Multiple sequence alignment - TraesCS4A01G346400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G346400 chr4A 100.000 3568 0 0 1 3568 625247109 625243542 0.000000e+00 6589.0
1 TraesCS4A01G346400 chr4A 81.389 763 120 15 1683 2441 544619487 544618743 1.420000e-168 603.0
2 TraesCS4A01G346400 chr4A 95.833 96 4 0 1193 1288 115298502 115298597 4.770000e-34 156.0
3 TraesCS4A01G346400 chr1D 94.057 2036 87 8 1284 3289 479710613 479712644 0.000000e+00 3059.0
4 TraesCS4A01G346400 chr1D 95.538 493 22 0 606 1098 479709986 479710478 0.000000e+00 789.0
5 TraesCS4A01G346400 chr1D 93.189 323 21 1 256 577 479709612 479709934 1.160000e-129 473.0
6 TraesCS4A01G346400 chr1D 96.262 107 4 0 1097 1203 479710510 479710616 3.660000e-40 176.0
7 TraesCS4A01G346400 chr1D 92.683 82 5 1 3445 3526 479712802 479712882 2.250000e-22 117.0
8 TraesCS4A01G346400 chr7A 82.853 764 107 16 1683 2441 126872106 126872850 0.000000e+00 664.0
9 TraesCS4A01G346400 chr7A 86.997 323 40 2 575 896 507884013 507883692 2.620000e-96 363.0
10 TraesCS4A01G346400 chr7A 85.498 331 31 10 249 577 507884381 507884066 2.660000e-86 329.0
11 TraesCS4A01G346400 chr7A 80.952 294 39 8 259 550 296741143 296741421 2.160000e-52 217.0
12 TraesCS4A01G346400 chr7A 95.833 120 5 0 1681 1800 507883125 507883006 1.010000e-45 195.0
13 TraesCS4A01G346400 chr7A 91.150 113 9 1 1175 1287 5630893 5631004 6.170000e-33 152.0
14 TraesCS4A01G346400 chr2B 82.592 764 109 16 1683 2441 61028810 61028066 0.000000e+00 652.0
15 TraesCS4A01G346400 chr2B 80.946 761 126 15 1683 2433 2216740 2215989 5.130000e-163 584.0
16 TraesCS4A01G346400 chr2B 80.552 761 130 16 1683 2433 2149439 2150191 1.440000e-158 569.0
17 TraesCS4A01G346400 chr2B 79.878 328 56 8 256 577 61030293 61029970 7.700000e-57 231.0
18 TraesCS4A01G346400 chr2B 93.204 103 6 1 1200 1301 564272101 564271999 2.220000e-32 150.0
19 TraesCS4A01G346400 chr2B 95.652 92 4 0 1201 1292 134499546 134499637 7.980000e-32 148.0
20 TraesCS4A01G346400 chr2B 79.259 135 28 0 1794 1928 788527565 788527431 1.050000e-15 95.3
21 TraesCS4A01G346400 chr2A 88.550 524 57 3 575 1097 45089917 45089396 1.810000e-177 632.0
22 TraesCS4A01G346400 chr2A 82.045 763 115 13 1683 2441 756164454 756165198 6.500000e-177 630.0
23 TraesCS4A01G346400 chr2A 91.057 246 22 0 255 500 45090210 45089965 2.050000e-87 333.0
24 TraesCS4A01G346400 chr2A 94.958 119 6 0 1683 1801 45088846 45088728 1.690000e-43 187.0
25 TraesCS4A01G346400 chr2A 77.536 138 31 0 1788 1925 713445322 713445459 2.280000e-12 84.2
26 TraesCS4A01G346400 chr3A 80.865 763 128 15 1683 2434 43138408 43137653 5.130000e-163 584.0
27 TraesCS4A01G346400 chr3A 87.302 63 7 1 1785 1846 288604106 288604168 1.780000e-08 71.3
28 TraesCS4A01G346400 chr5A 80.779 770 127 15 1689 2445 626356967 626356206 1.850000e-162 582.0
29 TraesCS4A01G346400 chr5A 79.918 244 44 5 258 499 626365890 626365650 1.320000e-39 174.0
30 TraesCS4A01G346400 chr1B 83.025 324 52 3 256 577 608355782 608356104 1.250000e-74 291.0
31 TraesCS4A01G346400 chr1B 86.364 198 22 2 1683 1880 608357288 608357480 1.000000e-50 211.0
32 TraesCS4A01G346400 chr1B 94.231 104 4 2 1186 1287 332837993 332837890 1.330000e-34 158.0
33 TraesCS4A01G346400 chr1B 76.596 141 32 1 1785 1924 553889558 553889698 3.820000e-10 76.8
34 TraesCS4A01G346400 chr3D 82.972 323 34 6 256 557 569979847 569979525 4.540000e-69 272.0
35 TraesCS4A01G346400 chr3D 90.090 111 11 0 1683 1793 569978345 569978235 1.030000e-30 145.0
36 TraesCS4A01G346400 chr5B 88.235 187 6 7 1 184 685994307 685994480 3.610000e-50 209.0
37 TraesCS4A01G346400 chr5B 100.000 31 0 0 198 228 685994481 685994511 1.380000e-04 58.4
38 TraesCS4A01G346400 chr6B 94.215 121 6 1 1681 1800 457313000 457313120 2.190000e-42 183.0
39 TraesCS4A01G346400 chr6B 81.643 207 34 4 259 464 654692250 654692453 6.130000e-38 169.0
40 TraesCS4A01G346400 chr6B 93.878 98 6 0 1190 1287 239602829 239602732 7.980000e-32 148.0
41 TraesCS4A01G346400 chr6B 82.609 138 24 0 1787 1924 2043899 2044036 4.840000e-24 122.0
42 TraesCS4A01G346400 chr6B 80.000 125 25 0 1804 1928 696088977 696088853 3.790000e-15 93.5
43 TraesCS4A01G346400 chr6D 97.826 92 1 1 1200 1290 459173414 459173505 1.330000e-34 158.0
44 TraesCS4A01G346400 chrUn 97.753 89 2 0 1199 1287 394816396 394816484 1.720000e-33 154.0
45 TraesCS4A01G346400 chr3B 90.351 114 8 3 1180 1292 819775538 819775649 2.870000e-31 147.0
46 TraesCS4A01G346400 chr3B 82.353 85 14 1 1785 1868 60627006 60626922 4.940000e-09 73.1
47 TraesCS4A01G346400 chr5D 94.444 72 1 1 1 69 543841742 543841813 1.350000e-19 108.0
48 TraesCS4A01G346400 chr5D 77.622 143 27 4 1788 1928 482850391 482850252 8.210000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G346400 chr4A 625243542 625247109 3567 True 6589.000000 6589 100.000000 1 3568 1 chr4A.!!$R2 3567
1 TraesCS4A01G346400 chr4A 544618743 544619487 744 True 603.000000 603 81.389000 1683 2441 1 chr4A.!!$R1 758
2 TraesCS4A01G346400 chr1D 479709612 479712882 3270 False 922.800000 3059 94.345800 256 3526 5 chr1D.!!$F1 3270
3 TraesCS4A01G346400 chr7A 126872106 126872850 744 False 664.000000 664 82.853000 1683 2441 1 chr7A.!!$F2 758
4 TraesCS4A01G346400 chr7A 507883006 507884381 1375 True 295.666667 363 89.442667 249 1800 3 chr7A.!!$R1 1551
5 TraesCS4A01G346400 chr2B 2215989 2216740 751 True 584.000000 584 80.946000 1683 2433 1 chr2B.!!$R1 750
6 TraesCS4A01G346400 chr2B 2149439 2150191 752 False 569.000000 569 80.552000 1683 2433 1 chr2B.!!$F1 750
7 TraesCS4A01G346400 chr2B 61028066 61030293 2227 True 441.500000 652 81.235000 256 2441 2 chr2B.!!$R4 2185
8 TraesCS4A01G346400 chr2A 756164454 756165198 744 False 630.000000 630 82.045000 1683 2441 1 chr2A.!!$F2 758
9 TraesCS4A01G346400 chr2A 45088728 45090210 1482 True 384.000000 632 91.521667 255 1801 3 chr2A.!!$R1 1546
10 TraesCS4A01G346400 chr3A 43137653 43138408 755 True 584.000000 584 80.865000 1683 2434 1 chr3A.!!$R1 751
11 TraesCS4A01G346400 chr5A 626356206 626356967 761 True 582.000000 582 80.779000 1689 2445 1 chr5A.!!$R1 756
12 TraesCS4A01G346400 chr1B 608355782 608357480 1698 False 251.000000 291 84.694500 256 1880 2 chr1B.!!$F2 1624
13 TraesCS4A01G346400 chr3D 569978235 569979847 1612 True 208.500000 272 86.531000 256 1793 2 chr3D.!!$R1 1537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.035820 TTCCCGATCCCAAAACGAGG 60.036 55.0 0.0 0.0 0.0 4.63 F
170 171 0.036765 CGATCCCAAAACGAGGACCA 60.037 55.0 0.0 0.0 34.2 4.02 F
581 666 0.172578 TATGTGCCGTCCTGTTCTCG 59.827 55.0 0.0 0.0 0.0 4.04 F
2130 2392 0.460811 CAGGCTTCTGCGTGCATCTA 60.461 55.0 0.0 0.0 45.9 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 1675 0.114954 TTTGCCCTGCCCAGAAATCT 59.885 50.0 0.00 0.0 0.00 2.40 R
2098 2360 0.619832 AAGCCTGATCAGAGCTGGGA 60.620 55.0 28.34 0.0 35.90 4.37 R
2423 2685 0.179048 TATTGGCCTGGATGTCAGCG 60.179 55.0 3.32 0.0 42.05 5.18 R
3024 3287 0.030638 CTTCCACGTTGCCACCAAAG 59.969 55.0 0.00 0.0 36.65 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 2.870372 GCCCAATGCGACTGTGTC 59.130 61.111 0.00 0.00 0.00 3.67
