Multiple sequence alignment - TraesCS4A01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G348000 chr4A 100.000 3564 0 0 1 3564 625651586 625655149 0.000000e+00 6582.0
1 TraesCS4A01G348000 chr4A 84.132 1002 130 18 1545 2538 625538525 625539505 0.000000e+00 942.0
2 TraesCS4A01G348000 chr4A 75.850 1648 311 65 781 2384 624228056 624229660 0.000000e+00 758.0
3 TraesCS4A01G348000 chr4A 86.435 575 75 1 971 1545 625535893 625536464 8.400000e-176 627.0
4 TraesCS4A01G348000 chr4A 78.330 946 188 15 779 1715 625200876 625201813 2.370000e-166 595.0
5 TraesCS4A01G348000 chr4A 85.897 312 44 0 2227 2538 625483548 625483237 2.050000e-87 333.0
6 TraesCS4A01G348000 chr4A 85.802 162 19 4 1876 2035 625201988 625202147 6.120000e-38 169.0
7 TraesCS4A01G348000 chr4A 83.333 156 26 0 809 964 623337842 623337997 1.030000e-30 145.0
8 TraesCS4A01G348000 chr4A 100.000 53 0 0 2649 2701 625654185 625654237 8.140000e-17 99.0
9 TraesCS4A01G348000 chr4A 100.000 53 0 0 2600 2652 625654234 625654286 8.140000e-17 99.0
10 TraesCS4A01G348000 chr5B 94.505 1838 85 5 716 2538 685198991 685197155 0.000000e+00 2820.0
11 TraesCS4A01G348000 chr5B 86.021 1352 170 14 775 2115 685437901 685439244 0.000000e+00 1432.0
12 TraesCS4A01G348000 chr5B 75.748 1637 311 66 781 2374 686541896 686543489 0.000000e+00 745.0
13 TraesCS4A01G348000 chr5B 90.395 531 38 7 3043 3564 685196508 685195982 0.000000e+00 686.0
14 TraesCS4A01G348000 chr5B 74.495 1286 248 58 1120 2382 686474012 686472784 5.350000e-133 484.0
15 TraesCS4A01G348000 chr5B 90.975 277 21 3 2663 2935 685197084 685196808 1.560000e-98 370.0
16 TraesCS4A01G348000 chr5B 79.622 476 56 22 2923 3384 685236907 685236459 1.610000e-78 303.0
17 TraesCS4A01G348000 chr5B 83.283 329 37 9 340 657 685199406 685199085 1.620000e-73 287.0
18 TraesCS4A01G348000 chr5B 83.898 236 27 4 106 331 685200986 685200752 7.750000e-52 215.0
19 TraesCS4A01G348000 chr5B 73.166 477 97 26 1257 1713 689148687 689148222 3.710000e-30 143.0
20 TraesCS4A01G348000 chr5B 95.918 49 2 0 2539 2587 685197130 685197082 2.950000e-11 80.5
21 TraesCS4A01G348000 chr5D 74.080 652 117 36 1764 2396 544478952 544479570 1.670000e-53 220.0
22 TraesCS4A01G348000 chr3D 81.000 200 36 2 1855 2052 581537628 581537827 1.320000e-34 158.0
23 TraesCS4A01G348000 chr3A 81.481 189 34 1 1865 2052 716541195 716541007 1.710000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G348000 chr4A 625651586 625655149 3563 False 2260.000000 6582 100.0000 1 3564 3 chr4A.!!$F5 3563
1 TraesCS4A01G348000 chr4A 625535893 625539505 3612 False 784.500000 942 85.2835 971 2538 2 chr4A.!!$F4 1567
2 TraesCS4A01G348000 chr4A 624228056 624229660 1604 False 758.000000 758 75.8500 781 2384 1 chr4A.!!$F2 1603
3 TraesCS4A01G348000 chr4A 625200876 625202147 1271 False 382.000000 595 82.0660 779 2035 2 chr4A.!!$F3 1256
4 TraesCS4A01G348000 chr5B 685437901 685439244 1343 False 1432.000000 1432 86.0210 775 2115 1 chr5B.!!$F1 1340
5 TraesCS4A01G348000 chr5B 686541896 686543489 1593 False 745.000000 745 75.7480 781 2374 1 chr5B.!!$F2 1593
6 TraesCS4A01G348000 chr5B 685195982 685200986 5004 True 743.083333 2820 89.8290 106 3564 6 chr5B.!!$R4 3458
7 TraesCS4A01G348000 chr5B 686472784 686474012 1228 True 484.000000 484 74.4950 1120 2382 1 chr5B.!!$R2 1262
8 TraesCS4A01G348000 chr5D 544478952 544479570 618 False 220.000000 220 74.0800 1764 2396 1 chr5D.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 1932 0.107643 TGAACGGCACACCAGATTGA 59.892 50.0 0.0 0.00 34.57 2.57 F
622 1977 0.391597 GATCGTTCGGGGGCTATTCA 59.608 55.0 0.0 0.00 0.00 2.57 F
823 2240 0.741221 GGGTGAAGACAGGCTAAGCG 60.741 60.0 0.0 0.00 0.00 4.68 F
1021 2438 1.030457 GGAGGAAGCAATGGCATCTG 58.970 55.0 0.0 2.87 44.61 2.90 F
2201 5772 1.208706 TGTGGGTGAAGTGGAAGACA 58.791 50.0 0.0 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 5456 0.104671 TGTTGAAAGCTGGGCAAAGC 59.895 50.0 3.39 3.39 43.88 3.51 R
2408 5982 0.250234 GGCAGTGCACCATGAGTAGA 59.750 55.0 18.61 0.00 0.00 2.59 R
2411 5985 0.607489 GAAGGCAGTGCACCATGAGT 60.607 55.0 18.61 0.00 0.00 3.41 R
2482 6056 0.953471 TTTGGGGCGAGAATGTGTCG 60.953 55.0 0.00 0.00 40.50 4.35 R
3411 7213 0.174845 CAATCTGTTGCCATGCCTGG 59.825 55.0 3.22 3.22 46.17 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.964875 CCTGCGTGCGGTTTTGCT 61.965 61.111 0.00 0.00 35.36 3.91
25 26 2.026014 CTGCGTGCGGTTTTGCTT 59.974 55.556 0.00 0.00 35.36 3.91
26 27 2.278466 TGCGTGCGGTTTTGCTTG 60.278 55.556 0.00 0.00 35.36 4.01
27 28 3.691356 GCGTGCGGTTTTGCTTGC 61.691 61.111 0.00 0.00 35.36 4.01
28 29 2.026014 CGTGCGGTTTTGCTTGCT 59.974 55.556 0.00 0.00 35.36 3.91
29 30 2.295052 CGTGCGGTTTTGCTTGCTG 61.295 57.895 0.00 0.00 35.36 4.41
30 31 2.279385 TGCGGTTTTGCTTGCTGC 60.279 55.556 0.00 0.00 43.25 5.25
31 32 2.028043 GCGGTTTTGCTTGCTGCT 59.972 55.556 0.00 0.00 43.37 4.24
32 33 1.285641 GCGGTTTTGCTTGCTGCTA 59.714 52.632 0.00 0.00 43.37 3.49
33 34 1.003769 GCGGTTTTGCTTGCTGCTAC 61.004 55.000 0.00 0.00 43.37 3.58
34 35 0.387239 CGGTTTTGCTTGCTGCTACC 60.387 55.000 0.00 7.43 43.37 3.18
35 36 0.387239 GGTTTTGCTTGCTGCTACCG 60.387 55.000 0.00 0.00 43.37 4.02
36 37 0.387239 GTTTTGCTTGCTGCTACCGG 60.387 55.000 0.00 0.00 43.37 5.28
37 38 2.141122 TTTTGCTTGCTGCTACCGGC 62.141 55.000 0.00 0.00 43.83 6.13
40 41 4.451150 CTTGCTGCTACCGGCCGA 62.451 66.667 30.73 6.52 42.87 5.54
41 42 3.740128 CTTGCTGCTACCGGCCGAT 62.740 63.158 30.73 14.28 42.87 4.18
42 43 4.529219 TGCTGCTACCGGCCGATG 62.529 66.667 30.73 14.21 42.87 3.84
43 44 4.221422 GCTGCTACCGGCCGATGA 62.221 66.667 30.73 10.33 40.92 2.92
44 45 2.499205 CTGCTACCGGCCGATGAA 59.501 61.111 30.73 9.74 40.92 2.57
45 46 1.153449 CTGCTACCGGCCGATGAAA 60.153 57.895 30.73 8.27 40.92 2.69
46 47 0.742990 CTGCTACCGGCCGATGAAAA 60.743 55.000 30.73 6.46 40.92 2.29
