Multiple sequence alignment - TraesCS4A01G347900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G347900 chr4A 100.000 3467 0 0 1 3467 625541286 625544752 0.000000e+00 6403.0
1 TraesCS4A01G347900 chr4A 81.001 1479 231 26 950 2403 624452691 624451238 0.000000e+00 1129.0
2 TraesCS4A01G347900 chr4A 80.069 1445 211 45 998 2403 616840675 616839269 0.000000e+00 1002.0
3 TraesCS4A01G347900 chr4A 80.547 1316 177 42 1003 2261 616238390 616237097 0.000000e+00 939.0
4 TraesCS4A01G347900 chr4A 77.115 520 99 17 1009 1515 616903262 616902750 2.040000e-72 283.0
5 TraesCS4A01G347900 chr4A 85.560 277 28 5 2934 3207 616235604 616235337 2.630000e-71 279.0
6 TraesCS4A01G347900 chr4A 87.500 192 18 4 2749 2936 616789807 616789618 2.100000e-52 217.0
7 TraesCS4A01G347900 chr4A 86.500 200 18 5 3024 3220 616838484 616838291 9.750000e-51 211.0
8 TraesCS4A01G347900 chr4A 81.091 275 32 9 2670 2936 616236184 616235922 5.870000e-48 202.0
9 TraesCS4A01G347900 chr4A 86.364 110 13 1 3265 3372 616788825 616788716 6.080000e-23 119.0
10 TraesCS4A01G347900 chr4A 84.545 110 15 1 3265 3372 616235190 616235081 1.320000e-19 108.0
11 TraesCS4A01G347900 chr4A 94.444 36 1 1 3231 3265 616838262 616838227 2.000000e-03 54.7
12 TraesCS4A01G347900 chr5B 92.825 2425 122 21 319 2717 685257893 685255495 0.000000e+00 3467.0
13 TraesCS4A01G347900 chr5B 82.745 1501 208 30 937 2403 703529290 703530773 0.000000e+00 1290.0
14 TraesCS4A01G347900 chr5B 82.400 1500 211 31 937 2403 699415035 699416514 0.000000e+00 1258.0
15 TraesCS4A01G347900 chr5B 80.314 1402 240 22 976 2359 703634086 703635469 0.000000e+00 1027.0
16 TraesCS4A01G347900 chr5B 96.089 537 19 1 2933 3467 685254825 685254289 0.000000e+00 874.0
17 TraesCS4A01G347900 chr5B 92.869 603 34 2 1021 1615 685543835 685544436 0.000000e+00 867.0
18 TraesCS4A01G347900 chr5B 95.288 382 15 1 1161 1539 685259981 685259600 1.380000e-168 603.0
19 TraesCS4A01G347900 chr5B 97.231 325 9 0 2612 2936 685255494 685255170 5.060000e-153 551.0
20 TraesCS4A01G347900 chr5B 83.774 567 64 11 261 806 685532976 685533535 2.390000e-141 512.0
21 TraesCS4A01G347900 chr5B 73.937 1481 278 70 967 2399 703488436 703489856 6.680000e-137 497.0
22 TraesCS4A01G347900 chr5B 86.031 451 37 13 720 1165 685290165 685289736 8.770000e-126 460.0
23 TraesCS4A01G347900 chr5B 91.589 321 21 4 923 1241 685532663 685532979 4.110000e-119 438.0
24 TraesCS4A01G347900 chr5B 76.550 516 103 13 1003 1506 703329976 703330485 2.050000e-67 267.0
25 TraesCS4A01G347900 chr5B 82.500 320 35 8 227 525 685290527 685290208 9.540000e-66 261.0
26 TraesCS4A01G347900 chr5B 84.477 277 30 6 2934 3207 699275778 699276044 9.540000e-66 261.0