114 115 1.672356 GCCCAATGCGACTGTGTCT 60.672 57.895 0.00 0.00 0.00 3.41
115 116 1.237285 GCCCAATGCGACTGTGTCTT 61.237 55.000 0.00 0.00 0.00 3.01
116 117 1.238439 CCCAATGCGACTGTGTCTTT 58.762 50.000 0.00 0.00 0.00 2.52
117 118 1.608590 CCCAATGCGACTGTGTCTTTT 59.391 47.619 0.00 0.00 0.00 2.27
118 119 2.605338 CCCAATGCGACTGTGTCTTTTG 60.605 50.000 0.00 0.00 0.00 2.44
119 120 2.605338 CCAATGCGACTGTGTCTTTTGG 60.605 50.000 0.00 0.00 32.08 3.28
120 121 0.593128 ATGCGACTGTGTCTTTTGGC 59.407 50.000 0.00 0.00 0.00 4.52
121 122 0.746204 TGCGACTGTGTCTTTTGGCA 60.746 50.000 0.00 0.00 0.00 4.92
122 123 0.593128 GCGACTGTGTCTTTTGGCAT 59.407 50.000 0.00 0.00 35.98 4.40
123 124 1.804151 GCGACTGTGTCTTTTGGCATA 59.196 47.619 0.00 0.00 35.98 3.14
124 125 2.159653 GCGACTGTGTCTTTTGGCATAG 60.160 50.000 0.00 0.00 46.65 2.23
125 126 2.416547 CGACTGTGTCTTTTGGCATAGG 59.583 50.000 0.00 0.00 45.73 2.57
126 127 2.749621 GACTGTGTCTTTTGGCATAGGG 59.250 50.000 0.00 0.00 45.73 3.53
127 128 2.094675 CTGTGTCTTTTGGCATAGGGG 58.905 52.381 0.00 0.00 39.21 4.79
128 129 1.707989 TGTGTCTTTTGGCATAGGGGA 59.292 47.619 0.00 0.00 35.98 4.81
129 130 2.109128 TGTGTCTTTTGGCATAGGGGAA 59.891 45.455 0.00 0.00 35.98 3.97
130 131 3.245586 TGTGTCTTTTGGCATAGGGGAAT 60.246 43.478 0.00 0.00 35.98 3.01
131 132 3.769300 GTGTCTTTTGGCATAGGGGAATT 59.231 43.478 0.00 0.00 35.98 2.17
132 133 3.768757 TGTCTTTTGGCATAGGGGAATTG 59.231 43.478 0.00 0.00 0.00 2.32
133 134 3.132824 GTCTTTTGGCATAGGGGAATTGG 59.867 47.826 0.00 0.00 0.00 3.16
134 135 2.173126 TTTGGCATAGGGGAATTGGG 57.827 50.000 0.00 0.00 0.00 4.12
135 136 0.398381 TTGGCATAGGGGAATTGGGC 60.398 55.000 0.00 0.00 0.00 5.36
136 137 1.533994 GGCATAGGGGAATTGGGCC 60.534 63.158 0.00 0.00 0.00 5.80
137 138 1.903404 GCATAGGGGAATTGGGCCG 60.903 63.158 0.00 0.00 0.00 6.13
138 139 1.536676 CATAGGGGAATTGGGCCGT 59.463 57.895 0.00 0.00 0.00 5.68
139 140 0.106217 CATAGGGGAATTGGGCCGTT 60.106 55.000 0.00 0.00 0.00 4.44
140 141 0.106217 ATAGGGGAATTGGGCCGTTG 60.106 55.000 0.00 0.00 0.00 4.10
141 142 2.847366 TAGGGGAATTGGGCCGTTGC 62.847 60.000 0.00 1.30 0.00 4.17
142 143 4.128388 GGGAATTGGGCCGTTGCG 62.128 66.667 0.00 0.00 38.85 4.85
143 144 3.370231 GGAATTGGGCCGTTGCGT 61.370 61.111 0.00 0.00 38.85 5.24
144 145 2.041686 GGAATTGGGCCGTTGCGTA 61.042 57.895 0.00 0.00 38.85 4.42
145 146 1.427819 GAATTGGGCCGTTGCGTAG 59.572 57.895 0.00 0.00 38.85 3.51
146 147 1.988834 GAATTGGGCCGTTGCGTAGG 61.989 60.000 0.00 0.00 38.85 3.18
147 148 2.757980 AATTGGGCCGTTGCGTAGGT 62.758 55.000 0.00 0.00 38.85 3.08
148 149 2.757980 ATTGGGCCGTTGCGTAGGTT 62.758 55.000 0.00 0.00 38.85 3.50
149 150 3.122971 GGGCCGTTGCGTAGGTTC 61.123 66.667 0.00 0.00 38.85 3.62
150 151 3.122971 GGCCGTTGCGTAGGTTCC 61.123 66.667 0.00 0.00 38.85 3.62
151 152 3.122971 GCCGTTGCGTAGGTTCCC 61.123 66.667 0.00 0.00 0.00 3.97
152 153 2.812178 CCGTTGCGTAGGTTCCCG 60.812 66.667 0.00 0.00 0.00 5.14
153 154 2.259204 CGTTGCGTAGGTTCCCGA 59.741 61.111 0.00 0.00 0.00 5.14
154 155 1.153706 CGTTGCGTAGGTTCCCGAT 60.154 57.895 0.00 0.00 0.00 4.18
155 156 1.143969 CGTTGCGTAGGTTCCCGATC 61.144 60.000 0.00 0.00 0.00 3.69
156 157 0.808847 GTTGCGTAGGTTCCCGATCC 60.809 60.000 0.00 0.00 0.00 3.36
157 158 1.963464 TTGCGTAGGTTCCCGATCCC 61.963 60.000 0.00 0.00 0.00 3.85
158 159 2.428925 GCGTAGGTTCCCGATCCCA 61.429 63.158 0.00 0.00 0.00 4.37
159 160 1.963464 GCGTAGGTTCCCGATCCCAA 61.963 60.000 0.00 0.00 0.00 4.12
160 161 0.538118 CGTAGGTTCCCGATCCCAAA 59.462 55.000 0.00 0.00 0.00 3.28
161 162 1.065998 CGTAGGTTCCCGATCCCAAAA 60.066 52.381 0.00 0.00 0.00 2.44
162 163 2.362736 GTAGGTTCCCGATCCCAAAAC 58.637 52.381 0.00 0.00 0.00 2.43
163 164 0.322187 AGGTTCCCGATCCCAAAACG 60.322 55.000 0.00 0.00 0.00 3.60
164 165 0.321830 GGTTCCCGATCCCAAAACGA 60.322 55.000 0.00 0.00 0.00 3.85
165 166 1.084289 GTTCCCGATCCCAAAACGAG 58.916 55.000 0.00 0.00 0.00 4.18
166 167 0.035820 TTCCCGATCCCAAAACGAGG 60.036 55.000 0.00 0.00 0.00 4.63
167 168 0.905809 TCCCGATCCCAAAACGAGGA 60.906 55.000 0.00 0.00 36.36 3.71
168 169 0.743345 CCCGATCCCAAAACGAGGAC 60.743 60.000 0.00 0.00 34.20 3.85
169 170 0.743345 CCGATCCCAAAACGAGGACC 60.743 60.000 0.00 0.00 34.20 4.46
170 171 0.036765 CGATCCCAAAACGAGGACCA 60.037 55.000 0.00 0.00 34.20 4.02
171 172 1.739067 GATCCCAAAACGAGGACCAG 58.261 55.000 0.00 0.00 34.20 4.00
172 173 0.322546 ATCCCAAAACGAGGACCAGC 60.323 55.000 0.00 0.00 34.20 4.85
173 174 1.971695 CCCAAAACGAGGACCAGCC 60.972 63.158 0.00 0.00 0.00 4.85
174 175 1.971695 CCAAAACGAGGACCAGCCC 60.972 63.158 0.00 0.00 37.37 5.19
175 176 1.228124 CAAAACGAGGACCAGCCCA 60.228 57.895 0.00 0.00 37.37 5.36
176 177 1.073199 AAAACGAGGACCAGCCCAG 59.927 57.895 0.00 0.00 37.37 4.45
177 178 3.553095 AAACGAGGACCAGCCCAGC 62.553 63.158 0.00 0.00 37.37 4.85
180 181 4.154347 GAGGACCAGCCCAGCGAG 62.154 72.222 0.00 0.00 37.37 5.03
212 213 4.776322 CCCGCATCGCTGGTTGGA 62.776 66.667 0.00 0.00 0.00 3.53
213 214 3.499737 CCGCATCGCTGGTTGGAC 61.500 66.667 0.00 0.00 0.00 4.02
214 215 3.499737 CGCATCGCTGGTTGGACC 61.500 66.667 0.00 0.00 39.22 4.46
238 239 2.726241 CGCAGCCTTTTGTTTTTCTAGC 59.274 45.455 0.00 0.00 0.00 3.42
239 240 2.726241 GCAGCCTTTTGTTTTTCTAGCG 59.274 45.455 0.00 0.00 0.00 4.26
240 241 3.550030 GCAGCCTTTTGTTTTTCTAGCGA 60.550 43.478 0.00 0.00 0.00 4.93
241 242 4.606961 CAGCCTTTTGTTTTTCTAGCGAA 58.393 39.130 0.00 0.00 0.00 4.70
242 243 5.222631 CAGCCTTTTGTTTTTCTAGCGAAT 58.777 37.500 0.00 0.00 0.00 3.34
243 244 6.378582 CAGCCTTTTGTTTTTCTAGCGAATA 58.621 36.000 0.00 0.00 0.00 1.75
244 245 6.305638 CAGCCTTTTGTTTTTCTAGCGAATAC 59.694 38.462 0.00 0.00 0.00 1.89
245 246 6.206829 AGCCTTTTGTTTTTCTAGCGAATACT 59.793 34.615 0.00 0.00 0.00 2.12
246 247 6.523546 GCCTTTTGTTTTTCTAGCGAATACTC 59.476 38.462 0.00 0.00 0.00 2.59
247 248 7.021790 CCTTTTGTTTTTCTAGCGAATACTCC 58.978 38.462 0.00 0.00 0.00 3.85
248 249 6.490566 TTTGTTTTTCTAGCGAATACTCCC 57.509 37.500 0.00 0.00 0.00 4.30
249 250 5.155278 TGTTTTTCTAGCGAATACTCCCA 57.845 39.130 0.00 0.00 0.00 4.37
250 251 5.741011 TGTTTTTCTAGCGAATACTCCCAT 58.259 37.500 0.00 0.00 0.00 4.00
251 252 6.880484 TGTTTTTCTAGCGAATACTCCCATA 58.120 36.000 0.00 0.00 0.00 2.74
252 253 7.506114 TGTTTTTCTAGCGAATACTCCCATAT 58.494 34.615 0.00 0.00 0.00 1.78
253 254 7.441157 TGTTTTTCTAGCGAATACTCCCATATG 59.559 37.037 0.00 0.00 0.00 1.78
355 356 0.457851 AGCTGGACTGTCAGATACGC 59.542 55.000 6.91 4.05 36.93 4.42
362 363 0.796870 CTGTCAGATACGCGCGTCAA 60.797 55.000 41.35 24.77 0.00 3.18
423 425 3.998672 GACGTGGGGTCGGCTTGA 61.999 66.667 0.00 0.00 35.61 3.02
424 426 3.310860 GACGTGGGGTCGGCTTGAT 62.311 63.158 0.00 0.00 35.61 2.57
493 515 1.338200 CGTTGGCTTTCTGACTAGGCT 60.338 52.381 0.00 0.00 37.78 4.58
563 588 4.710695 CGTGACGGTGGCGCAGTA 62.711 66.667 10.83 0.00 0.00 2.74
577 602 3.532896 CAGTATGTGCCGTCCTGTT 57.467 52.632 0.00 0.00 0.00 3.16
578 603 1.359848 CAGTATGTGCCGTCCTGTTC 58.640 55.000 0.00 0.00 0.00 3.18
579 604 1.066858 CAGTATGTGCCGTCCTGTTCT 60.067 52.381 0.00 0.00 0.00 3.01
581 666 0.172578 TATGTGCCGTCCTGTTCTCG 59.827 55.000 0.00 0.00 0.00 4.04