47 48 0.321741 TGCTACCGGCCGATGAAAAA 60.322 50.000 30.73 2.34 40.92 1.94
69 70 7.858052 AAAAATAGCGCATTACAGAATATGC 57.142 32.000 11.47 0.00 42.82 3.14
70 71 6.808008 AAATAGCGCATTACAGAATATGCT 57.192 33.333 11.47 0.00 43.79 3.79
71 72 7.905604 AAATAGCGCATTACAGAATATGCTA 57.094 32.000 11.47 0.00 43.79 3.49
72 73 6.893958 ATAGCGCATTACAGAATATGCTAC 57.106 37.500 11.47 0.00 43.79 3.58
73 74 4.887748 AGCGCATTACAGAATATGCTACT 58.112 39.130 11.47 0.00 43.79 2.57
74 75 6.025749 AGCGCATTACAGAATATGCTACTA 57.974 37.500 11.47 0.00 43.79 1.82
75 76 6.096036 AGCGCATTACAGAATATGCTACTAG 58.904 40.000 11.47 0.00 43.79 2.57
76 77 5.220303 GCGCATTACAGAATATGCTACTAGC 60.220 44.000 0.30 0.61 43.79 3.42
77 78 5.003872 CGCATTACAGAATATGCTACTAGCG 59.996 44.000 3.59 0.00 46.26 4.26
78 79 5.289675 GCATTACAGAATATGCTACTAGCGG 59.710 44.000 3.59 0.00 46.26 5.52
79 80 3.305398 ACAGAATATGCTACTAGCGGC 57.695 47.619 3.59 0.00 46.26 6.53
80 81 2.254459 CAGAATATGCTACTAGCGGCG 58.746 52.381 0.51 0.51 46.26 6.46
81 82 0.992802 GAATATGCTACTAGCGGCGC 59.007 55.000 26.86 26.86 46.26 6.53
82 83 0.603569 AATATGCTACTAGCGGCGCT 59.396 50.000 37.84 37.84 46.26 5.92
83 84 1.460504 ATATGCTACTAGCGGCGCTA 58.539 50.000 36.03 36.03 46.26 4.26
84 85 1.460504 TATGCTACTAGCGGCGCTAT 58.539 50.000 38.07 28.40 46.26 2.97
85 86 1.460504 ATGCTACTAGCGGCGCTATA 58.539 50.000 38.07 28.06 46.26 1.31
86 87 0.803117 TGCTACTAGCGGCGCTATAG 59.197 55.000 38.07 33.91 46.26 1.31
87 88 0.523757 GCTACTAGCGGCGCTATAGC 60.524 60.000 37.08 37.08 40.54 2.97
122 123 3.057104 TCTGCGGTTTAACTTCATCGAGA 60.057 43.478 0.00 0.00 0.00 4.04
124 125 4.250464 TGCGGTTTAACTTCATCGAGAAT 58.750 39.130 0.00 0.00 35.25 2.40
132 133 9.535878 GTTTAACTTCATCGAGAATAGAGGAAT 57.464 33.333 0.00 0.00 39.60 3.01
143 144 4.041444 AGAATAGAGGAATCATCAGCCACC 59.959 45.833 0.00 0.00 0.00 4.61
153 154 0.892755 ATCAGCCACCTGCAACAATG 59.107 50.000 0.00 0.00 44.83 2.82
156 157 1.181098 AGCCACCTGCAACAATGGAC 61.181 55.000 8.89 2.01 44.83 4.02
170 171 4.329545 GGACCGTCCTGCCTGCAA 62.330 66.667 10.59 0.00 32.53 4.08
174 175 2.591429 CGTCCTGCCTGCAACACA 60.591 61.111 0.00 0.00 0.00 3.72
191 198 5.618561 CAACACACGCCTTAATTAGAGAAC 58.381 41.667 0.00 0.00 0.00 3.01
201 208 5.304614 CCTTAATTAGAGAACCCTCATCGGA 59.695 44.000 0.00 0.00 41.87 4.55
209 216 3.070734 AGAACCCTCATCGGATTGATCTG 59.929 47.826 0.00 0.00 34.13 2.90
210 217 1.696336 ACCCTCATCGGATTGATCTGG 59.304 52.381 0.00 0.00 34.13 3.86
213 224 1.002888 CTCATCGGATTGATCTGGGGG 59.997 57.143 0.00 0.00 34.13 5.40
229 240 0.467290 GGGGCATGGAGGCGAATAAA 60.467 55.000 0.00 0.00 45.36 1.40
231 242 0.312102 GGCATGGAGGCGAATAAAGC 59.688 55.000 0.00 0.00 33.57 3.51
235 246 3.144506 CATGGAGGCGAATAAAGCTGAT 58.855 45.455 0.00 0.00 34.52 2.90
237 248 3.995199 TGGAGGCGAATAAAGCTGATAG 58.005 45.455 0.00 0.00 34.52 2.08
274 285 0.831307 AAGTATGTTCCCTCTCCGGC 59.169 55.000 0.00 0.00 0.00 6.13
275 286 1.049289 AGTATGTTCCCTCTCCGGCC 61.049 60.000 0.00 0.00 0.00 6.13
277 288 0.399949 TATGTTCCCTCTCCGGCCAT 60.400 55.000 2.24 0.00 0.00 4.40
335 346 8.940768 AATTTCTCTTCTTACAGAGCTATGTC 57.059 34.615 18.93 0.00 40.33 3.06
336 347 7.710676 TTTCTCTTCTTACAGAGCTATGTCT 57.289 36.000 18.93 0.00 40.33 3.41
338 349 7.328277 TCTCTTCTTACAGAGCTATGTCTTC 57.672 40.000 18.93 0.00 40.33 2.87
347 1694 6.568869 ACAGAGCTATGTCTTCAACTCATAC 58.431 40.000 8.51 0.00 0.00 2.39
367 1715 7.929959 TCATACCTAGGAGTATATGCTAGTGT 58.070 38.462 17.98 3.76 45.87 3.55
368 1716 9.054580 TCATACCTAGGAGTATATGCTAGTGTA 57.945 37.037 17.98 5.42 45.87 2.90
369 1717 9.111613 CATACCTAGGAGTATATGCTAGTGTAC 57.888 40.741 17.98 0.00 45.87 2.90
370 1718 7.332433 ACCTAGGAGTATATGCTAGTGTACT 57.668 40.000 17.98 0.00 45.87 2.73
371 1719 7.757611 ACCTAGGAGTATATGCTAGTGTACTT 58.242 38.462 17.98 0.00 45.87 2.24
372 1720 7.666388 ACCTAGGAGTATATGCTAGTGTACTTG 59.334 40.741 17.98 0.00 45.87 3.16
402 1755 7.092716 TCTAACAAGTTTGTATAAGGACGGAC 58.907 38.462 0.00 0.00 41.31 4.79
403 1756 5.217978 ACAAGTTTGTATAAGGACGGACA 57.782 39.130 0.00 0.00 40.16 4.02
430 1783 7.885297 AGATTTTTAGTTTGTGCATGCTCTTA 58.115 30.769 20.33 5.20 0.00 2.10
469 1822 0.521242 GCGTCGTGTTGATGAATGGC 60.521 55.000 0.00 0.00 35.48 4.40
490 1843 4.142093 GGCAAATCAATCTAGCAACATGGT 60.142 41.667 0.00 0.00 0.00 3.55
493 1847 5.991328 AATCAATCTAGCAACATGGTACG 57.009 39.130 0.00 0.00 0.00 3.67
500 1854 3.052455 AGCAACATGGTACGAACATGA 57.948 42.857 19.73 0.00 46.60 3.07
505 1859 5.060816 GCAACATGGTACGAACATGATTTTG 59.939 40.000 19.73 15.37 46.60 2.44
507 1861 6.182039 ACATGGTACGAACATGATTTTGAG 57.818 37.500 19.73 0.00 46.60 3.02
513 1867 5.633830 ACGAACATGATTTTGAGCTCAAT 57.366 34.783 28.89 16.01 35.55 2.57
552 1907 5.405571 ACGAATATAAATGCATGTCCTCGAC 59.594 40.000 17.60 0.00 0.00 4.20
553 1908 5.443301 CGAATATAAATGCATGTCCTCGACG 60.443 44.000 0.00 0.00 34.95 5.12
566 1921 2.355363 CGACGAACCTGAACGGCA 60.355 61.111 0.00 0.00 37.38 5.69
568 1923 1.593209 GACGAACCTGAACGGCACA 60.593 57.895 0.00 0.00 37.49 4.57
575 1930 0.606401 CCTGAACGGCACACCAGATT 60.606 55.000 0.00 0.00 34.57 2.40
576 1931 0.518636 CTGAACGGCACACCAGATTG 59.481 55.000 0.00 0.00 34.57 2.67
577 1932 0.107643 TGAACGGCACACCAGATTGA 59.892 50.000 0.00 0.00 34.57 2.57
580 1935 1.302431 CGGCACACCAGATTGACCA 60.302 57.895 0.00 0.00 34.57 4.02
583 1938 1.340405 GGCACACCAGATTGACCAGAT 60.340 52.381 0.00 0.00 35.26 2.90
587 1942 3.055167 CACACCAGATTGACCAGATACCA 60.055 47.826 0.00 0.00 0.00 3.25
602 1957 2.579207 TACCAATAGCGAGTGTGCTC 57.421 50.000 0.00 0.00 45.87 4.26
611 1966 2.270091 GAGTGTGCTCGATCGTTCG 58.730 57.895 15.94 9.59 46.87 3.95
614 1969 2.582498 GTGCTCGATCGTTCGGGG 60.582 66.667 16.94 10.65 46.25 5.73
621 1976 0.666577 CGATCGTTCGGGGGCTATTC 60.667 60.000 7.03 0.00 41.74 1.75
622 1977 0.391597 GATCGTTCGGGGGCTATTCA 59.608 55.000 0.00 0.00 0.00 2.57