27 TraesCS4A01G347900 chr5B 82.724 301 34 9 2980 3269 677748933 677748640 5.740000e-63 252.0
28 TraesCS4A01G347900 chr5B 86.700 203 19 4 584 785 685290208 685290013 5.830000e-53 219.0
29 TraesCS4A01G347900 chr5B 81.752 274 39 7 2669 2934 699438848 699439118 5.830000e-53 219.0
30 TraesCS4A01G347900 chr5B 81.720 279 29 11 2667 2936 699275196 699275461 2.710000e-51 213.0
31 TraesCS4A01G347900 chr5B 79.661 236 42 4 2679 2908 703525486 703525721 7.700000e-37 165.0
32 TraesCS4A01G347900 chr5B 79.263 217 35 8 2980 3191 699421523 699421734 3.610000e-30 143.0
33 TraesCS4A01G347900 chr5B 92.157 51 4 0 2669 2719 703643002 703643052 4.800000e-09 73.1
34 TraesCS4A01G347900 chr5B 100.000 28 0 0 3238 3265 699417407 699417434 6.000000e-03 52.8
35 TraesCS4A01G347900 chr5D 96.461 1441 35 8 910 2345 543465732 543464303 0.000000e+00 2364.0
36 TraesCS4A01G347900 chr5D 81.467 1500 229 26 937 2403 551119780 551121263 0.000000e+00 1184.0
37 TraesCS4A01G347900 chr5D 98.686 609 7 1 2328 2936 543464289 543463682 0.000000e+00 1079.0
38 TraesCS4A01G347900 chr5D 97.015 536 13 3 2934 3467 543463335 543462801 0.000000e+00 898.0
39 TraesCS4A01G347900 chr5D 86.131 274 18 6 50 306 543491252 543490982 9.480000e-71 278.0
40 TraesCS4A01G347900 chr5D 83.849 291 31 9 2936 3221 552048888 552048609 2.650000e-66 263.0
41 TraesCS4A01G347900 chr5D 75.962 520 107 15 1005 1512 551051743 551052256 5.740000e-63 252.0
42 TraesCS4A01G347900 chr5D 82.847 274 36 6 2669 2933 552345426 552345155 5.780000e-58 235.0
43 TraesCS4A01G347900 chr5D 83.682 239 26 7 2981 3211 537218559 537218792 2.710000e-51 213.0
44 TraesCS4A01G347900 chr5D 81.455 275 31 9 2670 2936 552049470 552049208 1.260000e-49 207.0
45 TraesCS4A01G347900 chr5D 81.624 234 37 4 2679 2907 551115985 551116217 4.570000e-44 189.0
46 TraesCS4A01G347900 chr5D 83.636 110 16 1 3265 3372 552048480 552048371 6.120000e-18 102.0
47 TraesCS4A01G347900 chr2D 77.554 695 102 36 50 716 154611530 154612198 1.520000e-98 370.0
48 TraesCS4A01G347900 chr2A 77.586 696 99 38 50 716 146347379 146346712 5.470000e-98 368.0
49 TraesCS4A01G347900 chr6D 79.242 501 80 16 227 716 428483022 428482535 9.280000e-86 327.0
50 TraesCS4A01G347900 chr1A 79.739 459 67 22 210 656 57133170 57133614 3.360000e-80 309.0
51 TraesCS4A01G347900 chr1A 85.632 174 22 3 62 233 57132987 57133159 2.750000e-41 180.0
52 TraesCS4A01G347900 chr3B 78.185 518 79 15 226 716 207129556 207129046 2.020000e-77 300.0
53 TraesCS4A01G347900 chr7D 78.384 495 70 24 227 709 104899490 104899959 1.570000e-73 287.0
54 TraesCS4A01G347900 chr7D 87.135 171 16 4 59 227 104899115 104899281 4.570000e-44 189.0