583 668 4.373116 TGCCGTCCTGTTCTCGCC 62.373 66.667 0.00 0.00 0.00 5.54
592 677 1.550976 CCTGTTCTCGCCTTTCCTAGT 59.449 52.381 0.00 0.00 0.00 2.57
599 684 3.769844 TCTCGCCTTTCCTAGTTCATTCT 59.230 43.478 0.00 0.00 0.00 2.40
602 687 4.710375 TCGCCTTTCCTAGTTCATTCTAGT 59.290 41.667 0.00 0.00 36.59 2.57
652 743 1.609501 GGGGGACAAAAAGGGGAGC 60.610 63.158 0.00 0.00 0.00 4.70
750 841 2.173569 GGGTATGGAGTTCCTGCTTGAT 59.826 50.000 0.00 0.00 36.82 2.57
758 849 2.360350 CCTGCTTGATGCGGTGGT 60.360 61.111 0.00 0.00 46.27 4.16
774 865 2.826003 GGTCAGGTTGGTTCCGGGT 61.826 63.158 0.00 0.00 0.00 5.28
792 883 4.035675 CCGGGTAGATCTCTGCAAATTTTC 59.964 45.833 0.00 0.00 0.00 2.29
817 909 3.853831 TTTAGATTACAGACGGCGACA 57.146 42.857 16.62 0.00 0.00 4.35
859 951 3.654806 ACTGCCCTGCCTATAAATCTGAT 59.345 43.478 0.00 0.00 0.00 2.90
860 953 4.105377 ACTGCCCTGCCTATAAATCTGATT 59.895 41.667 0.00 0.00 0.00 2.57
873 966 0.817654 TCTGATTCTGATGCCGTCGT 59.182 50.000 0.00 0.00 0.00 4.34
980 1073 1.002011 GGAGAAGGGGAGTGCAACC 60.002 63.158 0.00 0.00 37.80 3.77
1044 1137 1.038130 GGAGGACGAAGGAGCAGCTA 61.038 60.000 0.00 0.00 0.00 3.32
1212 1345 7.735326 ATGTTTAGTATGTACTCCCTCTGTT 57.265 36.000 0.00 0.00 37.73 3.16
1213 1346 7.166691 TGTTTAGTATGTACTCCCTCTGTTC 57.833 40.000 0.00 0.00 37.73 3.18
1214 1347 6.154021 TGTTTAGTATGTACTCCCTCTGTTCC 59.846 42.308 0.00 0.00 37.73 3.62
1215 1348 4.332683 AGTATGTACTCCCTCTGTTCCA 57.667 45.455 0.00 0.00 0.00 3.53
1216 1349 4.684724 AGTATGTACTCCCTCTGTTCCAA 58.315 43.478 0.00 0.00 0.00 3.53
1217 1350 5.091552 AGTATGTACTCCCTCTGTTCCAAA 58.908 41.667 0.00 0.00 0.00 3.28
1218 1351 4.993705 ATGTACTCCCTCTGTTCCAAAA 57.006 40.909 0.00 0.00 0.00 2.44
1219 1352 4.993705 TGTACTCCCTCTGTTCCAAAAT 57.006 40.909 0.00 0.00 0.00 1.82
1220 1353 6.636454 ATGTACTCCCTCTGTTCCAAAATA 57.364 37.500 0.00 0.00 0.00 1.40
1221 1354 6.049955 TGTACTCCCTCTGTTCCAAAATAG 57.950 41.667 0.00 0.00 0.00 1.73
1222 1355 5.783360 TGTACTCCCTCTGTTCCAAAATAGA 59.217 40.000 0.00 0.00 32.42 1.98
1223 1356 6.443849 TGTACTCCCTCTGTTCCAAAATAGAT 59.556 38.462 0.00 0.00 32.88 1.98
1224 1357 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
1225 1358 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
1226 1359 6.159398 ACTCCCTCTGTTCCAAAATAGATGAT 59.841 38.462 0.00 0.00 32.88 2.45
1227 1360 6.595682 TCCCTCTGTTCCAAAATAGATGATC 58.404 40.000 0.00 0.00 32.88 2.92
1228 1361 5.767168 CCCTCTGTTCCAAAATAGATGATCC 59.233 44.000 0.00 0.00 32.88 3.36
1229 1362 6.359804 CCTCTGTTCCAAAATAGATGATCCA 58.640 40.000 0.00 0.00 32.88 3.41
1230 1363 6.830324 CCTCTGTTCCAAAATAGATGATCCAA 59.170 38.462 0.00 0.00 32.88 3.53
1231 1364 7.201767 CCTCTGTTCCAAAATAGATGATCCAAC 60.202 40.741 0.00 0.00 32.88 3.77
1232 1365 7.405292 TCTGTTCCAAAATAGATGATCCAACT 58.595 34.615 0.00 0.00 28.72 3.16
1233 1366 7.890127 TCTGTTCCAAAATAGATGATCCAACTT 59.110 33.333 0.00 0.00 28.72 2.66
1234 1367 8.421249 TGTTCCAAAATAGATGATCCAACTTT 57.579 30.769 0.00 0.00 0.00 2.66
1235 1368 8.306038 TGTTCCAAAATAGATGATCCAACTTTG 58.694 33.333 0.00 0.00 0.00 2.77
1236 1369 8.306761 GTTCCAAAATAGATGATCCAACTTTGT 58.693 33.333 0.00 0.00 0.00 2.83
1237 1370 9.527157 TTCCAAAATAGATGATCCAACTTTGTA 57.473 29.630 0.00 0.00 0.00 2.41
1238 1371 8.956426 TCCAAAATAGATGATCCAACTTTGTAC 58.044 33.333 0.00 0.00 0.00 2.90
1239 1372 8.960591 CCAAAATAGATGATCCAACTTTGTACT 58.039 33.333 0.00 0.00 0.00 2.73
1262 1395 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
1263 1396 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
1264 1397 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
1265 1398 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
1266 1399 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
1267 1400 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
1268 1401 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
1269 1402 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
1270 1403 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1271 1404 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1272 1405 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1273 1406 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1274 1407 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1275 1408 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1276 1409 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1277 1410 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1278 1411 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1279 1412 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1280 1413 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1281 1414 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1282 1415 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1304 1438 4.174009 AGTACAAATGAGACACGAATCCG 58.826 43.478 0.00 0.00 42.50 4.18
1383 1571 2.747396 AACTTTACATGACCGCCGTA 57.253 45.000 0.00 0.00 0.00 4.02
1469 1664 5.461032 ACTGCTGCTATTAGGAGTATCAC 57.539 43.478 13.03 0.00 45.85 3.06
1487 1682 9.160496 GAGTATCACATCAGAAAACAGATTTCT 57.840 33.333 0.00 0.00 46.71 2.52
1731 1964 1.134965 CGCTCTCGAGGTTTCAATCCT 60.135 52.381 13.56 0.00 38.10 3.24
1762 1995 1.963338 GCAGCCTGACAAGAGCGTT 60.963 57.895 0.00 0.00 0.00 4.84
2080 2342 2.994990 CGGAAACCGGAAACAGTCA 58.005 52.632 9.46 0.00 44.15 3.41
2089 2351 1.609061 CGGAAACAGTCAGTCCTGCAT 60.609 52.381 0.00 0.00 35.83 3.96
2098 2360 3.517100 AGTCAGTCCTGCATATGTGAGTT 59.483 43.478 4.29 0.00 0.00 3.01
2130 2392 0.460811 CAGGCTTCTGCGTGCATCTA 60.461 55.000 0.00 0.00 45.90 1.98
2232 2494 7.071196 ACTGGCCTTCTCATAAACACATAGATA 59.929 37.037 3.32 0.00 0.00 1.98
2301 2563 4.899502 CCTTGGGAAGGTATACAGCATAG 58.100 47.826 5.01 0.00 43.95 2.23
2325 2587 1.542547 GGAGCTTCTTTGGTTCGGTCA 60.543 52.381 0.00 0.00 0.00 4.02
2359 2621 1.309499 ACGAAGAGGACGCTCAGGAG 61.309 60.000 0.00 0.00 0.00 3.69
2423 2685 2.287009 CCAAAAGACACTTGAGGCGTTC 60.287 50.000 0.00 0.00 0.00 3.95
2442 2704 0.179048 CGCTGACATCCAGGCCAATA 60.179 55.000 5.01 0.00 43.13 1.90
2461 2723 5.939296 CCAATACCATTGCCAAACTGATTTT 59.061 36.000 0.00 0.00 0.00 1.82
2575 2837 3.610911 GTTCGTGGGATTGAATCTTCCT 58.389 45.455 5.03 0.00 32.34 3.36
2580 2842 3.944015 GTGGGATTGAATCTTCCTGTGAG 59.056 47.826 5.03 0.00 32.34 3.51
2610 2873 5.467063 CCTAGCTTTTTCTGAACTTCGAAGT 59.533 40.000 24.93 24.93 42.04 3.01
2638 2901 1.334556 GCATATGATTCAGCGGCACAA 59.665 47.619 6.97 0.00 0.00 3.33
2651 2914 1.731709 CGGCACAACGATTCTGAATCA 59.268 47.619 25.32 0.00 37.78 2.57
2692 2955 4.148825 CTTCACCTCCCTCCCGCG 62.149 72.222 0.00 0.00 0.00 6.46
2721 2984 3.144120 ATCTAGCGCCTGGAGCACG 62.144 63.158 24.28 13.97 44.04 5.34
2749 3012 1.933041 CCAGCGTATGTCGACGACG 60.933 63.158 28.54 28.54 45.82 5.12
2790 3053 0.658829 CGATCTGCGGCTAACTCTCG 60.659 60.000 0.00 0.00 36.03 4.04
2886 3149 0.039764 AGATGAGTCTGTCCACCGGA 59.960 55.000 9.46 0.00 32.13 5.14
2898 3161 1.553690 CCACCGGACTCTCACCCATT 61.554 60.000 9.46 0.00 0.00 3.16
2929 3192 1.784358 CATGGTGGGGCAAGATTCAT 58.216 50.000 0.00 0.00 0.00 2.57
