Multiple sequence alignment - TraesCS4A01G346700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G346700 chr4A 100.000 4605 0 0 1 4605 625254299 625249695 0.000000e+00 8504
1 TraesCS4A01G346700 chr4A 78.628 1764 292 57 1352 3072 625394596 625396317 0.000000e+00 1090
2 TraesCS4A01G346700 chr4A 87.892 702 65 16 22 709 647335623 647336318 0.000000e+00 808
3 TraesCS4A01G346700 chr4A 87.007 685 67 18 43 712 693202435 693201758 0.000000e+00 752
4 TraesCS4A01G346700 chr4A 73.841 1273 286 36 1707 2969 624342929 624344164 3.250000e-126 462
5 TraesCS4A01G346700 chr4A 75.521 960 194 33 1692 2630 623337827 623338766 2.540000e-117 433
6 TraesCS4A01G346700 chr4A 100.000 109 0 0 1065 1173 600557020 600556912 7.810000e-48 202
7 TraesCS4A01G346700 chr4A 92.126 127 7 3 1067 1192 574539887 574540011 4.740000e-40 176
8 TraesCS4A01G346700 chr5B 94.399 2071 85 8 1601 3641 685653306 685651237 0.000000e+00 3153
9 TraesCS4A01G346700 chr5B 78.340 1602 289 43 1530 3100 685604921 685603347 0.000000e+00 983
10 TraesCS4A01G346700 chr5B 91.837 490 30 5 4125 4605 685650828 685650340 0.000000e+00 675
11 TraesCS4A01G346700 chr5B 83.452 562 36 21 4057 4605 685990771 685991288 1.940000e-128 470
12 TraesCS4A01G346700 chr5B 75.876 970 187 35 1692 2637 689210177 689209231 7.030000e-123 451
13 TraesCS4A01G346700 chr5B 94.937 237 12 0 3402 3638 685989965 685990201 5.630000e-99 372
14 TraesCS4A01G346700 chr5B 89.928 278 26 2 1207 1483 685653631 685653355 1.580000e-94 357
15 TraesCS4A01G346700 chr5B 85.512 283 22 11 788 1070 685653909 685653646 1.260000e-70 278
16 TraesCS4A01G346700 chr5B 95.161 124 6 0 3843 3966 685990412 685990535 3.630000e-46 196
17 TraesCS4A01G346700 chr5B 94.215 121 5 2 3637 3756 278886990 278886871 2.830000e-42 183
18 TraesCS4A01G346700 chr5B 83.333 162 27 0 2807 2968 685197821 685197660 2.870000e-32 150
19 TraesCS4A01G346700 chr5D 93.155 2133 116 18 1510 3641 543835564 543837667 0.000000e+00 3103
20 TraesCS4A01G346700 chr5D 76.634 2050 348 80 1442 3424 543707186 543705201 0.000000e+00 1011
21 TraesCS4A01G346700 chr5D 94.017 351 16 1 725 1070 543834925 543835275 1.130000e-145 527
22 TraesCS4A01G346700 chr5D 76.533 946 208 13 1682 2620 480031144 480032082 5.320000e-139 505
23 TraesCS4A01G346700 chr5D 84.942 518 33 19 3961 4471 543837921 543838400 2.490000e-132 483
24 TraesCS4A01G346700 chr5D 73.737 1306 289 36 1674 2970 544457539 544458799 3.250000e-126 462
25 TraesCS4A01G346700 chr5D 73.732 1321 279 50 1664 2969 243995449 243996716 5.430000e-124 455
26 TraesCS4A01G346700 chr5D 90.997 311 21 3 1174 1483 543835271 543835575 3.320000e-111 412
27 TraesCS4A01G346700 chr5D 94.064 219 13 0 3748 3966 543837669 543837887 2.660000e-87 333
28 TraesCS4A01G346700 chr1A 87.845 724 66 14 1 709 551741251 551740535 0.000000e+00 830
29 TraesCS4A01G346700 chr2B 88.143 700 66 14 22 709 735941385 735942079 0.000000e+00 817
30 TraesCS4A01G346700 chr2B 98.198 111 2 0 1063 1173 443378050 443378160 1.310000e-45 195
31 TraesCS4A01G346700 chr7B 88.143 700 64 16 22 709 558756938 558757630 0.000000e+00 815
32 TraesCS4A01G346700 chr7B 87.037 702 72 16 22 709 625159003 625159699 0.000000e+00 774
33 TraesCS4A01G346700 chr6B 87.732 701 66 18 22 709 45497236 45496543 0.000000e+00 800
34 TraesCS4A01G346700 chr3B 87.394 706 68 18 22 714 634150850 634151547 0.000000e+00 791
35 TraesCS4A01G346700 chr6A 85.062 723 88 17 1 710 310420823 310420108 0.000000e+00 719
36 TraesCS4A01G346700 chr6A 92.742 124 6 3 1058 1180 477910886 477910765 4.740000e-40 176
37 TraesCS4A01G346700 chr6A 91.406 128 7 3 1067 1191 475435162 475435036 6.130000e-39 172
38 TraesCS4A01G346700 chr1D 86.047 473 59 3 3173 3639 15061766 15061295 6.880000e-138 501
39 TraesCS4A01G346700 chr1D 91.753 291 23 1 2361 2650 15604973 15605263 2.000000e-108 403
40 TraesCS4A01G346700 chr1D 94.118 119 6 1 3638 3755 247520955 247521073 3.660000e-41 180
41 TraesCS4A01G346700 chr3A 100.000 110 0 0 1067 1176 688273718 688273609 2.170000e-48 204
42 TraesCS4A01G346700 chr3A 93.548 124 5 3 3623 3746 488771330 488771210 1.020000e-41 182
43 TraesCS4A01G346700 chr7A 96.491 114 3 1 3633 3746 133053222 133053334 2.190000e-43 187
44 TraesCS4A01G346700 chr7A 93.600 125 5 2 3641 3762 709291207 709291331 2.830000e-42 183
45 TraesCS4A01G346700 chr3D 95.690 116 5 0 3641 3756 572131109 572130994 2.190000e-43 187
46 TraesCS4A01G346700 chr3D 93.496 123 6 2 1054 1176 606889404 606889284 1.020000e-41 182
47 TraesCS4A01G346700 chr1B 95.726 117 3 2 3641 3756 651523591 651523706 2.190000e-43 187
48 TraesCS4A01G346700 chr2D 97.222 108 3 0 3640 3747 87035733 87035840 2.830000e-42 183
49 TraesCS4A01G346700 chr2A 94.828 116 6 0 1064 1179 209894275 209894160 1.020000e-41 182
50 TraesCS4A01G346700 chrUn 90.840 131 9 2 1066 1193 103936302 103936172 6.130000e-39 172
51 TraesCS4A01G346700 chr5A 88.489 139 15 1 3633 3771 135063705 135063568 2.850000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G346700 chr4A 625249695 625254299 4604 True 8504.00 8504 100.000000 1 4605 1 chr4A.!!$R2 4604
1 TraesCS4A01G346700 chr4A 625394596 625396317 1721 False 1090.00 1090 78.628000 1352 3072 1 chr4A.!!$F4 1720
2 TraesCS4A01G346700 chr4A 647335623 647336318 695 False 808.00 808 87.892000 22 709 1 chr4A.!!$F5 687
3 TraesCS4A01G346700 chr4A 693201758 693202435 677 True 752.00 752 87.007000 43 712 1 chr4A.!!$R3 669
4 TraesCS4A01G346700 chr4A 624342929 624344164 1235 False 462.00 462 73.841000 1707 2969 1 chr4A.!!$F3 1262
5 TraesCS4A01G346700 chr4A 623337827 623338766 939 False 433.00 433 75.521000 1692 2630 1 chr4A.!!$F2 938
6 TraesCS4A01G346700 chr5B 685650340 685653909 3569 True 1115.75 3153 90.419000 788 4605 4 chr5B.!!$R5 3817
7 TraesCS4A01G346700 chr5B 685603347 685604921 1574 True 983.00 983 78.340000 1530 3100 1 chr5B.!!$R3 1570
8 TraesCS4A01G346700 chr5B 689209231 689210177 946 True 451.00 451 75.876000 1692 2637 1 chr5B.!!$R4 945
