Multiple sequence alignment - TraesCS4A01G344700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G344700 chr4A 100.000 3543 0 0 1 3543 624368585 624372127 0.000000e+00 6543.0
1 TraesCS4A01G344700 chr4A 82.174 1969 270 50 657 2587 624350115 624352040 0.000000e+00 1616.0
2 TraesCS4A01G344700 chr4A 79.029 1297 237 27 1023 2300 624992993 624991713 0.000000e+00 856.0
3 TraesCS4A01G344700 chr4A 77.461 386 58 17 158 518 624345499 624345880 1.670000e-48 204.0
4 TraesCS4A01G344700 chr4A 88.667 150 11 3 759 908 624993200 624993057 1.010000e-40 178.0
5 TraesCS4A01G344700 chr5D 94.111 2836 123 19 491 3306 544481033 544483844 0.000000e+00 4272.0
6 TraesCS4A01G344700 chr5D 82.879 1980 253 50 649 2586 544459472 544461407 0.000000e+00 1700.0
7 TraesCS4A01G344700 chr5D 89.766 342 20 6 1 328 544480705 544481045 1.180000e-114 424.0
8 TraesCS4A01G344700 chr5D 77.670 309 40 16 35 317 544531564 544531869 1.020000e-35 161.0
9 TraesCS4A01G344700 chr5D 90.566 53 5 0 546 598 228070589 228070537 1.760000e-08 71.3
10 TraesCS4A01G344700 chr5B 88.266 1943 151 35 613 2546 686769506 686771380 0.000000e+00 2254.0
11 TraesCS4A01G344700 chr5B 88.787 1855 147 27 613 2457 686761522 686763325 0.000000e+00 2217.0
12 TraesCS4A01G344700 chr5B 80.665 1655 285 23 1035 2672 686849927 686851563 0.000000e+00 1251.0
13 TraesCS4A01G344700 chr5B 79.635 1262 242 12 1073 2328 686201106 686202358 0.000000e+00 893.0
14 TraesCS4A01G344700 chr5B 79.075 411 65 15 158 550 686761038 686761445 2.710000e-66 263.0
15 TraesCS4A01G344700 chr5B 79.075 411 65 15 158 550 686769022 686769429 2.710000e-66 263.0
16 TraesCS4A01G344700 chr5B 76.815 496 90 18 2088 2571 686842355 686842837 4.540000e-64 255.0
17 TraesCS4A01G344700 chr5B 76.815 496 90 18 2088 2571 686909806 686910288 4.540000e-64 255.0
18 TraesCS4A01G344700 chr5B 82.710 214 23 7 345 550 686849433 686849640 1.010000e-40 178.0
19 TraesCS4A01G344700 chr5B 83.594 128 10 5 2710 2826 686747167 686747294 3.740000e-20 110.0
20 TraesCS4A01G344700 chr5B 82.609 138 7 6 37 165 686847625 686847754 4.840000e-19 106.0
21 TraesCS4A01G344700 chr5B 82.609 138 7 6 37 165 686914960 686915089 4.840000e-19 106.0
22 TraesCS4A01G344700 chr5B 90.566 53 5 0 546 598 251577555 251577503 1.760000e-08 71.3
23 TraesCS4A01G344700 chrUn 80.604 1655 286 23 1035 2672 252494924 252493288 0.000000e+00 1245.0
24 TraesCS4A01G344700 chrUn 76.815 496 90 18 2088 2571 355072229 355071747 4.540000e-64 255.0
25 TraesCS4A01G344700 chrUn 82.710 214 23 7 345 550 252495418 252495211 1.010000e-40 178.0
26 TraesCS4A01G344700 chr3A 89.418 189 14 5 3360 3543 19352013 19352200 2.130000e-57 233.0
27 TraesCS4A01G344700 chr3A 91.824 159 9 2 3389 3543 600067987 600067829 5.960000e-53 219.0
28 TraesCS4A01G344700 chr3A 94.000 50 3 0 3348 3397 600082992 600082943 3.790000e-10 76.8
29 TraesCS4A01G344700 chr7A 84.737 190 22 7 3360 3543 28799194 28799006 2.170000e-42 183.0
30 TraesCS4A01G344700 chr7A 94.000 50 3 0 540 589 628839997 628840046 3.790000e-10 76.8
31 TraesCS4A01G344700 chr2B 100.000 45 0 0 545 589 386286326 386286370 2.270000e-12 84.2
32 TraesCS4A01G344700 chr7D 97.778 45 1 0 549 593 122836266 122836310 1.050000e-10 78.7
33 TraesCS4A01G344700 chr7D 92.593 54 3 1 536 589 216080824 216080772 3.790000e-10 76.8
34 TraesCS4A01G344700 chr3B 95.833 48 0 2 545 590 423461591 423461638 3.790000e-10 76.8
35 TraesCS4A01G344700 chr3B 85.714 63 7 2 550 611 70384878 70384939 8.210000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G344700 chr4A 624368585 624372127 3542 False 6543.000000 6543 100.000000 1 3543 1 chr4A.!!$F3 3542
1 TraesCS4A01G344700 chr4A 624350115 624352040 1925 False 1616.000000 1616 82.174000 657 2587 1 chr4A.!!$F2 1930
2 TraesCS4A01G344700 chr4A 624991713 624993200 1487 True 517.000000 856 83.848000 759 2300 2 chr4A.!!$R1 1541
3 TraesCS4A01G344700 chr5D 544480705 544483844 3139 False 2348.000000 4272 91.938500 1 3306 2 chr5D.!!$F3 3305
4 TraesCS4A01G344700 chr5D 544459472 544461407 1935 False 1700.000000 1700 82.879000 649 2586 1 chr5D.!!$F1 1937
5 TraesCS4A01G344700 chr5B 686769022 686771380 2358 False 1258.500000 2254 83.670500 158 2546 2 chr5B.!!$F7 2388
6 TraesCS4A01G344700 chr5B 686761038 686763325 2287 False 1240.000000 2217 83.931000 158 2457 2 chr5B.!!$F6 2299
7 TraesCS4A01G344700 chr5B 686201106 686202358 1252 False 893.000000 893 79.635000 1073 2328 1 chr5B.!!$F1 1255
8 TraesCS4A01G344700 chr5B 686847625 686851563 3938 False 511.666667 1251 81.994667 37 2672 3 chr5B.!!$F8 2635
9 TraesCS4A01G344700 chrUn 252493288 252495418 2130 True 711.500000 1245 81.657000 345 2672 2 chrUn.!!$R2 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 2299 0.252197 AACAATAGGACGGGACCAGC 59.748 55.0 0.0 0.0 0.00 4.85 F
754 2331 0.979665 CAGGAGTTCCCAGCTTGAGA 59.020 55.0 0.0 0.0 37.41 3.27 F
1940 3625 0.027194 CATGTCTCAAATGCCTCGCG 59.973 55.0 0.0 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 3483 0.890683 GATTGTTGGCAAGGGTGAGG 59.109 55.000 0.00 0.0 38.10 3.86 R
2383 4078 2.359900 CTGGACAAGGTAATGAGCACC 58.640 52.381 0.00 0.0 36.22 5.01 R
3427 5176 0.030773 GGCGTGCATGAGATCGAGTA 59.969 55.000 10.93 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.315890 GCTTTAAAGATGGATTAGCTGTTTGT 58.684 34.615 19.48 0.00 0.00 2.83
64 65 0.961019 GAGCAGATTTTGTGTGGCCA 59.039 50.000 0.00 0.00 0.00 5.36