2938 3201 3.099141 GGGCAAGATTCATGGGAAGAAA 58.901 45.455 0.00 0.00 36.25 2.52
2939 3202 3.515104 GGGCAAGATTCATGGGAAGAAAA 59.485 43.478 0.00 0.00 36.25 2.29
2952 3215 8.824783 TCATGGGAAGAAAAATTTGGTGATTAT 58.175 29.630 0.00 0.00 0.00 1.28
3001 3264 1.275291 GTAGCACTGGTAGTTCTGCCA 59.725 52.381 9.11 9.11 0.00 4.92
3011 3274 2.158959 GTTCTGCCATCGACGACCG 61.159 63.158 0.00 0.00 40.25 4.79
3075 3340 2.157738 GGAGGACATTATCAGCATGCC 58.842 52.381 15.66 0.00 34.76 4.40
3084 3349 1.439353 ATCAGCATGCCGCCTAAACG 61.439 55.000 15.66 0.00 44.04 3.60
3104 3369 2.223203 CGCCGCCGTATAATAGACTAGG 60.223 54.545 0.00 0.00 0.00 3.02
3108 3373 3.484886 CGCCGTATAATAGACTAGGTCGC 60.485 52.174 0.00 0.00 37.67 5.19
3257 3522 3.252458 GCATCCTTGAACCTTAAACACGT 59.748 43.478 0.00 0.00 0.00 4.49
3277 3542 2.243736 GTGGGGATCCATTCTGGGTTAA 59.756 50.000 15.23 0.00 46.09 2.01
3280 3545 3.897505 GGGGATCCATTCTGGGTTAATTG 59.102 47.826 15.23 0.00 38.32 2.32
3289 3554 3.686016 TCTGGGTTAATTGTCTGGCTTC 58.314 45.455 0.00 0.00 0.00 3.86
3290 3555 2.755103 CTGGGTTAATTGTCTGGCTTCC 59.245 50.000 0.00 0.00 0.00 3.46
3292 3557 3.181423 TGGGTTAATTGTCTGGCTTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
3293 3558 3.444034 GGGTTAATTGTCTGGCTTCCTTC 59.556 47.826 0.00 0.00 0.00 3.46
3294 3559 4.079253 GGTTAATTGTCTGGCTTCCTTCA 58.921 43.478 0.00 0.00 0.00 3.02
3295 3560 4.156739 GGTTAATTGTCTGGCTTCCTTCAG 59.843 45.833 0.00 0.00 0.00 3.02
3296 3561 3.515602 AATTGTCTGGCTTCCTTCAGT 57.484 42.857 0.00 0.00 33.13 3.41
3298 3563 2.260844 TGTCTGGCTTCCTTCAGTTG 57.739 50.000 0.00 0.00 33.13 3.16
3299 3564 1.768275 TGTCTGGCTTCCTTCAGTTGA 59.232 47.619 0.00 0.00 33.13 3.18
3300 3565 2.224378 TGTCTGGCTTCCTTCAGTTGAG 60.224 50.000 0.00 0.00 33.13 3.02
3302 3567 3.006967 GTCTGGCTTCCTTCAGTTGAGTA 59.993 47.826 0.00 0.00 33.13 2.59
3304 3569 3.740115 TGGCTTCCTTCAGTTGAGTAAC 58.260 45.455 0.00 0.00 37.06 2.50
3305 3570 3.075148 GGCTTCCTTCAGTTGAGTAACC 58.925 50.000 0.00 0.00 37.52 2.85
3306 3571 3.244596 GGCTTCCTTCAGTTGAGTAACCT 60.245 47.826 0.00 0.00 37.52 3.50
3307 3572 3.997681 GCTTCCTTCAGTTGAGTAACCTC 59.002 47.826 0.00 0.00 37.52 3.85
3308 3573 4.503296 GCTTCCTTCAGTTGAGTAACCTCA 60.503 45.833 0.00 0.00 45.95 3.86
3309 3574 5.799213 CTTCCTTCAGTTGAGTAACCTCAT 58.201 41.667 0.00 0.00 46.80 2.90
3310 3575 5.152623 TCCTTCAGTTGAGTAACCTCATG 57.847 43.478 0.00 0.00 46.80 3.07
3311 3576 3.686726 CCTTCAGTTGAGTAACCTCATGC 59.313 47.826 0.00 0.00 46.80 4.06
3312 3577 2.959516 TCAGTTGAGTAACCTCATGCG 58.040 47.619 0.00 0.00 46.80 4.73
3313 3578 2.002586 CAGTTGAGTAACCTCATGCGG 58.997 52.381 0.00 0.00 46.80 5.69
3314 3579 1.066143 AGTTGAGTAACCTCATGCGGG 60.066 52.381 6.69 4.88 46.80 6.13
3315 3580 0.981183 TTGAGTAACCTCATGCGGGT 59.019 50.000 6.69 1.14 46.80 5.28
3316 3581 0.535335 TGAGTAACCTCATGCGGGTC 59.465 55.000 6.69 0.00 42.80 4.46
3317 3582 0.535335 GAGTAACCTCATGCGGGTCA 59.465 55.000 6.69 0.00 37.67 4.02
3318 3583 0.981183 AGTAACCTCATGCGGGTCAA 59.019 50.000 6.69 0.00 35.83 3.18
3319 3584 1.066143 AGTAACCTCATGCGGGTCAAG 60.066 52.381 6.69 0.00 35.83 3.02
3320 3585 0.981183 TAACCTCATGCGGGTCAAGT 59.019 50.000 6.69 0.00 35.83 3.16
3321 3586 0.981183 AACCTCATGCGGGTCAAGTA 59.019 50.000 6.69 0.00 35.83 2.24
3322 3587 0.981183 ACCTCATGCGGGTCAAGTAA 59.019 50.000 6.69 0.00 30.15 2.24
3323 3588 1.338769 ACCTCATGCGGGTCAAGTAAC 60.339 52.381 6.69 0.00 30.15 2.50
3324 3589 1.338674 CCTCATGCGGGTCAAGTAACA 60.339 52.381 0.00 0.00 0.00 2.41
3325 3590 2.632377 CTCATGCGGGTCAAGTAACAT 58.368 47.619 0.00 0.00 0.00 2.71
3326 3591 3.431626 CCTCATGCGGGTCAAGTAACATA 60.432 47.826 0.00 0.00 0.00 2.29
3327 3592 4.188462 CTCATGCGGGTCAAGTAACATAA 58.812 43.478 0.00 0.00 0.00 1.90
3328 3593 4.776349 TCATGCGGGTCAAGTAACATAAT 58.224 39.130 0.00 0.00 0.00 1.28
3329 3594 4.814234 TCATGCGGGTCAAGTAACATAATC 59.186 41.667 0.00 0.00 0.00 1.75
3330 3595 4.209307 TGCGGGTCAAGTAACATAATCA 57.791 40.909 0.00 0.00 0.00 2.57
3331 3596 4.580868 TGCGGGTCAAGTAACATAATCAA 58.419 39.130 0.00 0.00 0.00 2.57
3332 3597 5.004448 TGCGGGTCAAGTAACATAATCAAA 58.996 37.500 0.00 0.00 0.00 2.69
3333 3598 5.473846 TGCGGGTCAAGTAACATAATCAAAA 59.526 36.000 0.00 0.00 0.00 2.44
3334 3599 6.016192 TGCGGGTCAAGTAACATAATCAAAAA 60.016 34.615 0.00 0.00 0.00 1.94
3335 3600 7.033185 GCGGGTCAAGTAACATAATCAAAAAT 58.967 34.615 0.00 0.00 0.00 1.82
3336 3601 7.220108 GCGGGTCAAGTAACATAATCAAAAATC 59.780 37.037 0.00 0.00 0.00 2.17
3337 3602 8.240682 CGGGTCAAGTAACATAATCAAAAATCA 58.759 33.333 0.00 0.00 0.00 2.57
3338 3603 9.573133 GGGTCAAGTAACATAATCAAAAATCAG 57.427 33.333 0.00 0.00 0.00 2.90
3339 3604 9.076596 GGTCAAGTAACATAATCAAAAATCAGC 57.923 33.333 0.00 0.00 0.00 4.26
3340 3605 9.076596 GTCAAGTAACATAATCAAAAATCAGCC 57.923 33.333 0.00 0.00 0.00 4.85
3341 3606 8.250332 TCAAGTAACATAATCAAAAATCAGCCC 58.750 33.333 0.00 0.00 0.00 5.19
3342 3607 6.795399 AGTAACATAATCAAAAATCAGCCCG 58.205 36.000 0.00 0.00 0.00 6.13
3343 3608 5.913137 AACATAATCAAAAATCAGCCCGA 57.087 34.783 0.00 0.00 0.00 5.14
3344 3609 5.248870 ACATAATCAAAAATCAGCCCGAC 57.751 39.130 0.00 0.00 0.00 4.79
3345 3610 4.097892 ACATAATCAAAAATCAGCCCGACC 59.902 41.667 0.00 0.00 0.00 4.79
3346 3611 2.214376 ATCAAAAATCAGCCCGACCA 57.786 45.000 0.00 0.00 0.00 4.02
3347 3612 1.533625 TCAAAAATCAGCCCGACCAG 58.466 50.000 0.00 0.00 0.00 4.00
3348 3613 0.109132 CAAAAATCAGCCCGACCAGC 60.109 55.000 0.00 0.00 0.00 4.85
3349 3614 0.539438 AAAAATCAGCCCGACCAGCA 60.539 50.000 0.00 0.00 0.00 4.41
3350 3615 0.962356 AAAATCAGCCCGACCAGCAG 60.962 55.000 0.00 0.00 0.00 4.24
3351 3616 1.841302 AAATCAGCCCGACCAGCAGA 61.841 55.000 0.00 0.00 0.00 4.26
3352 3617 2.527951 AATCAGCCCGACCAGCAGAC 62.528 60.000 0.00 0.00 0.00 3.51
3353 3618 4.007644 CAGCCCGACCAGCAGACA 62.008 66.667 0.00 0.00 0.00 3.41
3354 3619 4.008933 AGCCCGACCAGCAGACAC 62.009 66.667 0.00 0.00 0.00 3.67
3356 3621 4.742201 CCCGACCAGCAGACACGG 62.742 72.222 0.00 0.00 42.67 4.94
3357 3622 4.742201 CCGACCAGCAGACACGGG 62.742 72.222 0.00 0.00 39.92 5.28
3358 3623 3.680786 CGACCAGCAGACACGGGA 61.681 66.667 0.00 0.00 0.00 5.14
3359 3624 2.262915 GACCAGCAGACACGGGAG 59.737 66.667 0.00 0.00 0.00 4.30
3360 3625 2.203640 ACCAGCAGACACGGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
3361 3626 2.262915 CCAGCAGACACGGGAGAC 59.737 66.667 0.00 0.00 0.00 3.36
3362 3627 2.279069 CCAGCAGACACGGGAGACT 61.279 63.158 0.00 0.00 0.00 3.24
3363 3628 0.965866 CCAGCAGACACGGGAGACTA 60.966 60.000 0.00 0.00 0.00 2.59
3364 3629 0.888619 CAGCAGACACGGGAGACTAA 59.111 55.000 0.00 0.00 0.00 2.24
3365 3630 1.478510 CAGCAGACACGGGAGACTAAT 59.521 52.381 0.00 0.00 0.00 1.73
3366 3631 2.688446 CAGCAGACACGGGAGACTAATA 59.312 50.000 0.00 0.00 0.00 0.98
3367 3632 3.319405 CAGCAGACACGGGAGACTAATAT 59.681 47.826 0.00 0.00 0.00 1.28
3368 3633 3.961408 AGCAGACACGGGAGACTAATATT 59.039 43.478 0.00 0.00 0.00 1.28
3369 3634 4.406003 AGCAGACACGGGAGACTAATATTT 59.594 41.667 0.00 0.00 0.00 1.40
3370 3635 4.745620 GCAGACACGGGAGACTAATATTTC 59.254 45.833 0.00 0.00 0.00 2.17
3371 3636 5.681437 GCAGACACGGGAGACTAATATTTCA 60.681 44.000 0.00 0.00 0.00 2.69
