AutoCloner

Multiple sequence alignment - TraesCS4A01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G346800	chr4A	100.000	3287	0	0	1	3287	625261397	625264683	0.000000e+00	6071
1	TraesCS4A01G346800	chr4A	83.568	639	95	6	2653	3287	625366948	625367580	1.020000e-164	590
2	TraesCS4A01G346800	chr4A	83.420	193	27	3	2698	2890	625281071	625281258	1.210000e-39	174
3	TraesCS4A01G346800	chr4A	74.603	252	55	4	3039	3287	624991732	624991977	5.800000e-18	102
4	TraesCS4A01G346800	chr5D	96.657	2513	81	3	94	2604	243095964	243093453	0.000000e+00	4172
5	TraesCS4A01G346800	chr5D	83.480	2494	391	14	125	2604	298986775	298989261	0.000000e+00	2303
6	TraesCS4A01G346800	chr5D	90.526	1636	136	3	122	1755	399933812	399932194	0.000000e+00	2145
7	TraesCS4A01G346800	chr5D	93.027	674	39	5	2616	3287	543831802	543831135	0.000000e+00	977
8	TraesCS4A01G346800	chr5D	84.627	683	91	8	2609	3287	543777807	543777135	0.000000e+00	667
9	TraesCS4A01G346800	chr5D	79.630	324	58	6	2968	3287	544150245	544149926	3.300000e-55	226
10	TraesCS4A01G346800	chr5D	82.775	209	29	5	2698	2906	543818246	543818045	2.610000e-41	180
11	TraesCS4A01G346800	chr5D	82.564	195	29	3	2698	2892	543778189	543778000	2.030000e-37	167
12	TraesCS4A01G346800	chr1A	91.403	2466	196	6	141	2604	365499954	365502405	0.000000e+00	3365
13	TraesCS4A01G346800	chr3B	92.454	1895	136	6	721	2609	380512236	380510343	0.000000e+00	2700
14	TraesCS4A01G346800	chr6B	89.749	2029	196	8	147	2174	632989948	632987931	0.000000e+00	2584
15	TraesCS4A01G346800	chr6A	93.002	1772	117	6	838	2603	3380455	3382225	0.000000e+00	2579
16	TraesCS4A01G346800	chr4B	90.630	1857	173	1	192	2047	657547809	657549665	0.000000e+00	2464
17	TraesCS4A01G346800	chr7A	84.179	2503	350	26	122	2611	537670697	537668228	0.000000e+00	2386
18	TraesCS4A01G346800	chr7D	82.906	2498	399	17	125	2608	37009159	37006676	0.000000e+00	2222
19	TraesCS4A01G346800	chr7D	81.975	405	63	8	123	519	271758687	271759089	5.260000e-88	335
20	TraesCS4A01G346800	chr2B	88.722	1729	176	10	121	1838	728178657	728176937	0.000000e+00	2095
21	TraesCS4A01G346800	chr5B	92.453	689	44	5	2598	3284	685656560	685657242	0.000000e+00	977
22	TraesCS4A01G346800	chr5B	83.333	192	27	3	2698	2889	685690734	685690920	4.360000e-39	172

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G346800	chr4A	625261397	625264683	3286	False	6071	6071	100.0000	1	3287	1	chr4A.!!$F2	3286
