.637 44.000 0.00 0.00 0.00 3.71
178 179 5.364157 AGGTTTGTACAGGATAAGCTAGGAG 59.636 44.000 7.73 0.00 0.00 3.69
179 180 5.278061 AGGTTTGTACAGGATAAGCTAGGA 58.722 41.667 7.73 0.00 0.00 2.94
184 185 5.585047 CCAACTAGGTTTGTACAGGATAAGC 59.415 44.000 0.00 0.00 0.00 3.09
202 203 1.423541 TCTTTCAGCTTGGGCCAACTA 59.576 47.619 16.66 0.00 39.73 2.24
204 205 1.000171 CTTCTTTCAGCTTGGGCCAAC 60.000 52.381 16.66 12.53 39.73 3.77
205 206 1.331214 CTTCTTTCAGCTTGGGCCAA 58.669 50.000 19.68 19.68 39.73 4.52
206 207 0.540365 CCTTCTTTCAGCTTGGGCCA 60.540 55.000 0.00 0.00 39.73 5.36
221 223 1.926426 ATGGGCTGTACCTGGCCTTC 61.926 60.000 22.61 9.33 45.54 3.46
314 323 7.039270 AGTTTGTGTGAACATAACCTTTTTCC 58.961 34.615 7.41 0.00 31.94 3.13
315 324 8.474006 AAGTTTGTGTGAACATAACCTTTTTC 57.526 30.769 0.00 0.00 28.45 2.29
320 329 5.105554 TGCAAAGTTTGTGTGAACATAACCT 60.106 36.000 16.70 0.00 31.94 3.50
325 334 4.757594 ACATGCAAAGTTTGTGTGAACAT 58.242 34.783 21.37 11.76 31.94 2.71
426 445 9.537192 CTATGATTTTCAATACATGTGGCATTT 57.463 29.630 9.11 0.00 0.00 2.32
427 446 8.916062 TCTATGATTTTCAATACATGTGGCATT 58.084 29.630 9.11 0.00 0.00 3.56
428 447 8.467963 TCTATGATTTTCAATACATGTGGCAT 57.532 30.769 9.11 0.00 0.00 4.40
429 448 7.774625 TCTCTATGATTTTCAATACATGTGGCA 59.225 33.333 9.11 0.00 0.00 4.92
462 1947 9.869844 CGGCATTTTTGAATTTTGTTACATTAA 57.130 25.926 0.00 0.00 0.00 1.40
466 1951 6.313905 ACACGGCATTTTTGAATTTTGTTACA 59.686 30.769 0.00 0.00 0.00 2.41
467 1952 6.710611 ACACGGCATTTTTGAATTTTGTTAC 58.289 32.000 0.00 0.00 0.00 2.50
483 1970 4.394920 CACTATTCTACCAAAACACGGCAT 59.605 41.667 0.00 0.00 0.00 4.40
488 1975 6.966021 TCAAAGCACTATTCTACCAAAACAC 58.034 36.000 0.00 0.00 0.00 3.32
523 2010 9.606631 ACATGGCAACTTTTGTTTATTTTTCTA 57.393 25.926 0.00 0.00 41.35 2.10
556 2043 6.240549 ACGGAGGTAGTACTAGCTTACTTA 57.759 41.667 29.92 0.00 43.18 2.24
559 2046 3.812609 GGACGGAGGTAGTACTAGCTTAC 59.187 52.174 29.92 24.12 43.18 2.34
561 2048 2.509131 AGGACGGAGGTAGTACTAGCTT 59.491 50.000 29.92 17.85 43.18 3.74
562 2049 2.126057 AGGACGGAGGTAGTACTAGCT 58.874 52.381 29.81 29.81 45.49 3.32
563 2050 2.158842 TCAGGACGGAGGTAGTACTAGC 60.159 54.545 21.85 21.85 30.29 3.42
564 2051 3.834489 TCAGGACGGAGGTAGTACTAG 57.166 52.381 1.87 0.00 30.29 2.57