9 TraesCS4A01G346700 chr5B 685989965 685991288 1323 False 346.00 470 91.183333 3402 4605 3 chr5B.!!$F1 1203
10 TraesCS4A01G346700 chr5D 543705201 543707186 1985 True 1011.00 1011 76.634000 1442 3424 1 chr5D.!!$R1 1982
11 TraesCS4A01G346700 chr5D 543834925 543838400 3475 False 971.60 3103 91.435000 725 4471 5 chr5D.!!$F4 3746
12 TraesCS4A01G346700 chr5D 480031144 480032082 938 False 505.00 505 76.533000 1682 2620 1 chr5D.!!$F2 938
13 TraesCS4A01G346700 chr5D 544457539 544458799 1260 False 462.00 462 73.737000 1674 2970 1 chr5D.!!$F3 1296
14 TraesCS4A01G346700 chr5D 243995449 243996716 1267 False 455.00 455 73.732000 1664 2969 1 chr5D.!!$F1 1305
15 TraesCS4A01G346700 chr1A 551740535 551741251 716 True 830.00 830 87.845000 1 709 1 chr1A.!!$R1 708
16 TraesCS4A01G346700 chr2B 735941385 735942079 694 False 817.00 817 88.143000 22 709 1 chr2B.!!$F2 687
17 TraesCS4A01G346700 chr7B 558756938 558757630 692 False 815.00 815 88.143000 22 709 1 chr7B.!!$F1 687
18 TraesCS4A01G346700 chr7B 625159003 625159699 696 False 774.00 774 87.037000 22 709 1 chr7B.!!$F2 687
19 TraesCS4A01G346700 chr6B 45496543 45497236 693 True 800.00 800 87.732000 22 709 1 chr6B.!!$R1 687
20 TraesCS4A01G346700 chr3B 634150850 634151547 697 False 791.00 791 87.394000 22 714 1 chr3B.!!$F1 692
21 TraesCS4A01G346700 chr6A 310420108 310420823 715 True 719.00 719 85.062000 1 710 1 chr6A.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 913 0.112606 CCTCCATCTAGTCCCCGCTA 59.887 60.0 0.00 0.0 0.0 4.26 F
1081 1276 0.033405 CTTCTACTCCCTCCGTCCCA 60.033 60.0 0.00 0.0 0.0 4.37 F
1411 1614 0.037590 TAGGGCGGCATCAAGTTGTT 59.962 50.0 12.47 0.0 0.0 2.83 F
2055 2273 0.097674 GGTGATGCGATTGACAGTGC 59.902 55.0 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1992 1.070134 AGCAAACTCGTCCTTACAGCA 59.930 47.619 0.00 0.0 0.00 4.41 R
2844 3134 1.890876 TAGCTTGTTGAATGCGGTGT 58.109 45.000 0.00 0.0 0.00 4.16 R
3093 3404 0.112412 GGAAGGCAAAGGAAGGGACA 59.888 55.000 0.00 0.0 0.00 4.02 R
3855 4197 0.465097 ATGCTGAGCAGGGCACATAC 60.465 55.000 14.36 0.0 43.65 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 6.712241 TCTTTCACAATCGATGAACTCTTC 57.288 37.500 0.00 0.00 35.82 2.87
106 111 9.203668 CGATGAACTTTTTCTAAATCGATGAAG 57.796 33.333 0.00 0.00 37.35 3.02
144 149 9.918630 ATTGATGAACTCTTTTTCAAAATCGAT 57.081 25.926 0.00 0.00 38.95 3.59
145 150 8.732413 TGATGAACTCTTTTTCAAAATCGATG 57.268 30.769 0.00 0.00 38.95 3.84
146 151 8.567104 TGATGAACTCTTTTTCAAAATCGATGA 58.433 29.630 0.00 0.00 38.95 2.92
147 152 9.398170 GATGAACTCTTTTTCAAAATCGATGAA 57.602 29.630 0.00 0.00 38.95 2.57
148 153 8.560576 TGAACTCTTTTTCAAAATCGATGAAC 57.439 30.769 0.00 0.00 36.57 3.18
149 154 8.405531 TGAACTCTTTTTCAAAATCGATGAACT 58.594 29.630 0.00 0.00 36.57 3.01
150 155 9.237846 GAACTCTTTTTCAAAATCGATGAACTT 57.762 29.630 0.00 0.00 36.57 2.66
151 156 9.586435 AACTCTTTTTCAAAATCGATGAACTTT 57.414 25.926 0.00 0.00 36.57 2.66
152 157 9.586435 ACTCTTTTTCAAAATCGATGAACTTTT 57.414 25.926 0.00 0.00 36.57 2.27
245 334 6.391227 AACCGATGAACTCTTTTCACAATT 57.609 33.333 0.00 0.00 0.00 2.32
557 741 2.182537 GGTCAACCGCGACCGTAT 59.817 61.111 8.23 0.00 45.77 3.06
709 896 3.083997 CGCCAACTAGGAGCCCCT 61.084 66.667 0.00 0.00 46.62 4.79
720 907 2.753319 GAGCCCCTCCATCTAGTCC 58.247 63.158 0.00 0.00 0.00 3.85
721 908 0.834261 GAGCCCCTCCATCTAGTCCC 60.834 65.000 0.00 0.00 0.00 4.46
722 909 1.843832 GCCCCTCCATCTAGTCCCC 60.844 68.421 0.00 0.00 0.00 4.81
723 910 1.534235 CCCCTCCATCTAGTCCCCG 60.534 68.421 0.00 0.00 0.00 5.73
726 913 0.112606 CCTCCATCTAGTCCCCGCTA 59.887 60.000 0.00 0.00 0.00 4.26
733 920 0.962489 CTAGTCCCCGCTACATCTGG 59.038 60.000 0.00 0.00 0.00 3.86
1069 1264 1.884579 TGTCGCCGTTCTTCTTCTACT 59.115 47.619 0.00 0.00 0.00 2.57
1070 1265 2.095364 TGTCGCCGTTCTTCTTCTACTC 60.095 50.000 0.00 0.00 0.00 2.59
1071 1266 1.471684 TCGCCGTTCTTCTTCTACTCC 59.528 52.381 0.00 0.00 0.00 3.85
1072 1267 1.469423 CGCCGTTCTTCTTCTACTCCC 60.469 57.143 0.00 0.00 0.00 4.30
1073 1268 1.826096 GCCGTTCTTCTTCTACTCCCT 59.174 52.381 0.00 0.00 0.00 4.20
1074 1269 2.159212 GCCGTTCTTCTTCTACTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
1075 1270 2.427812 CCGTTCTTCTTCTACTCCCTCC 59.572 54.545 0.00 0.00 0.00 4.30
1076 1271 2.097791 CGTTCTTCTTCTACTCCCTCCG 59.902 54.545 0.00 0.00 0.00 4.63
1077 1272 3.090790 GTTCTTCTTCTACTCCCTCCGT 58.909 50.000 0.00 0.00 0.00 4.69
1078 1273 3.002038 TCTTCTTCTACTCCCTCCGTC 57.998 52.381 0.00 0.00 0.00 4.79
1079 1274 2.025898 CTTCTTCTACTCCCTCCGTCC 58.974 57.143 0.00 0.00 0.00 4.79
1080 1275 0.258194 TCTTCTACTCCCTCCGTCCC 59.742 60.000 0.00 0.00 0.00 4.46
1081 1276 0.033405 CTTCTACTCCCTCCGTCCCA 60.033 60.000 0.00 0.00 0.00 4.37
1082 1277 0.410663 TTCTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
1083 1278 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
1084 1279 1.007963 TCTACTCCCTCCGTCCCAAAT 59.992 52.381 0.00 0.00 0.00 2.32
1085 1280 1.838077 CTACTCCCTCCGTCCCAAATT 59.162 52.381 0.00 0.00 0.00 1.82
1086 1281 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
1087 1282 1.558294 ACTCCCTCCGTCCCAAATTAC 59.442 52.381 0.00 0.00 0.00 1.89
1088 1283 1.838077 CTCCCTCCGTCCCAAATTACT 59.162 52.381 0.00 0.00 0.00 2.24
1089 1284 2.238898 CTCCCTCCGTCCCAAATTACTT 59.761 50.000 0.00 0.00 0.00 2.24
1090 1285 2.026636 TCCCTCCGTCCCAAATTACTTG 60.027 50.000 0.00 0.00 34.52 3.16
1091 1286 2.290705 CCCTCCGTCCCAAATTACTTGT 60.291 50.000 0.00 0.00 32.65 3.16
1092 1287 3.007635 CCTCCGTCCCAAATTACTTGTC 58.992 50.000 0.00 0.00 32.65 3.18
1093 1288 2.671396 CTCCGTCCCAAATTACTTGTCG 59.329 50.000 0.00 0.00 32.65 4.35
1094 1289 1.129811 CCGTCCCAAATTACTTGTCGC 59.870 52.381 0.00 0.00 32.65 5.19
1095 1290 1.801771 CGTCCCAAATTACTTGTCGCA 59.198 47.619 0.00 0.00 32.65 5.10
1096 1291 2.159707 CGTCCCAAATTACTTGTCGCAG 60.160 50.000 0.00 0.00 32.65 5.18
1097 1292 3.071479 GTCCCAAATTACTTGTCGCAGA 58.929 45.455 0.00 0.00 32.65 4.26