112 113 8.900983 TTCCTTGTTTCTTTCCAATTTTATGG 57.099 30.769 0.00 0.00 42.12 2.74
133 142 7.582667 ATGGTTATGGCTAAATCACTAAACC 57.417 36.000 0.00 0.00 35.51 3.27
164 210 1.349627 GCCACGTTCATGCGATGAG 59.650 57.895 0.00 0.00 40.94 2.90
178 224 3.638627 TGCGATGAGTGAGAAGGTGATAT 59.361 43.478 0.00 0.00 0.00 1.63
203 253 5.304614 GGAACCAGTATGAGCTCTTGGTATA 59.695 44.000 23.44 9.16 39.69 1.47
205 255 7.178628 GGAACCAGTATGAGCTCTTGGTATATA 59.821 40.741 23.44 7.98 39.69 0.86
206 256 8.671987 AACCAGTATGAGCTCTTGGTATATAT 57.328 34.615 23.44 11.66 39.69 0.86
208 258 7.676043 ACCAGTATGAGCTCTTGGTATATATGT 59.324 37.037 22.51 7.01 39.69 2.29
209 259 9.190317 CCAGTATGAGCTCTTGGTATATATGTA 57.810 37.037 16.19 0.00 39.69 2.29
281 341 4.637483 ATTTCAGGTTGCATGGTTATCG 57.363 40.909 0.00 0.00 0.00 2.92
283 343 2.627945 TCAGGTTGCATGGTTATCGTC 58.372 47.619 0.00 0.00 0.00 4.20
294 354 5.753438 GCATGGTTATCGTCTGATGTTTAGA 59.247 40.000 0.00 0.00 35.99 2.10
324 411 1.271856 TGGACGCACAAGGAGGATAA 58.728 50.000 0.00 0.00 0.00 1.75
333 420 4.094442 GCACAAGGAGGATAAAAGTAACCG 59.906 45.833 0.00 0.00 0.00 4.44
395 1906 1.626321 TGATGGTTTTAGCCAGGACGA 59.374 47.619 0.00 0.00 42.47 4.20
399 1910 4.497291 TGGTTTTAGCCAGGACGATATT 57.503 40.909 0.00 0.00 33.97 1.28
421 1935 4.032960 TGGCTACATGATGAACCAAGTT 57.967 40.909 0.00 0.00 0.00 2.66
453 1972 8.801715 TTGTGCTAATTCTCTTCATTTTTGTC 57.198 30.769 0.00 0.00 0.00 3.18
462 1981 8.868522 TTCTCTTCATTTTTGTCTGTCCATAT 57.131 30.769 0.00 0.00 0.00 1.78
486 2005 3.486383 TCCTTCATTTTCAAAGGCGTCT 58.514 40.909 0.00 0.00 41.56 4.18
487 2006 3.253188 TCCTTCATTTTCAAAGGCGTCTG 59.747 43.478 0.00 0.00 41.56 3.51
490 2009 3.745799 TCATTTTCAAAGGCGTCTGGTA 58.254 40.909 0.00 0.00 0.00 3.25
532 2052 6.837471 TGATCATATCATCAGAGTCAGAGG 57.163 41.667 0.00 0.00 33.59 3.69
555 2079 7.344134 AGGTGTTATTTTTCTATGGTACTCCC 58.656 38.462 0.00 0.00 0.00 4.30
577 2101 8.433421 TCCCTCTGTAAAGAAATATAAAAGCG 57.567 34.615 0.00 0.00 0.00 4.68
579 2103 8.674607 CCCTCTGTAAAGAAATATAAAAGCGTT 58.325 33.333 0.00 0.00 0.00 4.84
600 2125 6.276847 CGTTTAGATCACTCTAGAAATGCCT 58.723 40.000 0.00 0.00 35.43 4.75
602 2127 7.268586 GTTTAGATCACTCTAGAAATGCCTGA 58.731 38.462 0.00 0.00 35.43 3.86
692 2267 1.459730 CCCTACTGGACTAGGGCCC 60.460 68.421 16.46 16.46 45.42 5.80
722 2299 0.252197 AACAATAGGACGGGACCAGC 59.748 55.000 0.00 0.00 0.00 4.85
754 2331 0.979665 CAGGAGTTCCCAGCTTGAGA 59.020 55.000 0.00 0.00 37.41 3.27
755 2332 1.066286 CAGGAGTTCCCAGCTTGAGAG 60.066 57.143 0.00 0.00 37.41 3.20
779 2356 2.675844 CCACGAATTTCAGTCGGCATAA 59.324 45.455 0.00 0.00 42.82 1.90
780 2357 3.312421 CCACGAATTTCAGTCGGCATAAT 59.688 43.478 0.00 0.00 42.82 1.28
781 2358 4.509970 CCACGAATTTCAGTCGGCATAATA 59.490 41.667 0.00 0.00 42.82 0.98
782 2359 5.007234 CCACGAATTTCAGTCGGCATAATAA 59.993 40.000 0.00 0.00 42.82 1.40
785 2362 6.136071 CGAATTTCAGTCGGCATAATAAAGG 58.864 40.000 0.00 0.00 34.85 3.11
947 2541 2.561419 GACTTGTGGCCACTGACTAGTA 59.439 50.000 34.75 10.93 34.74 1.82
987 2581 1.000827 TGCAACGCATGGTTAACAAGG 60.001 47.619 8.10 0.00 36.49 3.61
1020 2625 1.686355 CACCACCCAAGCAGTTTGTA 58.314 50.000 0.00 0.00 34.87 2.41
1127 2799 3.343972 GCGTTTCTCTTGCCAGCA 58.656 55.556 0.00 0.00 0.00 4.41
1219 2894 3.744719 CGTCCTTCTCCGTGCCGA 61.745 66.667 0.00 0.00 0.00 5.54
1235 2913 3.695606 GAGTGGTCTGGCGCCTCA 61.696 66.667 29.70 17.25 0.00 3.86
1403 3081 3.248446 TTTCGTTGGCTCCCTCCCG 62.248 63.158 0.00 0.00 0.00 5.14
1451 3129 1.720694 GGAAGCTCTCCCTCGAGTCG 61.721 65.000 12.31 6.09 38.44 4.18
1742 3426 2.284150 TGCTTCAGTTGACTTTTCGACG 59.716 45.455 0.00 0.00 40.72 5.12
1799 3483 1.084370 ATTGTAGCGCGCTCAAGTCC 61.084 55.000 40.23 18.98 0.00 3.85
1817 3501 0.542702 CCCTCACCCTTGCCAACAAT 60.543 55.000 0.00 0.00 34.61 2.71
1889 3573 5.466728 TCGCTGCTTGGATATCTCAAATAAC 59.533 40.000 2.05 0.00 0.00 1.89
1940 3625 0.027194 CATGTCTCAAATGCCTCGCG 59.973 55.000 0.00 0.00 0.00 5.87
1986 3674 2.925563 GCTTTCACTAACATGCCATTGC 59.074 45.455 0.00 0.00 38.26 3.56
2091 3785 2.225382 TGTCCTATCCGGAGACAACA 57.775 50.000 19.54 13.78 44.20 3.33
2092 3786 2.531771 TGTCCTATCCGGAGACAACAA 58.468 47.619 19.54 0.21 44.20 2.83
2093 3787 2.232941 TGTCCTATCCGGAGACAACAAC 59.767 50.000 19.54 8.00 44.20 3.32
2334 4028 6.103997 GTCGTATCTGGGAACAATAAAGTCA 58.896 40.000 0.00 0.00 42.06 3.41
2383 4078 3.462021 GATTGATTCCTCTTCCCTGACG 58.538 50.000 0.00 0.00 0.00 4.35
2385 4082 1.196012 GATTCCTCTTCCCTGACGGT 58.804 55.000 0.00 0.00 0.00 4.83
2391 4088 0.904865 TCTTCCCTGACGGTGCTCAT 60.905 55.000 0.00 0.00 0.00 2.90
2392 4089 0.036010 CTTCCCTGACGGTGCTCATT 60.036 55.000 0.00 0.00 0.00 2.57
2393 4090 1.207089 CTTCCCTGACGGTGCTCATTA 59.793 52.381 0.00 0.00 0.00 1.90
2480 4202 9.593565 CATGGATATAGCATCCTATTCCTACTA 57.406 37.037 4.98 0.00 38.95 1.82
2481 4203 8.998277 TGGATATAGCATCCTATTCCTACTAC 57.002 38.462 4.98 0.00 38.95 2.73
2578 4318 5.221541 GGCTTATAGCTGATGTAGACCAAGT 60.222 44.000 0.00 0.00 41.99 3.16
2591 4331 5.825679 TGTAGACCAAGTGTGTTTGCTTATT 59.174 36.000 0.00 0.00 0.00 1.40
2592 4332 6.993308 TGTAGACCAAGTGTGTTTGCTTATTA 59.007 34.615 0.00 0.00 0.00 0.98
2593 4333 7.663905 TGTAGACCAAGTGTGTTTGCTTATTAT 59.336 33.333 0.00 0.00 0.00 1.28
2672 4412 7.503521 TGTGTTGTGTGATGCTTTCTTATTA 57.496 32.000 0.00 0.00 0.00 0.98
2702 4442 4.129380 TGTCAGCTGGTTATATGCATCAC 58.871 43.478 15.13 0.00 0.00 3.06