55 TraesCS4A01G347900 chr1B 81.383 188 27 6 50 233 309385990 309386173 2.790000e-31 147.0
56 TraesCS4A01G347900 chr4D 85.714 126 14 4 210 333 70364680 70364557 2.810000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G347900 chr4A 625541286 625544752 3466 False 6403.000000 6403 100.000000 1 3467 1 chr4A.!!$F1 3466
1 TraesCS4A01G347900 chr4A 624451238 624452691 1453 True 1129.000000 1129 81.001000 950 2403 1 chr4A.!!$R2 1453
2 TraesCS4A01G347900 chr4A 616838227 616840675 2448 True 422.566667 1002 87.004333 998 3265 3 chr4A.!!$R5 2267
3 TraesCS4A01G347900 chr4A 616235081 616238390 3309 True 382.000000 939 82.935750 1003 3372 4 chr4A.!!$R3 2369
4 TraesCS4A01G347900 chr4A 616902750 616903262 512 True 283.000000 283 77.115000 1009 1515 1 chr4A.!!$R1 506
5 TraesCS4A01G347900 chr5B 685254289 685259981 5692 True 1373.750000 3467 95.358250 319 3467 4 chr5B.!!$R2 3148
6 TraesCS4A01G347900 chr5B 703634086 703635469 1383 False 1027.000000 1027 80.314000 976 2359 1 chr5B.!!$F6 1383
7 TraesCS4A01G347900 chr5B 685543835 685544436 601 False 867.000000 867 92.869000 1021 1615 1 chr5B.!!$F1 594
8 TraesCS4A01G347900 chr5B 703525486 703530773 5287 False 727.500000 1290 81.203000 937 2908 2 chr5B.!!$F11 1971
9 TraesCS4A01G347900 chr5B 699415035 699417434 2399 False 655.400000 1258 91.200000 937 3265 2 chr5B.!!$F10 2328
10 TraesCS4A01G347900 chr5B 703488436 703489856 1420 False 497.000000 497 73.937000 967 2399 1 chr5B.!!$F5 1432
11 TraesCS4A01G347900 chr5B 685532663 685533535 872 False 475.000000 512 87.681500 261 1241 2 chr5B.!!$F8 980
12 TraesCS4A01G347900 chr5B 685289736 685290527 791 True 313.333333 460 85.077000 227 1165 3 chr5B.!!$R3 938
13 TraesCS4A01G347900 chr5B 703329976 703330485 509 False 267.000000 267 76.550000 1003 1506 1 chr5B.!!$F4 503
14 TraesCS4A01G347900 chr5B 699275196 699276044 848 False 237.000000 261 83.098500 2667 3207 2 chr5B.!!$F9 540
15 TraesCS4A01G347900 chr5D 543462801 543465732 2931 True 1447.000000 2364 97.387333 910 3467 3 chr5D.!!$R3 2557
16 TraesCS4A01G347900 chr5D 551115985 551121263 5278 False 686.500000 1184 81.545500 937 2907 2 chr5D.!!$F3 1970
17 TraesCS4A01G347900 chr5D 551051743 551052256 513 False 252.000000 252 75.962000 1005 1512 1 chr5D.!!$F2 507
18 TraesCS4A01G347900 chr2D 154611530 154612198 668 False 370.000000 370 77.554000 50 716 1 chr2D.!!$F1 666
19 TraesCS4A01G347900 chr2A 146346712 146347379 667 True 368.000000 368 77.586000 50 716 1 chr2A.!!$R1 666
20 TraesCS4A01G347900 chr1A 57132987 57133614 627 False 244.500000 309 82.685500 62 656 2 chr1A.!!$F1 594