569 2056 5.010820 GCTAATAAATCAGGACGGAGGTAGT 59.989 44.000 0.00 0.00 0.00 2.73
570 2057 5.471257 GCTAATAAATCAGGACGGAGGTAG 58.529 45.833 0.00 0.00 0.00 3.18
571 2058 4.282703 GGCTAATAAATCAGGACGGAGGTA 59.717 45.833 0.00 0.00 0.00 3.08
572 2059 3.071167 GGCTAATAAATCAGGACGGAGGT 59.929 47.826 0.00 0.00 0.00 3.85
573 2060 3.557264 GGGCTAATAAATCAGGACGGAGG 60.557 52.174 0.00 0.00 0.00 4.30
574 2061 3.557264 GGGGCTAATAAATCAGGACGGAG 60.557 52.174 0.00 0.00 0.00 4.63
575 2062 2.370849 GGGGCTAATAAATCAGGACGGA 59.629 50.000 0.00 0.00 0.00 4.69
576 2063 2.372172 AGGGGCTAATAAATCAGGACGG 59.628 50.000 0.00 0.00 0.00 4.79
577 2064 3.771577 AGGGGCTAATAAATCAGGACG 57.228 47.619 0.00 0.00 0.00 4.79
578 2065 6.189036 ACTTAGGGGCTAATAAATCAGGAC 57.811 41.667 0.00 0.00 0.00 3.85
579 2066 8.520119 AATACTTAGGGGCTAATAAATCAGGA 57.480 34.615 0.00 0.00 0.00 3.86
580 2067 9.588096 AAAATACTTAGGGGCTAATAAATCAGG 57.412 33.333 0.00 0.00 0.00 3.86
582 2069 9.930158 ACAAAATACTTAGGGGCTAATAAATCA 57.070 29.630 0.00 0.00 0.00 2.57
585 2072 7.068962 GGCACAAAATACTTAGGGGCTAATAAA 59.931 37.037 0.00 0.00 0.00 1.40
586 2073 6.548251 GGCACAAAATACTTAGGGGCTAATAA 59.452 38.462 0.00 0.00 0.00 1.40
588 2075 4.893524 GGCACAAAATACTTAGGGGCTAAT 59.106 41.667 0.00 0.00 0.00 1.73
589 2076 4.263994 TGGCACAAAATACTTAGGGGCTAA 60.264 41.667 0.00 0.00 31.92 3.09
590 2077 3.267291 TGGCACAAAATACTTAGGGGCTA 59.733 43.478 0.00 0.00 31.92 3.93
606 2093 4.886496 TCCATGATCAAAATTTGGCACA 57.114 36.364 5.83 4.70 0.00 4.57
607 2094 6.746745 AAATCCATGATCAAAATTTGGCAC 57.253 33.333 5.83 0.00 0.00 5.01
635 2122 8.565896 TTTCTTGTGACATGCATTATCTAGTT 57.434 30.769 0.00 0.00 0.00 2.24
636 2123 8.743085 ATTTCTTGTGACATGCATTATCTAGT 57.257 30.769 0.00 0.00 0.00 2.57
639 2126 9.961265 CATTATTTCTTGTGACATGCATTATCT 57.039 29.630 0.00 0.00 0.00 1.98
641 2128 9.740239 GACATTATTTCTTGTGACATGCATTAT 57.260 29.630 0.00 0.00 0.00 1.28
642 2129 8.738106 TGACATTATTTCTTGTGACATGCATTA 58.262 29.630 0.00 0.00 0.00 1.90
643 2130 7.604549 TGACATTATTTCTTGTGACATGCATT 58.395 30.769 0.00 0.00 0.00 3.56
644 2131 7.160547 TGACATTATTTCTTGTGACATGCAT 57.839 32.000 0.00 0.00 0.00 3.96
646 2133 7.756272 TCAATGACATTATTTCTTGTGACATGC 59.244 33.333 0.00 0.00 29.93 4.06
647 2134 9.628746 TTCAATGACATTATTTCTTGTGACATG 57.371 29.630 0.00 0.00 29.93 3.21