3372 3637 6.338146 CAGACACGGGAGACTAATATTTCAA 58.662 40.000 0.00 0.00 0.00 2.69
3373 3638 6.477033 CAGACACGGGAGACTAATATTTCAAG 59.523 42.308 0.00 0.00 0.00 3.02
3374 3639 6.380274 AGACACGGGAGACTAATATTTCAAGA 59.620 38.462 0.00 0.00 0.00 3.02
3375 3640 6.574350 ACACGGGAGACTAATATTTCAAGAG 58.426 40.000 0.00 0.00 0.00 2.85
3376 3641 6.380274 ACACGGGAGACTAATATTTCAAGAGA 59.620 38.462 0.00 0.00 0.00 3.10
3377 3642 7.093465 ACACGGGAGACTAATATTTCAAGAGAA 60.093 37.037 0.00 0.00 0.00 2.87
3378 3643 7.928706 CACGGGAGACTAATATTTCAAGAGAAT 59.071 37.037 0.00 0.00 32.89 2.40
3379 3644 8.487028 ACGGGAGACTAATATTTCAAGAGAATT 58.513 33.333 0.00 0.00 32.89 2.17
3380 3645 9.982651 CGGGAGACTAATATTTCAAGAGAATTA 57.017 33.333 0.00 0.00 32.89 1.40
3393 3658 9.787532 TTTCAAGAGAATTAAATTAGATTGCCG 57.212 29.630 0.00 0.00 32.89 5.69
3394 3659 8.731275 TCAAGAGAATTAAATTAGATTGCCGA 57.269 30.769 0.00 0.00 0.00 5.54
3395 3660 9.342308 TCAAGAGAATTAAATTAGATTGCCGAT 57.658 29.630 0.00 0.00 0.00 4.18
3396 3661 9.956720 CAAGAGAATTAAATTAGATTGCCGATT 57.043 29.630 0.00 0.00 0.00 3.34
3397 3662 9.956720 AAGAGAATTAAATTAGATTGCCGATTG 57.043 29.630 0.00 0.00 0.00 2.67
3398 3663 8.078596 AGAGAATTAAATTAGATTGCCGATTGC 58.921 33.333 0.00 0.00 41.77 3.56
3428 3693 2.094417 GGATGCACTTGTAGAAGCGTTC 59.906 50.000 0.00 0.00 31.68 3.95
3430 3695 1.864711 TGCACTTGTAGAAGCGTTCAC 59.135 47.619 0.00 0.00 31.68 3.18
3431 3696 1.194772 GCACTTGTAGAAGCGTTCACC 59.805 52.381 0.00 0.00 31.68 4.02
3435 3700 0.679505 TGTAGAAGCGTTCACCAGCT 59.320 50.000 0.00 0.00 46.97 4.24
3447 3712 3.124921 CCAGCTTGGTTACCGGCG 61.125 66.667 0.00 0.00 31.35 6.46
3456 3828 3.454573 TTACCGGCGGTCGCAGAT 61.455 61.111 37.83 12.10 44.11 2.90
3486 3858 1.706995 ATGGAGATGGCTGAGCAGGG 61.707 60.000 6.82 0.00 0.00 4.45
3521 3893 2.174210 AGTGAATGAGATGGATGGGGTG 59.826 50.000 0.00 0.00 0.00 4.61
3526 3898 1.999634 GAGATGGATGGGGTGGTGGG 62.000 65.000 0.00 0.00 0.00 4.61
3527 3899 3.738745 GATGGATGGGGTGGTGGGC 62.739 68.421 0.00 0.00 0.00 5.36
3529 3901 3.754472 GGATGGGGTGGTGGGCAT 61.754 66.667 0.00 0.00 0.00 4.40
3530 3902 2.364160 GATGGGGTGGTGGGCATT 59.636 61.111 0.00 0.00 0.00 3.56
3531 3903 1.306056 GATGGGGTGGTGGGCATTT 60.306 57.895 0.00 0.00 0.00 2.32
3532 3904 0.032615 GATGGGGTGGTGGGCATTTA 60.033 55.000 0.00 0.00 0.00 1.40
3533 3905 0.415429 ATGGGGTGGTGGGCATTTAA 59.585 50.000 0.00 0.00 0.00 1.52
3534 3906 0.415429 TGGGGTGGTGGGCATTTAAT 59.585 50.000 0.00 0.00 0.00 1.40
3535 3907 0.829990 GGGGTGGTGGGCATTTAATG 59.170 55.000 0.00 0.00 0.00 1.90
3536 3908 0.829990 GGGTGGTGGGCATTTAATGG 59.170 55.000 7.08 0.00 0.00 3.16
3544 3916 2.138596 GGCATTTAATGGCGGATGTG 57.861 50.000 15.42 0.00 46.11 3.21
3545 3917 1.408702 GGCATTTAATGGCGGATGTGT 59.591 47.619 15.42 0.00 46.11 3.72
3546 3918 2.543653 GGCATTTAATGGCGGATGTGTC 60.544 50.000 15.42 0.00 46.11 3.67
3547 3919 2.854424 GCATTTAATGGCGGATGTGTCG 60.854 50.000 7.08 0.00 0.00 4.35
3548 3920 2.388310 TTTAATGGCGGATGTGTCGA 57.612 45.000 0.00 0.00 0.00 4.20
3549 3921 1.647346 TTAATGGCGGATGTGTCGAC 58.353 50.000 9.11 9.11 35.97 4.20
3550 3922 0.526739 TAATGGCGGATGTGTCGACG 60.527 55.000 11.62 0.00 38.72 5.12
3554 3926 4.771356 CGGATGTGTCGACGCCGT 62.771 66.667 25.28 14.56 37.68 5.68
3555 3927 2.879462 GGATGTGTCGACGCCGTC 60.879 66.667 25.28 21.20 37.05 4.79
3556 3928 2.178521 GATGTGTCGACGCCGTCT 59.821 61.111 25.28 8.32 37.05 4.18
3557 3929 2.126463 ATGTGTCGACGCCGTCTG 60.126 61.111 25.28 9.06 37.05 3.51
3558 3930 2.523184 GATGTGTCGACGCCGTCTGA 62.523 60.000 25.28 11.29 37.05 3.27
3559 3931 2.502080 GTGTCGACGCCGTCTGAG 60.502 66.667 18.36 0.00 37.05 3.35
3560 3932 4.400109 TGTCGACGCCGTCTGAGC 62.400 66.667 16.07 9.32 37.05 4.26
3567 3939 3.188965 GCCGTCTGAGCGTAGTCT 58.811 61.111 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 1.237285 AAGACACAGTCGCATTGGGC 61.237 55.000 0.00 0.00 37.67 5.36
97 98 1.238439 AAAGACACAGTCGCATTGGG 58.762 50.000 0.00 0.00 37.67 4.12
98 99 2.605338 CCAAAAGACACAGTCGCATTGG 60.605 50.000 13.23 13.23 37.71 3.16
99 100 2.653890 CCAAAAGACACAGTCGCATTG 58.346 47.619 0.00 0.00 37.67 2.82
100 101 1.001378 GCCAAAAGACACAGTCGCATT 60.001 47.619 0.00 0.00 37.67 3.56
101 102 0.593128 GCCAAAAGACACAGTCGCAT 59.407 50.000 0.00 0.00 37.67 4.73
102 103 0.746204 TGCCAAAAGACACAGTCGCA 60.746 50.000 0.00 0.00 37.67 5.10
103 104 0.593128 ATGCCAAAAGACACAGTCGC 59.407 50.000 0.00 0.00 37.67 5.19
104 105 2.416547 CCTATGCCAAAAGACACAGTCG 59.583 50.000 0.00 0.00 37.67 4.18
105 106 2.749621 CCCTATGCCAAAAGACACAGTC 59.250 50.000 0.00 0.00 0.00 3.51
106 107 2.555227 CCCCTATGCCAAAAGACACAGT 60.555 50.000 0.00 0.00 0.00 3.55
107 108 2.094675 CCCCTATGCCAAAAGACACAG 58.905 52.381 0.00 0.00 0.00 3.66
108 109 1.707989 TCCCCTATGCCAAAAGACACA 59.292 47.619 0.00 0.00 0.00 3.72
109 110 2.507407 TCCCCTATGCCAAAAGACAC 57.493 50.000 0.00 0.00 0.00 3.67
110 111 3.756082 ATTCCCCTATGCCAAAAGACA 57.244 42.857 0.00 0.00 0.00 3.41
111 112 3.132824 CCAATTCCCCTATGCCAAAAGAC 59.867 47.826 0.00 0.00 0.00 3.01
112 113 3.373830 CCAATTCCCCTATGCCAAAAGA 58.626 45.455 0.00 0.00 0.00 2.52
113 114 2.435437 CCCAATTCCCCTATGCCAAAAG 59.565 50.000 0.00 0.00 0.00 2.27
114 115 2.476199 CCCAATTCCCCTATGCCAAAA 58.524 47.619 0.00 0.00 0.00 2.44
115 116 1.969240 GCCCAATTCCCCTATGCCAAA 60.969 52.381 0.00 0.00 0.00 3.28
116 117 0.398381 GCCCAATTCCCCTATGCCAA 60.398 55.000 0.00 0.00 0.00 4.52
117 118 1.232792 GCCCAATTCCCCTATGCCA 59.767 57.895 0.00 0.00 0.00 4.92
118 119 1.533994 GGCCCAATTCCCCTATGCC 60.534 63.158 0.00 0.00 0.00 4.40
119 120 1.903404 CGGCCCAATTCCCCTATGC 60.903 63.158 0.00 0.00 0.00 3.14
120 121 0.106217 AACGGCCCAATTCCCCTATG 60.106 55.000 0.00 0.00 0.00 2.23
121 122 0.106217 CAACGGCCCAATTCCCCTAT 60.106 55.000 0.00 0.00 0.00 2.57
122 123 1.304952 CAACGGCCCAATTCCCCTA 59.695 57.895 0.00 0.00 0.00 3.53
123 124 2.037208 CAACGGCCCAATTCCCCT 59.963 61.111 0.00 0.00 0.00 4.79
124 125 3.770040 GCAACGGCCCAATTCCCC 61.770 66.667 0.00 0.00 0.00 4.81
125 126 4.128388 CGCAACGGCCCAATTCCC 62.128 66.667 0.00 0.00 36.38 3.97
126 127 1.988834 CTACGCAACGGCCCAATTCC 61.989 60.000 0.00 0.00 36.38 3.01
127 128 1.427819 CTACGCAACGGCCCAATTC 59.572 57.895 0.00 0.00 36.38 2.17
128 129 2.043980 CCTACGCAACGGCCCAATT 61.044 57.895 0.00 0.00 36.38 2.32
129 130 2.437716 CCTACGCAACGGCCCAAT 60.438 61.111 0.00 0.00 36.38 3.16
130 131 3.479127 AACCTACGCAACGGCCCAA 62.479 57.895 0.00 0.00 36.38 4.12
131 132 3.887335 GAACCTACGCAACGGCCCA 62.887 63.158 0.00 0.00 36.38 5.36
132 133 3.122971 GAACCTACGCAACGGCCC 61.123 66.667 0.00 0.00 36.38 5.80
133 134 3.122971 GGAACCTACGCAACGGCC 61.123 66.667 0.00 0.00 36.38 6.13
146 147 1.084289 CTCGTTTTGGGATCGGGAAC 58.916 55.000 0.00 0.00 0.00 3.62
147 148 0.035820 CCTCGTTTTGGGATCGGGAA 60.036 55.000 0.00 0.00 0.00 3.97
148 149 0.905809 TCCTCGTTTTGGGATCGGGA 60.906 55.000 0.00 0.00 0.00 5.14
149 150 0.743345 GTCCTCGTTTTGGGATCGGG 60.743 60.000 0.00 0.00 33.89 5.14
150 151 0.743345 GGTCCTCGTTTTGGGATCGG 60.743 60.000 0.00 0.00 33.89 4.18
151 152 0.036765 TGGTCCTCGTTTTGGGATCG 60.037 55.000 0.00 0.00 35.62 3.69