644 2002 3.146066 GCCTCATCCAACAGTTTACACA 58.854 45.455 0.00 0.00 0.00 3.72
646 2004 4.389374 CCTCATCCAACAGTTTACACACT 58.611 43.478 0.00 0.00 0.00 3.55
648 2006 6.173339 CCTCATCCAACAGTTTACACACTAT 58.827 40.000 0.00 0.00 0.00 2.12
654 2012 7.327975 TCCAACAGTTTACACACTATATGGAG 58.672 38.462 0.00 0.00 31.73 3.86
664 2075 6.418101 ACACACTATATGGAGCATTGTTCTT 58.582 36.000 0.37 0.00 0.00 2.52
691 2102 6.576662 TCTAAAACAAGAGATCGAGAGTGT 57.423 37.500 0.00 0.00 0.00 3.55
693 2104 7.085116 TCTAAAACAAGAGATCGAGAGTGTTC 58.915 38.462 0.00 0.00 0.00 3.18
697 2108 5.848406 ACAAGAGATCGAGAGTGTTCTTTT 58.152 37.500 0.00 0.00 32.53 2.27
698 2109 6.284459 ACAAGAGATCGAGAGTGTTCTTTTT 58.716 36.000 0.00 0.00 32.53 1.94
728 2139 4.391405 AACAAGAGTTTTTCTGCTTGGG 57.609 40.909 0.00 0.00 41.41 4.12
806 2223 8.565896 TTATATATGTTGCAGCAAATAGAGGG 57.434 34.615 10.11 0.00 0.00 4.30
819 2236 3.689872 ATAGAGGGTGAAGACAGGCTA 57.310 47.619 0.00 0.00 0.00 3.93
823 2240 0.741221 GGGTGAAGACAGGCTAAGCG 60.741 60.000 0.00 0.00 0.00 4.68
848 2265 3.719924 TGACCGACGATGTTTTACTGTT 58.280 40.909 0.00 0.00 0.00 3.16
877 2294 2.604914 GGAAGAGTCGATACACGTACGA 59.395 50.000 24.41 0.00 43.13 3.43
1021 2438 1.030457 GGAGGAAGCAATGGCATCTG 58.970 55.000 0.00 2.87 44.61 2.90
1188 2606 6.703607 TGAAAGATTTAGATCTCGCCATTCTC 59.296 38.462 0.00 0.00 41.78 2.87
1409 2838 4.019411 TGAGTGTGATATTGGTGGTGATGT 60.019 41.667 0.00 0.00 0.00 3.06
1478 2907 3.929610 GAGCTCACTAAGTGTGGCTTTAG 59.070 47.826 9.40 0.00 45.95 1.85
1540 2970 8.400186 AGTTCAATTTGAATTCTTGGCTTTTTG 58.600 29.630 14.54 0.77 38.79 2.44
1556 5046 4.561326 GCTTTTTGACTATGTGCCATTGGT 60.561 41.667 4.26 0.00 0.00 3.67
1602 5092 9.239002 CTTGGAGAATTAGAACTCATAAGTACG 57.761 37.037 0.00 0.00 33.48 3.67
1655 5148 6.554982 AGTGAGCTTCTATATGGAACCACATA 59.445 38.462 18.05 0.00 37.69 2.29
1721 5216 9.554724 GAGTTATATTTCATTTTTGCGAAGTGA 57.445 29.630 0.00 0.97 0.00 3.41
1843 5339 2.550830 AACGTCATTTCTGTGCTCCT 57.449 45.000 0.00 0.00 0.00 3.69
1902 5452 4.491676 CTTTGGATGCAACCTGAAATGAG 58.508 43.478 14.77 0.00 0.00 2.90
1906 5456 1.250328 TGCAACCTGAAATGAGGCAG 58.750 50.000 0.00 0.00 36.46 4.85
1947 5497 3.287222 AGCTAAGGAAGTTGTTTGTGCA 58.713 40.909 0.00 0.00 0.00 4.57
2040 5599 9.941664 GATGTTACATATTGAGGTGATTTCTTG 57.058 33.333 0.00 0.00 0.00 3.02
2061 5620 9.638239 TTCTTGGTAATTATGTTGCATTTCTTC 57.362 29.630 0.00 0.00 0.00 2.87
2201 5772 1.208706 TGTGGGTGAAGTGGAAGACA 58.791 50.000 0.00 0.00 0.00 3.41
2224 5795 6.367969 ACAATTATAGACGACAGAACAACACC 59.632 38.462 0.00 0.00 0.00 4.16
2248 5819 1.364328 AGAAGGACTCCTCAGTGGGAT 59.636 52.381 0.00 0.00 34.56 3.85
2267 5841 2.983907 TGTGGACTTTAACGACACCA 57.016 45.000 0.00 0.00 0.00 4.17
2312 5886 4.015084 AGAATTCATTGGCTTCAGGTCAG 58.985 43.478 8.44 0.00 0.00 3.51
2389 5963 9.896645 TTGCATAAGATAGTTCTGAAAAGAGAT 57.103 29.630 0.00 0.00 30.72 2.75
2408 5982 9.458727 AAAGAGATGATGAATGTGACTTATGTT 57.541 29.630 0.00 0.00 0.00 2.71
2411 5985 9.755804 GAGATGATGAATGTGACTTATGTTCTA 57.244 33.333 0.00 0.00 0.00 2.10
2482 6056 4.876125 TGATCATGAGGCGAATTAGAGAC 58.124 43.478 0.09 0.00 0.00 3.36
2484 6058 2.949644 TCATGAGGCGAATTAGAGACGA 59.050 45.455 0.00 0.00 0.00 4.20
2487 6061 2.159421 TGAGGCGAATTAGAGACGACAC 60.159 50.000 0.00 0.00 37.53 3.67
2544 6142 2.841442 AGGAGACGAAGAACCTTTGG 57.159 50.000 0.00 0.00 0.00 3.28
2578 6176 3.125656 TGGATGAGGGAGAAATGGTCAT 58.874 45.455 0.00 0.00 0.00 3.06
2584 6182 3.192944 AGGGAGAAATGGTCATCAGGAA 58.807 45.455 0.00 0.00 0.00 3.36
2585 6183 3.593328 AGGGAGAAATGGTCATCAGGAAA 59.407 43.478 0.00 0.00 0.00 3.13
2586 6184 4.044571 AGGGAGAAATGGTCATCAGGAAAA 59.955 41.667 0.00 0.00 0.00 2.29
2587 6185 4.772100 GGGAGAAATGGTCATCAGGAAAAA 59.228 41.667 0.00 0.00 0.00 1.94
2588 6186 5.423290 GGGAGAAATGGTCATCAGGAAAAAT 59.577 40.000 0.00 0.00 0.00 1.82
2589 6187 6.070596 GGGAGAAATGGTCATCAGGAAAAATT 60.071 38.462 0.00 0.00 0.00 1.82
2590 6188 7.124147 GGGAGAAATGGTCATCAGGAAAAATTA 59.876 37.037 0.00 0.00 0.00 1.40
2591 6189 8.193438 GGAGAAATGGTCATCAGGAAAAATTAG 58.807 37.037 0.00 0.00 0.00 1.73
2592 6190 8.884124 AGAAATGGTCATCAGGAAAAATTAGA 57.116 30.769 0.00 0.00 0.00 2.10
2593 6191 8.964772 AGAAATGGTCATCAGGAAAAATTAGAG 58.035 33.333 0.00 0.00 0.00 2.43
2594 6192 8.884124 AAATGGTCATCAGGAAAAATTAGAGA 57.116 30.769 0.00 0.00 0.00 3.10
2595 6193 9.484806 AAATGGTCATCAGGAAAAATTAGAGAT 57.515 29.630 0.00 0.00 0.00 2.75
2596 6194 7.870509 TGGTCATCAGGAAAAATTAGAGATG 57.129 36.000 0.00 0.00 34.30 2.90
2597 6195 6.830324 TGGTCATCAGGAAAAATTAGAGATGG 59.170 38.462 0.00 0.00 33.92 3.51
2598 6196 6.238869 GGTCATCAGGAAAAATTAGAGATGGC 60.239 42.308 0.00 0.00 36.27 4.40
2599 6197 6.319658 GTCATCAGGAAAAATTAGAGATGGCA 59.680 38.462 0.00 0.00 36.81 4.92
2600 6198 7.014038 GTCATCAGGAAAAATTAGAGATGGCAT 59.986 37.037 0.00 0.00 36.81 4.40
2601 6199 8.219868 TCATCAGGAAAAATTAGAGATGGCATA 58.780 33.333 0.00 0.00 33.92 3.14
2602 6200 9.021807 CATCAGGAAAAATTAGAGATGGCATAT 57.978 33.333 0.00 0.00 0.00 1.78
2603 6201 9.597681 ATCAGGAAAAATTAGAGATGGCATATT 57.402 29.630 0.00 0.00 0.00 1.28
2604 6202 9.425248 TCAGGAAAAATTAGAGATGGCATATTT 57.575 29.630 0.00 0.00 0.00 1.40
2605 6203 9.688592 CAGGAAAAATTAGAGATGGCATATTTC 57.311 33.333 0.00 0.00 0.00 2.17
2606 6204 9.652114 AGGAAAAATTAGAGATGGCATATTTCT 57.348 29.630 0.00 6.91 0.00 2.52
2607 6205 9.905171 GGAAAAATTAGAGATGGCATATTTCTC 57.095 33.333 0.00 3.57 36.88 2.87
2608 6206 9.604626 GAAAAATTAGAGATGGCATATTTCTCG 57.395 33.333 0.00 0.00 40.62 4.04
2609 6207 6.734104 AATTAGAGATGGCATATTTCTCGC 57.266 37.500 0.00 0.00 40.62 5.03
2610 6208 3.051081 AGAGATGGCATATTTCTCGCC 57.949 47.619 0.00 0.00 46.43 5.54
2611 6209 2.636893 AGAGATGGCATATTTCTCGCCT 59.363 45.455 0.00 0.00 46.39 5.52
2612 6210 2.999355 GAGATGGCATATTTCTCGCCTC 59.001 50.000 0.00 0.00 46.39 4.70