2706 4446 5.297527 TCAGCTGGTTATATGCATCACTTTG 59.702 40.000 15.13 0.00 0.00 2.77
2707 4447 5.297527 CAGCTGGTTATATGCATCACTTTGA 59.702 40.000 0.19 0.00 0.00 2.69
2728 4468 4.951715 TGAGATGTTTGGATGAAGGAATGG 59.048 41.667 0.00 0.00 0.00 3.16
2822 4562 3.072915 ACTCCCTCATTGTGTTGACATCA 59.927 43.478 0.00 0.00 30.13 3.07
2832 4572 2.874701 GTGTTGACATCAGCTCAGTTGT 59.125 45.455 0.00 0.00 0.00 3.32
2851 4591 3.225104 TGTACTGTACGGGGATGGATAC 58.775 50.000 12.87 0.00 0.00 2.24
2888 4628 5.454966 TGGATAAGGCAGTGTAGAGATACA 58.545 41.667 0.00 0.00 0.00 2.29
2950 4694 7.443575 AGTTATCTGTGATGTATCCTTCATTGC 59.556 37.037 0.00 0.00 0.00 3.56
2977 4721 6.367421 TGCAATTCACGTTCTGTTATTACAC 58.633 36.000 0.00 0.00 0.00 2.90
3038 4787 3.569701 GTGTCTGTTCAACATGTTGGGAT 59.430 43.478 32.54 0.00 40.78 3.85
3041 4790 5.647658 TGTCTGTTCAACATGTTGGGATATC 59.352 40.000 32.54 20.64 40.78 1.63
3072 4821 4.448732 GTCCCTGCTTATTTTTGTGCAAAG 59.551 41.667 0.00 0.00 34.90 2.77
3092 4841 1.679944 GCATGCTAGCACTTTGGAGGA 60.680 52.381 22.07 0.00 0.00 3.71
3096 4845 1.737363 GCTAGCACTTTGGAGGAGACG 60.737 57.143 10.63 0.00 0.00 4.18
3097 4846 1.819288 CTAGCACTTTGGAGGAGACGA 59.181 52.381 0.00 0.00 0.00 4.20
3139 4888 2.758979 CGGGTCTTCCTAGTTTCTAGCA 59.241 50.000 0.00 0.00 0.00 3.49
3152 4901 6.446781 AGTTTCTAGCATGTTGGATGATTG 57.553 37.500 0.00 0.00 0.00 2.67
3189 4938 4.640771 TTCTTAGTGAAGCTTCCATGGT 57.359 40.909 23.42 6.22 32.21 3.55
3197 4946 4.576463 GTGAAGCTTCCATGGTTCGATAAT 59.424 41.667 23.42 0.00 44.53 1.28
3202 4951 7.639113 AGCTTCCATGGTTCGATAATAAAAA 57.361 32.000 12.58 0.00 0.00 1.94
3203 4952 8.237811 AGCTTCCATGGTTCGATAATAAAAAT 57.762 30.769 12.58 0.00 0.00 1.82
3230 4979 7.330946 GTCGTATAATGGAGCTATTATGCAACA 59.669 37.037 14.10 0.00 36.20 3.33
3232 4981 7.201556 CGTATAATGGAGCTATTATGCAACAGG 60.202 40.741 14.10 0.00 36.20 4.00
3243 4992 8.567948 GCTATTATGCAACAGGTGTATATTTGT 58.432 33.333 0.00 0.00 35.10 2.83
3248 4997 8.752005 ATGCAACAGGTGTATATTTGTCTATT 57.248 30.769 0.00 0.00 29.63 1.73
3261 5010 6.910536 ATTTGTCTATTAGGAAGAGCAACG 57.089 37.500 0.00 0.00 0.00 4.10
3262 5011 5.654603 TTGTCTATTAGGAAGAGCAACGA 57.345 39.130 0.00 0.00 0.00 3.85
3263 5012 5.854010 TGTCTATTAGGAAGAGCAACGAT 57.146 39.130 0.00 0.00 0.00 3.73
3278 5027 6.149308 AGAGCAACGATGTTGTATTTCATTGA 59.851 34.615 10.96 0.00 31.89 2.57
3299 5048 9.512435 CATTGATGATGAAGAAGAAACATTACC 57.488 33.333 0.00 0.00 38.03 2.85
3302 5051 7.337689 TGATGATGAAGAAGAAACATTACCAGG 59.662 37.037 0.00 0.00 0.00 4.45
3305 5054 3.087370 AGAAGAAACATTACCAGGCCC 57.913 47.619 0.00 0.00 0.00 5.80
3306 5055 1.743394 GAAGAAACATTACCAGGCCCG 59.257 52.381 0.00 0.00 0.00 6.13
3307 5056 0.696501 AGAAACATTACCAGGCCCGT 59.303 50.000 0.00 0.00 0.00 5.28
3308 5057 1.910671 AGAAACATTACCAGGCCCGTA 59.089 47.619 0.00 0.00 0.00 4.02
3309 5058 2.093128 AGAAACATTACCAGGCCCGTAG 60.093 50.000 0.00 0.00 0.00 3.51
3310 5059 0.107361 AACATTACCAGGCCCGTAGC 60.107 55.000 0.00 0.00 42.60 3.58
3311 5060 1.268992 ACATTACCAGGCCCGTAGCA 61.269 55.000 0.00 0.00 46.50 3.49
3312 5061 0.532862 CATTACCAGGCCCGTAGCAG 60.533 60.000 0.00 0.00 46.50 4.24
3313 5062 0.689745 ATTACCAGGCCCGTAGCAGA 60.690 55.000 0.00 0.00 46.50 4.26
3314 5063 1.610554 TTACCAGGCCCGTAGCAGAC 61.611 60.000 0.00 0.00 46.50 3.51
3315 5064 2.791613 TACCAGGCCCGTAGCAGACA 62.792 60.000 0.00 0.00 46.50 3.41
3316 5065 2.125512 CAGGCCCGTAGCAGACAC 60.126 66.667 0.00 0.00 46.50 3.67
3317 5066 3.391382 AGGCCCGTAGCAGACACC 61.391 66.667 0.00 0.00 46.50 4.16
3318 5067 3.391382 GGCCCGTAGCAGACACCT 61.391 66.667 0.00 0.00 46.50 4.00
3319 5068 2.125512 GCCCGTAGCAGACACCTG 60.126 66.667 0.00 0.00 42.97 4.00
3320 5069 2.943978 GCCCGTAGCAGACACCTGT 61.944 63.158 0.00 0.00 42.35 4.00
3321 5070 1.079819 CCCGTAGCAGACACCTGTG 60.080 63.158 0.00 0.00 42.35 3.66
3322 5071 1.738099 CCGTAGCAGACACCTGTGC 60.738 63.158 0.00 0.00 42.35 4.57
3323 5072 1.006220 CGTAGCAGACACCTGTGCA 60.006 57.895 0.00 0.00 42.47 4.57
3324 5073 1.010935 CGTAGCAGACACCTGTGCAG 61.011 60.000 0.00 0.00 42.47 4.41
3325 5074 1.004560 TAGCAGACACCTGTGCAGC 60.005 57.895 0.00 0.00 42.47 5.25
3326 5075 1.757423 TAGCAGACACCTGTGCAGCA 61.757 55.000 0.00 0.00 42.47 4.41
3327 5076 1.970114 GCAGACACCTGTGCAGCAT 60.970 57.895 0.00 0.00 42.35 3.79
3328 5077 1.873863 CAGACACCTGTGCAGCATG 59.126 57.895 0.00 0.00 35.76 4.06
3329 5078 0.887836 CAGACACCTGTGCAGCATGT 60.888 55.000 0.00 0.00 35.33 3.21
3330 5079 0.604780 AGACACCTGTGCAGCATGTC 60.605 55.000 16.14 16.14 40.45 3.06
3331 5080 1.580845 GACACCTGTGCAGCATGTCC 61.581 60.000 13.79 0.00 37.20 4.02
3332 5081 2.359107 ACCTGTGCAGCATGTCCG 60.359 61.111 0.00 0.00 39.31 4.79
3333 5082 2.046988 CCTGTGCAGCATGTCCGA 60.047 61.111 0.00 0.00 39.31 4.55
3334 5083 2.393768 CCTGTGCAGCATGTCCGAC 61.394 63.158 0.00 0.00 39.31 4.79
3335 5084 1.375140 CTGTGCAGCATGTCCGACT 60.375 57.895 0.00 0.00 39.31 4.18
3336 5085 1.632948 CTGTGCAGCATGTCCGACTG 61.633 60.000 0.00 0.00 39.31 3.51
3339 5088 3.171987 CAGCATGTCCGACTGCAC 58.828 61.111 18.88 1.19 40.88 4.57
3340 5089 1.668793 CAGCATGTCCGACTGCACA 60.669 57.895 18.88 0.00 40.88 4.57
3341 5090 1.375140 AGCATGTCCGACTGCACAG 60.375 57.895 18.88 0.00 40.88 3.66
3342 5091 2.393768 GCATGTCCGACTGCACAGG 61.394 63.158 14.40 0.00 38.28 4.00
3343 5092 1.742880 CATGTCCGACTGCACAGGG 60.743 63.158 2.21 0.00 0.00 4.45
3344 5093 3.612247 ATGTCCGACTGCACAGGGC 62.612 63.158 2.21 0.00 45.13 5.19