152 153 1.739067 CTGGTCCTCGTTTTGGGATC 58.261 55.000 0.00 0.00 33.89 3.36
153 154 0.322546 GCTGGTCCTCGTTTTGGGAT 60.323 55.000 0.00 0.00 33.89 3.85
154 155 1.072505 GCTGGTCCTCGTTTTGGGA 59.927 57.895 0.00 0.00 0.00 4.37
155 156 1.971695 GGCTGGTCCTCGTTTTGGG 60.972 63.158 0.00 0.00 0.00 4.12
156 157 1.971695 GGGCTGGTCCTCGTTTTGG 60.972 63.158 0.00 0.00 34.39 3.28
157 158 1.228124 TGGGCTGGTCCTCGTTTTG 60.228 57.895 0.00 0.00 34.39 2.44
158 159 1.073199 CTGGGCTGGTCCTCGTTTT 59.927 57.895 0.00 0.00 34.39 2.43
159 160 2.750350 CTGGGCTGGTCCTCGTTT 59.250 61.111 0.00 0.00 34.39 3.60
160 161 4.021925 GCTGGGCTGGTCCTCGTT 62.022 66.667 0.00 0.00 34.39 3.85
163 164 4.154347 CTCGCTGGGCTGGTCCTC 62.154 72.222 0.00 0.00 34.39 3.71
196 197 3.499737 GTCCAACCAGCGATGCGG 61.500 66.667 0.00 0.00 0.00 5.69
197 198 3.499737 GGTCCAACCAGCGATGCG 61.500 66.667 0.00 0.00 38.42 4.73
198 199 2.359850 TGGTCCAACCAGCGATGC 60.360 61.111 0.00 0.00 44.79 3.91
208 209 3.790416 AAAGGCTGCGCTGGTCCAA 62.790 57.895 16.47 0.00 0.00 3.53
209 210 3.790416 AAAAGGCTGCGCTGGTCCA 62.790 57.895 16.47 0.00 0.00 4.02
210 211 2.985847 AAAAGGCTGCGCTGGTCC 60.986 61.111 16.47 9.46 0.00 4.46
211 212 2.075426 AACAAAAGGCTGCGCTGGTC 62.075 55.000 16.47 6.93 0.00 4.02
212 213 1.675720 AAACAAAAGGCTGCGCTGGT 61.676 50.000 16.47 1.14 0.00 4.00
213 214 0.530431 AAAACAAAAGGCTGCGCTGG 60.530 50.000 16.47 6.50 0.00 4.85
214 215 1.258720 GAAAAACAAAAGGCTGCGCTG 59.741 47.619 9.73 10.04 0.00 5.18
215 216 1.136891 AGAAAAACAAAAGGCTGCGCT 59.863 42.857 9.73 0.00 0.00 5.92
216 217 1.570813 AGAAAAACAAAAGGCTGCGC 58.429 45.000 0.00 0.00 0.00 6.09
217 218 2.726241 GCTAGAAAAACAAAAGGCTGCG 59.274 45.455 0.00 0.00 0.00 5.18
218 219 2.726241 CGCTAGAAAAACAAAAGGCTGC 59.274 45.455 0.00 0.00 0.00 5.25
219 220 4.223320 TCGCTAGAAAAACAAAAGGCTG 57.777 40.909 0.00 0.00 0.00 4.85
220 221 4.911514 TTCGCTAGAAAAACAAAAGGCT 57.088 36.364 0.00 0.00 32.65 4.58
221 222 6.379386 AGTATTCGCTAGAAAAACAAAAGGC 58.621 36.000 0.00 0.00 40.15 4.35
222 223 7.021790 GGAGTATTCGCTAGAAAAACAAAAGG 58.978 38.462 0.00 0.00 40.15 3.11
223 224 7.021790 GGGAGTATTCGCTAGAAAAACAAAAG 58.978 38.462 0.00 0.00 40.15 2.27
224 225 6.487331 TGGGAGTATTCGCTAGAAAAACAAAA 59.513 34.615 3.97 0.00 40.15 2.44
225 226 5.998981 TGGGAGTATTCGCTAGAAAAACAAA 59.001 36.000 3.97 0.00 40.15 2.83
226 227 5.553123 TGGGAGTATTCGCTAGAAAAACAA 58.447 37.500 3.97 0.00 40.15 2.83
227 228 5.155278 TGGGAGTATTCGCTAGAAAAACA 57.845 39.130 3.97 0.00 40.15 2.83
228 229 7.571428 GCATATGGGAGTATTCGCTAGAAAAAC 60.571 40.741 4.56 0.00 40.15 2.43
229 230 6.426937 GCATATGGGAGTATTCGCTAGAAAAA 59.573 38.462 4.56 0.00 40.15 1.94
230 231 5.932303 GCATATGGGAGTATTCGCTAGAAAA 59.068 40.000 4.56 0.00 40.15 2.29
231 232 5.479306 GCATATGGGAGTATTCGCTAGAAA 58.521 41.667 4.56 0.00 40.15 2.52
232 233 4.380550 CGCATATGGGAGTATTCGCTAGAA 60.381 45.833 14.32 0.00 41.13 2.10
233 234 3.128764 CGCATATGGGAGTATTCGCTAGA 59.871 47.826 14.32 0.00 37.19 2.43
234 235 3.128764 TCGCATATGGGAGTATTCGCTAG 59.871 47.826 17.80 0.00 37.19 3.42
235 236 3.086282 TCGCATATGGGAGTATTCGCTA 58.914 45.455 17.80 0.00 37.19 4.26
236 237 1.893137 TCGCATATGGGAGTATTCGCT 59.107 47.619 17.80 0.00 37.19 4.93
237 238 2.263077 CTCGCATATGGGAGTATTCGC 58.737 52.381 31.54 3.33 46.26 4.70
245 246 2.217038 GCCCCTCTCGCATATGGGA 61.217 63.158 20.12 20.12 42.11 4.37
246 247 2.348998 GCCCCTCTCGCATATGGG 59.651 66.667 13.38 13.38 39.37 4.00
247 248 2.047844 CGCCCCTCTCGCATATGG 60.048 66.667 4.56 0.00 0.00 2.74
248 249 0.532862 AAACGCCCCTCTCGCATATG 60.533 55.000 0.00 0.00 0.00 1.78
249 250 0.180406 AAAACGCCCCTCTCGCATAT 59.820 50.000 0.00 0.00 0.00 1.78
250 251 0.742990 CAAAACGCCCCTCTCGCATA 60.743 55.000 0.00 0.00 0.00 3.14
251 252 2.040544 CAAAACGCCCCTCTCGCAT 61.041 57.895 0.00 0.00 0.00 4.73
252 253 2.668212 CAAAACGCCCCTCTCGCA 60.668 61.111 0.00 0.00 0.00 5.10
253 254 3.431725 CCAAAACGCCCCTCTCGC 61.432 66.667 0.00 0.00 0.00 5.03
355 356 2.220315 TTCGCTGTTTTATTGACGCG 57.780 45.000 3.53 3.53 39.50 6.01
362 363 1.210967 TCGGGGGATTCGCTGTTTTAT 59.789 47.619 0.00 0.00 34.28 1.40
392 394 0.248054 CACGTCTTGCGCACTGTTTT 60.248 50.000 11.12 0.00 46.11 2.43
493 515 3.820590 CAAACGTGCTGGTCCACA 58.179 55.556 0.00 0.00 35.47 4.17
563 588 1.079819 CGAGAACAGGACGGCACAT 60.080 57.895 0.00 0.00 0.00 3.21
577 602 3.769844 AGAATGAACTAGGAAAGGCGAGA 59.230 43.478 0.00 0.00 0.00 4.04
578 603 4.130286 AGAATGAACTAGGAAAGGCGAG 57.870 45.455 0.00 0.00 0.00 5.03
579 604 4.710375 ACTAGAATGAACTAGGAAAGGCGA 59.290 41.667 0.00 0.00 42.68 5.54
581 666 5.119694 CCACTAGAATGAACTAGGAAAGGC 58.880 45.833 0.00 0.00 42.68 4.35
583 668 5.119694 GCCCACTAGAATGAACTAGGAAAG 58.880 45.833 0.00 0.00 42.68 2.62
592 677 0.174845 CGACGGCCCACTAGAATGAA 59.825 55.000 0.00 0.00 0.00 2.57
750 841 2.951475 GAACCAACCTGACCACCGCA 62.951 60.000 0.00 0.00 0.00 5.69
758 849 0.178926 TCTACCCGGAACCAACCTGA 60.179 55.000 0.73 0.00 0.00 3.86
792 883 6.474427 TGTCGCCGTCTGTAATCTAAAATAAG 59.526 38.462 0.00 0.00 0.00 1.73
809 901 0.814010 AACTCAAAGCTTGTCGCCGT 60.814 50.000 0.00 0.00 40.39 5.68
859 951 1.623081 GCGAAACGACGGCATCAGAA 61.623 55.000 0.00 0.00 0.00 3.02
860 953 2.092291 GCGAAACGACGGCATCAGA 61.092 57.895 0.00 0.00 0.00 3.27
873 966 2.431942 GCGAGAGGAACGGCGAAA 60.432 61.111 16.62 0.00 0.00 3.46
980 1073 1.207488 TCACCTCCCCAACATCCTGG 61.207 60.000 0.00 0.00 36.10 4.45
1044 1137 1.068741 GTCACCTTCTTGTCGGTCTGT 59.931 52.381 0.00 0.00 0.00 3.41
1109 1235 2.441750 ACAACAGGGCTCTGACCTTTTA 59.558 45.455 23.49 0.00 38.30 1.52
1199 1332 6.295719 TCTATTTTGGAACAGAGGGAGTAC 57.704 41.667 0.00 0.00 42.39 2.73
1200 1333 6.672218 TCATCTATTTTGGAACAGAGGGAGTA 59.328 38.462 0.00 0.00 42.39 2.59
1201 1334 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
1202 1335 5.994250 TCATCTATTTTGGAACAGAGGGAG 58.006 41.667 0.00 0.00 42.39 4.30
1203 1336 6.409695 GGATCATCTATTTTGGAACAGAGGGA 60.410 42.308 0.00 0.00 42.39 4.20
1204 1337 5.767168 GGATCATCTATTTTGGAACAGAGGG 59.233 44.000 0.00 0.00 42.39 4.30
1205 1338 6.359804 TGGATCATCTATTTTGGAACAGAGG 58.640 40.000 0.00 0.00 42.39 3.69
1206 1339 7.555554 AGTTGGATCATCTATTTTGGAACAGAG 59.444 37.037 0.00 0.00 42.39 3.35
1207 1340 7.405292 AGTTGGATCATCTATTTTGGAACAGA 58.595 34.615 0.00 0.00 42.39 3.41
1208 1341 7.636150 AGTTGGATCATCTATTTTGGAACAG 57.364 36.000 0.00 0.00 42.39 3.16
1209 1342 8.306038 CAAAGTTGGATCATCTATTTTGGAACA 58.694 33.333 0.00 0.00 0.00 3.18
1210 1343 8.306761 ACAAAGTTGGATCATCTATTTTGGAAC 58.693 33.333 11.01 0.00 0.00 3.62
1211 1344 8.421249 ACAAAGTTGGATCATCTATTTTGGAA 57.579 30.769 11.01 0.00 0.00 3.53
1212 1345 8.956426 GTACAAAGTTGGATCATCTATTTTGGA 58.044 33.333 11.01 2.87 0.00 3.53
1213 1346 8.960591 AGTACAAAGTTGGATCATCTATTTTGG 58.039 33.333 11.01 0.00 0.00 3.28
1236 1369 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
1237 1370 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
1238 1371 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
1239 1372 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