2619 6217 4.202050 GGCATATTTCTCGCCTCAAATGTT 60.202 41.667 0.00 0.00 42.78 2.71
2648 6246 7.003482 TGATGGATAAATTGTAGCAAGGCATA 58.997 34.615 0.00 0.00 0.00 3.14
2652 6250 9.532494 TGGATAAATTGTAGCAAGGCATATATT 57.468 29.630 0.00 0.00 0.00 1.28
2657 6255 6.785488 TTGTAGCAAGGCATATATTTCTCG 57.215 37.500 0.00 0.00 0.00 4.04
2658 6256 4.690748 TGTAGCAAGGCATATATTTCTCGC 59.309 41.667 0.00 0.00 0.00 5.03
2659 6257 3.077359 AGCAAGGCATATATTTCTCGCC 58.923 45.455 3.36 3.36 43.31 5.54
2665 6263 5.886960 GGCATATATTTCTCGCCTCAAAT 57.113 39.130 4.21 0.00 39.73 2.32
2666 6264 5.634896 GGCATATATTTCTCGCCTCAAATG 58.365 41.667 4.21 0.00 39.73 2.32
2667 6265 5.182001 GGCATATATTTCTCGCCTCAAATGT 59.818 40.000 4.21 0.00 39.73 2.71
2668 6266 6.294176 GGCATATATTTCTCGCCTCAAATGTT 60.294 38.462 4.21 0.00 39.73 2.71
2669 6267 7.141363 GCATATATTTCTCGCCTCAAATGTTT 58.859 34.615 0.00 0.00 0.00 2.83
2670 6268 7.649306 GCATATATTTCTCGCCTCAAATGTTTT 59.351 33.333 0.00 0.00 0.00 2.43
2671 6269 9.520204 CATATATTTCTCGCCTCAAATGTTTTT 57.480 29.630 0.00 0.00 0.00 1.94
2694 6292 5.772825 TGATGGATAAATTGTAGCAAGGC 57.227 39.130 0.00 0.00 0.00 4.35
2695 6293 5.199723 TGATGGATAAATTGTAGCAAGGCA 58.800 37.500 0.00 0.00 0.00 4.75
2696 6294 5.834742 TGATGGATAAATTGTAGCAAGGCAT 59.165 36.000 0.00 0.00 0.00 4.40
2697 6295 7.003482 TGATGGATAAATTGTAGCAAGGCATA 58.997 34.615 0.00 0.00 0.00 3.14
2698 6296 7.670979 TGATGGATAAATTGTAGCAAGGCATAT 59.329 33.333 0.00 0.00 0.00 1.78
2699 6297 9.177608 GATGGATAAATTGTAGCAAGGCATATA 57.822 33.333 0.00 0.00 0.00 0.86
2700 6298 9.705103 ATGGATAAATTGTAGCAAGGCATATAT 57.295 29.630 0.00 0.00 0.00 0.86
2741 6339 5.957798 TGATACGTAAGGTGTAGGAAACAG 58.042 41.667 0.00 0.00 46.39 3.16
2745 6343 6.160576 ACGTAAGGTGTAGGAAACAGTTTA 57.839 37.500 0.00 0.00 46.39 2.01
2784 6382 2.210961 TGTTATGTTTTGGACGTCGCA 58.789 42.857 9.92 6.05 0.00 5.10
2804 6402 7.097289 CGTCGCAATTGCTAATAAGATTTCTTG 60.097 37.037 26.86 6.66 39.32 3.02
2827 6426 7.218228 TGTGCTGAATATGATCACAAAGTTT 57.782 32.000 0.00 0.00 35.08 2.66
2835 6434 9.495754 GAATATGATCACAAAGTTTAGTCTTGC 57.504 33.333 0.00 0.00 0.00 4.01
2838 6437 6.902341 TGATCACAAAGTTTAGTCTTGCATC 58.098 36.000 0.00 0.00 0.00 3.91
2842 6441 6.989759 TCACAAAGTTTAGTCTTGCATCTGTA 59.010 34.615 0.00 0.00 0.00 2.74
2863 6462 8.835439 TCTGTATTGCGCAATCAAGAAAATATA 58.165 29.630 36.99 13.97 32.50 0.86
2893 6492 6.867519 TGTTCACTGTGAAATATAGGGAGA 57.132 37.500 23.55 0.00 38.22 3.71
2894 6493 6.640518 TGTTCACTGTGAAATATAGGGAGAC 58.359 40.000 23.55 8.99 38.22 3.36
2904 6506 9.444600 GTGAAATATAGGGAGACAAGTAAACAA 57.555 33.333 0.00 0.00 0.00 2.83
2935 6537 1.784525 AACGTGTGCTAGCACTCTTC 58.215 50.000 39.44 26.78 46.30 2.87
2936 6538 0.673985 ACGTGTGCTAGCACTCTTCA 59.326 50.000 39.44 22.41 46.30 3.02
2937 6539 1.336332 ACGTGTGCTAGCACTCTTCAG 60.336 52.381 39.44 26.95 46.30 3.02
2938 6540 1.719600 GTGTGCTAGCACTCTTCAGG 58.280 55.000 39.44 0.00 46.30 3.86
2939 6541 1.273606 GTGTGCTAGCACTCTTCAGGA 59.726 52.381 39.44 20.32 46.30 3.86
2940 6542 2.093764 GTGTGCTAGCACTCTTCAGGAT 60.094 50.000 39.44 0.00 46.30 3.24
2941 6543 2.093816 TGTGCTAGCACTCTTCAGGATG 60.094 50.000 39.44 0.00 46.30 3.51
2942 6544 2.167281 GTGCTAGCACTCTTCAGGATGA 59.833 50.000 35.25 0.00 43.24 2.92
2943 6545 3.982775 GTGCTAGCACTCTTCAGGATGAC 60.983 52.174 35.25 8.41 44.04 3.06
2944 6546 6.182105 GTGCTAGCACTCTTCAGGATGACT 62.182 50.000 35.25 0.00 44.04 3.41
2945 6547 6.895039 GTGCTAGCACTCTTCAGGATGACTA 61.895 48.000 35.25 0.00 44.04 2.59
2946 6548 8.817105 GTGCTAGCACTCTTCAGGATGACTAC 62.817 50.000 35.25 7.04 44.04 2.73
2960 6562 8.041323 TCAGGATGACTACAAAACTCTAAATCC 58.959 37.037 0.00 0.00 42.56 3.01
2961 6563 7.824289 CAGGATGACTACAAAACTCTAAATCCA 59.176 37.037 0.00 0.00 39.69 3.41
2962 6564 8.043710 AGGATGACTACAAAACTCTAAATCCAG 58.956 37.037 0.00 0.00 33.75 3.86
2963 6565 7.201652 GGATGACTACAAAACTCTAAATCCAGC 60.202 40.741 0.00 0.00 32.02 4.85
2964 6566 6.769512 TGACTACAAAACTCTAAATCCAGCT 58.230 36.000 0.00 0.00 0.00 4.24
2965 6567 6.650807 TGACTACAAAACTCTAAATCCAGCTG 59.349 38.462 6.78 6.78 0.00 4.24
2966 6568 6.769512 ACTACAAAACTCTAAATCCAGCTGA 58.230 36.000 17.39 1.21 0.00 4.26
2967 6569 7.224297 ACTACAAAACTCTAAATCCAGCTGAA 58.776 34.615 17.39 0.00 0.00 3.02
2968 6570 6.959639 ACAAAACTCTAAATCCAGCTGAAA 57.040 33.333 17.39 2.78 0.00 2.69
2969 6571 6.974965 ACAAAACTCTAAATCCAGCTGAAAG 58.025 36.000 17.39 4.91 0.00 2.62
2985 6587 5.613358 CTGAAAGCCTAGAACATCGTTTT 57.387 39.130 0.00 0.00 0.00 2.43
2986 6588 6.721571 CTGAAAGCCTAGAACATCGTTTTA 57.278 37.500 0.00 0.00 0.00 1.52
2987 6589 7.129109 CTGAAAGCCTAGAACATCGTTTTAA 57.871 36.000 0.00 0.00 0.00 1.52
2988 6590 7.499321 TGAAAGCCTAGAACATCGTTTTAAA 57.501 32.000 0.00 0.00 0.00 1.52
2989 6591 7.932335 TGAAAGCCTAGAACATCGTTTTAAAA 58.068 30.769 0.00 0.00 0.00 1.52
2990 6592 7.858879 TGAAAGCCTAGAACATCGTTTTAAAAC 59.141 33.333 19.15 19.15 35.59 2.43
2991 6593 7.506328 AAGCCTAGAACATCGTTTTAAAACT 57.494 32.000 24.57 9.10 36.77 2.66
2992 6594 7.506328 AGCCTAGAACATCGTTTTAAAACTT 57.494 32.000 24.57 14.31 36.77 2.66
2993 6595 7.937649 AGCCTAGAACATCGTTTTAAAACTTT 58.062 30.769 24.57 14.01 36.77 2.66
2994 6596 7.860872 AGCCTAGAACATCGTTTTAAAACTTTG 59.139 33.333 24.57 22.01 36.77 2.77
2995 6597 7.114388 GCCTAGAACATCGTTTTAAAACTTTGG 59.886 37.037 24.57 15.12 36.77 3.28
2996 6598 7.593644 CCTAGAACATCGTTTTAAAACTTTGGG 59.406 37.037 24.57 14.59 36.77 4.12
2997 6599 6.277605 AGAACATCGTTTTAAAACTTTGGGG 58.722 36.000 24.57 11.12 36.77 4.96
2998 6600 4.951254 ACATCGTTTTAAAACTTTGGGGG 58.049 39.130 24.57 10.51 36.77 5.40
3012 6614 4.863415 GGGGGAAAAGCCATCACA 57.137 55.556 0.00 0.00 38.95 3.58
3013 6615 3.065462 GGGGGAAAAGCCATCACAA 57.935 52.632 0.00 0.00 38.95 3.33