1098 1293 3.500680 GTCCCAAATTACTTGTCGCAGAA 59.499 43.478 0.00 0.00 39.69 3.02
1099 1294 4.023536 GTCCCAAATTACTTGTCGCAGAAA 60.024 41.667 0.00 0.00 39.69 2.52
1100 1295 4.764823 TCCCAAATTACTTGTCGCAGAAAT 59.235 37.500 0.00 0.00 39.69 2.17
1101 1296 4.858692 CCCAAATTACTTGTCGCAGAAATG 59.141 41.667 0.00 0.00 39.69 2.32
1102 1297 4.858692 CCAAATTACTTGTCGCAGAAATGG 59.141 41.667 0.00 0.00 39.69 3.16
1103 1298 5.335583 CCAAATTACTTGTCGCAGAAATGGA 60.336 40.000 0.00 0.00 39.69 3.41
1104 1299 6.324819 CAAATTACTTGTCGCAGAAATGGAT 58.675 36.000 0.00 0.00 39.69 3.41
1105 1300 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1106 1301 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1107 1302 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1108 1303 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1109 1304 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
1110 1305 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
1111 1306 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1112 1307 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
1113 1308 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
1114 1309 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
1115 1310 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
1116 1311 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
1117 1312 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1118 1313 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
1119 1314 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1146 1341 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
1147 1342 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
1148 1343 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
1149 1344 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
1150 1345 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
1151 1346 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
1152 1347 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
1153 1348 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
1154 1349 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
1155 1350 5.428253 ACATCCATACTTGCGACAAGTAAT 58.572 37.500 25.44 16.71 36.45 1.89
1156 1351 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
1157 1352 6.374333 ACATCCATACTTGCGACAAGTAATTT 59.626 34.615 25.44 13.70 36.45 1.82
1158 1353 6.176975 TCCATACTTGCGACAAGTAATTTG 57.823 37.500 25.44 20.61 42.68 2.32
1159 1354 5.123186 TCCATACTTGCGACAAGTAATTTGG 59.877 40.000 25.46 25.46 41.25 3.28
1160 1355 5.123186 CCATACTTGCGACAAGTAATTTGGA 59.877 40.000 26.28 13.61 41.25 3.53
1161 1356 6.348950 CCATACTTGCGACAAGTAATTTGGAA 60.349 38.462 26.28 13.14 41.25 3.53
1162 1357 4.855531 ACTTGCGACAAGTAATTTGGAAC 58.144 39.130 19.21 0.00 41.25 3.62
1163 1358 3.907894 TGCGACAAGTAATTTGGAACC 57.092 42.857 0.00 0.00 41.25 3.62
1164 1359 2.224549 TGCGACAAGTAATTTGGAACCG 59.775 45.455 0.00 0.00 41.25 4.44
1165 1360 2.481185 GCGACAAGTAATTTGGAACCGA 59.519 45.455 0.00 0.00 41.25 4.69
1166 1361 3.424433 GCGACAAGTAATTTGGAACCGAG 60.424 47.826 0.00 0.00 41.25 4.63
1167 1362 3.124636 CGACAAGTAATTTGGAACCGAGG 59.875 47.826 0.00 0.00 41.25 4.63
1168 1363 3.418047 ACAAGTAATTTGGAACCGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
1169 1364 3.073356 ACAAGTAATTTGGAACCGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
1170 1365 3.629142 AGTAATTTGGAACCGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
1171 1366 2.910977 AGTAATTTGGAACCGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1172 1367 4.098894 AGTAATTTGGAACCGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1173 1368 3.345508 AATTTGGAACCGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
1174 1369 2.019807 TTTGGAACCGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
1175 1370 2.905415 TTGGAACCGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
1216 1411 2.259204 CGGTGGACGCCGTTTAGA 59.741 61.111 15.63 0.00 46.11 2.10
1226 1421 1.660896 CGCCGTTTAGAAAACAACCGG 60.661 52.381 0.00 0.00 0.00 5.28
1265 1461 7.815068 ACAGTGTAGTAGTTCTTCATTGATGAC 59.185 37.037 0.00 0.00 35.75 3.06
1408 1609 0.328258 AACTAGGGCGGCATCAAGTT 59.672 50.000 12.47 8.75 0.00 2.66
1411 1614 0.037590 TAGGGCGGCATCAAGTTGTT 59.962 50.000 12.47 0.00 0.00 2.83
1417 1620 1.474330 GGCATCAAGTTGTTAGGGGG 58.526 55.000 2.11 0.00 0.00 5.40
1453 1656 4.785914 TGTATTGGAAGGGGATTGACACTA 59.214 41.667 0.00 0.00 0.00 2.74
1461 1664 2.509964 GGGGATTGACACTAACTGGGAT 59.490 50.000 0.00 0.00 0.00 3.85
1480 1689 5.896678 TGGGATTAGTGATATTTTTGGGGTG 59.103 40.000 0.00 0.00 0.00 4.61
1481 1690 5.221441 GGGATTAGTGATATTTTTGGGGTGC 60.221 44.000 0.00 0.00 0.00 5.01
1482 1691 5.598417 GGATTAGTGATATTTTTGGGGTGCT 59.402 40.000 0.00 0.00 0.00 4.40
1483 1692 6.239036 GGATTAGTGATATTTTTGGGGTGCTC 60.239 42.308 0.00 0.00 0.00 4.26
1484 1693 4.046286 AGTGATATTTTTGGGGTGCTCA 57.954 40.909 0.00 0.00 0.00 4.26
1489 1698 2.151502 TTTTTGGGGTGCTCAGTCAA 57.848 45.000 0.00 0.00 0.00 3.18
1493 1702 0.478072 TGGGGTGCTCAGTCAAATGT 59.522 50.000 0.00 0.00 0.00 2.71
1508 1717 5.539574 AGTCAAATGTGGTGGAAATTCATGA 59.460 36.000 0.00 0.00 0.00 3.07
1527 1736 3.992643 TGATTTTGTGTGCTTTGGGATG 58.007 40.909 0.00 0.00 0.00 3.51
1557 1767 2.098831 GTTTGGGTCTCGCGGTAGC 61.099 63.158 6.13 4.05 40.74 3.58
1571 1781 2.862921 GCGGTAGCTACACATTCCTAGC 60.863 54.545 24.75 11.21 41.01 3.42
1574 1784 3.006003 GGTAGCTACACATTCCTAGCTCC 59.994 52.174 24.75 0.00 43.78 4.70
1580 1790 3.110705 ACACATTCCTAGCTCCTGTCAT 58.889 45.455 0.00 0.00 0.00 3.06
1582 1792 4.018960 ACACATTCCTAGCTCCTGTCATTT 60.019 41.667 0.00 0.00 0.00 2.32
1586 1796 7.284034 CACATTCCTAGCTCCTGTCATTTTATT 59.716 37.037 0.00 0.00 0.00 1.40
1588 1798 8.689972 CATTCCTAGCTCCTGTCATTTTATTTT 58.310 33.333 0.00 0.00 0.00 1.82
1599 1809 7.280652 CCTGTCATTTTATTTTTATGGCTTGGG 59.719 37.037 0.00 0.00 0.00 4.12
1614 1824 3.243401 GGCTTGGGACTACTGTTTGTTTG 60.243 47.826 0.00 0.00 0.00 2.93