1241 1374 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
1242 1375 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
1243 1376 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
1244 1377 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1245 1378 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1246 1379 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1247 1380 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1248 1381 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1249 1382 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1250 1383 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1251 1384 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1252 1385 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1253 1386 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1254 1387 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1255 1388 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1256 1389 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1257 1390 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1258 1391 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1259 1392 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1260 1393 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1261 1394 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1262 1395 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1263 1396 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1264 1397 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1265 1398 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
1266 1399 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
1267 1400 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
1268 1401 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
1269 1402 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
1270 1403 1.719529 TTTGTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
1271 1404 2.235402 TCATTTGTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
1272 1405 3.194968 TCTCATTTGTACTCCCTCCGTTC 59.805 47.826 0.00 0.00 0.00 3.95
1273 1406 3.056035 GTCTCATTTGTACTCCCTCCGTT 60.056 47.826 0.00 0.00 0.00 4.44
1274 1407 2.496470 GTCTCATTTGTACTCCCTCCGT 59.504 50.000 0.00 0.00 0.00 4.69
1275 1408 2.496070 TGTCTCATTTGTACTCCCTCCG 59.504 50.000 0.00 0.00 0.00 4.63
1276 1409 3.676324 CGTGTCTCATTTGTACTCCCTCC 60.676 52.174 0.00 0.00 0.00 4.30
1277 1410 3.192844 TCGTGTCTCATTTGTACTCCCTC 59.807 47.826 0.00 0.00 0.00 4.30
1278 1411 3.162666 TCGTGTCTCATTTGTACTCCCT 58.837 45.455 0.00 0.00 0.00 4.20
1279 1412 3.587797 TCGTGTCTCATTTGTACTCCC 57.412 47.619 0.00 0.00 0.00 4.30
1280 1413 4.567159 GGATTCGTGTCTCATTTGTACTCC 59.433 45.833 0.00 0.00 0.00 3.85
1281 1414 4.265556 CGGATTCGTGTCTCATTTGTACTC 59.734 45.833 0.00 0.00 0.00 2.59
1282 1415 4.082408 TCGGATTCGTGTCTCATTTGTACT 60.082 41.667 0.00 0.00 37.69 2.73
1329 1467 4.798924 GCATTTTGCAATACCACAACAGGA 60.799 41.667 0.00 0.00 44.26 3.86
1480 1675 0.114954 TTTGCCCTGCCCAGAAATCT 59.885 50.000 0.00 0.00 0.00 2.40
1487 1682 1.533753 CCTTCTTTTGCCCTGCCCA 60.534 57.895 0.00 0.00 0.00 5.36
1731 1964 2.092807 TCAGGCTGCTCTGCATATTTGA 60.093 45.455 10.34 0.00 38.13 2.69
1762 1995 3.010250 TGAGTCCTAGCTCAGGTCTAACA 59.990 47.826 0.00 0.00 42.18 2.41
1838 2071 8.830915 TTTCCATATCTTATGCCAAAACCTAA 57.169 30.769 0.00 0.00 0.00 2.69
1892 2125 3.514645 CACAAACTATTTCCTGCATGCC 58.485 45.455 16.68 0.00 0.00 4.40
2080 2342 2.171448 GGGAACTCACATATGCAGGACT 59.829 50.000 1.58 0.00 0.00 3.85
2089 2351 2.820178 TCAGAGCTGGGAACTCACATA 58.180 47.619 0.00 0.00 36.58 2.29
2098 2360 0.619832 AAGCCTGATCAGAGCTGGGA 60.620 55.000 28.34 0.00 35.90 4.37
2130 2392 4.968259 TCTGTTATGTACCAGCTGTTGTT 58.032 39.130 13.81 0.00 0.00 2.83
2240 2502 6.127647 CCCTCAGTTGCTTTATCAAATGCTTA 60.128 38.462 0.00 0.00 40.57 3.09
2244 2506 5.902613 TCCCTCAGTTGCTTTATCAAATG 57.097 39.130 0.00 0.00 41.68 2.32
2301 2563 1.266989 CGAACCAAAGAAGCTCCCAAC 59.733 52.381 0.00 0.00 0.00 3.77
2325 2587 2.704065 TCTTCGTGAAAGGGACCTTCTT 59.296 45.455 3.71 0.00 34.84 2.52
2359 2621 4.035208 CACGGCTAATCTTCCCACAAATAC 59.965 45.833 0.00 0.00 0.00 1.89
2415 2677 2.167861 GGATGTCAGCGAACGCCTC 61.168 63.158 15.44 7.15 43.17 4.70
2423 2685 0.179048 TATTGGCCTGGATGTCAGCG 60.179 55.000 3.32 0.00 42.05 5.18
2442 2704 4.686191 TCAAAATCAGTTTGGCAATGGT 57.314 36.364 0.00 0.00 45.73 3.55
2575 2837 4.348168 AGAAAAAGCTAGGGAGAACTCACA 59.652 41.667 6.84 0.00 34.87 3.58
2580 2842 5.309638 AGTTCAGAAAAAGCTAGGGAGAAC 58.690 41.667 8.81 8.81 34.61 3.01
2610 2873 3.744426 CGCTGAATCATATGCACAGATCA 59.256 43.478 19.79 8.69 0.00 2.92
2665 2928 1.601759 GAGGTGAAGGCTGCAGCAA 60.602 57.895 37.63 18.59 44.36 3.91
2692 2955 4.740235 GCTAGATGCGGAGTCCAC 57.260 61.111 10.49 0.00 0.00 4.02
2736 2999 2.041966 CCATTAGCGTCGTCGACATAC 58.958 52.381 24.13 11.88 39.71 2.39
2737 3000 1.941975 TCCATTAGCGTCGTCGACATA 59.058 47.619 24.13 13.57 39.71 2.29
2749 3012 1.809651 GCTGCTCACCTCTCCATTAGC 60.810 57.143 0.00 0.00 0.00 3.09
2790 3053 0.179009 TATGCATCTGCTTCCTGCCC 60.179 55.000 0.19 0.00 42.66 5.36
2898 3161 1.259142 CCACCATGCTGCCCAAATCA 61.259 55.000 0.00 0.00 0.00 2.57
2929 3192 8.200024 TCATAATCACCAAATTTTTCTTCCCA 57.800 30.769 0.00 0.00 0.00 4.37
2938 3201 6.684613 GCAGCTGGATCATAATCACCAAATTT 60.685 38.462 17.12 0.00 33.21 1.82
2939 3202 5.221382 GCAGCTGGATCATAATCACCAAATT 60.221 40.000 17.12 0.00 33.21 1.82
3011 3274 2.616510 CCACCAAAGAGGACACCAGATC 60.617 54.545 0.00 0.00 41.22 2.75
3022 3285 0.817634 TCCACGTTGCCACCAAAGAG 60.818 55.000 0.00 0.00 34.97 2.85
3024 3287 0.030638 CTTCCACGTTGCCACCAAAG 59.969 55.000 0.00 0.00 36.65 2.77
3026 3289 1.098712 GTCTTCCACGTTGCCACCAA 61.099 55.000 0.00 0.00 0.00 3.67
3084 3349 2.751806 ACCTAGTCTATTATACGGCGGC 59.248 50.000 13.24 0.00 0.00 6.53
3089 3354 4.917887 ACGCGACCTAGTCTATTATACG 57.082 45.455 15.93 0.00 0.00 3.06
3104 3369 3.240861 CAGTTCTCATTTAGCTACGCGAC 59.759 47.826 15.93 0.83 0.00 5.19
3108 3373 6.253727 CACTTACCAGTTCTCATTTAGCTACG 59.746 42.308 0.00 0.00 0.00 3.51
3130 3395 5.555017 ACATCTTCTAGCACACAAATCACT 58.445 37.500 0.00 0.00 0.00 3.41
3277 3542 3.152341 CAACTGAAGGAAGCCAGACAAT 58.848 45.455 0.00 0.00 34.65 2.71
3280 3545 2.224402 ACTCAACTGAAGGAAGCCAGAC 60.224 50.000 0.00 0.00 34.65 3.51
3298 3563 0.535335 TGACCCGCATGAGGTTACTC 59.465 55.000 14.88 4.08 44.23 2.59
3299 3564 0.981183 TTGACCCGCATGAGGTTACT 59.019 50.000 14.88 0.00 37.88 2.24
3300 3565 1.338769 ACTTGACCCGCATGAGGTTAC 60.339 52.381 14.88 5.88 37.88 2.50
3302 3567 0.981183 TACTTGACCCGCATGAGGTT 59.019 50.000 14.88 0.00 37.88 3.50
3304 3569 1.338674 TGTTACTTGACCCGCATGAGG 60.339 52.381 8.78 8.78 0.00 3.86
3305 3570 2.093306 TGTTACTTGACCCGCATGAG 57.907 50.000 0.00 0.00 0.00 2.90
3306 3571 2.779755 ATGTTACTTGACCCGCATGA 57.220 45.000 0.00 0.00 0.00 3.07
3307 3572 4.574421 TGATTATGTTACTTGACCCGCATG 59.426 41.667 0.00 0.00 0.00 4.06
3308 3573 4.776349 TGATTATGTTACTTGACCCGCAT 58.224 39.130 0.00 0.00 0.00 4.73
3309 3574 4.209307 TGATTATGTTACTTGACCCGCA 57.791 40.909 0.00 0.00 0.00 5.69