3014 6616 1.571955 GGGGGAAAAGCCATCACAAT 58.428 50.000 0.00 0.00 38.95 2.71
3015 6617 1.908619 GGGGGAAAAGCCATCACAATT 59.091 47.619 0.00 0.00 38.95 2.32
3016 6618 2.093500 GGGGGAAAAGCCATCACAATTC 60.093 50.000 0.00 0.00 38.95 2.17
3017 6619 2.833943 GGGGAAAAGCCATCACAATTCT 59.166 45.455 0.00 0.00 38.95 2.40
3018 6620 3.261643 GGGGAAAAGCCATCACAATTCTT 59.738 43.478 0.00 0.00 38.95 2.52
3019 6621 4.248058 GGGAAAAGCCATCACAATTCTTG 58.752 43.478 0.00 0.00 38.95 3.02
3020 6622 4.021192 GGGAAAAGCCATCACAATTCTTGA 60.021 41.667 0.00 0.00 38.95 3.02
3021 6623 5.511202 GGGAAAAGCCATCACAATTCTTGAA 60.511 40.000 0.00 0.00 38.95 2.69
3022 6624 5.990996 GGAAAAGCCATCACAATTCTTGAAA 59.009 36.000 0.00 0.00 36.34 2.69
3023 6625 6.652062 GGAAAAGCCATCACAATTCTTGAAAT 59.348 34.615 0.00 0.00 36.34 2.17
3024 6626 7.148523 GGAAAAGCCATCACAATTCTTGAAATC 60.149 37.037 0.00 0.00 36.34 2.17
3025 6627 4.990257 AGCCATCACAATTCTTGAAATCG 58.010 39.130 0.00 0.00 0.00 3.34
3026 6628 4.107622 GCCATCACAATTCTTGAAATCGG 58.892 43.478 0.00 0.00 0.00 4.18
3027 6629 4.107622 CCATCACAATTCTTGAAATCGGC 58.892 43.478 0.00 0.00 0.00 5.54
3028 6630 4.380761 CCATCACAATTCTTGAAATCGGCA 60.381 41.667 0.00 0.00 0.00 5.69
3029 6631 4.159377 TCACAATTCTTGAAATCGGCAC 57.841 40.909 0.00 0.00 0.00 5.01
3030 6632 3.567585 TCACAATTCTTGAAATCGGCACA 59.432 39.130 0.00 0.00 0.00 4.57
3031 6633 4.037327 TCACAATTCTTGAAATCGGCACAA 59.963 37.500 0.00 0.00 0.00 3.33
3032 6634 4.744137 CACAATTCTTGAAATCGGCACAAA 59.256 37.500 0.00 0.00 0.00 2.83
3033 6635 5.233902 CACAATTCTTGAAATCGGCACAAAA 59.766 36.000 0.00 0.00 0.00 2.44
3034 6636 5.814705 ACAATTCTTGAAATCGGCACAAAAA 59.185 32.000 0.00 0.00 0.00 1.94
3108 6905 2.857186 TGCCATCACACTAGCAGAAA 57.143 45.000 0.00 0.00 0.00 2.52
3109 6906 3.138884 TGCCATCACACTAGCAGAAAA 57.861 42.857 0.00 0.00 0.00 2.29
3110 6907 3.485394 TGCCATCACACTAGCAGAAAAA 58.515 40.909 0.00 0.00 0.00 1.94
3123 6920 7.119699 CACTAGCAGAAAAACATGTATCCAGAA 59.880 37.037 0.00 0.00 0.00 3.02
3125 6922 6.917533 AGCAGAAAAACATGTATCCAGAAAG 58.082 36.000 0.00 0.00 0.00 2.62
3151 6948 2.764010 ACGGGAGACATTGTGTAGCATA 59.236 45.455 0.00 0.00 0.00 3.14
3256 7054 5.797051 TCAACAAGATCTCACATGATGACA 58.203 37.500 0.00 0.00 32.37 3.58
3278 7076 6.283694 ACATACATCATAACGAGCAAGTCAT 58.716 36.000 0.00 0.00 0.00 3.06
3279 7077 6.201615 ACATACATCATAACGAGCAAGTCATG 59.798 38.462 0.00 0.00 0.00 3.07
3294 7092 5.739070 GCAAGTCATGGTCGGATAACATCTA 60.739 44.000 0.00 0.00 0.00 1.98
3302 7100 9.091784 CATGGTCGGATAACATCTATAGAAATG 57.908 37.037 6.52 4.15 0.00 2.32
3364 7166 4.270566 GCAAGTTGATGCAACATTTGACAA 59.729 37.500 19.25 0.00 45.66 3.18
3375 7177 6.370994 TGCAACATTTGACAATTCAAGTTTGT 59.629 30.769 0.00 0.00 42.79 2.83
3387 7189 2.165437 TCAAGTTTGTTTCAGCCACACC 59.835 45.455 0.00 0.00 0.00 4.16
3411 7213 0.868406 GCCTAGCATTACGGCATCAC 59.132 55.000 0.00 0.00 43.25 3.06
3435 7237 3.266964 TGGCAACAGATTGAGCGC 58.733 55.556 0.00 0.00 46.17 5.92
3508 7311 2.550606 GTGCGGTGGTAAACTTCATCAA 59.449 45.455 0.00 0.00 0.00 2.57
3510 7313 2.412325 GCGGTGGTAAACTTCATCAACG 60.412 50.000 0.00 0.00 40.92 4.10
3515 7318 3.244422 TGGTAAACTTCATCAACGGAGCT 60.244 43.478 0.00 0.00 0.00 4.09
3524 7327 2.270352 TCAACGGAGCTGATTTTGGT 57.730 45.000 0.00 0.00 0.00 3.67
3529 7332 3.751518 ACGGAGCTGATTTTGGTTACTT 58.248 40.909 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.483235 AAGCAAAACCGCACGCAGG 62.483 57.895 0.00 0.00 0.00 4.85
8 9 2.026014 AAGCAAAACCGCACGCAG 59.974 55.556 0.00 0.00 0.00 5.18
9 10 2.278466 CAAGCAAAACCGCACGCA 60.278 55.556 0.00 0.00 0.00 5.24
10 11 3.691356 GCAAGCAAAACCGCACGC 61.691 61.111 0.00 0.00 0.00 5.34
11 12 2.026014 AGCAAGCAAAACCGCACG 59.974 55.556 0.00 0.00 0.00 5.34
12 13 2.588585 GCAGCAAGCAAAACCGCAC 61.589 57.895 0.00 0.00 44.79 5.34
13 14 2.279385 GCAGCAAGCAAAACCGCA 60.279 55.556 0.00 0.00 44.79 5.69
23 24 3.740128 ATCGGCCGGTAGCAGCAAG 62.740 63.158 27.83 0.00 46.50 4.01
24 25 3.781307 ATCGGCCGGTAGCAGCAA 61.781 61.111 27.83 1.69 46.50 3.91
25 26 4.529219 CATCGGCCGGTAGCAGCA 62.529 66.667 27.83 2.60 46.50 4.41
26 27 3.733344 TTCATCGGCCGGTAGCAGC 62.733 63.158 27.83 0.00 46.50 5.25
27 28 0.742990 TTTTCATCGGCCGGTAGCAG 60.743 55.000 27.83 6.14 46.50 4.24
28 29 0.321741 TTTTTCATCGGCCGGTAGCA 60.322 50.000 27.83 5.39 46.50 3.49
29 30 2.473457 TTTTTCATCGGCCGGTAGC 58.527 52.632 27.83 0.00 42.60 3.58
45 46 7.858052 GCATATTCTGTAATGCGCTATTTTT 57.142 32.000 9.73 0.00 39.15 1.94
55 56 5.289675 GCCGCTAGTAGCATATTCTGTAATG 59.710 44.000 21.70 0.87 42.58 1.90
56 57 5.411781 GCCGCTAGTAGCATATTCTGTAAT 58.588 41.667 21.70 0.00 42.58 1.89
57 58 4.615223 CGCCGCTAGTAGCATATTCTGTAA 60.615 45.833 21.70 0.00 42.58 2.41
58 59 3.119955 CGCCGCTAGTAGCATATTCTGTA 60.120 47.826 21.70 0.00 42.58 2.74
59 60 2.351835 CGCCGCTAGTAGCATATTCTGT 60.352 50.000 21.70 0.00 42.58 3.41
60 61 2.254459 CGCCGCTAGTAGCATATTCTG 58.746 52.381 21.70 3.67 42.58 3.02
61 62 1.402984 GCGCCGCTAGTAGCATATTCT 60.403 52.381 21.70 0.00 42.58 2.40
62 63 0.992802 GCGCCGCTAGTAGCATATTC 59.007 55.000 21.70 4.81 42.58 1.75
63 64 0.603569 AGCGCCGCTAGTAGCATATT 59.396 50.000 21.70 0.57 42.58 1.28
64 65 1.460504 TAGCGCCGCTAGTAGCATAT 58.539 50.000 15.99 5.44 42.58 1.78
65 66 1.460504 ATAGCGCCGCTAGTAGCATA 58.539 50.000 24.26 0.00 44.66 3.14
66 67 1.402259 CTATAGCGCCGCTAGTAGCAT 59.598 52.381 24.26 9.91 44.66 3.79
67 68 0.803117 CTATAGCGCCGCTAGTAGCA 59.197 55.000 24.26 1.63 44.66 3.49
68 69 0.523757 GCTATAGCGCCGCTAGTAGC 60.524 60.000 27.92 27.92 44.66 3.58
69 70 3.607777 GCTATAGCGCCGCTAGTAG 57.392 57.895 24.26 22.30 44.66 2.57
96 97 5.007823 TCGATGAAGTTAAACCGCAGAAAAA 59.992 36.000 0.00 0.00 0.00 1.94
97 98 4.512198 TCGATGAAGTTAAACCGCAGAAAA 59.488 37.500 0.00 0.00 0.00 2.29
98 99 4.059511 TCGATGAAGTTAAACCGCAGAAA 58.940 39.130 0.00 0.00 0.00 2.52