1625 1840 8.767478 ACTACTGTTTGTTTGTACGCTATAAT 57.233 30.769 0.00 0.00 0.00 1.28
1772 1990 1.067142 TGCGGAAAGTCGACATAAGCT 60.067 47.619 19.50 0.00 0.00 3.74
1774 1992 2.735762 GCGGAAAGTCGACATAAGCTCT 60.736 50.000 19.50 0.00 0.00 4.09
1877 2095 0.552848 CCTACCTGTTCCATGCCCAT 59.447 55.000 0.00 0.00 0.00 4.00
2055 2273 0.097674 GGTGATGCGATTGACAGTGC 59.902 55.000 0.00 0.00 0.00 4.40
2180 2398 0.766674 TGCCTACCCCAGTGTGTTCT 60.767 55.000 0.00 0.00 0.00 3.01
2185 2403 0.623723 ACCCCAGTGTGTTCTGTTGT 59.376 50.000 0.00 0.00 34.02 3.32
2209 2427 4.645535 TCACAAGACTTTCTCTTCATGGG 58.354 43.478 0.00 0.00 37.08 4.00
2351 2569 4.622701 AACTCAAAACTCAGTGTTCTGC 57.377 40.909 0.00 0.00 41.10 4.26
2458 2679 2.052782 ATATCCCCTTGTCGTTTGGC 57.947 50.000 0.00 0.00 0.00 4.52
2690 2965 9.283768 CTAGTTATGCCATGGATGTGTATTTTA 57.716 33.333 18.40 0.00 0.00 1.52
2711 2986 7.609760 TTTACATGATGGAGAACACACATAC 57.390 36.000 0.00 0.00 31.38 2.39
2844 3134 4.761739 CCAACCTGAAATGAAGCAACTCTA 59.238 41.667 0.00 0.00 0.00 2.43
3042 3351 8.091449 TGTTTTGTAAGCTTTTCTCCTTTTCAA 58.909 29.630 3.20 0.00 0.00 2.69
3051 3360 9.836864 AGCTTTTCTCCTTTTCAAAATTTATGT 57.163 25.926 0.00 0.00 0.00 2.29
3093 3404 8.143835 CCATCTTTGTAAAAATTGAAGTGAGGT 58.856 33.333 0.00 0.00 0.00 3.85
3274 3605 2.159430 CGCATTTGTGAACGATGAGGAA 59.841 45.455 0.00 0.00 0.00 3.36
3437 3768 2.037136 CGAGCTCCCAACTTGCAGG 61.037 63.158 8.47 0.00 0.00 4.85
3487 3818 0.176680 AGTACTGCGATGCCCTTGAG 59.823 55.000 0.00 0.00 0.00 3.02
3641 3975 5.221382 GGGATGAGCCTTATGTAACGTTCTA 60.221 44.000 2.82 0.00 36.66 2.10
3642 3976 5.690857 GGATGAGCCTTATGTAACGTTCTAC 59.309 44.000 2.82 0.00 0.00 2.59
3643 3977 5.909621 TGAGCCTTATGTAACGTTCTACT 57.090 39.130 2.82 0.00 0.00 2.57
3644 3978 5.888105 TGAGCCTTATGTAACGTTCTACTC 58.112 41.667 2.82 2.83 0.00 2.59
3645 3979 5.163581 TGAGCCTTATGTAACGTTCTACTCC 60.164 44.000 2.82 0.00 0.00 3.85
3646 3980 4.099113 AGCCTTATGTAACGTTCTACTCCC 59.901 45.833 2.82 0.00 0.00 4.30
3647 3981 4.099113 GCCTTATGTAACGTTCTACTCCCT 59.901 45.833 2.82 0.00 0.00 4.20
3648 3982 5.735638 GCCTTATGTAACGTTCTACTCCCTC 60.736 48.000 2.82 0.00 0.00 4.30
3649 3983 5.221204 CCTTATGTAACGTTCTACTCCCTCC 60.221 48.000 2.82 0.00 0.00 4.30
3650 3984 2.086869 TGTAACGTTCTACTCCCTCCG 58.913 52.381 2.82 0.00 0.00 4.63
3651 3985 2.087646 GTAACGTTCTACTCCCTCCGT 58.912 52.381 2.82 0.00 0.00 4.69
3652 3986 1.625511 AACGTTCTACTCCCTCCGTT 58.374 50.000 0.00 0.00 34.11 4.44
3653 3987 1.172175 ACGTTCTACTCCCTCCGTTC 58.828 55.000 0.00 0.00 0.00 3.95
3654 3988 1.271817 ACGTTCTACTCCCTCCGTTCT 60.272 52.381 0.00 0.00 0.00 3.01
3655 3989 1.132643 CGTTCTACTCCCTCCGTTCTG 59.867 57.143 0.00 0.00 0.00 3.02
3656 3990 2.444421 GTTCTACTCCCTCCGTTCTGA 58.556 52.381 0.00 0.00 0.00 3.27
3657 3991 2.824341 GTTCTACTCCCTCCGTTCTGAA 59.176 50.000 0.00 0.00 0.00 3.02
3658 3992 3.383698 TCTACTCCCTCCGTTCTGAAT 57.616 47.619 0.00 0.00 0.00 2.57
3659 3993 3.709587 TCTACTCCCTCCGTTCTGAATT 58.290 45.455 0.00 0.00 0.00 2.17
3660 3994 4.863548 TCTACTCCCTCCGTTCTGAATTA 58.136 43.478 0.00 0.00 0.00 1.40
3661 3995 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
3662 3996 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
3663 3997 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
3664 3998 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
3665 3999 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
3666 4000 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
3667 4001 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
3668 4002 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
3669 4003 2.734606 CCGTTCTGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
3670 4004 3.181530 CCGTTCTGAATTACTTGTCGCAG 60.182 47.826 0.00 0.00 0.00 5.18
3671 4005 3.181530 CGTTCTGAATTACTTGTCGCAGG 60.182 47.826 0.00 0.00 0.00 4.85
3672 4006 3.678056 TCTGAATTACTTGTCGCAGGT 57.322 42.857 0.00 0.91 0.00 4.00
3673 4007 4.794278 TCTGAATTACTTGTCGCAGGTA 57.206 40.909 0.00 0.00 0.00 3.08
3674 4008 5.339008 TCTGAATTACTTGTCGCAGGTAT 57.661 39.130 3.46 0.00 0.00 2.73
3675 4009 5.109210 TCTGAATTACTTGTCGCAGGTATG 58.891 41.667 3.46 0.00 0.00 2.39
3676 4010 4.188462 TGAATTACTTGTCGCAGGTATGG 58.812 43.478 3.46 0.00 0.00 2.74
3677 4011 4.081365 TGAATTACTTGTCGCAGGTATGGA 60.081 41.667 3.46 0.00 0.00 3.41
3678 4012 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
3679 4013 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
3680 4014 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
3681 4015 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
3682 4016 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
3683 4017 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
3684 4018 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
3685 4019 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
3686 4020 4.217767 TGTCGCAGGTATGGATGTATCTAC 59.782 45.833 0.00 0.00 0.00 2.59
3687 4021 4.217767 GTCGCAGGTATGGATGTATCTACA 59.782 45.833 0.00 0.00 40.98 2.74
3689 4023 5.105063 CGCAGGTATGGATGTATCTACATG 58.895 45.833 7.55 0.00 46.20 3.21
3690 4024 5.336770 CGCAGGTATGGATGTATCTACATGT 60.337 44.000 2.69 2.69 46.20 3.21
3691 4025 6.127730 CGCAGGTATGGATGTATCTACATGTA 60.128 42.308 7.55 5.25 46.20 2.29
3692 4026 7.416777 CGCAGGTATGGATGTATCTACATGTAT 60.417 40.741 5.91 0.00 46.20 2.29
3693 4027 8.260818 GCAGGTATGGATGTATCTACATGTATT 58.739 37.037 5.91 0.00 46.20 1.89
3720 4054 7.706281 AGTTCTAGATACATTCATTTCTGCG 57.294 36.000 0.00 0.00 0.00 5.18
3721 4055 7.492524 AGTTCTAGATACATTCATTTCTGCGA 58.507 34.615 0.00 0.00 0.00 5.10
3722 4056 7.436673 AGTTCTAGATACATTCATTTCTGCGAC 59.563 37.037 0.00 0.00 0.00 5.19
3723 4057 5.915196 TCTAGATACATTCATTTCTGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
3724 4058 4.682787 AGATACATTCATTTCTGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
3725 4059 4.742167 AGATACATTCATTTCTGCGACGAG 59.258 41.667 0.00 0.00 0.00 4.18