1	TraesCS4A01G346800	chr4A	625366948	625367580	632	False	590	590	83.5680	2653	3287	1	chr4A.!!$F4	634
2	TraesCS4A01G346800	chr5D	243093453	243095964	2511	True	4172	4172	96.6570	94	2604	1	chr5D.!!$R1	2510
3	TraesCS4A01G346800	chr5D	298986775	298989261	2486	False	2303	2303	83.4800	125	2604	1	chr5D.!!$F1	2479
4	TraesCS4A01G346800	chr5D	399932194	399933812	1618	True	2145	2145	90.5260	122	1755	1	chr5D.!!$R2	1633
5	TraesCS4A01G346800	chr5D	543831135	543831802	667	True	977	977	93.0270	2616	3287	1	chr5D.!!$R4	671
6	TraesCS4A01G346800	chr5D	543777135	543778189	1054	True	417	667	83.5955	2609	3287	2	chr5D.!!$R6	678
7	TraesCS4A01G346800	chr1A	365499954	365502405	2451	False	3365	3365	91.4030	141	2604	1	chr1A.!!$F1	2463
8	TraesCS4A01G346800	chr3B	380510343	380512236	1893	True	2700	2700	92.4540	721	2609	1	chr3B.!!$R1	1888
9	TraesCS4A01G346800	chr6B	632987931	632989948	2017	True	2584	2584	89.7490	147	2174	1	chr6B.!!$R1	2027
10	TraesCS4A01G346800	chr6A	3380455	3382225	1770	False	2579	2579	93.0020	838	2603	1	chr6A.!!$F1	1765
11	TraesCS4A01G346800	chr4B	657547809	657549665	1856	False	2464	2464	90.6300	192	2047	1	chr4B.!!$F1	1855
12	TraesCS4A01G346800	chr7A	537668228	537670697	2469	True	2386	2386	84.1790	122	2611	1	chr7A.!!$R1	2489
13	TraesCS4A01G346800	chr7D	37006676	37009159	2483	True	2222	2222	82.9060	125	2608	1	chr7D.!!$R1	2483
14	TraesCS4A01G346800	chr2B	728176937	728178657	1720	True	2095	2095	88.7220	121	1838	1	chr2B.!!$R1	1717
15	TraesCS4A01G346800	chr5B	685656560	685657242	682	False	977	977	92.4530	2598	3284	1	chr5B.!!$F1	686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
399	400	0.251209	ACAGCTGGAGGTCGTCTGTA	60.251	55.0	19.93	0.0	36.37	2.74	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2364	2426	0.108615	CCCGACAAGAACAGCTCGAT	60.109	55.0	0.0	0.0	0.0	3.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.621992	TCTCCTTCGAGACTTGCACT	58.378	50.000	0.00	0.00	40.34	4.40
20	21	2.791655	TCTCCTTCGAGACTTGCACTA	58.208	47.619	0.00	0.00	40.34	2.74
21	22	2.750166	TCTCCTTCGAGACTTGCACTAG	59.250	50.000	0.00	0.00	40.34	2.57
22	23	2.750166	CTCCTTCGAGACTTGCACTAGA	59.250	50.000	0.00	0.00	38.52	2.43
23	24	2.750166	TCCTTCGAGACTTGCACTAGAG	59.250	50.000	0.00	0.00	0.00	2.43
24	25	2.750166	CCTTCGAGACTTGCACTAGAGA	59.250	50.000	0.00	0.00	0.00	3.10
25	26	3.380004	CCTTCGAGACTTGCACTAGAGAT	59.620	47.826	0.00	0.00	0.00	2.75
27	28	5.240623	CCTTCGAGACTTGCACTAGAGATAT	59.759	44.000	0.00	0.00	0.00	1.63