99 100 3.655486 TCGATGAAGTTAAACCGCAGAA 58.345 40.909 0.00 0.00 0.00 3.02
100 101 3.057104 TCTCGATGAAGTTAAACCGCAGA 60.057 43.478 0.00 0.00 0.00 4.26
101 102 3.250744 TCTCGATGAAGTTAAACCGCAG 58.749 45.455 0.00 0.00 0.00 5.18
102 103 3.306917 TCTCGATGAAGTTAAACCGCA 57.693 42.857 0.00 0.00 0.00 5.69
103 104 4.859629 ATTCTCGATGAAGTTAAACCGC 57.140 40.909 0.00 0.00 38.18 5.68
104 105 6.418226 CCTCTATTCTCGATGAAGTTAAACCG 59.582 42.308 0.00 0.00 38.18 4.44
115 116 5.806502 GCTGATGATTCCTCTATTCTCGATG 59.193 44.000 0.00 0.00 0.00 3.84
116 117 5.105392 GGCTGATGATTCCTCTATTCTCGAT 60.105 44.000 0.00 0.00 0.00 3.59
122 123 3.979347 AGGTGGCTGATGATTCCTCTATT 59.021 43.478 0.00 0.00 0.00 1.73
124 125 2.702478 CAGGTGGCTGATGATTCCTCTA 59.298 50.000 0.00 0.00 0.00 2.43
132 133 0.178995 TTGTTGCAGGTGGCTGATGA 60.179 50.000 0.00 0.00 45.15 2.92
143 144 0.606401 AGGACGGTCCATTGTTGCAG 60.606 55.000 27.87 0.00 39.61 4.41
153 154 4.329545 TTGCAGGCAGGACGGTCC 62.330 66.667 19.61 19.61 36.58 4.46
156 157 3.357079 GTGTTGCAGGCAGGACGG 61.357 66.667 0.00 0.00 0.00 4.79
170 171 4.251268 GGTTCTCTAATTAAGGCGTGTGT 58.749 43.478 0.00 0.00 0.00 3.72
174 175 3.773119 TGAGGGTTCTCTAATTAAGGCGT 59.227 43.478 0.00 0.00 40.58 5.68
191 198 1.002888 CCCAGATCAATCCGATGAGGG 59.997 57.143 0.00 0.00 41.52 4.30
201 208 0.481567 CTCCATGCCCCCAGATCAAT 59.518 55.000 0.00 0.00 0.00 2.57
209 216 2.351924 TTATTCGCCTCCATGCCCCC 62.352 60.000 0.00 0.00 0.00 5.40
210 217 0.467290 TTTATTCGCCTCCATGCCCC 60.467 55.000 0.00 0.00 0.00 5.80
213 224 1.002033 CAGCTTTATTCGCCTCCATGC 60.002 52.381 0.00 0.00 0.00 4.06
231 242 1.065926 TGTGGGAACTGCTGCTATCAG 60.066 52.381 0.00 0.00 43.16 2.90
235 246 1.003355 GCTGTGGGAACTGCTGCTA 60.003 57.895 0.00 0.00 0.00 3.49
237 248 3.368571 GGCTGTGGGAACTGCTGC 61.369 66.667 7.51 0.00 35.36 5.25
241 252 2.086869 CATACTTGGCTGTGGGAACTG 58.913 52.381 0.00 0.00 0.00 3.16
311 322 8.305046 AGACATAGCTCTGTAAGAAGAGAAAT 57.695 34.615 4.51 0.00 46.34 2.17
317 328 7.319646 AGTTGAAGACATAGCTCTGTAAGAAG 58.680 38.462 4.51 0.00 46.34 2.85
323 334 5.674052 ATGAGTTGAAGACATAGCTCTGT 57.326 39.130 4.12 4.12 0.00 3.41
324 335 5.982516 GGTATGAGTTGAAGACATAGCTCTG 59.017 44.000 0.00 0.00 39.95 3.35
325 336 5.896678 AGGTATGAGTTGAAGACATAGCTCT 59.103 40.000 13.53 0.00 45.67 4.09
326 337 6.155475 AGGTATGAGTTGAAGACATAGCTC 57.845 41.667 13.53 0.00 45.67 4.09
328 339 6.265649 TCCTAGGTATGAGTTGAAGACATAGC 59.734 42.308 9.08 0.00 41.93 2.97
329 340 7.504238 ACTCCTAGGTATGAGTTGAAGACATAG 59.496 40.741 9.08 0.00 38.67 2.23
330 341 7.355101 ACTCCTAGGTATGAGTTGAAGACATA 58.645 38.462 9.08 0.00 38.67 2.29
331 342 6.198639 ACTCCTAGGTATGAGTTGAAGACAT 58.801 40.000 9.08 0.00 38.67 3.06
334 345 9.521841 CATATACTCCTAGGTATGAGTTGAAGA 57.478 37.037 9.08 0.00 41.80 2.87
335 346 8.247562 GCATATACTCCTAGGTATGAGTTGAAG 58.752 40.741 17.28 3.83 41.80 3.02
336 347 7.950684 AGCATATACTCCTAGGTATGAGTTGAA 59.049 37.037 17.28 0.00 41.80 2.69
338 349 7.710676 AGCATATACTCCTAGGTATGAGTTG 57.289 40.000 17.28 7.43 41.80 3.16
347 1694 7.666388 ACAAGTACACTAGCATATACTCCTAGG 59.334 40.741 0.82 0.82 34.32 3.02
388 1736 7.989416 AAAAATCTTTGTCCGTCCTTATACA 57.011 32.000 0.00 0.00 0.00 2.29
389 1737 9.159364 ACTAAAAATCTTTGTCCGTCCTTATAC 57.841 33.333 0.00 0.00 0.00 1.47
390 1738 9.729281 AACTAAAAATCTTTGTCCGTCCTTATA 57.271 29.630 0.00 0.00 0.00 0.98
392 1740 8.347035 CAAACTAAAAATCTTTGTCCGTCCTTA 58.653 33.333 0.00 0.00 0.00 2.69
394 1742 6.320418 ACAAACTAAAAATCTTTGTCCGTCCT 59.680 34.615 0.00 0.00 33.78 3.85
402 1755 7.170320 AGAGCATGCACAAACTAAAAATCTTTG 59.830 33.333 21.98 0.00 0.00 2.77
403 1756 7.212274 AGAGCATGCACAAACTAAAAATCTTT 58.788 30.769 21.98 0.00 0.00 2.52
430 1783 2.421424 GCTTTTCTCATCGTGCTGGATT 59.579 45.455 0.00 0.00 0.00 3.01
469 1822 6.037062 TCGTACCATGTTGCTAGATTGATTTG 59.963 38.462 0.00 0.00 0.00 2.32
490 1843 6.741992 ATTGAGCTCAAAATCATGTTCGTA 57.258 33.333 31.55 5.30 39.55 3.43
528 1883 5.405571 GTCGAGGACATGCATTTATATTCGT 59.594 40.000 0.00 0.00 32.09 3.85
530 1885 5.633601 TCGTCGAGGACATGCATTTATATTC 59.366 40.000 3.17 0.00 32.09 1.75
540 1895 1.078759 CAGGTTCGTCGAGGACATGC 61.079 60.000 7.43 0.00 32.09 4.06
549 1904 2.355363 TGCCGTTCAGGTTCGTCG 60.355 61.111 0.00 0.00 43.70 5.12
552 1907 2.604174 GGTGTGCCGTTCAGGTTCG 61.604 63.158 0.00 0.00 43.70 3.95
553 1908 1.507141 CTGGTGTGCCGTTCAGGTTC 61.507 60.000 0.00 0.00 43.70 3.62
566 1921 3.181329 TGGTATCTGGTCAATCTGGTGT 58.819 45.455 0.00 0.00 0.00 4.16
568 1923 5.455326 GCTATTGGTATCTGGTCAATCTGGT 60.455 44.000 0.00 0.00 33.72 4.00
575 1930 3.068165 CACTCGCTATTGGTATCTGGTCA 59.932 47.826 0.00 0.00 0.00 4.02
576 1931 3.068307 ACACTCGCTATTGGTATCTGGTC 59.932 47.826 0.00 0.00 0.00 4.02
577 1932 3.031736 ACACTCGCTATTGGTATCTGGT 58.968 45.455 0.00 0.00 0.00 4.00
580 1935 2.695666 AGCACACTCGCTATTGGTATCT 59.304 45.455 0.00 0.00 41.55 1.98
583 1938 2.579207 GAGCACACTCGCTATTGGTA 57.421 50.000 0.00 0.00 44.01 3.25
621 1976 3.189287 GTGTAAACTGTTGGATGAGGCTG 59.811 47.826 0.00 0.00 0.00 4.85
622 1977 3.181445 TGTGTAAACTGTTGGATGAGGCT 60.181 43.478 0.00 0.00 0.00 4.58
625 1983 8.820933 CATATAGTGTGTAAACTGTTGGATGAG 58.179 37.037 0.00 0.00 0.00 2.90
644 2002 8.654997 AGATACAAGAACAATGCTCCATATAGT 58.345 33.333 0.00 0.00 0.00 2.12
648 2006 9.679661 TTTTAGATACAAGAACAATGCTCCATA 57.320 29.630 0.00 0.00 0.00 2.74
664 2075 8.184848 CACTCTCGATCTCTTGTTTTAGATACA 58.815 37.037 0.00 0.00 32.60 2.29
707 2118 4.023291 TCCCAAGCAGAAAAACTCTTGTT 58.977 39.130 0.00 0.00 38.16 2.83
708 2119 3.631250 TCCCAAGCAGAAAAACTCTTGT 58.369 40.909 0.00 0.00 34.80 3.16
709 2120 4.861102 ATCCCAAGCAGAAAAACTCTTG 57.139 40.909 0.00 0.00 35.55 3.02
710 2121 6.376581 CAGATATCCCAAGCAGAAAAACTCTT 59.623 38.462 0.00 0.00 29.07 2.85
711 2122 5.884792 CAGATATCCCAAGCAGAAAAACTCT 59.115 40.000 0.00 0.00 33.23 3.24