3726 4060 2.688507 ACATTCATTTCTGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
3727 4061 3.845178 ACATTCATTTCTGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
3728 4062 4.242475 ACATTCATTTCTGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
3729 4063 4.870426 ACATTCATTTCTGCGACGAGTAAT 59.130 37.500 0.00 0.00 0.00 1.89
3730 4064 5.351465 ACATTCATTTCTGCGACGAGTAATT 59.649 36.000 0.00 0.00 0.00 1.40
3731 4065 5.856126 TTCATTTCTGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
3732 4066 5.203358 TCATTTCTGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
3733 4067 4.092821 TCATTTCTGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
3734 4068 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
3735 4069 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
3736 4070 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
3737 4071 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3738 4072 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
3739 4073 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
3740 4074 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3741 4075 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3742 4076 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3743 4077 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3744 4078 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
3745 4079 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3746 4080 2.200373 AATTTGGAACGGAGGGAGTG 57.800 50.000 0.00 0.00 0.00 3.51
3801 4136 6.263168 GGAGCTGTTATGTACCAGCAAATAAT 59.737 38.462 19.68 2.70 42.60 1.28
3855 4197 5.606348 AATAAGCCTACCTGACTCTTCTG 57.394 43.478 0.00 0.00 0.00 3.02
3859 4201 3.957497 AGCCTACCTGACTCTTCTGTATG 59.043 47.826 0.00 0.00 0.00 2.39
3869 4321 1.208052 TCTTCTGTATGTGCCCTGCTC 59.792 52.381 0.00 0.00 0.00 4.26
3894 4346 5.179929 AGCATATTTCTGCCTTTTTGTTTGC 59.820 36.000 0.00 0.00 43.33 3.68
3964 4456 1.794714 TGGACTTAGAGGAGATGGCC 58.205 55.000 0.00 0.00 0.00 5.36
4029 4521 6.942005 TGTGTTGTTCTCCATCATAGAAACAT 59.058 34.615 0.00 0.00 34.86 2.71
4080 4677 1.541588 GTTGGTCAGTTCTCCAATGGC 59.458 52.381 0.00 0.00 44.03 4.40
4109 4706 4.771590 ATGTGTGTTTATGAGTTGGCAG 57.228 40.909 0.00 0.00 0.00 4.85
4111 4708 3.146066 GTGTGTTTATGAGTTGGCAGGA 58.854 45.455 0.00 0.00 0.00 3.86
4112 4709 3.758554 GTGTGTTTATGAGTTGGCAGGAT 59.241 43.478 0.00 0.00 0.00 3.24
4113 4710 4.009675 TGTGTTTATGAGTTGGCAGGATC 58.990 43.478 0.00 0.00 0.00 3.36
4114 4711 4.263462 TGTGTTTATGAGTTGGCAGGATCT 60.263 41.667 0.00 0.00 0.00 2.75
4115 4712 4.333926 GTGTTTATGAGTTGGCAGGATCTC 59.666 45.833 0.00 0.00 0.00 2.75
4116 4713 4.225942 TGTTTATGAGTTGGCAGGATCTCT 59.774 41.667 0.00 0.00 0.00 3.10
4117 4714 5.425217 TGTTTATGAGTTGGCAGGATCTCTA 59.575 40.000 0.00 1.83 0.00 2.43
4118 4715 6.070251 TGTTTATGAGTTGGCAGGATCTCTAA 60.070 38.462 0.00 6.11 0.00 2.10
4119 4716 4.686191 ATGAGTTGGCAGGATCTCTAAG 57.314 45.455 0.00 0.00 0.00 2.18
4120 4717 3.713003 TGAGTTGGCAGGATCTCTAAGA 58.287 45.455 0.00 0.00 0.00 2.10
4121 4718 3.449018 TGAGTTGGCAGGATCTCTAAGAC 59.551 47.826 0.00 0.00 0.00 3.01
4122 4719 2.769095 AGTTGGCAGGATCTCTAAGACC 59.231 50.000 0.00 0.00 0.00 3.85
4123 4720 1.403814 TGGCAGGATCTCTAAGACCG 58.596 55.000 0.00 0.00 0.00 4.79
4124 4721 1.342076 TGGCAGGATCTCTAAGACCGT 60.342 52.381 0.00 0.00 0.00 4.83
4158 4835 3.518992 TCCAGGTTTAAAGTTGAGGGG 57.481 47.619 0.00 0.00 0.00 4.79
4286 4966 3.954904 CTGCCAAGAGTAGTCTTAGGCTA 59.045 47.826 31.64 23.54 46.51 3.93
4294 4974 8.780249 CAAGAGTAGTCTTAGGCTAGAGATAAC 58.220 40.741 12.50 9.60 41.40 1.89
4315 5000 1.638529 AACTGGAGGAGAGGACAGTG 58.361 55.000 0.00 0.00 42.85 3.66
4333 5018 6.293845 GGACAGTGCATTCCTATGATTTGATC 60.294 42.308 0.00 0.00 33.37 2.92
4377 5062 6.138761 GTCATTTGCAGAGTAAACAGACAAG 58.861 40.000 8.81 0.00 31.30 3.16
4396 5081 3.425162 AGGTTTCTCCTGTTCCATCAC 57.575 47.619 0.00 0.00 46.19 3.06
4405 5090 4.525996 TCCTGTTCCATCACCACATTATG 58.474 43.478 0.00 0.00 0.00 1.90
4493 5184 1.526464 CCCGCAAACAATGAAAAGCAC 59.474 47.619 0.00 0.00 0.00 4.40
4511 5202 2.480759 GCACATGAATGATCCAAGGTGC 60.481 50.000 0.00 11.75 39.68 5.01
4520 5211 3.223435 TGATCCAAGGTGCCGTTTTTAA 58.777 40.909 0.00 0.00 0.00 1.52
4533 5224 4.753610 GCCGTTTTTAAGAGAGGTACAGTT 59.246 41.667 0.00 0.00 0.00 3.16
4542 5233 5.662674 AGAGAGGTACAGTTGAATACACC 57.337 43.478 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.698130 AGTTCACTGATTTTGAAAAAGAGTTCG 59.302 33.333 0.00 0.00 34.78 3.95
592 776 3.195698 CTAAACTCGCCCGCCTGC 61.196 66.667 0.00 0.00 0.00 4.85
706 893 2.210711 GCGGGGACTAGATGGAGGG 61.211 68.421 0.00 0.00 0.00 4.30
709 896 0.554305 TGTAGCGGGGACTAGATGGA 59.446 55.000 0.00 0.00 0.00 3.41
712 899 2.520069 CAGATGTAGCGGGGACTAGAT 58.480 52.381 0.00 0.00 0.00 1.98
713 900 1.478837 CCAGATGTAGCGGGGACTAGA 60.479 57.143 0.00 0.00 0.00 2.43
714 901 0.962489 CCAGATGTAGCGGGGACTAG 59.038 60.000 0.00 0.00 0.00 2.57
715 902 0.469331 CCCAGATGTAGCGGGGACTA 60.469 60.000 0.00 0.00 44.97 2.59
716 903 1.762460 CCCAGATGTAGCGGGGACT 60.762 63.158 0.00 0.00 44.97 3.85
717 904 2.822399 CCCAGATGTAGCGGGGAC 59.178 66.667 0.00 0.00 44.97 4.46
718 905 3.161450 GCCCAGATGTAGCGGGGA 61.161 66.667 9.56 0.00 44.97 4.81
719 906 4.609018 CGCCCAGATGTAGCGGGG 62.609 72.222 0.72 0.72 45.88 5.73
723 910 2.897350 GCACCGCCCAGATGTAGC 60.897 66.667 0.00 0.00 0.00 3.58
726 913 4.415150 CCAGCACCGCCCAGATGT 62.415 66.667 0.00 0.00 0.00 3.06
762 949 2.652095 CGTTCTGGTCCCCCGCTAA 61.652 63.158 0.00 0.00 0.00 3.09
798 985 1.006832 CTGGACAAATTACCGGCGAG 58.993 55.000 9.30 0.06 0.00 5.03
806 993 8.792830 AAGAAAATCTCGATCTGGACAAATTA 57.207 30.769 0.00 0.00 0.00 1.40
882 1072 0.981277 CCTACCCCACAACCCTCGAT 60.981 60.000 0.00 0.00 0.00 3.59
883 1073 1.611261 CCTACCCCACAACCCTCGA 60.611 63.158 0.00 0.00 0.00 4.04
917 1107 4.082523 TAGGCGGCTCACACCAGC 62.083 66.667 17.67 0.00 38.84 4.85
1042 1237 0.108615 AAGAACGGCGACAGGATCAG 60.109 55.000 16.62 0.00 0.00 2.90