3310 3575 5.554822 TTTGATTATGTTACTTGACCCGC 57.445 39.130 0.00 0.00 0.00 6.13
3311 3576 8.240682 TGATTTTTGATTATGTTACTTGACCCG 58.759 33.333 0.00 0.00 0.00 5.28
3312 3577 9.573133 CTGATTTTTGATTATGTTACTTGACCC 57.427 33.333 0.00 0.00 0.00 4.46
3313 3578 9.076596 GCTGATTTTTGATTATGTTACTTGACC 57.923 33.333 0.00 0.00 0.00 4.02
3314 3579 9.076596 GGCTGATTTTTGATTATGTTACTTGAC 57.923 33.333 0.00 0.00 0.00 3.18
3315 3580 8.250332 GGGCTGATTTTTGATTATGTTACTTGA 58.750 33.333 0.00 0.00 0.00 3.02
3316 3581 7.220683 CGGGCTGATTTTTGATTATGTTACTTG 59.779 37.037 0.00 0.00 0.00 3.16
3317 3582 7.122055 TCGGGCTGATTTTTGATTATGTTACTT 59.878 33.333 0.00 0.00 0.00 2.24
3318 3583 6.601613 TCGGGCTGATTTTTGATTATGTTACT 59.398 34.615 0.00 0.00 0.00 2.24
3319 3584 6.691388 GTCGGGCTGATTTTTGATTATGTTAC 59.309 38.462 0.00 0.00 0.00 2.50
3320 3585 6.183360 GGTCGGGCTGATTTTTGATTATGTTA 60.183 38.462 0.00 0.00 0.00 2.41
3321 3586 5.394115 GGTCGGGCTGATTTTTGATTATGTT 60.394 40.000 0.00 0.00 0.00 2.71
3322 3587 4.097892 GGTCGGGCTGATTTTTGATTATGT 59.902 41.667 0.00 0.00 0.00 2.29
3323 3588 4.097741 TGGTCGGGCTGATTTTTGATTATG 59.902 41.667 0.00 0.00 0.00 1.90
3324 3589 4.277476 TGGTCGGGCTGATTTTTGATTAT 58.723 39.130 0.00 0.00 0.00 1.28
3325 3590 3.691575 TGGTCGGGCTGATTTTTGATTA 58.308 40.909 0.00 0.00 0.00 1.75
3326 3591 2.493278 CTGGTCGGGCTGATTTTTGATT 59.507 45.455 0.00 0.00 0.00 2.57
3327 3592 2.094675 CTGGTCGGGCTGATTTTTGAT 58.905 47.619 0.00 0.00 0.00 2.57
3328 3593 1.533625 CTGGTCGGGCTGATTTTTGA 58.466 50.000 0.00 0.00 0.00 2.69
3329 3594 0.109132 GCTGGTCGGGCTGATTTTTG 60.109 55.000 0.00 0.00 0.00 2.44
3330 3595 0.539438 TGCTGGTCGGGCTGATTTTT 60.539 50.000 0.00 0.00 0.00 1.94
3331 3596 0.962356 CTGCTGGTCGGGCTGATTTT 60.962 55.000 0.00 0.00 0.00 1.82
3332 3597 1.377725 CTGCTGGTCGGGCTGATTT 60.378 57.895 0.00 0.00 0.00 2.17
3333 3598 2.270205 CTGCTGGTCGGGCTGATT 59.730 61.111 0.00 0.00 0.00 2.57
3334 3599 2.685017 TCTGCTGGTCGGGCTGAT 60.685 61.111 0.00 0.00 33.85 2.90
3335 3600 3.695606 GTCTGCTGGTCGGGCTGA 61.696 66.667 0.00 0.00 35.80 4.26
3336 3601 4.007644 TGTCTGCTGGTCGGGCTG 62.008 66.667 0.00 0.00 0.00 4.85
3337 3602 4.008933 GTGTCTGCTGGTCGGGCT 62.009 66.667 0.00 0.00 0.00 5.19
3339 3604 4.742201 CCGTGTCTGCTGGTCGGG 62.742 72.222 11.62 0.00 37.92 5.14
3340 3605 4.742201 CCCGTGTCTGCTGGTCGG 62.742 72.222 12.19 12.19 40.72 4.79
3341 3606 3.633094 CTCCCGTGTCTGCTGGTCG 62.633 68.421 0.00 0.00 0.00 4.79
3342 3607 2.262915 CTCCCGTGTCTGCTGGTC 59.737 66.667 0.00 0.00 0.00 4.02
3343 3608 2.203640 TCTCCCGTGTCTGCTGGT 60.204 61.111 0.00 0.00 0.00 4.00
3344 3609 0.965866 TAGTCTCCCGTGTCTGCTGG 60.966 60.000 0.00 0.00 0.00 4.85
3345 3610 0.888619 TTAGTCTCCCGTGTCTGCTG 59.111 55.000 0.00 0.00 0.00 4.41
3346 3611 1.853963 ATTAGTCTCCCGTGTCTGCT 58.146 50.000 0.00 0.00 0.00 4.24
3347 3612 4.323553 AATATTAGTCTCCCGTGTCTGC 57.676 45.455 0.00 0.00 0.00 4.26
3348 3613 5.902681 TGAAATATTAGTCTCCCGTGTCTG 58.097 41.667 0.00 0.00 0.00 3.51
3349 3614 6.380274 TCTTGAAATATTAGTCTCCCGTGTCT 59.620 38.462 0.00 0.00 0.00 3.41
3350 3615 6.570692 TCTTGAAATATTAGTCTCCCGTGTC 58.429 40.000 0.00 0.00 0.00 3.67
3351 3616 6.380274 TCTCTTGAAATATTAGTCTCCCGTGT 59.620 38.462 0.00 0.00 0.00 4.49
3352 3617 6.806751 TCTCTTGAAATATTAGTCTCCCGTG 58.193 40.000 0.00 0.00 0.00 4.94
3353 3618 7.419711 TTCTCTTGAAATATTAGTCTCCCGT 57.580 36.000 0.00 0.00 0.00 5.28
3354 3619 8.894768 AATTCTCTTGAAATATTAGTCTCCCG 57.105 34.615 0.00 0.00 35.63 5.14
3367 3632 9.787532 CGGCAATCTAATTTAATTCTCTTGAAA 57.212 29.630 0.00 0.00 35.63 2.69
3368 3633 9.173021 TCGGCAATCTAATTTAATTCTCTTGAA 57.827 29.630 0.00 0.00 36.54 2.69
3369 3634 8.731275 TCGGCAATCTAATTTAATTCTCTTGA 57.269 30.769 0.00 0.00 0.00 3.02
3370 3635 9.956720 AATCGGCAATCTAATTTAATTCTCTTG 57.043 29.630 0.00 0.00 0.00 3.02
3371 3636 9.956720 CAATCGGCAATCTAATTTAATTCTCTT 57.043 29.630 0.00 0.00 0.00 2.85
3372 3637 8.078596 GCAATCGGCAATCTAATTTAATTCTCT 58.921 33.333 0.00 0.00 43.97 3.10
3373 3638 8.220618 GCAATCGGCAATCTAATTTAATTCTC 57.779 34.615 0.00 0.00 43.97 2.87
3398 3663 0.578683 CAAGTGCATCCGCTACGATG 59.421 55.000 0.00 0.00 42.20 3.84
3399 3664 0.175760 ACAAGTGCATCCGCTACGAT 59.824 50.000 0.00 0.00 39.64 3.73
3400 3665 0.812549 TACAAGTGCATCCGCTACGA 59.187 50.000 0.00 0.00 39.64 3.43
3401 3666 1.200483 CTACAAGTGCATCCGCTACG 58.800 55.000 0.00 0.00 39.64 3.51
3402 3667 2.579207 TCTACAAGTGCATCCGCTAC 57.421 50.000 0.00 0.00 39.64 3.58
3403 3668 2.738643 GCTTCTACAAGTGCATCCGCTA 60.739 50.000 0.00 0.00 39.64 4.26
3404 3669 2.009042 GCTTCTACAAGTGCATCCGCT 61.009 52.381 0.00 0.00 39.64 5.52
3405 3670 0.375106 GCTTCTACAAGTGCATCCGC 59.625 55.000 0.00 0.00 39.24 5.54
3406 3671 0.647410 CGCTTCTACAAGTGCATCCG 59.353 55.000 0.00 0.00 33.41 4.18
3407 3672 1.726853 ACGCTTCTACAAGTGCATCC 58.273 50.000 0.00 0.00 43.02 3.51
3408 3673 2.736721 TGAACGCTTCTACAAGTGCATC 59.263 45.455 0.00 0.00 43.02 3.91
3409 3674 2.480419 GTGAACGCTTCTACAAGTGCAT 59.520 45.455 0.00 0.00 43.02 3.96
3410 3675 1.864711 GTGAACGCTTCTACAAGTGCA 59.135 47.619 0.00 0.00 43.02 4.57
3430 3695 3.124921 CGCCGGTAACCAAGCTGG 61.125 66.667 1.90 0.00 45.02 4.85
3431 3696 3.124921 CCGCCGGTAACCAAGCTG 61.125 66.667 1.90 0.00 0.00 4.24
3446 3711 0.103026 TTCATCCTCATCTGCGACCG 59.897 55.000 0.00 0.00 0.00 4.79
3447 3712 1.410517 TCTTCATCCTCATCTGCGACC 59.589 52.381 0.00 0.00 0.00 4.79
3454 3826 4.834534 CCATCTCCATCTTCATCCTCATC 58.165 47.826 0.00 0.00 0.00 2.92
3456 3828 2.371179 GCCATCTCCATCTTCATCCTCA 59.629 50.000 0.00 0.00 0.00 3.86
3486 3858 1.038130 TTCACTCTCCCGAGCTAGCC 61.038 60.000 12.13 1.79 41.09 3.93
3504 3876 1.216175 CACCACCCCATCCATCTCATT 59.784 52.381 0.00 0.00 0.00 2.57
3521 3893 1.040339 TCCGCCATTAAATGCCCACC 61.040 55.000 0.00 0.00 0.00 4.61
3526 3898 2.731217 GACACATCCGCCATTAAATGC 58.269 47.619 0.00 0.00 0.00 3.56
3527 3899 2.611751 TCGACACATCCGCCATTAAATG 59.388 45.455 0.00 0.00 0.00 2.32
3528 3900 2.612212 GTCGACACATCCGCCATTAAAT 59.388 45.455 11.55 0.00 0.00 1.40
3529 3901 2.004017 GTCGACACATCCGCCATTAAA 58.996 47.619 11.55 0.00 0.00 1.52
3530 3902 1.647346 GTCGACACATCCGCCATTAA 58.353 50.000 11.55 0.00 0.00 1.40
3531 3903 0.526739 CGTCGACACATCCGCCATTA 60.527 55.000 17.16 0.00 0.00 1.90
3532 3904 1.809619 CGTCGACACATCCGCCATT 60.810 57.895 17.16 0.00 0.00 3.16
3533 3905 2.202743 CGTCGACACATCCGCCAT 60.203 61.111 17.16 0.00 0.00 4.40
3537 3909 4.771356 ACGGCGTCGACACATCCG 62.771 66.667 20.03 24.35 41.59 4.18
3538 3910 2.879462 GACGGCGTCGACACATCC 60.879 66.667 25.42 9.45 40.11 3.51
3539 3911 2.152699 CAGACGGCGTCGACACATC 61.153 63.158 31.59 8.69 37.67 3.06
3540 3912 2.126463 CAGACGGCGTCGACACAT 60.126 61.111 31.59 12.78 37.67 3.21
3541 3913 3.249973 CTCAGACGGCGTCGACACA 62.250 63.158 31.59 15.12 37.67 3.72
3542 3914 2.502080 CTCAGACGGCGTCGACAC 60.502 66.667 31.59 11.02 37.67 3.67
3543 3915 4.400109 GCTCAGACGGCGTCGACA 62.400 66.667 31.59 19.11 37.67 4.35
3550 3922 3.188965 AGACTACGCTCAGACGGC 58.811 61.111 0.00 0.00 37.37 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.