728 2215 8.911918 ACCATAGTTTTACTGACAACATGTTA 57.088 30.769 11.53 0.00 0.00 2.41
729 2216 7.817418 ACCATAGTTTTACTGACAACATGTT 57.183 32.000 4.92 4.92 0.00 2.71
730 2217 7.817418 AACCATAGTTTTACTGACAACATGT 57.183 32.000 0.00 0.00 29.61 3.21
762 2249 9.916397 CTAATCGTTCTTTTCGTATTTTATGCT 57.084 29.630 0.00 0.00 0.00 3.79
766 2253 9.421806 TGGTCTAATCGTTCTTTTCGTATTTTA 57.578 29.630 0.00 0.00 0.00 1.52
767 2254 8.314143 TGGTCTAATCGTTCTTTTCGTATTTT 57.686 30.769 0.00 0.00 0.00 1.82
768 2255 7.064253 CCTGGTCTAATCGTTCTTTTCGTATTT 59.936 37.037 0.00 0.00 0.00 1.40
770 2257 6.040878 CCTGGTCTAATCGTTCTTTTCGTAT 58.959 40.000 0.00 0.00 0.00 3.06
771 2258 5.183713 TCCTGGTCTAATCGTTCTTTTCGTA 59.816 40.000 0.00 0.00 0.00 3.43
772 2259 4.021719 TCCTGGTCTAATCGTTCTTTTCGT 60.022 41.667 0.00 0.00 0.00 3.85
773 2260 4.326548 GTCCTGGTCTAATCGTTCTTTTCG 59.673 45.833 0.00 0.00 0.00 3.46
775 2262 4.243270 CGTCCTGGTCTAATCGTTCTTTT 58.757 43.478 0.00 0.00 0.00 2.27
776 2263 3.368116 CCGTCCTGGTCTAATCGTTCTTT 60.368 47.826 0.00 0.00 0.00 2.52
777 2264 2.165845 CCGTCCTGGTCTAATCGTTCTT 59.834 50.000 0.00 0.00 0.00 2.52
779 2266 1.747355 TCCGTCCTGGTCTAATCGTTC 59.253 52.381 0.00 0.00 39.52 3.95
782 2269 1.676746 TCTCCGTCCTGGTCTAATCG 58.323 55.000 0.00 0.00 39.52 3.34
783 2270 4.400120 ACTATCTCCGTCCTGGTCTAATC 58.600 47.826 0.00 0.00 39.52 1.75
784 2271 4.456662 ACTATCTCCGTCCTGGTCTAAT 57.543 45.455 0.00 0.00 39.52 1.73
785 2272 3.947612 ACTATCTCCGTCCTGGTCTAA 57.052 47.619 0.00 0.00 39.52 2.10
786 2273 3.244491 GCTACTATCTCCGTCCTGGTCTA 60.244 52.174 0.00 0.00 39.52 2.59
787 2274 2.487625 GCTACTATCTCCGTCCTGGTCT 60.488 54.545 0.00 0.00 39.52 3.85
788 2275 1.881324 GCTACTATCTCCGTCCTGGTC 59.119 57.143 0.00 0.00 39.52 4.02
789 2276 1.495574 AGCTACTATCTCCGTCCTGGT 59.504 52.381 0.00 0.00 39.52 4.00
790 2277 2.279935 AGCTACTATCTCCGTCCTGG 57.720 55.000 0.00 0.00 40.09 4.45
791 2278 5.968528 AATAAGCTACTATCTCCGTCCTG 57.031 43.478 0.00 0.00 0.00 3.86
793 2280 6.983984 AGAAAATAAGCTACTATCTCCGTCC 58.016 40.000 0.00 0.00 0.00 4.79
818 2572 1.705256 CTCCGTCCGATCGTCAAAAA 58.295 50.000 15.09 0.00 0.00 1.94
823 2577 0.379669 TTAAGCTCCGTCCGATCGTC 59.620 55.000 15.09 5.94 0.00 4.20
824 2578 0.100146 GTTAAGCTCCGTCCGATCGT 59.900 55.000 15.09 0.00 0.00 3.73