3349 5098 3.009115 GACTGCACAGGGCCCCTA 61.009 66.667 21.43 0.00 43.89 3.53
3350 5099 3.011517 ACTGCACAGGGCCCCTAG 61.012 66.667 21.43 12.04 43.89 3.02
3351 5100 4.496336 CTGCACAGGGCCCCTAGC 62.496 72.222 21.43 20.52 43.89 3.42
3358 5107 3.735725 GGGCCCCTAGCACTACAA 58.264 61.111 12.23 0.00 43.83 2.41
3359 5108 1.223763 GGGCCCCTAGCACTACAAC 59.776 63.158 12.23 0.00 43.83 3.32
3360 5109 1.272554 GGGCCCCTAGCACTACAACT 61.273 60.000 12.23 0.00 43.83 3.16
3361 5110 0.618981 GGCCCCTAGCACTACAACTT 59.381 55.000 0.00 0.00 46.50 2.66
3362 5111 1.835531 GGCCCCTAGCACTACAACTTA 59.164 52.381 0.00 0.00 46.50 2.24
3363 5112 2.237893 GGCCCCTAGCACTACAACTTAA 59.762 50.000 0.00 0.00 46.50 1.85
3364 5113 3.118000 GGCCCCTAGCACTACAACTTAAT 60.118 47.826 0.00 0.00 46.50 1.40
3365 5114 3.877508 GCCCCTAGCACTACAACTTAATG 59.122 47.826 0.00 0.00 42.97 1.90
3366 5115 4.383770 GCCCCTAGCACTACAACTTAATGA 60.384 45.833 0.00 0.00 42.97 2.57
3367 5116 5.687706 GCCCCTAGCACTACAACTTAATGAT 60.688 44.000 0.00 0.00 42.97 2.45
3368 5117 6.357367 CCCCTAGCACTACAACTTAATGATT 58.643 40.000 0.00 0.00 0.00 2.57
3369 5118 7.506114 CCCCTAGCACTACAACTTAATGATTA 58.494 38.462 0.00 0.00 0.00 1.75
3370 5119 7.990886 CCCCTAGCACTACAACTTAATGATTAA 59.009 37.037 0.00 0.00 0.00 1.40
3371 5120 9.561069 CCCTAGCACTACAACTTAATGATTAAT 57.439 33.333 0.00 0.00 0.00 1.40
3376 5125 9.722056 GCACTACAACTTAATGATTAATCAAGG 57.278 33.333 21.50 9.59 40.69 3.61
3377 5126 9.722056 CACTACAACTTAATGATTAATCAAGGC 57.278 33.333 21.50 0.00 40.69 4.35
3378 5127 9.461312 ACTACAACTTAATGATTAATCAAGGCA 57.539 29.630 21.50 6.11 40.69 4.75
3379 5128 9.722056 CTACAACTTAATGATTAATCAAGGCAC 57.278 33.333 21.50 0.00 40.69 5.01
3380 5129 7.250569 ACAACTTAATGATTAATCAAGGCACG 58.749 34.615 21.50 10.40 40.69 5.34
3381 5130 6.377327 ACTTAATGATTAATCAAGGCACGG 57.623 37.500 21.50 10.64 40.69 4.94
3382 5131 5.299279 ACTTAATGATTAATCAAGGCACGGG 59.701 40.000 21.50 9.30 40.69 5.28
3383 5132 2.051334 TGATTAATCAAGGCACGGGG 57.949 50.000 15.82 0.00 33.08 5.73
3384 5133 1.283613 TGATTAATCAAGGCACGGGGT 59.716 47.619 15.82 0.00 33.08 4.95
3385 5134 2.506231 TGATTAATCAAGGCACGGGGTA 59.494 45.455 15.82 0.00 33.08 3.69
3386 5135 2.406596 TTAATCAAGGCACGGGGTAC 57.593 50.000 0.00 0.00 0.00 3.34
3387 5136 1.575419 TAATCAAGGCACGGGGTACT 58.425 50.000 0.00 0.00 0.00 2.73
3388 5137 1.575419 AATCAAGGCACGGGGTACTA 58.425 50.000 0.00 0.00 0.00 1.82
3389 5138 1.575419 ATCAAGGCACGGGGTACTAA 58.425 50.000 0.00 0.00 0.00 2.24
3390 5139 1.350071 TCAAGGCACGGGGTACTAAA 58.650 50.000 0.00 0.00 0.00 1.85
3391 5140 1.698532 TCAAGGCACGGGGTACTAAAA 59.301 47.619 0.00 0.00 0.00 1.52
3392 5141 1.808343 CAAGGCACGGGGTACTAAAAC 59.192 52.381 0.00 0.00 0.00 2.43
3393 5142 0.037046 AGGCACGGGGTACTAAAACG 60.037 55.000 0.00 0.00 0.00 3.60
3394 5143 0.320683 GGCACGGGGTACTAAAACGT 60.321 55.000 0.00 0.00 38.43 3.99
3395 5144 1.067213 GGCACGGGGTACTAAAACGTA 60.067 52.381 0.00 0.00 35.85 3.57
3396 5145 2.418609 GGCACGGGGTACTAAAACGTAT 60.419 50.000 0.00 0.00 35.85 3.06
3397 5146 3.261580 GCACGGGGTACTAAAACGTATT 58.738 45.455 0.00 0.00 35.85 1.89
3398 5147 3.306973 GCACGGGGTACTAAAACGTATTC 59.693 47.826 0.00 0.00 35.85 1.75
3399 5148 4.493547 CACGGGGTACTAAAACGTATTCA 58.506 43.478 0.00 0.00 35.85 2.57
3400 5149 5.111293 CACGGGGTACTAAAACGTATTCAT 58.889 41.667 0.00 0.00 35.85 2.57
3401 5150 5.581874 CACGGGGTACTAAAACGTATTCATT 59.418 40.000 0.00 0.00 35.85 2.57
3402 5151 5.581874 ACGGGGTACTAAAACGTATTCATTG 59.418 40.000 0.00 0.00 35.85 2.82
3403 5152 5.006941 CGGGGTACTAAAACGTATTCATTGG 59.993 44.000 0.00 0.00 0.00 3.16
3404 5153 5.297527 GGGGTACTAAAACGTATTCATTGGG 59.702 44.000 0.00 0.00 0.00 4.12
3405 5154 6.114767 GGGTACTAAAACGTATTCATTGGGA 58.885 40.000 0.00 0.00 0.00 4.37
3406 5155 6.598850 GGGTACTAAAACGTATTCATTGGGAA 59.401 38.462 0.00 0.00 40.46 3.97
3407 5156 7.414429 GGGTACTAAAACGTATTCATTGGGAAC 60.414 40.741 0.00 0.00 38.60 3.62
3408 5157 7.119553 GGTACTAAAACGTATTCATTGGGAACA 59.880 37.037 0.00 0.00 38.60 3.18
3409 5158 7.696992 ACTAAAACGTATTCATTGGGAACAT 57.303 32.000 0.00 0.00 42.32 2.71
3410 5159 7.535139 ACTAAAACGTATTCATTGGGAACATG 58.465 34.615 0.00 0.00 42.32 3.21
3411 5160 4.370364 AACGTATTCATTGGGAACATGC 57.630 40.909 0.00 0.00 42.32 4.06
3412 5161 3.351740 ACGTATTCATTGGGAACATGCA 58.648 40.909 0.00 0.00 42.32 3.96
3413 5162 3.128589 ACGTATTCATTGGGAACATGCAC 59.871 43.478 0.00 0.00 42.32 4.57
3414 5163 3.489059 CGTATTCATTGGGAACATGCACC 60.489 47.826 0.00 0.00 42.32 5.01
3415 5164 2.006805 TTCATTGGGAACATGCACCA 57.993 45.000 10.27 5.47 42.32 4.17
3416 5165 1.255882 TCATTGGGAACATGCACCAC 58.744 50.000 10.27 2.10 42.32 4.16
3417 5166 0.967662 CATTGGGAACATGCACCACA 59.032 50.000 10.27 4.23 42.32 4.17
3418 5167 1.343789 CATTGGGAACATGCACCACAA 59.656 47.619 10.27 11.10 42.32 3.33
3419 5168 0.749649 TTGGGAACATGCACCACAAC 59.250 50.000 10.27 0.00 42.32 3.32
3420 5169 0.106268 TGGGAACATGCACCACAACT 60.106 50.000 10.27 0.00 33.40 3.16
3421 5170 0.598065 GGGAACATGCACCACAACTC 59.402 55.000 10.27 0.00 0.00 3.01
3422 5171 1.317613 GGAACATGCACCACAACTCA 58.682 50.000 0.00 0.00 0.00 3.41
3423 5172 1.001378 GGAACATGCACCACAACTCAC 60.001 52.381 0.00 0.00 0.00 3.51
3424 5173 1.675483 GAACATGCACCACAACTCACA 59.325 47.619 0.00 0.00 0.00 3.58
3425 5174 1.311859 ACATGCACCACAACTCACAG 58.688 50.000 0.00 0.00 0.00 3.66
3426 5175 0.039798 CATGCACCACAACTCACAGC 60.040 55.000 0.00 0.00 0.00 4.40