28	29	6.238897	CCTTCGAGACTTGCACTAGAGATATT	60.239	42.308	0.00	0.00	0.00	1.28
29	30	6.701145	TCGAGACTTGCACTAGAGATATTT	57.299	37.500	0.00	0.00	0.00	1.40
30	31	7.101652	TCGAGACTTGCACTAGAGATATTTT	57.898	36.000	0.00	0.00	0.00	1.82
31	32	7.548097	TCGAGACTTGCACTAGAGATATTTTT	58.452	34.615	0.00	0.00	0.00	1.94
55	56	3.983666	CGAGAAGCACGAGAGAATTTTG	58.016	45.455	0.00	0.00	0.00	2.44
56	57	3.430218	CGAGAAGCACGAGAGAATTTTGT	59.570	43.478	0.00	0.00	0.00	2.83
58	59	5.220117	CGAGAAGCACGAGAGAATTTTGTAG	60.220	44.000	0.00	0.00	0.00	2.74
60	61	3.931578	AGCACGAGAGAATTTTGTAGCT	58.068	40.909	0.00	0.00	0.00	3.32
61	62	5.073311	AGCACGAGAGAATTTTGTAGCTA	57.927	39.130	0.00	0.00	0.00	3.32
62	63	5.105752	AGCACGAGAGAATTTTGTAGCTAG	58.894	41.667	0.00	0.00	0.00	3.42
63	64	4.260011	GCACGAGAGAATTTTGTAGCTAGC	60.260	45.833	6.62	6.62	0.00	3.42
65	66	5.005203	CACGAGAGAATTTTGTAGCTAGCTG	59.995	44.000	27.68	7.42	0.00	4.24
66	67	5.105716	ACGAGAGAATTTTGTAGCTAGCTGA	60.106	40.000	27.68	10.85	0.00	4.26
69	70	7.010923	CGAGAGAATTTTGTAGCTAGCTGAATT	59.989	37.037	27.68	23.13	0.00	2.17
71	72	9.672673	AGAGAATTTTGTAGCTAGCTGAATTTA	57.327	29.630	27.68	2.54	0.00	1.40
77	78	7.979444	TTGTAGCTAGCTGAATTTAAACACT	57.021	32.000	27.68	0.00	0.00	3.55
78	79	7.979444	TGTAGCTAGCTGAATTTAAACACTT	57.021	32.000	27.68	0.00	0.00	3.16
82	83	7.940850	AGCTAGCTGAATTTAAACACTTCAAA	58.059	30.769	18.57	0.00	0.00	2.69
84	85	9.196552	GCTAGCTGAATTTAAACACTTCAAATT	57.803	29.630	7.70	0.00	35.22	1.82
335	336	2.282745	AAGCCTCAACTGCTGCCC	60.283	61.111	0.00	0.00	39.48	5.36
336	337	2.761304	GAAGCCTCAACTGCTGCCCT	62.761	60.000	0.00	0.00	39.48	5.19
399	400	0.251209	ACAGCTGGAGGTCGTCTGTA	60.251	55.000	19.93	0.00	36.37	2.74
428	429	2.366301	TCCCGCCAAGGCCAGATA	60.366	61.111	5.01	0.00	39.21	1.98
554	555	2.040939	CTCCAGATCATGCTCCTGTCT	58.959	52.381	0.00	0.00	0.00	3.41
585	613	2.685999	GCTTGGATCCCCTGCCTT	59.314	61.111	9.90	0.00	0.00	4.35
700	728	2.121963	ACTCCTGTGGAAGCCCCA	60.122	61.111	0.00	0.00	44.25	4.96
965	1002	3.596214	GCTACCAAATCCTCAGTTTCGA	58.404	45.455	0.00	0.00	0.00	3.71
1107	1146	1.336125	GCTTGGCTTCATGGTAGATGC	59.664	52.381	0.00	0.00	37.80	3.91
1392	1437	1.305633	TGCTAGCTCTGTGGCCTCT	60.306	57.895	17.23	0.00	0.00	3.69
1394	1439	1.326213	GCTAGCTCTGTGGCCTCTGA	61.326	60.000	7.70	13.02	0.00	3.27
1405	1450	0.980423	GGCCTCTGAGGATATCCCAC	59.020	60.000	27.53	13.09	37.67	4.61
1410	1455	1.043816	CTGAGGATATCCCACTGCGT	58.956	55.000	18.56	0.00	37.41	5.24