827 2581 1.382522 TACGTTAAGCTCCGTCCGAT 58.617 50.000 9.00 0.00 38.43 4.18
832 2586 5.105063 GGTTAGATTTACGTTAAGCTCCGT 58.895 41.667 8.50 10.33 40.87 4.69
833 2587 4.205792 CGGTTAGATTTACGTTAAGCTCCG 59.794 45.833 15.15 15.15 28.91 4.63
834 2588 5.005107 CACGGTTAGATTTACGTTAAGCTCC 59.995 44.000 8.50 4.45 37.48 4.70
843 2721 3.577667 TCACACCACGGTTAGATTTACG 58.422 45.455 0.00 0.00 0.00 3.18
852 2730 3.015516 GTGGAATCACACCACGGTT 57.984 52.632 0.00 0.00 46.15 4.44
853 2731 4.792087 GTGGAATCACACCACGGT 57.208 55.556 0.00 0.00 46.15 4.83
875 2757 7.906327 ACACATTTTATTAACAGCCTCCAAAT 58.094 30.769 0.00 0.00 0.00 2.32
918 2800 4.100084 CGCTGACAGATGGGCCCA 62.100 66.667 30.92 30.92 0.00 5.36
926 2808 0.678950 TTCCATGTGACGCTGACAGA 59.321 50.000 6.65 0.00 0.00 3.41
1012 2895 9.239551 AGGTTTAAGCGAGGTTTATTAATTTCT 57.760 29.630 0.00 0.00 0.00 2.52
1310 3199 1.001393 GAACAGGCCCGGATGGAAA 60.001 57.895 0.73 0.00 37.49 3.13
1382 3271 3.744719 CCGTCGAACAGGAGGCGA 61.745 66.667 0.00 0.00 0.00 5.54
1634 3523 3.619733 CGATGATGGAGTTGGTCAGGAAA 60.620 47.826 0.00 0.00 0.00 3.13
1665 3554 2.610976 CGTCAATCAACCCGTACTTGGA 60.611 50.000 5.40 0.00 0.00 3.53
1672 3561 0.320421 CACCTCGTCAATCAACCCGT 60.320 55.000 0.00 0.00 0.00 5.28
1677 3566 0.976641 AGCCTCACCTCGTCAATCAA 59.023 50.000 0.00 0.00 0.00 2.57
1739 3628 3.370231 TACGCCGACAGCAGCAGA 61.370 61.111 0.00 0.00 44.04 4.26
1857 3746 2.654079 CCTGGAGCTCGGAGCAAGT 61.654 63.158 29.88 11.33 45.56 3.16
2069 3958 2.651455 GGGCAAGGGTCATTACCTAAC 58.349 52.381 0.00 0.00 45.95 2.34
2090 3979 3.109619 GACAGCTTCGATTCTAACCTCG 58.890 50.000 0.00 0.00 36.25 4.63
2165 4054 2.351835 GCAGACTTCGAGCACACTCTTA 60.352 50.000 0.00 0.00 41.09 2.10
2324 4213 0.036732 TGGGTGTCATCTGGAAGCAC 59.963 55.000 0.00 0.00 0.00 4.40
2339 4228 1.296715 GACGACATCTTGCCTGGGT 59.703 57.895 0.00 0.00 0.00 4.51
2385 4274 3.441222 TGCTCAAAATTCTCATCATGCGT 59.559 39.130 0.00 0.00 0.00 5.24
2477 4366 0.100682 GAGCAGCACAGGCATTCATG 59.899 55.000 0.00 0.00 44.61 3.07
2538 4427 4.647564 ACTGACCAAGTCCAGATTTGAT 57.352 40.909 4.61 0.00 31.64 2.57
2552 4441 0.809636 CGCACACAGTGAACTGACCA 60.810 55.000 17.11 0.00 46.59 4.02
2743 4632 6.712095 AGCAATATCATTTATCACGACACCAT 59.288 34.615 0.00 0.00 0.00 3.55