712 2123 5.882557 TCAGATATCCCAAGCAGAAAAACTC 59.117 40.000 0.00 0.00 0.00 3.01
713 2124 5.819991 TCAGATATCCCAAGCAGAAAAACT 58.180 37.500 0.00 0.00 0.00 2.66
714 2125 6.515272 TTCAGATATCCCAAGCAGAAAAAC 57.485 37.500 0.00 0.00 0.00 2.43
728 2139 7.806960 GCTGCCAAATAACTGAATTCAGATATC 59.193 37.037 36.15 22.26 46.59 1.63
806 2223 1.687494 CGCGCTTAGCCTGTCTTCAC 61.687 60.000 5.56 0.00 44.76 3.18
819 2236 3.909258 ATCGTCGGTCAACGCGCTT 62.909 57.895 5.73 0.00 42.31 4.68
823 2240 0.233848 AAAACATCGTCGGTCAACGC 59.766 50.000 0.00 0.00 42.31 4.84
848 2265 5.220989 CGTGTATCGACTCTTCCCAAGATAA 60.221 44.000 0.00 0.00 42.86 1.75
877 2294 2.546494 GCGCACTTGTCCTTGCAGT 61.546 57.895 0.30 0.00 38.76 4.40
967 2384 1.633945 GATAGGTTTCAGGTGTGGGGT 59.366 52.381 0.00 0.00 0.00 4.95
1021 2438 0.741221 CTCCTGGTGGCTTTCGCTAC 60.741 60.000 0.00 0.00 45.79 3.58
1058 2476 6.760770 CAGACTTGAGATGGTAAATTCTCTCC 59.239 42.308 0.00 0.00 39.30 3.71
1188 2606 5.970023 GCATTCCAAAGAATCTTTCTCATCG 59.030 40.000 5.09 0.00 40.89 3.84
1409 2838 6.889177 TGGTGCATCAATCTTAAAAGGATACA 59.111 34.615 0.00 0.00 41.41 2.29
1478 2907 1.239347 GCAGACCACCTCAAGTTTCC 58.761 55.000 0.00 0.00 0.00 3.13
1556 5046 2.171870 AGAGACGGGACAAAACCAAAGA 59.828 45.455 0.00 0.00 0.00 2.52
1602 5092 1.207329 AGTTCCTCATAACACCCTCGC 59.793 52.381 0.00 0.00 0.00 5.03
1655 5148 5.854010 ATCCAACGTGAGAGTATGTATGT 57.146 39.130 0.00 0.00 0.00 2.29
1721 5216 9.439500 ACTAACAAATGCAAGCAAAAATATGAT 57.561 25.926 0.00 0.00 0.00 2.45
1906 5456 0.104671 TGTTGAAAGCTGGGCAAAGC 59.895 50.000 3.39 3.39 43.88 3.51
2040 5599 6.560711 ACCGAAGAAATGCAACATAATTACC 58.439 36.000 0.00 0.00 0.00 2.85
2061 5620 7.985752 ACTAAGACCTCTAAATTTGGATAACCG 59.014 37.037 4.56 0.00 39.42 4.44
2094 5653 9.738832 GTGTTAAACAACTTCCAGCTAAATTTA 57.261 29.630 0.00 0.00 0.00 1.40
2201 5772 5.575606 CGGTGTTGTTCTGTCGTCTATAATT 59.424 40.000 0.00 0.00 0.00 1.40
2224 5795 2.353208 CCACTGAGGAGTCCTTCTTTCG 60.353 54.545 14.41 0.35 41.22 3.46
2248 5819 2.983907 TGGTGTCGTTAAAGTCCACA 57.016 45.000 12.77 0.00 0.00 4.17
2267 5841 8.641498 TCTAGCTCTTTCAAAATCCAATTCTT 57.359 30.769 0.00 0.00 0.00 2.52
2389 5963 8.531146 TGAGTAGAACATAAGTCACATTCATCA 58.469 33.333 0.00 0.00 0.00 3.07
2392 5966 7.765819 CCATGAGTAGAACATAAGTCACATTCA 59.234 37.037 0.00 0.00 0.00 2.57
2408 5982 0.250234 GGCAGTGCACCATGAGTAGA 59.750 55.000 18.61 0.00 0.00 2.59
2411 5985 0.607489 GAAGGCAGTGCACCATGAGT 60.607 55.000 18.61 0.00 0.00 3.41
2482 6056 0.953471 TTTGGGGCGAGAATGTGTCG 60.953 55.000 0.00 0.00 40.50 4.35
2484 6058 2.026262 ACTATTTGGGGCGAGAATGTGT 60.026 45.455 0.00 0.00 0.00 3.72
2487 6061 4.718940 AAAACTATTTGGGGCGAGAATG 57.281 40.909 0.00 0.00 0.00 2.67
2544 6142 3.069158 CCCTCATCCATCTTGGCAAATTC 59.931 47.826 0.00 0.00 37.47 2.17
2578 6176 9.425248 AAATATGCCATCTCTAATTTTTCCTGA 57.575 29.630 0.00 0.00 0.00 3.86
2584 6182 7.588512 GCGAGAAATATGCCATCTCTAATTTT 58.411 34.615 0.00 0.00 37.93 1.82
2585 6183 7.138692 GCGAGAAATATGCCATCTCTAATTT 57.861 36.000 0.00 0.00 37.93 1.82
2586 6184 6.734104 GCGAGAAATATGCCATCTCTAATT 57.266 37.500 0.00 0.00 37.93 1.40
2597 6195 4.558538 ACATTTGAGGCGAGAAATATGC 57.441 40.909 0.00 0.00 0.00 3.14
2598 6196 7.816945 AAAAACATTTGAGGCGAGAAATATG 57.183 32.000 0.00 0.00 0.00 1.78
2619 6217 7.548780 GCCTTGCTACAATTTATCCATCAAAAA 59.451 33.333 0.00 0.00 0.00 1.94
2639 6237 3.477899 GGCGAGAAATATATGCCTTGC 57.522 47.619 14.20 14.20 42.44 4.01
2644 6242 6.246420 ACATTTGAGGCGAGAAATATATGC 57.754 37.500 0.00 0.00 0.00 3.14
2668 6266 7.548780 GCCTTGCTACAATTTATCCATCAAAAA 59.451 33.333 0.00 0.00 0.00 1.94
2669 6267 7.041107 GCCTTGCTACAATTTATCCATCAAAA 58.959 34.615 0.00 0.00 0.00 2.44
2670 6268 6.154192 TGCCTTGCTACAATTTATCCATCAAA 59.846 34.615 0.00 0.00 0.00 2.69
2671 6269 5.655974 TGCCTTGCTACAATTTATCCATCAA 59.344 36.000 0.00 0.00 0.00 2.57
2672 6270 5.199723 TGCCTTGCTACAATTTATCCATCA 58.800 37.500 0.00 0.00 0.00 3.07
2673 6271 5.772825 TGCCTTGCTACAATTTATCCATC 57.227 39.130 0.00 0.00 0.00 3.51
2674 6272 9.705103 ATATATGCCTTGCTACAATTTATCCAT 57.295 29.630 0.00 0.00 0.00 3.41
2675 6273 9.177608 GATATATGCCTTGCTACAATTTATCCA 57.822 33.333 0.00 0.00 0.00 3.41
2676 6274 9.401058 AGATATATGCCTTGCTACAATTTATCC 57.599 33.333 0.00 0.00 0.00 2.59
2678 6276 9.964354 TGAGATATATGCCTTGCTACAATTTAT 57.036 29.630 0.00 0.00 0.00 1.40
2679 6277 9.964354 ATGAGATATATGCCTTGCTACAATTTA 57.036 29.630 0.00 0.00 0.00 1.40
2680 6278 8.737175 CATGAGATATATGCCTTGCTACAATTT 58.263 33.333 0.00 0.00 0.00 1.82
2681 6279 7.148120 GCATGAGATATATGCCTTGCTACAATT 60.148 37.037 0.00 0.00 43.88 2.32
2682 6280 6.318144 GCATGAGATATATGCCTTGCTACAAT 59.682 38.462 0.00 0.00 43.88 2.71
2683 6281 5.645067 GCATGAGATATATGCCTTGCTACAA 59.355 40.000 0.00 0.00 43.88 2.41
2684 6282 5.181009 GCATGAGATATATGCCTTGCTACA 58.819 41.667 0.00 0.00 43.88 2.74
2685 6283 5.731599 GCATGAGATATATGCCTTGCTAC 57.268 43.478 0.00 0.00 43.88 3.58
2698 6296 8.720562 CGTATCAACATTATTTGGCATGAGATA 58.279 33.333 0.00 0.00 0.00 1.98
2699 6297 7.229306 ACGTATCAACATTATTTGGCATGAGAT 59.771 33.333 0.00 0.00 0.00 2.75
2700 6298 6.542005 ACGTATCAACATTATTTGGCATGAGA 59.458 34.615 0.00 0.00 0.00 3.27
2713 6311 6.534475 TCCTACACCTTACGTATCAACATT 57.466 37.500 0.00 0.00 0.00 2.71
2766 6364 4.222886 CAATTGCGACGTCCAAAACATAA 58.777 39.130 18.93 2.05 0.00 1.90
2784 6382 8.742777 TCAGCACAAGAAATCTTATTAGCAATT 58.257 29.630 0.00 0.00 34.28 2.32
2804 6402 8.454106 ACTAAACTTTGTGATCATATTCAGCAC 58.546 33.333 0.00 0.00 0.00 4.40
2827 6426 2.866156 GCGCAATACAGATGCAAGACTA 59.134 45.455 0.30 0.00 44.01 2.59
2835 6434 4.541085 TCTTGATTGCGCAATACAGATG 57.459 40.909 33.98 22.37 0.00 2.90
2838 6437 7.919313 ATATTTTCTTGATTGCGCAATACAG 57.081 32.000 33.98 28.85 0.00 2.74
2842 6441 8.700722 TTTGTATATTTTCTTGATTGCGCAAT 57.299 26.923 34.41 34.41 0.00 3.56