21 TraesCS4A01G347900 chr3B 207129046 207129556 510 True 300.000000 300 78.185000 226 716 1 chr3B.!!$R1 490
22 TraesCS4A01G347900 chr7D 104899115 104899959 844 False 238.000000 287 82.759500 59 709 2 chr7D.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 2590 0.040058 AAGGTGATGGATGCCTGCAA 59.960 50.0 0.0 0.0 32.16 4.08 F
802 2603 0.171903 CCTGCAAAAAGATCGGCTGG 59.828 55.0 0.0 0.0 38.67 4.85 F
981 3916 0.323999 TCGATCCCCTCTCGAAACCA 60.324 55.0 0.0 0.0 41.79 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 5250 0.034059 AGCTCCGTGGACACAAAGAG 59.966 55.000 3.12 6.53 33.38 2.85 R
2038 5259 2.871795 TAGATGCCCAGCTCCGTGGA 62.872 60.000 0.00 0.00 40.44 4.02 R
2940 7652 3.646162 ACATGATATCTTACCGAAGCCCA 59.354 43.478 0.00 0.00 32.21 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.992180 AAAGTACAAGCACTGAAGAAAATTG 57.008 32.000 0.00 0.00 0.00 2.32
51 52 6.942532 AGTACAAGCACTGAAGAAAATTGA 57.057 33.333 0.00 0.00 0.00 2.57
52 53 7.333528 AGTACAAGCACTGAAGAAAATTGAA 57.666 32.000 0.00 0.00 0.00 2.69
54 55 5.594926 ACAAGCACTGAAGAAAATTGAAGG 58.405 37.500 0.00 0.00 0.00 3.46
55 56 4.248691 AGCACTGAAGAAAATTGAAGGC 57.751 40.909 0.00 0.00 0.00 4.35
56 57 2.982470 GCACTGAAGAAAATTGAAGGCG 59.018 45.455 0.00 0.00 0.00 5.52
60 61 2.288152 TGAAGAAAATTGAAGGCGTGCC 60.288 45.455 1.67 1.67 0.00 5.01
285 498 2.356313 CGTCCAGCAGCAACGTCT 60.356 61.111 0.00 0.00 0.00 4.18
331 2102 0.613012 GGAATGAAGGCTGCCAAGGT 60.613 55.000 22.65 2.35 0.00 3.50
339 2110 2.046285 GCTGCCAAGGTAATGCGGT 61.046 57.895 0.00 0.00 33.88 5.68
389 2160 2.879233 AAGAGGCGGCTTGGACGAA 61.879 57.895 14.76 0.00 35.20 3.85
409 2180 4.812476 CATCGAGCGGCCGTGGAA 62.812 66.667 28.70 11.05 0.00 3.53
504 2296 1.436326 AGGAGAGCATGCTCATCCAT 58.564 50.000 38.76 29.26 44.99 3.41
551 2343 0.692476 CATGTCTGGAGGTTGTGGGA 59.308 55.000 0.00 0.00 0.00 4.37
623 2419 2.288213 GGTCCAGTTTGCAAAGCTAACC 60.288 50.000 13.26 16.97 43.11 2.85
626 2422 2.384382 CAGTTTGCAAAGCTAACCGTG 58.616 47.619 13.26 2.93 43.11 4.94
709 2509 4.581648 GCGCGCAGAAAGATCGGC 62.582 66.667 29.10 0.00 42.49 5.54
774 2575 4.706842 AATATCCGACAGCCATAAAGGT 57.293 40.909 0.00 0.00 40.61 3.50
789 2590 0.040058 AAGGTGATGGATGCCTGCAA 59.960 50.000 0.00 0.00 32.16 4.08
798 2599 1.202336 GGATGCCTGCAAAAAGATCGG 60.202 52.381 0.00 0.00 0.00 4.18
799 2600 0.174162 ATGCCTGCAAAAAGATCGGC 59.826 50.000 2.55 2.55 38.01 5.54
802 2603 0.171903 CCTGCAAAAAGATCGGCTGG 59.828 55.000 0.00 0.00 38.67 4.85
808 2609 0.609131 AAAAGATCGGCTGGGTGGTG 60.609 55.000 0.00 0.00 0.00 4.17
839 2640 6.769822 AGATACTTCCAAGCCATGTGATTAAG 59.230 38.462 0.00 0.00 0.00 1.85
844 2645 6.855763 TCCAAGCCATGTGATTAAGAAAAT 57.144 33.333 0.00 0.00 0.00 1.82