3427 5176 0.179009 ATGCACCACAACTCACAGCT 60.179 50.000 0.00 0.00 0.00 4.24
3428 5177 0.467804 TGCACCACAACTCACAGCTA 59.532 50.000 0.00 0.00 0.00 3.32
3429 5178 0.868406 GCACCACAACTCACAGCTAC 59.132 55.000 0.00 0.00 0.00 3.58
3430 5179 1.541233 GCACCACAACTCACAGCTACT 60.541 52.381 0.00 0.00 0.00 2.57
3431 5180 2.408050 CACCACAACTCACAGCTACTC 58.592 52.381 0.00 0.00 0.00 2.59
3432 5181 1.000163 ACCACAACTCACAGCTACTCG 60.000 52.381 0.00 0.00 0.00 4.18
3433 5182 1.269723 CCACAACTCACAGCTACTCGA 59.730 52.381 0.00 0.00 0.00 4.04
3434 5183 2.094494 CCACAACTCACAGCTACTCGAT 60.094 50.000 0.00 0.00 0.00 3.59
3435 5184 3.175152 CACAACTCACAGCTACTCGATC 58.825 50.000 0.00 0.00 0.00 3.69
3436 5185 3.085533 ACAACTCACAGCTACTCGATCT 58.914 45.455 0.00 0.00 0.00 2.75
3437 5186 3.127895 ACAACTCACAGCTACTCGATCTC 59.872 47.826 0.00 0.00 0.00 2.75
3438 5187 2.992593 ACTCACAGCTACTCGATCTCA 58.007 47.619 0.00 0.00 0.00 3.27
3439 5188 3.550820 ACTCACAGCTACTCGATCTCAT 58.449 45.455 0.00 0.00 0.00 2.90
3440 5189 3.314913 ACTCACAGCTACTCGATCTCATG 59.685 47.826 0.00 0.00 0.00 3.07
3441 5190 2.033927 TCACAGCTACTCGATCTCATGC 59.966 50.000 0.00 0.00 0.00 4.06
3442 5191 2.027385 ACAGCTACTCGATCTCATGCA 58.973 47.619 0.00 0.00 0.00 3.96
3443 5192 2.223688 ACAGCTACTCGATCTCATGCAC 60.224 50.000 0.00 0.00 0.00 4.57
3444 5193 1.001924 AGCTACTCGATCTCATGCACG 60.002 52.381 0.00 0.00 0.00 5.34
3445 5194 1.403493 CTACTCGATCTCATGCACGC 58.597 55.000 0.00 0.00 0.00 5.34
3446 5195 0.030773 TACTCGATCTCATGCACGCC 59.969 55.000 0.00 0.00 0.00 5.68
3447 5196 1.067084 CTCGATCTCATGCACGCCT 59.933 57.895 0.00 0.00 0.00 5.52
3448 5197 0.938637 CTCGATCTCATGCACGCCTC 60.939 60.000 0.00 0.00 0.00 4.70
3449 5198 1.067084 CGATCTCATGCACGCCTCT 59.933 57.895 0.00 0.00 0.00 3.69
3450 5199 0.938637 CGATCTCATGCACGCCTCTC 60.939 60.000 0.00 0.00 0.00 3.20
3451 5200 0.599728 GATCTCATGCACGCCTCTCC 60.600 60.000 0.00 0.00 0.00 3.71
3452 5201 1.047596 ATCTCATGCACGCCTCTCCT 61.048 55.000 0.00 0.00 0.00 3.69
3453 5202 1.227205 CTCATGCACGCCTCTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
3454 5203 2.202987 CATGCACGCCTCTCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
3455 5204 2.364842 ATGCACGCCTCTCCTCCT 60.365 61.111 0.00 0.00 0.00 3.69
3456 5205 1.992277 ATGCACGCCTCTCCTCCTT 60.992 57.895 0.00 0.00 0.00 3.36
3457 5206 1.557269 ATGCACGCCTCTCCTCCTTT 61.557 55.000 0.00 0.00 0.00 3.11
3458 5207 1.448717 GCACGCCTCTCCTCCTTTC 60.449 63.158 0.00 0.00 0.00 2.62
3459 5208 1.153745 CACGCCTCTCCTCCTTTCG 60.154 63.158 0.00 0.00 0.00 3.46
3460 5209 1.304217 ACGCCTCTCCTCCTTTCGA 60.304 57.895 0.00 0.00 0.00 3.71
3461 5210 0.684805 ACGCCTCTCCTCCTTTCGAT 60.685 55.000 0.00 0.00 0.00 3.59
3462 5211 1.319541 CGCCTCTCCTCCTTTCGATA 58.680 55.000 0.00 0.00 0.00 2.92
3463 5212 1.681793 CGCCTCTCCTCCTTTCGATAA 59.318 52.381 0.00 0.00 0.00 1.75
3464 5213 2.544069 CGCCTCTCCTCCTTTCGATAAC 60.544 54.545 0.00 0.00 0.00 1.89
3465 5214 2.696187 GCCTCTCCTCCTTTCGATAACT 59.304 50.000 0.00 0.00 0.00 2.24
3466 5215 3.133183 GCCTCTCCTCCTTTCGATAACTT 59.867 47.826 0.00 0.00 0.00 2.66
3467 5216 4.738243 GCCTCTCCTCCTTTCGATAACTTC 60.738 50.000 0.00 0.00 0.00 3.01
3468 5217 4.647399 CCTCTCCTCCTTTCGATAACTTCT 59.353 45.833 0.00 0.00 0.00 2.85
3469 5218 5.221165 CCTCTCCTCCTTTCGATAACTTCTC 60.221 48.000 0.00 0.00 0.00 2.87
3470 5219 4.645588 TCTCCTCCTTTCGATAACTTCTCC 59.354 45.833 0.00 0.00 0.00 3.71
3471 5220 4.611367 TCCTCCTTTCGATAACTTCTCCT 58.389 43.478 0.00 0.00 0.00 3.69
3472 5221 5.024118 TCCTCCTTTCGATAACTTCTCCTT 58.976 41.667 0.00 0.00 0.00 3.36
3473 5222 5.127356 TCCTCCTTTCGATAACTTCTCCTTC 59.873 44.000 0.00 0.00 0.00 3.46
3474 5223 5.128008 CCTCCTTTCGATAACTTCTCCTTCT 59.872 44.000 0.00 0.00 0.00 2.85
3475 5224 5.967088 TCCTTTCGATAACTTCTCCTTCTG 58.033 41.667 0.00 0.00 0.00 3.02
3476 5225 5.480772 TCCTTTCGATAACTTCTCCTTCTGT 59.519 40.000 0.00 0.00 0.00 3.41
3477 5226 6.014499 TCCTTTCGATAACTTCTCCTTCTGTT 60.014 38.462 0.00 0.00 0.00 3.16
3478 5227 6.651225 CCTTTCGATAACTTCTCCTTCTGTTT 59.349 38.462 0.00 0.00 0.00 2.83
3479 5228 7.148557 CCTTTCGATAACTTCTCCTTCTGTTTC 60.149 40.741 0.00 0.00 0.00 2.78
3480 5229 6.591750 TCGATAACTTCTCCTTCTGTTTCT 57.408 37.500 0.00 0.00 0.00 2.52
3481 5230 6.994221 TCGATAACTTCTCCTTCTGTTTCTT 58.006 36.000 0.00 0.00 0.00 2.52
3482 5231 7.442656 TCGATAACTTCTCCTTCTGTTTCTTT 58.557 34.615 0.00 0.00 0.00 2.52
3483 5232 7.385205 TCGATAACTTCTCCTTCTGTTTCTTTG 59.615 37.037 0.00 0.00 0.00 2.77
3484 5233 7.171678 CGATAACTTCTCCTTCTGTTTCTTTGT 59.828 37.037 0.00 0.00 0.00 2.83
3485 5234 9.490379 GATAACTTCTCCTTCTGTTTCTTTGTA 57.510 33.333 0.00 0.00 0.00 2.41
3487 5236 8.753497 AACTTCTCCTTCTGTTTCTTTGTATT 57.247 30.769 0.00 0.00 0.00 1.89
3488 5237 8.384607 ACTTCTCCTTCTGTTTCTTTGTATTC 57.615 34.615 0.00 0.00 0.00 1.75
3489 5238 8.214364 ACTTCTCCTTCTGTTTCTTTGTATTCT 58.786 33.333 0.00 0.00 0.00 2.40
3490 5239 8.608844 TTCTCCTTCTGTTTCTTTGTATTCTC 57.391 34.615 0.00 0.00 0.00 2.87
3491 5240 7.967908 TCTCCTTCTGTTTCTTTGTATTCTCT 58.032 34.615 0.00 0.00 0.00 3.10
3492 5241 8.432805 TCTCCTTCTGTTTCTTTGTATTCTCTT 58.567 33.333 0.00 0.00 0.00 2.85
3493 5242 8.980481 TCCTTCTGTTTCTTTGTATTCTCTTT 57.020 30.769 0.00 0.00 0.00 2.52
3503 5252 8.324163 TCTTTGTATTCTCTTTAACTTCCAGC 57.676 34.615 0.00 0.00 0.00 4.85
3504 5253 6.721571 TTGTATTCTCTTTAACTTCCAGCG 57.278 37.500 0.00 0.00 0.00 5.18