1680	1730	1.522580	GGGAGACGAGCTTCATGGC	60.523	63.158	0.00	0.00	0.00	4.40
1759	1809	0.756294	TGATGTGGTTGTGACTCCGT	59.244	50.000	0.00	0.00	0.00	4.69
1984	2038	1.204941	GTCAGGCGTCAACCAGTCTAT	59.795	52.381	0.00	0.00	0.00	1.98
2039	2093	1.202758	TGCTGATGTTCCCTCGTTTGT	60.203	47.619	0.00	0.00	0.00	2.83
2265	2319	3.210012	AAAGAGTGGCGCCATGGGT	62.210	57.895	35.23	17.99	0.00	4.51
2278	2336	0.824109	CATGGGTAAGGCGTCTCTCA	59.176	55.000	0.00	0.00	0.00	3.27
2315	2377	0.394488	TTCGATCTCTCGGCCTGTCT	60.394	55.000	0.00	0.00	45.10	3.41
2339	2401	2.631160	TGATTGGGTTGTCGTTGAGT	57.369	45.000	0.00	0.00	0.00	3.41
2364	2426	1.555075	GGAGGTGCCTGATGTCTTGTA	59.445	52.381	0.00	0.00	0.00	2.41
2542	2606	5.048573	GCCCGGTTTTCTGTAAATTAACTGA	60.049	40.000	0.00	0.00	0.00	3.41
2765	2831	3.257933	CTGCAAGCCTCCGTTGAC	58.742	61.111	0.00	0.00	0.00	3.18
2772	2838	0.687354	AGCCTCCGTTGACATTCAGT	59.313	50.000	0.00	0.00	0.00	3.41
2776	2842	3.338249	CCTCCGTTGACATTCAGTTCAT	58.662	45.455	0.00	0.00	0.00	2.57
2890	2959	5.859782	CACCAAGTGATTGTGAGCTACACC	61.860	50.000	11.99	0.98	41.17	4.16
2908	2977	1.340211	ACCGAACTTGGACAACCACAA	60.340	47.619	0.00	0.00	46.80	3.33
2914	2983	2.301346	CTTGGACAACCACAAGAGCTT	58.699	47.619	0.00	0.00	46.80	3.74
2920	2989	1.528586	CAACCACAAGAGCTTCGTCAG	59.471	52.381	0.00	0.00	0.00	3.51
2935	3004	1.210478	CGTCAGGGAAGATGGAACCAT	59.790	52.381	6.00	6.00	39.69	3.55
2946	3015	6.208599	GGAAGATGGAACCATTTCACTTACAA	59.791	38.462	19.54	0.00	36.70	2.41
2954	3023	8.711457	GGAACCATTTCACTTACAAAATCATTG	58.289	33.333	0.00	0.00	32.80	2.82
3000	3072	1.593006	GATACGACATGGTTGCTTCCG	59.407	52.381	0.00	0.00	0.00	4.30
3063	3135	1.968493	GATACGGTATGGAAGCTCCCA	59.032	52.381	5.18	0.00	41.05	4.37
3078	3150	5.894298	AGCTCCCAGATACATTATTGTCA	57.106	39.130	0.00	0.00	37.28	3.58
3134	3206	5.997746	CGATATGTTTGTCCCCAGATACAAT	59.002	40.000	0.00	0.00	35.64	2.71
3161	3233	4.540359	TGCTACCAGTTACGGTATTGTT	57.460	40.909	6.57	0.00	40.74	2.83
3189	3261	3.125316	GGTTACGACAGTGTTGTTGCTA	58.875	45.455	21.15	0.42	41.62	3.49

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.621992	AGTGCAAGTCTCGAAGGAGA	58.378	50.000	0.00	0.00	46.90	3.71
2	3	2.750166	CTCTAGTGCAAGTCTCGAAGGA	59.250	50.000	0.00	0.00	0.00	3.36
3	4	2.750166	TCTCTAGTGCAAGTCTCGAAGG	59.250	50.000	0.00	0.00	0.00	3.46
5	6	6.701145	AATATCTCTAGTGCAAGTCTCGAA	57.299	37.500	0.00	0.00	0.00	3.71
6	7	6.701145	AAATATCTCTAGTGCAAGTCTCGA	57.299	37.500	0.00	0.00	0.00	4.04