906 2711 5.324832 TGGGATGAAAAGAAGAGTTTCCT 57.675 39.130 0.00 0.00 34.67 3.36
981 3916 0.323999 TCGATCCCCTCTCGAAACCA 60.324 55.000 0.00 0.00 41.79 3.67
1042 3986 2.418777 CATCGCTGCCGGATGAGA 59.581 61.111 5.05 4.02 34.56 3.27
1545 4743 3.626977 CTCGAAAGGAGATGACGATGAG 58.373 50.000 0.00 0.00 46.23 2.90
1866 5081 2.028925 GGCAGTTTGGGGTTTGCG 59.971 61.111 0.00 0.00 37.43 4.85
1966 5181 7.703058 ACAATTATCAATCTCGGAAACCTTT 57.297 32.000 0.00 0.00 0.00 3.11
1967 5182 8.122472 ACAATTATCAATCTCGGAAACCTTTT 57.878 30.769 0.00 0.00 0.00 2.27
1988 5206 0.468029 CCCATCCAAAATCCCGAGGG 60.468 60.000 0.65 0.65 0.00 4.30
2029 5250 3.399181 TGGAGGGCCGTGATGTCC 61.399 66.667 0.65 0.00 36.79 4.02
2038 5259 1.878102 GCCGTGATGTCCTCTTTGTGT 60.878 52.381 0.00 0.00 0.00 3.72
2242 5589 5.046950 AGGTTAGTGGAGCAAACAAAACAAA 60.047 36.000 0.00 0.00 0.00 2.83
2501 6236 6.842676 AGGATAATCTTGTAATGAACCTCCC 58.157 40.000 0.00 0.00 0.00 4.30
2629 6499 5.938125 TGCTCTCCCAACACTCTAAATTTAC 59.062 40.000 0.00 0.00 0.00 2.01
2978 7690 8.500238 AGATATCATGTCCATTATGGCATACAT 58.500 33.333 16.54 13.53 43.68 2.29
3128 7856 6.560003 AATGAACCACTCATGTACATAGGA 57.440 37.500 8.32 1.75 44.43 2.94
3425 8251 1.207811 GTGAAAGGGGGCATCAATTGG 59.792 52.381 5.42 0.00 0.00 3.16
3452 8278 9.807649 AAATGCATCAATTTAGTCTTACCATTC 57.192 29.630 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.872845 CAATTTTCTTCAGTGCTTGTACTTTTT 58.127 29.630 0.00 0.00 0.00 1.94
25 26 8.250332 TCAATTTTCTTCAGTGCTTGTACTTTT 58.750 29.630 0.00 0.00 0.00 2.27
28 29 6.942532 TCAATTTTCTTCAGTGCTTGTACT 57.057 33.333 0.00 0.00 0.00 2.73
29 30 6.638468 CCTTCAATTTTCTTCAGTGCTTGTAC 59.362 38.462 0.00 0.00 0.00 2.90
32 33 4.446719 GCCTTCAATTTTCTTCAGTGCTTG 59.553 41.667 0.00 0.00 0.00 4.01
33 34 4.625028 GCCTTCAATTTTCTTCAGTGCTT 58.375 39.130 0.00 0.00 0.00 3.91
34 35 3.304928 CGCCTTCAATTTTCTTCAGTGCT 60.305 43.478 0.00 0.00 0.00 4.40
35 36 2.982470 CGCCTTCAATTTTCTTCAGTGC 59.018 45.455 0.00 0.00 0.00 4.40
36 37 3.976942 CACGCCTTCAATTTTCTTCAGTG 59.023 43.478 0.00 0.00 0.00 3.66
37 38 3.550842 GCACGCCTTCAATTTTCTTCAGT 60.551 43.478 0.00 0.00 0.00 3.41
40 41 2.328473 GGCACGCCTTCAATTTTCTTC 58.672 47.619 0.00 0.00 0.00 2.87
41 42 2.438868 GGCACGCCTTCAATTTTCTT 57.561 45.000 0.00 0.00 0.00 2.52
60 61 0.597637 GGTAGATCACACGGCCATCG 60.598 60.000 2.24 0.00 45.88 3.84
147 149 4.636249 TGGCCTTTGTTGCGAATAATTTT 58.364 34.783 3.32 0.00 0.00 1.82
186 188 8.306313 ACAGGTTAAGAGGAAAAGACAATTTT 57.694 30.769 0.00 0.00 0.00 1.82
190 192 5.067283 GCAACAGGTTAAGAGGAAAAGACAA 59.933 40.000 0.00 0.00 0.00 3.18
305 519 0.539051 CAGCCTTCATTCCTCGGTCT 59.461 55.000 0.00 0.00 0.00 3.85