3505 5254 6.032956 TGTATTCTCTTTAACTTCCAGCGA 57.967 37.500 0.00 0.00 0.00 4.93
3506 5255 6.100004 TGTATTCTCTTTAACTTCCAGCGAG 58.900 40.000 0.00 0.00 0.00 5.03
3507 5256 2.960819 TCTCTTTAACTTCCAGCGAGC 58.039 47.619 0.00 0.00 0.00 5.03
3508 5257 2.299013 TCTCTTTAACTTCCAGCGAGCA 59.701 45.455 0.00 0.00 0.00 4.26
3509 5258 2.670414 CTCTTTAACTTCCAGCGAGCAG 59.330 50.000 0.00 0.00 0.00 4.24
3510 5259 2.037251 TCTTTAACTTCCAGCGAGCAGT 59.963 45.455 0.00 0.00 0.00 4.40
3511 5260 1.795768 TTAACTTCCAGCGAGCAGTG 58.204 50.000 0.00 0.00 0.00 3.66
3512 5261 0.670546 TAACTTCCAGCGAGCAGTGC 60.671 55.000 7.13 7.13 0.00 4.40
3513 5262 2.357881 CTTCCAGCGAGCAGTGCA 60.358 61.111 19.20 0.00 33.85 4.57
3514 5263 1.962822 CTTCCAGCGAGCAGTGCAA 60.963 57.895 19.20 0.00 33.85 4.08
3515 5264 1.509644 CTTCCAGCGAGCAGTGCAAA 61.510 55.000 19.20 0.00 33.85 3.68
3516 5265 0.890542 TTCCAGCGAGCAGTGCAAAT 60.891 50.000 19.20 0.00 33.85 2.32
3517 5266 1.136147 CCAGCGAGCAGTGCAAATC 59.864 57.895 19.20 5.26 33.85 2.17
3518 5267 1.136147 CAGCGAGCAGTGCAAATCC 59.864 57.895 19.20 0.48 33.85 3.01
3519 5268 2.042831 AGCGAGCAGTGCAAATCCC 61.043 57.895 19.20 0.00 33.85 3.85
3520 5269 2.787249 CGAGCAGTGCAAATCCCG 59.213 61.111 19.20 6.75 0.00 5.14
3521 5270 2.034879 CGAGCAGTGCAAATCCCGT 61.035 57.895 19.20 0.00 0.00 5.28
3522 5271 1.796796 GAGCAGTGCAAATCCCGTC 59.203 57.895 19.20 0.00 0.00 4.79
3523 5272 1.648467 GAGCAGTGCAAATCCCGTCC 61.648 60.000 19.20 0.00 0.00 4.79
3524 5273 1.675641 GCAGTGCAAATCCCGTCCT 60.676 57.895 11.09 0.00 0.00 3.85
3525 5274 1.648467 GCAGTGCAAATCCCGTCCTC 61.648 60.000 11.09 0.00 0.00 3.71
3526 5275 1.026718 CAGTGCAAATCCCGTCCTCC 61.027 60.000 0.00 0.00 0.00 4.30
3527 5276 1.002624 GTGCAAATCCCGTCCTCCA 60.003 57.895 0.00 0.00 0.00 3.86
3528 5277 0.394352 GTGCAAATCCCGTCCTCCAT 60.394 55.000 0.00 0.00 0.00 3.41
3529 5278 0.107214 TGCAAATCCCGTCCTCCATC 60.107 55.000 0.00 0.00 0.00 3.51
3530 5279 1.160329 GCAAATCCCGTCCTCCATCG 61.160 60.000 0.00 0.00 0.00 3.84
3531 5280 0.464036 CAAATCCCGTCCTCCATCGA 59.536 55.000 0.00 0.00 0.00 3.59
3532 5281 1.070758 CAAATCCCGTCCTCCATCGAT 59.929 52.381 0.00 0.00 0.00 3.59
3533 5282 0.681733 AATCCCGTCCTCCATCGATG 59.318 55.000 18.76 18.76 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 6.511282 GCTCGGTTTAGTGATTTAGCCATAAC 60.511 42.308 0.00 0.00 0.00 1.89
164 210 4.080863 ACTGGTTCCATATCACCTTCTCAC 60.081 45.833 0.00 0.00 33.76 3.51
178 224 2.237143 CCAAGAGCTCATACTGGTTCCA 59.763 50.000 17.77 0.00 0.00 3.53
203 253 2.621070 AGAAGGGCGGGATGTACATAT 58.379 47.619 8.71 0.00 0.00 1.78
205 255 1.141053 GAAGAAGGGCGGGATGTACAT 59.859 52.381 8.43 8.43 0.00 2.29
206 256 0.539986 GAAGAAGGGCGGGATGTACA 59.460 55.000 0.00 0.00 0.00 2.90
208 258 1.342672 GGGAAGAAGGGCGGGATGTA 61.343 60.000 0.00 0.00 0.00 2.29
209 259 2.680370 GGGAAGAAGGGCGGGATGT 61.680 63.158 0.00 0.00 0.00 3.06
281 341 7.278868 CCATAACTTGACCTCTAAACATCAGAC 59.721 40.741 0.00 0.00 0.00 3.51
283 343 7.278868 GTCCATAACTTGACCTCTAAACATCAG 59.721 40.741 0.00 0.00 0.00 2.90
294 354 1.346395 TGTGCGTCCATAACTTGACCT 59.654 47.619 0.00 0.00 0.00 3.85
324 411 4.000988 CTGGAGTAATGCACGGTTACTTT 58.999 43.478 11.49 0.00 41.21 2.66
333 420 6.985188 TGATAAGAAACTGGAGTAATGCAC 57.015 37.500 0.00 0.00 0.00 4.57
395 1906 6.835488 ACTTGGTTCATCATGTAGCCAAATAT 59.165 34.615 12.18 2.93 35.85 1.28
399 1910 4.032960 ACTTGGTTCATCATGTAGCCAA 57.967 40.909 11.16 11.16 35.13 4.52
453 1972 9.709495 TTTGAAAATGAAGGAAAATATGGACAG 57.291 29.630 0.00 0.00 0.00 3.51
462 1981 5.017294 ACGCCTTTGAAAATGAAGGAAAA 57.983 34.783 6.33 0.00 44.15 2.29
486 2005 7.704727 TCATTTATTCCTTTTCCTCCTTACCA 58.295 34.615 0.00 0.00 0.00 3.25
487 2006 8.768501 ATCATTTATTCCTTTTCCTCCTTACC 57.231 34.615 0.00 0.00 0.00 2.85
532 2052 8.265764 AGAGGGAGTACCATAGAAAAATAACAC 58.734 37.037 0.00 0.00 43.89 3.32
573 2097 6.256757 GCATTTCTAGAGTGATCTAAACGCTT 59.743 38.462 10.43 0.00 0.00 4.68
577 2101 7.268586 TCAGGCATTTCTAGAGTGATCTAAAC 58.731 38.462 10.43 0.00 0.00 2.01
579 2103 7.423844 TTCAGGCATTTCTAGAGTGATCTAA 57.576 36.000 10.43 0.00 0.00 2.10
593 2117 7.836183 ACCAACTAGAAGAATATTCAGGCATTT 59.164 33.333 17.56 1.86 0.00 2.32
626 2201 6.582636 TGACTAATGCAAGGACTTTATCGAT 58.417 36.000 2.16 2.16 0.00 3.59
692 2267 4.749245 GTCCTATTGTTGTGGACAGTTG 57.251 45.455 6.52 0.00 46.79 3.16
722 2299 3.572255 GGAACTCCTGCTCCTATACTCTG 59.428 52.174 0.00 0.00 0.00 3.35
754 2331 2.893637 CCGACTGAAATTCGTGGATCT 58.106 47.619 0.00 0.00 34.56 2.75
755 2332 1.327764 GCCGACTGAAATTCGTGGATC 59.672 52.381 0.00 0.00 34.56 3.36
779 2356 4.704540 TGATTTTCGTGCATGGTCCTTTAT 59.295 37.500 5.98 0.00 0.00 1.40
780 2357 4.075682 TGATTTTCGTGCATGGTCCTTTA 58.924 39.130 5.98 0.00 0.00 1.85
781 2358 2.890311 TGATTTTCGTGCATGGTCCTTT 59.110 40.909 5.98 0.00 0.00 3.11
782 2359 2.513753 TGATTTTCGTGCATGGTCCTT 58.486 42.857 5.98 0.00 0.00 3.36
785 2362 3.559238 ACTTGATTTTCGTGCATGGTC 57.441 42.857 5.98 0.81 0.00 4.02
947 2541 6.354794 TGCAATTGGTTCAGTAGTAGTAGT 57.645 37.500 7.72 0.00 0.00 2.73
987 2581 2.222027 GGTGGTGGTGCATCTTATAGC 58.778 52.381 0.00 0.00 0.00 2.97
1020 2625 4.723309 AGAACTCAGAAAATGCTCTTGGT 58.277 39.130 0.00 0.00 0.00 3.67
1219 2894 3.005539 ATGAGGCGCCAGACCACT 61.006 61.111 31.54 5.22 0.00 4.00
1235 2913 4.809496 CCTTCCCAGCCGCAGCAT 62.809 66.667 0.00 0.00 43.56 3.79