33	34	1.634702	AATTCTCTCGTGCTTCTCGC	58.365	50.000	0.00	0.00	39.77	5.03
36	37	4.390297	GCTACAAAATTCTCTCGTGCTTCT	59.610	41.667	0.00	0.00	0.00	2.85
37	38	4.390297	AGCTACAAAATTCTCTCGTGCTTC	59.610	41.667	0.00	0.00	0.00	3.86
38	39	4.319177	AGCTACAAAATTCTCTCGTGCTT	58.681	39.130	0.00	0.00	0.00	3.91
39	40	3.931578	AGCTACAAAATTCTCTCGTGCT	58.068	40.909	0.00	0.00	0.00	4.40
41	42	5.005203	CAGCTAGCTACAAAATTCTCTCGTG	59.995	44.000	18.86	0.00	0.00	4.35
42	43	5.105716	TCAGCTAGCTACAAAATTCTCTCGT	60.106	40.000	18.86	0.00	0.00	4.18
43	44	5.344066	TCAGCTAGCTACAAAATTCTCTCG	58.656	41.667	18.86	0.00	0.00	4.04
44	45	7.784633	ATTCAGCTAGCTACAAAATTCTCTC	57.215	36.000	18.86	0.00	0.00	3.20
45	46	8.572855	AAATTCAGCTAGCTACAAAATTCTCT	57.427	30.769	18.86	4.38	0.00	3.10
50	51	9.626045	GTGTTTAAATTCAGCTAGCTACAAAAT	57.374	29.630	18.86	11.80	0.00	1.82
51	52	8.846211	AGTGTTTAAATTCAGCTAGCTACAAAA	58.154	29.630	18.86	9.97	0.00	2.44
53	54	7.979444	AGTGTTTAAATTCAGCTAGCTACAA	57.021	32.000	18.86	13.65	0.00	2.41
54	55	7.659799	TGAAGTGTTTAAATTCAGCTAGCTACA	59.340	33.333	18.86	12.70	0.00	2.74
55	56	8.029642	TGAAGTGTTTAAATTCAGCTAGCTAC	57.970	34.615	18.86	9.99	0.00	3.58
56	57	8.615878	TTGAAGTGTTTAAATTCAGCTAGCTA	57.384	30.769	18.86	2.62	34.64	3.32
58	59	8.748380	ATTTGAAGTGTTTAAATTCAGCTAGC	57.252	30.769	6.62	6.62	34.64	3.42
69	70	9.681692	CTCACATGATGAATTTGAAGTGTTTAA	57.318	29.630	0.00	0.00	36.69	1.52
71	72	6.643770	GCTCACATGATGAATTTGAAGTGTTT	59.356	34.615	0.00	0.00	36.69	2.83
72	73	6.154445	GCTCACATGATGAATTTGAAGTGTT	58.846	36.000	0.00	0.00	36.69	3.32
73	74	5.618418	CGCTCACATGATGAATTTGAAGTGT	60.618	40.000	0.00	0.00	36.69	3.55
74	75	4.791676	CGCTCACATGATGAATTTGAAGTG	59.208	41.667	0.00	0.00	36.69	3.16
75	76	4.696877	TCGCTCACATGATGAATTTGAAGT	59.303	37.500	0.00	0.00	36.69	3.01
77	78	4.937015	TCTCGCTCACATGATGAATTTGAA	59.063	37.500	0.00	0.00	36.69	2.69
78	79	4.330894	GTCTCGCTCACATGATGAATTTGA	59.669	41.667	0.00	0.00	36.69	2.69
82	83	2.467838	CGTCTCGCTCACATGATGAAT	58.532	47.619	0.00	0.00	36.69	2.57
84	85	3.629858	CGTCTCGCTCACATGATGA	57.370	52.632	0.00	0.00	35.45	2.92
428	429	2.191375	CATCGGAGGTGCTGCCAT	59.809	61.111	0.00	0.00	40.61	4.40
554	555	1.152567	CAAGCCCTCCAACCACCAA	60.153	57.895	0.00	0.00	0.00	3.67
585	613	2.346541	CCAGGAGCAGAGTCAGCGA	61.347	63.158	1.44	0.00	37.01	4.93
716	744	0.806102	GACGGCGCTTCAGCAATAGA	60.806	55.000	6.90	0.00	42.21	1.98
800	828	1.811679	GCGCCACTTCTACAGGAGC	60.812	63.158	0.00	0.00	40.85	4.70