1069 1264 1.961133 AGTAATTTGGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
1070 1265 2.290705 ACAAGTAATTTGGGACGGAGGG 60.291 50.000 0.00 0.00 41.25 4.30
1071 1266 3.007635 GACAAGTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 41.25 4.30
1072 1267 2.671396 CGACAAGTAATTTGGGACGGAG 59.329 50.000 0.00 0.00 41.25 4.63
1073 1268 2.690786 CGACAAGTAATTTGGGACGGA 58.309 47.619 0.00 0.00 41.25 4.69
1074 1269 1.129811 GCGACAAGTAATTTGGGACGG 59.870 52.381 0.00 0.00 41.25 4.79
1075 1270 1.801771 TGCGACAAGTAATTTGGGACG 59.198 47.619 0.00 0.00 41.25 4.79
1076 1271 3.071479 TCTGCGACAAGTAATTTGGGAC 58.929 45.455 0.00 0.00 41.25 4.46
1077 1272 3.410631 TCTGCGACAAGTAATTTGGGA 57.589 42.857 0.00 0.00 41.25 4.37
1078 1273 4.497473 TTTCTGCGACAAGTAATTTGGG 57.503 40.909 0.00 0.00 41.25 4.12
1079 1274 4.858692 CCATTTCTGCGACAAGTAATTTGG 59.141 41.667 0.00 0.00 41.25 3.28
1080 1275 5.698832 TCCATTTCTGCGACAAGTAATTTG 58.301 37.500 0.00 0.00 42.68 2.32
1081 1276 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
1082 1277 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1083 1278 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1084 1279 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1085 1280 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1086 1281 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1087 1282 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
1088 1283 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
1089 1284 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
1090 1285 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
1091 1286 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
1092 1287 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
1093 1288 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
1120 1315 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
1121 1316 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
1122 1317 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
1123 1318 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
1124 1319 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
1125 1320 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
1126 1321 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
1127 1322 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
1128 1323 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
1129 1324 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
1130 1325 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
1131 1326 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
1132 1327 3.334583 ACTTGTCGCAAGTATGGATGT 57.665 42.857 19.21 0.00 39.48 3.06
1133 1328 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
1134 1329 6.183360 CCAAATTACTTGTCGCAAGTATGGAT 60.183 38.462 26.28 18.05 34.60 3.41
1135 1330 5.123186 CCAAATTACTTGTCGCAAGTATGGA 59.877 40.000 26.28 17.13 34.60 3.41
1136 1331 5.123186 TCCAAATTACTTGTCGCAAGTATGG 59.877 40.000 25.46 25.46 34.26 2.74
1137 1332 6.176975 TCCAAATTACTTGTCGCAAGTATG 57.823 37.500 23.59 19.73 33.27 2.39
1138 1333 6.349033 GGTTCCAAATTACTTGTCGCAAGTAT 60.349 38.462 23.59 13.19 33.27 2.12
1139 1334 5.049267 GGTTCCAAATTACTTGTCGCAAGTA 60.049 40.000 20.95 20.95 32.65 2.24
1140 1335 4.261447 GGTTCCAAATTACTTGTCGCAAGT 60.261 41.667 22.53 22.53 32.65 3.16
1141 1336 4.226761 GGTTCCAAATTACTTGTCGCAAG 58.773 43.478 15.16 15.16 32.65 4.01
1142 1337 3.304123 CGGTTCCAAATTACTTGTCGCAA 60.304 43.478 0.00 0.00 32.65 4.85
1143 1338 2.224549 CGGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
1144 1339 2.481185 TCGGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
1145 1340 3.124636 CCTCGGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
1146 1341 3.439129 CCCTCGGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
1147 1342 3.073356 TCCCTCGGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
1148 1343 3.681593 TCCCTCGGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
1149 1344 3.329814 ACTCCCTCGGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
1150 1345 2.910977 ACTCCCTCGGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1151 1346 3.345508 ACTCCCTCGGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1152 1347 4.098894 AGTACTCCCTCGGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1153 1348 2.910977 AGTACTCCCTCGGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
1154 1349 2.547990 AGTACTCCCTCGGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1155 1350 2.019807 AGTACTCCCTCGGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1156 1351 2.905415 TAGTACTCCCTCGGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
1157 1352 3.461085 AGTATAGTACTCCCTCGGTTCCA 59.539 47.826 0.00 0.00 32.47 3.53
1158 1353 4.097551 AGTATAGTACTCCCTCGGTTCC 57.902 50.000 0.00 0.00 32.47 3.62
1169 1364 7.531716 GCTGCATAAATCGAGAGTATAGTACT 58.468 38.462 0.00 0.00 42.86 2.73
1170 1365 6.466413 CGCTGCATAAATCGAGAGTATAGTAC 59.534 42.308 0.00 0.00 0.00 2.73
1171 1366 6.370718 TCGCTGCATAAATCGAGAGTATAGTA 59.629 38.462 0.00 0.00 0.00 1.82
1172 1367 5.181433 TCGCTGCATAAATCGAGAGTATAGT 59.819 40.000 0.00 0.00 0.00 2.12
1173 1368 5.631992 TCGCTGCATAAATCGAGAGTATAG 58.368 41.667 0.00 0.00 0.00 1.31
1174 1369 5.622770 TCGCTGCATAAATCGAGAGTATA 57.377 39.130 0.00 0.00 0.00 1.47
1175 1370 4.505313 TCGCTGCATAAATCGAGAGTAT 57.495 40.909 0.00 0.00 0.00 2.12
1216 1411 7.424001 TGTTTCGATTATAAACCGGTTGTTTT 58.576 30.769 23.08 7.65 44.80 2.43
1230 1426 9.570488 GAAGAACTACTACACTGTTTCGATTAT 57.430 33.333 0.00 0.00 0.00 1.28
1236 1432 8.589335 TCAATGAAGAACTACTACACTGTTTC 57.411 34.615 0.00 0.00 0.00 2.78
1265 1461 3.947834 CCTGCTTTCTGTAATTACCCTGG 59.052 47.826 13.01 4.69 0.00 4.45
1417 1620 1.078426 AATACACCAGACCCGCAGC 60.078 57.895 0.00 0.00 0.00 5.25
1453 1656 6.611236 CCCCAAAAATATCACTAATCCCAGTT 59.389 38.462 0.00 0.00 0.00 3.16