1403 3081 1.822615 GAGGCTGAAGAGCTCCTCC 59.177 63.158 10.93 4.70 45.44 4.30
1424 3102 2.815647 GAGAGCTTCCGCAACCCG 60.816 66.667 0.00 0.00 39.10 5.28
1451 3129 1.818642 ACTTGCCAGTGAGCTCATTC 58.181 50.000 21.47 8.07 0.00 2.67
1742 3426 2.171341 GAGACCCACTCAGGTTGTTC 57.829 55.000 0.00 0.00 41.42 3.18
1799 3483 0.890683 GATTGTTGGCAAGGGTGAGG 59.109 55.000 0.00 0.00 38.10 3.86
1986 3674 3.990469 ACTCTTCTGTTACGCTTCACATG 59.010 43.478 0.00 0.00 0.00 3.21
2091 3785 4.908601 TGTTCCCAGATATGACAGTGTT 57.091 40.909 0.00 0.00 0.00 3.32
2092 3786 4.041567 TGTTGTTCCCAGATATGACAGTGT 59.958 41.667 0.00 0.00 0.00 3.55
2093 3787 4.578871 TGTTGTTCCCAGATATGACAGTG 58.421 43.478 0.00 0.00 0.00 3.66
2334 4028 7.126421 ACTGACAGATCATTAACCTCCAGTTAT 59.874 37.037 10.08 0.00 40.62 1.89
2383 4078 2.359900 CTGGACAAGGTAATGAGCACC 58.640 52.381 0.00 0.00 36.22 5.01
2385 4082 2.787473 CCTGGACAAGGTAATGAGCA 57.213 50.000 0.00 0.00 41.74 4.26
2441 4159 6.018262 TGCTATATCCATGAAGTTACAAACGC 60.018 38.462 0.00 0.00 36.23 4.84
2593 4333 9.705290 AGACATACACGATGCAATATTTGTATA 57.295 29.630 7.55 0.00 39.39 1.47
2702 4442 6.579666 TTCCTTCATCCAAACATCTCAAAG 57.420 37.500 0.00 0.00 0.00 2.77
2706 4446 5.195940 TCCATTCCTTCATCCAAACATCTC 58.804 41.667 0.00 0.00 0.00 2.75
2707 4447 5.197224 TCCATTCCTTCATCCAAACATCT 57.803 39.130 0.00 0.00 0.00 2.90
2728 4468 8.940952 ACAACATTAATCTCTACTCTTTTGCTC 58.059 33.333 0.00 0.00 0.00 4.26
2790 4530 3.457380 ACAATGAGGGAGTAGACATGCAT 59.543 43.478 0.00 0.00 0.00 3.96
2832 4572 2.507484 CGTATCCATCCCCGTACAGTA 58.493 52.381 0.00 0.00 0.00 2.74
2851 4591 1.771565 TATCCATAGCCCCGTATCCG 58.228 55.000 0.00 0.00 0.00 4.18
2950 4694 0.235665 ACAGAACGTGAATTGCAGCG 59.764 50.000 0.00 0.00 0.00 5.18
2962 4706 7.709947 TGTAGGATAGGTGTAATAACAGAACG 58.290 38.462 0.00 0.00 35.91 3.95
2977 4721 5.625150 CTCCCCAATTTTCTGTAGGATAGG 58.375 45.833 0.00 0.00 0.00 2.57
3038 4787 9.866655 AAAAATAAGCAGGGACATTATCAGATA 57.133 29.630 0.00 0.00 0.00 1.98
3041 4790 7.703621 CACAAAAATAAGCAGGGACATTATCAG 59.296 37.037 0.00 0.00 0.00 2.90
3072 4821 0.737219 CCTCCAAAGTGCTAGCATGC 59.263 55.000 22.51 10.51 0.00 4.06
3074 4823 2.093235 GTCTCCTCCAAAGTGCTAGCAT 60.093 50.000 22.51 2.08 0.00 3.79
3119 4868 4.162509 ACATGCTAGAAACTAGGAAGACCC 59.837 45.833 8.87 0.00 36.73 4.46
3139 4888 7.664552 ACATCCAATTACAATCATCCAACAT 57.335 32.000 0.00 0.00 0.00 2.71
3202 4951 7.555965 TGCATAATAGCTCCATTATACGACAT 58.444 34.615 0.00 0.00 31.38 3.06
3203 4952 6.930731 TGCATAATAGCTCCATTATACGACA 58.069 36.000 0.00 0.00 31.38 4.35
3210 4959 5.764686 CACCTGTTGCATAATAGCTCCATTA 59.235 40.000 0.00 0.00 34.99 1.90
3232 4981 9.982651 TGCTCTTCCTAATAGACAAATATACAC 57.017 33.333 0.00 0.00 0.00 2.90
3243 4992 5.854010 ACATCGTTGCTCTTCCTAATAGA 57.146 39.130 0.00 0.00 0.00 1.98
3244 4993 5.812642 ACAACATCGTTGCTCTTCCTAATAG 59.187 40.000 6.77 0.00 0.00 1.73
3248 4997 3.678056 ACAACATCGTTGCTCTTCCTA 57.322 42.857 6.77 0.00 0.00 2.94
3254 5003 6.314018 TCAATGAAATACAACATCGTTGCTC 58.686 36.000 6.77 0.66 39.04 4.26
3255 5004 6.252967 TCAATGAAATACAACATCGTTGCT 57.747 33.333 6.77 0.00 39.04 3.91
3278 5027 6.096001 GCCTGGTAATGTTTCTTCTTCATCAT 59.904 38.462 0.00 0.00 0.00 2.45
3299 5048 2.125512 GTGTCTGCTACGGGCCTG 60.126 66.667 11.02 11.02 40.92 4.85
3302 5051 2.125512 CAGGTGTCTGCTACGGGC 60.126 66.667 0.00 0.00 42.22 6.13
3305 5054 1.006220 TGCACAGGTGTCTGCTACG 60.006 57.895 0.91 0.00 44.59 3.51
3306 5055 1.294659 GCTGCACAGGTGTCTGCTAC 61.295 60.000 13.85 0.00 44.59 3.58
3307 5056 1.004560 GCTGCACAGGTGTCTGCTA 60.005 57.895 13.85 0.00 44.59 3.49
3308 5057 2.281345 GCTGCACAGGTGTCTGCT 60.281 61.111 13.85 0.00 44.59 4.24
3309 5058 1.970114 ATGCTGCACAGGTGTCTGC 60.970 57.895 3.57 14.08 44.59 4.26
3310 5059 0.887836 ACATGCTGCACAGGTGTCTG 60.888 55.000 3.57 0.00 42.86 3.51
3311 5060 0.604780 GACATGCTGCACAGGTGTCT 60.605 55.000 20.92 0.00 44.92 3.41
3312 5061 1.580845 GGACATGCTGCACAGGTGTC 61.581 60.000 20.34 20.34 44.92 3.67
3313 5062 1.601759 GGACATGCTGCACAGGTGT 60.602 57.895 3.57 5.22 44.92 4.16
3314 5063 2.683859 CGGACATGCTGCACAGGTG 61.684 63.158 3.57 1.26 44.92 4.00
3316 5065 2.046988 TCGGACATGCTGCACAGG 60.047 61.111 3.57 0.00 35.74 4.00
3317 5066 1.375140 AGTCGGACATGCTGCACAG 60.375 57.895 3.57 3.06 0.00 3.66
3318 5067 1.668793 CAGTCGGACATGCTGCACA 60.669 57.895 3.57 0.00 0.00 4.57
3319 5068 3.171987 CAGTCGGACATGCTGCAC 58.828 61.111 3.57 0.00 0.00 4.57
3322 5071 1.632948 CTGTGCAGTCGGACATGCTG 61.633 60.000 23.33 10.93 43.15 4.41
3323 5072 1.375140 CTGTGCAGTCGGACATGCT 60.375 57.895 23.33 0.00 43.15 3.79
3324 5073 2.393768 CCTGTGCAGTCGGACATGC 61.394 63.158 19.13 19.13 43.15 4.06
3325 5074 1.742880 CCCTGTGCAGTCGGACATG 60.743 63.158 11.27 7.02 43.15 3.21
3326 5075 2.665000 CCCTGTGCAGTCGGACAT 59.335 61.111 11.27 0.00 43.15 3.06
3327 5076 4.314440 GCCCTGTGCAGTCGGACA 62.314 66.667 11.27 0.00 41.75 4.02
3332 5081 3.009115 TAGGGGCCCTGTGCAGTC 61.009 66.667 35.70 1.15 43.89 3.51
3333 5082 3.011517 CTAGGGGCCCTGTGCAGT 61.012 66.667 35.70 9.70 43.89 4.40
3334 5083 4.496336 GCTAGGGGCCCTGTGCAG 62.496 72.222 35.70 24.53 43.89 4.41
3336 5085 4.803908 GTGCTAGGGGCCCTGTGC 62.804 72.222 35.70 33.68 40.92 4.57
3337 5086 1.689233 TAGTGCTAGGGGCCCTGTG 60.689 63.158 35.70 26.37 40.92 3.66
3338 5087 1.689582 GTAGTGCTAGGGGCCCTGT 60.690 63.158 35.70 13.14 40.92 4.00
3339 5088 1.271840 TTGTAGTGCTAGGGGCCCTG 61.272 60.000 35.70 24.21 40.92 4.45