2857 4748 7.518211 GCACTTTTTGAGAAACAACAAAACAGT 60.518 33.333 0.00 0.00 42.80 3.55
3089 4996 4.644234 TGTCTTTTTGGAGCAAGAATGTGA 59.356 37.500 0.00 0.00 30.76 3.58
3127 5034 4.035208 CCTAGGTTTGGCGCAAGTAAATAG 59.965 45.833 10.83 2.74 41.68 1.73
3128 5035 3.942748 CCTAGGTTTGGCGCAAGTAAATA 59.057 43.478 10.83 0.00 41.68 1.40
3129 5036 2.752903 CCTAGGTTTGGCGCAAGTAAAT 59.247 45.455 10.83 0.00 41.68 1.40
3185 5092 2.076100 CGCAAGCTACATTTCCAGTCA 58.924 47.619 0.00 0.00 0.00 3.41
3188 5095 2.483877 TGAACGCAAGCTACATTTCCAG 59.516 45.455 0.00 0.00 45.62 3.86
3274 5181 1.798813 GCGGTGTTACTTCAAGTCTGG 59.201 52.381 0.00 0.00 0.00 3.86
3369 5276 7.628235 CATCATACACTTTAGTTCTGAGCATG 58.372 38.462 0.00 0.00 0.00 4.06
4046 5955 3.607741 CATGTCTGGCAAGTGAGATCTT 58.392 45.455 0.00 0.00 0.00 2.40
4249 6158 8.997250 TCTACCAGTAGTCTCTGCAAGAGCAT 62.997 46.154 4.81 3.13 44.87 3.79
4302 6211 3.188667 CGCTGACCCTTCTAAGGTTTTTC 59.811 47.826 7.94 0.30 44.98 2.29
4303 6212 3.146847 CGCTGACCCTTCTAAGGTTTTT 58.853 45.455 7.94 0.00 44.98 1.94
4304 6213 2.552373 CCGCTGACCCTTCTAAGGTTTT 60.552 50.000 7.94 0.00 44.98 2.43
4567 6504 1.848388 TCACATCTCCAGCAATCCCAT 59.152 47.619 0.00 0.00 0.00 4.00
4709 6648 1.006281 TGCAGATGGGCCTCAGATTTT 59.994 47.619 4.53 0.00 0.00 1.82
4710 6649 0.627451 TGCAGATGGGCCTCAGATTT 59.373 50.000 4.53 0.00 0.00 2.17
4816 6756 2.093625 GTGTAGCGCATCATTCGTTTCA 59.906 45.455 11.47 0.00 0.00 2.69
4828 6768 0.038251 CTTGGTGAGAGTGTAGCGCA 60.038 55.000 11.47 0.00 0.00 6.09
4830 6770 2.164422 TCATCTTGGTGAGAGTGTAGCG 59.836 50.000 0.00 0.00 37.93 4.26
4912 6856 4.717991 TGCATAAACGTAGCATGTGTTTC 58.282 39.130 9.62 0.74 37.11 2.78
4962 6906 9.918630 GGTATATAAATGCAATTTCAGCTCAAT 57.081 29.630 0.00 0.00 44.81 2.57
5140 7096 7.126733 AGAGGCTAAATAGTTCTGACCTAAGA 58.873 38.462 0.00 0.00 0.00 2.10
5493 7450 6.158598 GCAATTTCAGTGTAAACATCATGGT 58.841 36.000 0.00 0.00 0.00 3.55
5513 7470 7.534723 AATAGCTGAAACATATCATGGCAAT 57.465 32.000 0.00 0.00 33.60 3.56
5790 7747 1.600023 TTTGCCAGAAGTTACCACGG 58.400 50.000 0.00 0.00 0.00 4.94
5820 7782 3.944650 CCCCATGTTGATATGTTTCGACA 59.055 43.478 0.00 0.00 42.68 4.35
5868 7830 6.597832 AATCCGTTTTCACCATTAAATCCA 57.402 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.