965	1002	4.790962	CATGCCCGGCTGAGCTGT	62.791	66.667	12.92	0.00	32.22	4.40
1080	1119	1.454479	ATGAAGCCAAGCGGGGATG	60.454	57.895	0.42	0.00	37.04	3.51
1107	1146	1.002201	CCAGGATAGAGGCATCTGCAG	59.998	57.143	11.96	7.63	44.36	4.41
1213	1254	3.901797	AAAAGCTGAGGGGACGCCG	62.902	63.158	2.39	0.00	0.00	6.46
1392	1437	3.223946	ACGCAGTGGGATATCCTCA	57.776	52.632	21.18	14.22	42.51	3.86
1405	1450	2.435586	CTCCAAGGCAGGACGCAG	60.436	66.667	0.00	0.00	45.17	5.18
1680	1730	0.895530	TAGCACGAGGGGAGAAACAG	59.104	55.000	0.00	0.00	0.00	3.16
1812	1866	2.019951	CGGTTGTTCGACGGACAGG	61.020	63.158	9.31	0.00	0.00	4.00
1873	1927	1.776662	CTAGAATCCAGGGGTGACGA	58.223	55.000	0.00	0.00	0.00	4.20
1984	2038	1.351076	TGCTCCATGACACCAAGAGA	58.649	50.000	0.00	0.00	31.86	3.10
2039	2093	0.253894	CATCACCTGCTCCATGGTCA	59.746	55.000	12.58	10.23	33.75	4.02
2265	2319	1.067565	CAAGCAGTGAGAGACGCCTTA	60.068	52.381	0.00	0.00	0.00	2.69
2278	2336	2.679059	CGAAGGTCATCCATCAAGCAGT	60.679	50.000	0.00	0.00	35.89	4.40
2315	2377	1.686355	ACGACAACCCAATCAAAGCA	58.314	45.000	0.00	0.00	0.00	3.91
2339	2401	1.379916	CATCAGGCACCTCCCAACA	59.620	57.895	0.00	0.00	34.51	3.33
2364	2426	0.108615	CCCGACAAGAACAGCTCGAT	60.109	55.000	0.00	0.00	0.00	3.59
2613	2677	0.033894	TGGGCTGTGCATCACATGAT	60.034	50.000	0.00	0.00	43.71	2.45
2614	2678	0.251253	TTGGGCTGTGCATCACATGA	60.251	50.000	0.00	0.00	43.71	3.07
2757	2823	4.001618	TGATGAACTGAATGTCAACGGA	57.998	40.909	0.00	0.00	0.00	4.69
2838	2904	6.458206	CCAATCGTGTTATGTAACTTCATGGG	60.458	42.308	4.71	0.00	37.12	4.00
2890	2959	2.285083	TCTTGTGGTTGTCCAAGTTCG	58.715	47.619	0.00	0.00	46.15	3.95
2908	2977	1.480137	CATCTTCCCTGACGAAGCTCT	59.520	52.381	0.00	0.00	39.33	4.09
2914	2983	0.902531	GGTTCCATCTTCCCTGACGA	59.097	55.000	0.00	0.00	0.00	4.20
2920	2989	3.701664	AGTGAAATGGTTCCATCTTCCC	58.298	45.455	4.72	3.83	32.28	3.97
2935	3004	9.300681	AGGAGATCAATGATTTTGTAAGTGAAA	57.699	29.630	0.00	0.00	0.00	2.69
2946	3015	7.106239	ACAAAGTCGTAGGAGATCAATGATTT	58.894	34.615	0.00	0.00	0.00	2.17
2954	3023	3.851098	AGCAACAAAGTCGTAGGAGATC	58.149	45.455	0.00	0.00	0.00	2.75
3000	3072	2.224670	TGGGACCAACAACACTGTATCC	60.225	50.000	0.00	0.00	33.45	2.59
3063	3135	6.433847	TCCGGGAATGACAATAATGTATCT	57.566	37.500	0.00	0.00	40.74	1.98
3161	3233	0.032403	CACTGTCGTAACCGGGAACA	59.968	55.000	6.32	1.26	33.95	3.18
3189	3261	3.258123	GGAATAACAACAATGTGGCTGGT	59.742	43.478	0.00	0.00	40.46	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.