1461 1664 5.575157 TGAGCACCCCAAAAATATCACTAA 58.425 37.500 0.00 0.00 0.00 2.24
1468 1671 3.517296 TGACTGAGCACCCCAAAAATA 57.483 42.857 0.00 0.00 0.00 1.40
1480 1689 1.896220 TCCACCACATTTGACTGAGC 58.104 50.000 0.00 0.00 0.00 4.26
1481 1690 5.009911 TGAATTTCCACCACATTTGACTGAG 59.990 40.000 0.00 0.00 0.00 3.35
1482 1691 4.892345 TGAATTTCCACCACATTTGACTGA 59.108 37.500 0.00 0.00 0.00 3.41
1483 1692 5.199024 TGAATTTCCACCACATTTGACTG 57.801 39.130 0.00 0.00 0.00 3.51
1484 1693 5.539574 TCATGAATTTCCACCACATTTGACT 59.460 36.000 0.00 0.00 0.00 3.41
1489 1698 7.173562 CACAAAATCATGAATTTCCACCACATT 59.826 33.333 5.76 0.00 36.54 2.71
1493 1702 5.990386 CACACAAAATCATGAATTTCCACCA 59.010 36.000 5.76 0.00 36.54 4.17
1508 1717 3.642848 AGTCATCCCAAAGCACACAAAAT 59.357 39.130 0.00 0.00 0.00 1.82
1527 1736 3.477530 AGACCCAAACTAGCACAAAGTC 58.522 45.455 0.00 0.00 0.00 3.01
1557 1767 3.701542 TGACAGGAGCTAGGAATGTGTAG 59.298 47.826 0.00 0.00 0.00 2.74
1571 1781 9.090692 CAAGCCATAAAAATAAAATGACAGGAG 57.909 33.333 0.00 0.00 0.00 3.69
1574 1784 8.040132 TCCCAAGCCATAAAAATAAAATGACAG 58.960 33.333 0.00 0.00 0.00 3.51
1580 1790 8.527810 CAGTAGTCCCAAGCCATAAAAATAAAA 58.472 33.333 0.00 0.00 0.00 1.52
1582 1792 7.179269 ACAGTAGTCCCAAGCCATAAAAATAA 58.821 34.615 0.00 0.00 0.00 1.40
1586 1796 4.650972 ACAGTAGTCCCAAGCCATAAAA 57.349 40.909 0.00 0.00 0.00 1.52
1588 1798 4.202524 ACAAACAGTAGTCCCAAGCCATAA 60.203 41.667 0.00 0.00 0.00 1.90
1599 1809 6.701432 ATAGCGTACAAACAAACAGTAGTC 57.299 37.500 0.00 0.00 0.00 2.59
1614 1824 6.911511 AGAGACTCGAAACAATTATAGCGTAC 59.088 38.462 0.00 0.00 0.00 3.67
1625 1840 6.677781 ACAAAATTCAGAGACTCGAAACAA 57.322 33.333 11.81 0.00 0.00 2.83
1772 1990 2.866460 GCAAACTCGTCCTTACAGCAGA 60.866 50.000 0.00 0.00 0.00 4.26
1774 1992 1.070134 AGCAAACTCGTCCTTACAGCA 59.930 47.619 0.00 0.00 0.00 4.41
1877 2095 1.663643 GTCATTTGCCGCAATCGAGTA 59.336 47.619 6.64 0.00 38.10 2.59
2055 2273 4.861102 AGGTCCAAATCTTTCAGCAAAG 57.139 40.909 0.00 0.00 40.56 2.77
2185 2403 5.512060 CCCATGAAGAGAAAGTCTTGTGAGA 60.512 44.000 0.00 0.00 46.21 3.27
2203 2421 4.658063 ACTCGATAAAACAAACCCCATGA 58.342 39.130 0.00 0.00 0.00 3.07
2209 2427 6.691388 GCATATCCAACTCGATAAAACAAACC 59.309 38.462 0.00 0.00 0.00 3.27
2351 2569 4.289342 TCAAAGCAACATGTGTCGATTTG 58.711 39.130 19.78 19.78 0.00 2.32
2434 2655 4.451096 CCAAACGACAAGGGGATATATTCG 59.549 45.833 0.00 0.39 0.00 3.34
2458 2679 4.814900 CCAAGAGACGGGACATCG 57.185 61.111 0.00 0.00 0.00 3.84
2672 2942 6.389830 TCATGTAAAATACACATCCATGGC 57.610 37.500 6.96 0.00 42.23 4.40
2690 2965 4.225942 AGGTATGTGTGTTCTCCATCATGT 59.774 41.667 0.00 0.00 0.00 3.21
2844 3134 1.890876 TAGCTTGTTGAATGCGGTGT 58.109 45.000 0.00 0.00 0.00 4.16
3051 3360 7.458397 ACAAAGATGGAAGGTAGAAATGTGTA 58.542 34.615 0.00 0.00 0.00 2.90
3093 3404 0.112412 GGAAGGCAAAGGAAGGGACA 59.888 55.000 0.00 0.00 0.00 4.02
3198 3526 6.838198 TGAACAATATGTTACGGATGTAGC 57.162 37.500 0.00 0.00 41.28 3.58
3201 3529 5.588246 TGCATGAACAATATGTTACGGATGT 59.412 36.000 0.00 0.00 41.28 3.06
3274 3605 3.695830 TCTGCAAATACCGACCTTCTT 57.304 42.857 0.00 0.00 0.00 2.52
3437 3768 2.863137 CAGCTCCTTTGAGAAGTATCGC 59.137 50.000 0.00 0.00 41.42 4.58
3487 3818 2.417239 TGTTGAACAACACGACTTGGTC 59.583 45.455 15.04 7.62 45.42 4.02
3641 3975 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
3642 3976 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3643 3977 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3644 3978 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3645 3979 3.612860 CGACAAGTAATTCAGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
3646 3980 3.060895 GCGACAAGTAATTCAGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
3647 3981 2.991190 GCGACAAGTAATTCAGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
3648 3982 2.734606 TGCGACAAGTAATTCAGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
3649 3983 3.181530 CCTGCGACAAGTAATTCAGAACG 60.182 47.826 0.00 0.00 0.00 3.95
3650 3984 3.746492 ACCTGCGACAAGTAATTCAGAAC 59.254 43.478 0.00 0.00 0.00 3.01
3651 3985 4.002906 ACCTGCGACAAGTAATTCAGAA 57.997 40.909 0.00 0.00 0.00 3.02
3652 3986 3.678056 ACCTGCGACAAGTAATTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
3653 3987 4.271049 CCATACCTGCGACAAGTAATTCAG 59.729 45.833 0.00 0.00 0.00 3.02
3654 3988 4.081365 TCCATACCTGCGACAAGTAATTCA 60.081 41.667 0.00 0.00 0.00 2.57
3655 3989 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
3656 3990 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
3657 3991 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
3658 3992 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
3659 3993 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
3660 3994 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
3661 3995 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
3662 3996 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
3663 3997 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
3664 3998 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
3665 3999 4.403734 TGTAGATACATCCATACCTGCGA 58.596 43.478 0.00 0.00 0.00 5.10
3666 4000 4.783764 TGTAGATACATCCATACCTGCG 57.216 45.455 0.00 0.00 0.00 5.18
3667 4001 6.042638 ACATGTAGATACATCCATACCTGC 57.957 41.667 0.00 0.00 44.57 4.85
3694 4028 9.249457 CGCAGAAATGAATGTATCTAGAACTAA 57.751 33.333 0.00 0.00 0.00 2.24
3695 4029 8.630037 TCGCAGAAATGAATGTATCTAGAACTA 58.370 33.333 0.00 0.00 0.00 2.24
3696 4030 7.436673 GTCGCAGAAATGAATGTATCTAGAACT 59.563 37.037 0.00 0.00 39.69 3.01
3697 4031 7.559845 GTCGCAGAAATGAATGTATCTAGAAC 58.440 38.462 0.00 0.00 39.69 3.01
3698 4032 6.417930 CGTCGCAGAAATGAATGTATCTAGAA 59.582 38.462 0.00 0.00 39.69 2.10
3699 4033 5.915196 CGTCGCAGAAATGAATGTATCTAGA 59.085 40.000 0.00 0.00 39.69 2.43
3700 4034 5.915196 TCGTCGCAGAAATGAATGTATCTAG 59.085 40.000 0.00 0.00 39.69 2.43
3701 4035 5.827666 TCGTCGCAGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 39.69 1.98