331 2102 2.257974 GCGAGATCGATACCGCATTA 57.742 50.000 27.98 0.00 46.04 1.90
339 2110 3.264947 GCTCCGGCGAGATCGATA 58.735 61.111 9.30 0.00 43.02 2.92
372 2143 3.302347 CTTCGTCCAAGCCGCCTCT 62.302 63.158 0.00 0.00 0.00 3.69
389 2160 4.498520 CACGGCCGCTCGATGACT 62.499 66.667 28.58 0.00 0.00 3.41
409 2180 3.569049 CTCGGTCGTTGGTCGCCTT 62.569 63.158 0.00 0.00 39.67 4.35
517 2309 1.884464 CATGCGCGCCACTAGACAT 60.884 57.895 30.77 9.84 0.00 3.06
551 2343 3.428532 AGCTTGTTGCAAGATCTGGATT 58.571 40.909 12.45 0.00 45.94 3.01
636 2435 4.955811 AATCACATGGCTCGGAAGTATA 57.044 40.909 0.00 0.00 0.00 1.47
668 2468 4.900684 TCCATTGTCTTTATGGTTGTCGA 58.099 39.130 0.00 0.00 42.58 4.20
683 2483 1.585267 TTTCTGCGCGCATCCATTGT 61.585 50.000 36.48 0.00 0.00 2.71
685 2485 1.026182 TCTTTCTGCGCGCATCCATT 61.026 50.000 36.48 0.00 0.00 3.16
774 2575 2.527497 TCTTTTTGCAGGCATCCATCA 58.473 42.857 0.00 0.00 0.00 3.07
789 2590 0.609131 CACCACCCAGCCGATCTTTT 60.609 55.000 0.00 0.00 0.00 2.27
867 2668 1.215655 CCATCGATCTTTCGGCGTCC 61.216 60.000 6.85 0.00 45.53 4.79
870 2671 0.319900 ATCCCATCGATCTTTCGGCG 60.320 55.000 0.00 0.00 45.53 6.46
873 2674 4.811024 TCTTTTCATCCCATCGATCTTTCG 59.189 41.667 0.00 0.00 46.87 3.46
883 2688 5.896963 AGGAAACTCTTCTTTTCATCCCAT 58.103 37.500 0.00 0.00 32.90 4.00
885 2690 6.656632 AAAGGAAACTCTTCTTTTCATCCC 57.343 37.500 0.00 0.00 42.68 3.85
931 2736 1.134521 GGTCTGTGCGATGGGTCATTA 60.135 52.381 0.00 0.00 0.00 1.90
1101 4053 2.359230 AGCTTGCTTGCGAGGGAC 60.359 61.111 11.36 0.00 38.13 4.46
1676 4885 4.227134 CGATGAGGACAGGGGGCG 62.227 72.222 0.00 0.00 0.00 6.13
1816 5031 1.347050 CATGAGGATAGAGGCAGTGGG 59.653 57.143 0.00 0.00 0.00 4.61
1866 5081 2.417933 GAGTGTTGATCCACTGACATGC 59.582 50.000 9.08 0.00 45.46 4.06
1966 5181 1.003646 TCGGGATTTTGGATGGGGAA 58.996 50.000 0.00 0.00 0.00 3.97
1967 5182 0.550914 CTCGGGATTTTGGATGGGGA 59.449 55.000 0.00 0.00 0.00 4.81
1988 5206 3.536570 GATCCAACCAGTCTAAGGCTTC 58.463 50.000 1.30 0.00 0.00 3.86
2029 5250 0.034059 AGCTCCGTGGACACAAAGAG 59.966 55.000 3.12 6.53 33.38 2.85
2038 5259 2.871795 TAGATGCCCAGCTCCGTGGA 62.872 60.000 0.00 0.00 40.44 4.02
2629 6499 9.971922 AAAGTTCAAACATATCTCTTTGAAAGG 57.028 29.630 4.94 0.00 44.16 3.11
2644 6515 5.007034 TCTCAACTCACCAAAGTTCAAACA 58.993 37.500 0.00 0.00 37.38 2.83
2729 6769 4.376413 CGTCAGTAACACTGCTTTGCTAAG 60.376 45.833 3.31 3.31 45.54 2.18
2940 7652 3.646162 ACATGATATCTTACCGAAGCCCA 59.354 43.478 0.00 0.00 32.21 5.36
3236 7986 5.399991 ACATATAGGATCACCCTTACGGAA 58.600 41.667 0.00 0.00 44.85 4.30
3425 8251 9.807649 AATGGTAAGACTAAATTGATGCATTTC 57.192 29.630 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.