2863 6462 9.912634 CCTATATTTCACAGTGAACAAATTTGT 57.087 29.630 18.13 18.13 44.72 2.83
2922 6524 2.167281 GTCATCCTGAAGAGTGCTAGCA 59.833 50.000 14.93 14.93 0.00 3.49
2923 6525 2.430332 AGTCATCCTGAAGAGTGCTAGC 59.570 50.000 8.10 8.10 0.00 3.42
2935 6537 7.824289 TGGATTTAGAGTTTTGTAGTCATCCTG 59.176 37.037 0.00 0.00 31.83 3.86
2936 6538 7.918076 TGGATTTAGAGTTTTGTAGTCATCCT 58.082 34.615 0.00 0.00 31.83 3.24
2937 6539 7.201652 GCTGGATTTAGAGTTTTGTAGTCATCC 60.202 40.741 0.00 0.00 31.47 3.51
2938 6540 7.550906 AGCTGGATTTAGAGTTTTGTAGTCATC 59.449 37.037 0.00 0.00 0.00 2.92
2939 6541 7.335422 CAGCTGGATTTAGAGTTTTGTAGTCAT 59.665 37.037 5.57 0.00 0.00 3.06
2940 6542 6.650807 CAGCTGGATTTAGAGTTTTGTAGTCA 59.349 38.462 5.57 0.00 0.00 3.41
2941 6543 6.874134 TCAGCTGGATTTAGAGTTTTGTAGTC 59.126 38.462 15.13 0.00 0.00 2.59
2942 6544 6.769512 TCAGCTGGATTTAGAGTTTTGTAGT 58.230 36.000 15.13 0.00 0.00 2.73
2943 6545 7.672983 TTCAGCTGGATTTAGAGTTTTGTAG 57.327 36.000 15.13 0.00 0.00 2.74
2944 6546 7.308589 GCTTTCAGCTGGATTTAGAGTTTTGTA 60.309 37.037 15.13 0.00 38.45 2.41
2945 6547 6.515696 GCTTTCAGCTGGATTTAGAGTTTTGT 60.516 38.462 15.13 0.00 38.45 2.83
2946 6548 5.860716 GCTTTCAGCTGGATTTAGAGTTTTG 59.139 40.000 15.13 0.00 38.45 2.44
2947 6549 5.047731 GGCTTTCAGCTGGATTTAGAGTTTT 60.048 40.000 15.13 0.00 41.99 2.43
2948 6550 4.460731 GGCTTTCAGCTGGATTTAGAGTTT 59.539 41.667 15.13 0.00 41.99 2.66
2949 6551 4.013050 GGCTTTCAGCTGGATTTAGAGTT 58.987 43.478 15.13 0.00 41.99 3.01
2950 6552 3.265479 AGGCTTTCAGCTGGATTTAGAGT 59.735 43.478 15.13 0.00 41.99 3.24
2951 6553 3.883669 AGGCTTTCAGCTGGATTTAGAG 58.116 45.455 15.13 0.00 41.99 2.43
2952 6554 4.716784 TCTAGGCTTTCAGCTGGATTTAGA 59.283 41.667 15.13 10.86 41.99 2.10
2953 6555 5.028549 TCTAGGCTTTCAGCTGGATTTAG 57.971 43.478 15.13 0.05 41.99 1.85
2954 6556 5.186198 GTTCTAGGCTTTCAGCTGGATTTA 58.814 41.667 15.13 0.00 41.99 1.40
2955 6557 4.013050 GTTCTAGGCTTTCAGCTGGATTT 58.987 43.478 15.13 0.00 41.99 2.17
2956 6558 3.009473 TGTTCTAGGCTTTCAGCTGGATT 59.991 43.478 15.13 0.00 41.99 3.01
2957 6559 2.573462 TGTTCTAGGCTTTCAGCTGGAT 59.427 45.455 15.13 0.00 41.99 3.41
2958 6560 1.977854 TGTTCTAGGCTTTCAGCTGGA 59.022 47.619 15.13 0.46 41.99 3.86
2959 6561 2.479566 TGTTCTAGGCTTTCAGCTGG 57.520 50.000 15.13 0.00 41.99 4.85
2960 6562 2.606725 CGATGTTCTAGGCTTTCAGCTG 59.393 50.000 7.63 7.63 41.99 4.24
2961 6563 2.234908 ACGATGTTCTAGGCTTTCAGCT 59.765 45.455 0.00 0.00 41.99 4.24
2962 6564 2.622436 ACGATGTTCTAGGCTTTCAGC 58.378 47.619 0.00 0.00 41.46 4.26
2963 6565 5.613358 AAAACGATGTTCTAGGCTTTCAG 57.387 39.130 0.00 0.00 0.00 3.02
2964 6566 7.499321 TTTAAAACGATGTTCTAGGCTTTCA 57.501 32.000 0.00 0.00 0.00 2.69
2965 6567 8.074370 AGTTTTAAAACGATGTTCTAGGCTTTC 58.926 33.333 22.04 0.00 43.51 2.62
2966 6568 7.937649 AGTTTTAAAACGATGTTCTAGGCTTT 58.062 30.769 22.04 0.00 43.51 3.51
2967 6569 7.506328 AGTTTTAAAACGATGTTCTAGGCTT 57.494 32.000 22.04 0.51 43.51 4.35
2968 6570 7.506328 AAGTTTTAAAACGATGTTCTAGGCT 57.494 32.000 22.04 0.00 43.51 4.58
2969 6571 7.114388 CCAAAGTTTTAAAACGATGTTCTAGGC 59.886 37.037 22.04 0.00 43.51 3.93
2970 6572 7.593644 CCCAAAGTTTTAAAACGATGTTCTAGG 59.406 37.037 22.04 16.23 43.51 3.02
2971 6573 7.593644 CCCCAAAGTTTTAAAACGATGTTCTAG 59.406 37.037 22.04 12.53 43.51 2.43
2972 6574 7.427214 CCCCAAAGTTTTAAAACGATGTTCTA 58.573 34.615 22.04 0.00 43.51 2.10
2973 6575 6.277605 CCCCAAAGTTTTAAAACGATGTTCT 58.722 36.000 22.04 3.57 43.51 3.01
2974 6576 5.464057 CCCCCAAAGTTTTAAAACGATGTTC 59.536 40.000 22.04 0.51 43.51 3.18
2975 6577 5.361427 CCCCCAAAGTTTTAAAACGATGTT 58.639 37.500 22.04 13.52 43.51 2.71
2976 6578 4.951254 CCCCCAAAGTTTTAAAACGATGT 58.049 39.130 22.04 8.99 43.51 3.06
2995 6597 1.571955 ATTGTGATGGCTTTTCCCCC 58.428 50.000 0.00 0.00 0.00 5.40
2996 6598 2.833943 AGAATTGTGATGGCTTTTCCCC 59.166 45.455 0.00 0.00 0.00 4.81
2997 6599 4.248058 CAAGAATTGTGATGGCTTTTCCC 58.752 43.478 0.00 0.00 42.34 3.97
3078 6875 3.452264 AGTGTGATGGCAAGATAGCAGTA 59.548 43.478 0.00 0.00 35.83 2.74
3082 6879 2.805099 GCTAGTGTGATGGCAAGATAGC 59.195 50.000 0.00 0.00 0.00 2.97
3084 6881 3.706086 TCTGCTAGTGTGATGGCAAGATA 59.294 43.478 0.00 0.00 36.14 1.98
3086 6883 1.901833 TCTGCTAGTGTGATGGCAAGA 59.098 47.619 0.00 0.00 36.14 3.02
3088 6885 2.857186 TTCTGCTAGTGTGATGGCAA 57.143 45.000 0.00 0.00 36.14 4.52
3123 6920 1.072331 ACAATGTCTCCCGTCTTGCTT 59.928 47.619 0.00 0.00 0.00 3.91
3125 6922 0.798776 CACAATGTCTCCCGTCTTGC 59.201 55.000 0.00 0.00 0.00 4.01
3151 6948 9.936759 TCTGTTTGTTCAATTTTTCCTTTAGTT 57.063 25.926 0.00 0.00 0.00 2.24
3221 7018 5.177326 AGATCTTGTTGATGAGAAGAGCAC 58.823 41.667 0.00 0.00 44.08 4.40
3256 7054 5.698089 CCATGACTTGCTCGTTATGATGTAT 59.302 40.000 10.67 0.00 34.01 2.29
3262 7060 2.282555 CGACCATGACTTGCTCGTTATG 59.717 50.000 0.00 4.50 30.42 1.90
3278 7076 8.304596 GTCATTTCTATAGATGTTATCCGACCA 58.695 37.037 2.58 0.00 0.00 4.02
3279 7077 8.524487 AGTCATTTCTATAGATGTTATCCGACC 58.476 37.037 2.58 0.00 0.00 4.79
3353 7155 8.997323 TGAAACAAACTTGAATTGTCAAATGTT 58.003 25.926 0.00 8.16 43.18 2.71
3364 7166 4.432712 GTGTGGCTGAAACAAACTTGAAT 58.567 39.130 0.00 0.00 0.00 2.57
3375 7177 2.664851 CGCTCGGTGTGGCTGAAA 60.665 61.111 0.00 0.00 31.00 2.69
3387 7189 2.016704 CCGTAATGCTAGGCGCTCG 61.017 63.158 7.64 0.00 40.11 5.03
3411 7213 0.174845 CAATCTGTTGCCATGCCTGG 59.825 55.000 3.22 3.22 46.17 4.45
3424 7226 1.822613 ATGCAGGGCGCTCAATCTG 60.823 57.895 11.40 10.15 43.06 2.90
3456 7258 4.974645 ACCTAGGTCATGTTCTTTGTCA 57.025 40.909 9.21 0.00 0.00 3.58
3508 7311 3.418684 AGTAACCAAAATCAGCTCCGT 57.581 42.857 0.00 0.00 0.00 4.69
3510 7313 5.453567 AACAAGTAACCAAAATCAGCTCC 57.546 39.130 0.00 0.00 0.00 4.70
3515 7318 7.899648 TTTCCCTAACAAGTAACCAAAATCA 57.100 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.