3702 4036 4.682787 TCGTCGCAGAAATGAATGTATCT 58.317 39.130 0.00 0.00 39.69 1.98
3703 4037 4.504461 ACTCGTCGCAGAAATGAATGTATC 59.496 41.667 0.00 0.00 39.69 2.24
3704 4038 4.433615 ACTCGTCGCAGAAATGAATGTAT 58.566 39.130 0.00 0.00 39.69 2.29
3705 4039 3.845178 ACTCGTCGCAGAAATGAATGTA 58.155 40.909 0.00 0.00 39.69 2.29
3706 4040 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
3707 4041 4.840401 TTACTCGTCGCAGAAATGAATG 57.160 40.909 0.00 0.00 39.69 2.67
3708 4042 6.250819 CAAATTACTCGTCGCAGAAATGAAT 58.749 36.000 0.00 0.00 39.69 2.57
3709 4043 5.390461 CCAAATTACTCGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
3710 4044 4.092821 CCAAATTACTCGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
3711 4045 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3712 4046 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3713 4047 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3714 4048 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3715 4049 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3716 4050 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3717 4051 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3718 4052 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
3719 4053 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3720 4054 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3721 4055 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3722 4056 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3723 4057 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3724 4058 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3725 4059 3.007635 CACTCCCTCCGTTCCAAATTAC 58.992 50.000 0.00 0.00 0.00 1.89
3726 4060 2.640826 ACACTCCCTCCGTTCCAAATTA 59.359 45.455 0.00 0.00 0.00 1.40
3727 4061 1.423921 ACACTCCCTCCGTTCCAAATT 59.576 47.619 0.00 0.00 0.00 1.82
3728 4062 1.064825 ACACTCCCTCCGTTCCAAAT 58.935 50.000 0.00 0.00 0.00 2.32
3729 4063 1.719529 TACACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3730 4064 1.553248 CATACACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
3731 4065 1.191535 CATACACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
3732 4066 1.192428 ACATACACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
3733 4067 3.446516 ACTAACATACACTCCCTCCGTTC 59.553 47.826 0.00 0.00 0.00 3.95
3734 4068 3.438183 ACTAACATACACTCCCTCCGTT 58.562 45.455 0.00 0.00 0.00 4.44
3735 4069 3.022406 GACTAACATACACTCCCTCCGT 58.978 50.000 0.00 0.00 0.00 4.69
3736 4070 3.021695 TGACTAACATACACTCCCTCCG 58.978 50.000 0.00 0.00 0.00 4.63
3737 4071 5.176592 GTTTGACTAACATACACTCCCTCC 58.823 45.833 0.00 0.00 36.71 4.30
3738 4072 5.790593 TGTTTGACTAACATACACTCCCTC 58.209 41.667 0.00 0.00 41.73 4.30
3739 4073 5.307196 ACTGTTTGACTAACATACACTCCCT 59.693 40.000 2.91 0.00 45.31 4.20
3740 4074 5.548406 ACTGTTTGACTAACATACACTCCC 58.452 41.667 2.91 0.00 45.31 4.30
3741 4075 6.565999 GCAACTGTTTGACTAACATACACTCC 60.566 42.308 2.91 0.00 45.31 3.85
3742 4076 6.018262 TGCAACTGTTTGACTAACATACACTC 60.018 38.462 2.91 0.00 45.31 3.51
3743 4077 5.820423 TGCAACTGTTTGACTAACATACACT 59.180 36.000 2.91 0.00 45.31 3.55
3744 4078 6.055231 TGCAACTGTTTGACTAACATACAC 57.945 37.500 2.91 0.00 45.31 2.90
3745 4079 6.484977 TGATGCAACTGTTTGACTAACATACA 59.515 34.615 2.91 1.05 45.31 2.29
3746 4080 6.898041 TGATGCAACTGTTTGACTAACATAC 58.102 36.000 2.91 0.00 45.31 2.39
3855 4197 0.465097 ATGCTGAGCAGGGCACATAC 60.465 55.000 14.36 0.00 43.65 2.39
3859 4201 1.336125 GAAATATGCTGAGCAGGGCAC 59.664 52.381 14.36 0.57 43.65 5.01
3869 4321 6.595794 CAAACAAAAAGGCAGAAATATGCTG 58.404 36.000 0.00 2.31 45.75 4.41
3894 4346 8.707938 TCACATCACAGTTTACATCATCTAAG 57.292 34.615 0.00 0.00 0.00 2.18
3964 4456 8.248117 GGTTACATACAACCAAACTACTGTAG 57.752 38.462 13.13 13.13 46.14 2.74
4016 4508 8.954950 ACTCTACCAGAAATGTTTCTATGATG 57.045 34.615 7.62 0.00 45.23 3.07
4029 4521 7.311092 TCAGGAACATAAACTCTACCAGAAA 57.689 36.000 0.00 0.00 0.00 2.52
4080 4677 6.748333 ACTCATAAACACACATTCAGGATG 57.252 37.500 0.00 0.00 41.71 3.51
4109 4706 4.342665 AGAATCCAACGGTCTTAGAGATCC 59.657 45.833 0.00 0.00 0.00 3.36
4111 4708 7.724506 TGTATAGAATCCAACGGTCTTAGAGAT 59.275 37.037 0.00 0.00 0.00 2.75
4112 4709 7.058525 TGTATAGAATCCAACGGTCTTAGAGA 58.941 38.462 0.00 0.00 0.00 3.10
4113 4710 7.273320 TGTATAGAATCCAACGGTCTTAGAG 57.727 40.000 0.00 0.00 0.00 2.43
4114 4711 7.039923 GGATGTATAGAATCCAACGGTCTTAGA 60.040 40.741 8.82 0.00 42.79 2.10
4115 4712 7.091443 GGATGTATAGAATCCAACGGTCTTAG 58.909 42.308 8.82 0.00 42.79 2.18
4116 4713 6.989659 GGATGTATAGAATCCAACGGTCTTA 58.010 40.000 8.82 0.00 42.79 2.10
4117 4714 5.855045 GGATGTATAGAATCCAACGGTCTT 58.145 41.667 8.82 0.00 42.79 3.01
4118 4715 5.470047 GGATGTATAGAATCCAACGGTCT 57.530 43.478 8.82 0.00 42.79 3.85
4286 4966 4.714308 CCTCTCCTCCAGTTTGTTATCTCT 59.286 45.833 0.00 0.00 0.00 3.10
4294 4974 1.974236 ACTGTCCTCTCCTCCAGTTTG 59.026 52.381 0.00 0.00 34.64 2.93
4315 5000 6.072618 CCTCTGTGATCAAATCATAGGAATGC 60.073 42.308 9.45 0.00 45.29 3.56
4333 5018 0.514691 GTCTTGCGCTTTCCTCTGTG 59.485 55.000 9.73 0.00 0.00 3.66
4388 5073 8.642935 TTTTAGTTCATAATGTGGTGATGGAA 57.357 30.769 0.00 0.00 0.00 3.53
4392 5077 7.981225 GCCATTTTTAGTTCATAATGTGGTGAT 59.019 33.333 0.00 0.00 0.00 3.06
4396 5081 8.034215 TCTTGCCATTTTTAGTTCATAATGTGG 58.966 33.333 0.00 0.00 0.00 4.17
4405 5090 7.440856 TGGTGATTTTCTTGCCATTTTTAGTTC 59.559 33.333 0.00 0.00 0.00 3.01
4426 5111 8.267183 ACTGAATGAATGTACTGATTATGGTGA 58.733 33.333 0.00 0.00 0.00 4.02
4493 5184 1.335810 CGGCACCTTGGATCATTCATG 59.664 52.381 0.00 0.00 0.00 3.07
4511 5202 5.987347 TCAACTGTACCTCTCTTAAAAACGG 59.013 40.000 0.00 0.00 0.00 4.44
4520 5211 5.047235 GTGGTGTATTCAACTGTACCTCTCT 60.047 44.000 0.00 0.00 31.63 3.10
4533 5224 4.336993 GTGGACAAACTTGTGGTGTATTCA 59.663 41.667 0.00 0.00 42.43 2.57
4542 5233 5.048991 GGGTACTATTGTGGACAAACTTGTG 60.049 44.000 0.00 0.00 42.43 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.