3340 5089 1.082206 TTGTAGTGCTAGGGGCCCT 59.918 57.895 31.38 31.38 40.92 5.19
3341 5090 1.223763 GTTGTAGTGCTAGGGGCCC 59.776 63.158 17.12 17.12 40.92 5.80
3342 5091 0.618981 AAGTTGTAGTGCTAGGGGCC 59.381 55.000 0.00 0.00 40.92 5.80
3343 5092 3.622166 TTAAGTTGTAGTGCTAGGGGC 57.378 47.619 0.00 0.00 42.22 5.80
3344 5093 5.353394 TCATTAAGTTGTAGTGCTAGGGG 57.647 43.478 0.00 0.00 0.00 4.79
3345 5094 8.958119 TTAATCATTAAGTTGTAGTGCTAGGG 57.042 34.615 0.00 0.00 0.00 3.53
3350 5099 9.722056 CCTTGATTAATCATTAAGTTGTAGTGC 57.278 33.333 18.61 0.00 36.56 4.40
3351 5100 9.722056 GCCTTGATTAATCATTAAGTTGTAGTG 57.278 33.333 18.61 5.81 36.56 2.74
3352 5101 9.461312 TGCCTTGATTAATCATTAAGTTGTAGT 57.539 29.630 18.61 0.00 36.56 2.73
3353 5102 9.722056 GTGCCTTGATTAATCATTAAGTTGTAG 57.278 33.333 18.61 9.49 36.56 2.74
3354 5103 8.394877 CGTGCCTTGATTAATCATTAAGTTGTA 58.605 33.333 18.61 0.13 36.56 2.41
3355 5104 7.250569 CGTGCCTTGATTAATCATTAAGTTGT 58.749 34.615 18.61 0.00 36.56 3.32
3356 5105 6.692681 CCGTGCCTTGATTAATCATTAAGTTG 59.307 38.462 18.61 6.93 36.56 3.16
3357 5106 6.183360 CCCGTGCCTTGATTAATCATTAAGTT 60.183 38.462 18.61 0.00 36.56 2.66
3358 5107 5.299279 CCCGTGCCTTGATTAATCATTAAGT 59.701 40.000 18.61 0.00 36.56 2.24
3359 5108 5.278463 CCCCGTGCCTTGATTAATCATTAAG 60.278 44.000 18.61 12.80 36.56 1.85
3360 5109 4.582656 CCCCGTGCCTTGATTAATCATTAA 59.417 41.667 18.61 3.69 36.56 1.40
3361 5110 4.141287 CCCCGTGCCTTGATTAATCATTA 58.859 43.478 18.61 4.41 36.56 1.90
3362 5111 2.958355 CCCCGTGCCTTGATTAATCATT 59.042 45.455 18.61 0.00 36.56 2.57
3363 5112 2.091885 ACCCCGTGCCTTGATTAATCAT 60.092 45.455 18.61 0.00 36.56 2.45
3364 5113 1.283613 ACCCCGTGCCTTGATTAATCA 59.716 47.619 14.23 14.23 34.44 2.57
3365 5114 2.052782 ACCCCGTGCCTTGATTAATC 57.947 50.000 8.60 8.60 0.00 1.75
3366 5115 2.508300 AGTACCCCGTGCCTTGATTAAT 59.492 45.455 0.00 0.00 0.00 1.40
3367 5116 1.910671 AGTACCCCGTGCCTTGATTAA 59.089 47.619 0.00 0.00 0.00 1.40
3368 5117 1.575419 AGTACCCCGTGCCTTGATTA 58.425 50.000 0.00 0.00 0.00 1.75
3369 5118 1.575419 TAGTACCCCGTGCCTTGATT 58.425 50.000 0.00 0.00 0.00 2.57
3370 5119 1.575419 TTAGTACCCCGTGCCTTGAT 58.425 50.000 0.00 0.00 0.00 2.57
3371 5120 1.350071 TTTAGTACCCCGTGCCTTGA 58.650 50.000 0.00 0.00 0.00 3.02
3372 5121 1.808343 GTTTTAGTACCCCGTGCCTTG 59.192 52.381 0.00 0.00 0.00 3.61
3373 5122 1.608801 CGTTTTAGTACCCCGTGCCTT 60.609 52.381 0.00 0.00 0.00 4.35
3374 5123 0.037046 CGTTTTAGTACCCCGTGCCT 60.037 55.000 0.00 0.00 0.00 4.75
3375 5124 0.320683 ACGTTTTAGTACCCCGTGCC 60.321 55.000 0.00 0.00 0.00 5.01
3376 5125 2.362169 TACGTTTTAGTACCCCGTGC 57.638 50.000 0.00 0.00 33.32 5.34
3377 5126 4.493547 TGAATACGTTTTAGTACCCCGTG 58.506 43.478 0.00 0.00 33.32 4.94
3378 5127 4.799564 TGAATACGTTTTAGTACCCCGT 57.200 40.909 0.00 0.00 35.68 5.28
3379 5128 5.006941 CCAATGAATACGTTTTAGTACCCCG 59.993 44.000 0.00 0.00 0.00 5.73
3380 5129 5.297527 CCCAATGAATACGTTTTAGTACCCC 59.702 44.000 0.00 0.00 0.00 4.95
3381 5130 6.114767 TCCCAATGAATACGTTTTAGTACCC 58.885 40.000 0.00 0.00 0.00 3.69
3382 5131 7.119553 TGTTCCCAATGAATACGTTTTAGTACC 59.880 37.037 0.00 0.00 34.90 3.34
3383 5132 8.031848 TGTTCCCAATGAATACGTTTTAGTAC 57.968 34.615 0.00 0.00 34.90 2.73
3384 5133 8.670135 CATGTTCCCAATGAATACGTTTTAGTA 58.330 33.333 0.00 0.00 34.90 1.82
3385 5134 7.535139 CATGTTCCCAATGAATACGTTTTAGT 58.465 34.615 0.00 0.00 34.90 2.24
3386 5135 6.472163 GCATGTTCCCAATGAATACGTTTTAG 59.528 38.462 0.00 0.00 34.90 1.85
3387 5136 6.071896 TGCATGTTCCCAATGAATACGTTTTA 60.072 34.615 0.00 0.00 34.90 1.52
3388 5137 5.167845 GCATGTTCCCAATGAATACGTTTT 58.832 37.500 0.00 0.00 34.90 2.43
3389 5138 4.219507 TGCATGTTCCCAATGAATACGTTT 59.780 37.500 0.00 0.00 34.90 3.60
3390 5139 3.761218 TGCATGTTCCCAATGAATACGTT 59.239 39.130 0.00 0.00 34.90 3.99
3391 5140 3.128589 GTGCATGTTCCCAATGAATACGT 59.871 43.478 0.00 0.00 34.90 3.57
3392 5141 3.489059 GGTGCATGTTCCCAATGAATACG 60.489 47.826 0.00 0.00 34.90 3.06
3393 5142 3.446873 TGGTGCATGTTCCCAATGAATAC 59.553 43.478 0.00 0.00 34.90 1.89
3394 5143 3.446873 GTGGTGCATGTTCCCAATGAATA 59.553 43.478 0.00 0.00 34.90 1.75
3395 5144 2.234414 GTGGTGCATGTTCCCAATGAAT 59.766 45.455 0.00 0.00 34.90 2.57
3396 5145 1.617850 GTGGTGCATGTTCCCAATGAA 59.382 47.619 0.00 0.00 0.00 2.57
3397 5146 1.255882 GTGGTGCATGTTCCCAATGA 58.744 50.000 0.00 0.00 0.00 2.57
3398 5147 0.967662 TGTGGTGCATGTTCCCAATG 59.032 50.000 0.00 0.00 0.00 2.82
3399 5148 1.344114 GTTGTGGTGCATGTTCCCAAT 59.656 47.619 0.00 0.00 0.00 3.16
3400 5149 0.749649 GTTGTGGTGCATGTTCCCAA 59.250 50.000 0.00 2.17 0.00 4.12
3401 5150 0.106268 AGTTGTGGTGCATGTTCCCA 60.106 50.000 0.00 0.00 0.00 4.37
3402 5151 0.598065 GAGTTGTGGTGCATGTTCCC 59.402 55.000 0.00 0.00 0.00 3.97
3403 5152 1.001378 GTGAGTTGTGGTGCATGTTCC 60.001 52.381 0.00 0.00 0.00 3.62
3404 5153 1.675483 TGTGAGTTGTGGTGCATGTTC 59.325 47.619 0.00 0.00 0.00 3.18
3405 5154 1.677576 CTGTGAGTTGTGGTGCATGTT 59.322 47.619 0.00 0.00 0.00 2.71
3406 5155 1.311859 CTGTGAGTTGTGGTGCATGT 58.688 50.000 0.00 0.00 0.00 3.21
3407 5156 0.039798 GCTGTGAGTTGTGGTGCATG 60.040 55.000 0.00 0.00 0.00 4.06
3408 5157 0.179009 AGCTGTGAGTTGTGGTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
3409 5158 0.467804 TAGCTGTGAGTTGTGGTGCA 59.532 50.000 0.00 0.00 0.00 4.57
3410 5159 0.868406 GTAGCTGTGAGTTGTGGTGC 59.132 55.000 0.00 0.00 0.00 5.01
3411 5160 2.408050 GAGTAGCTGTGAGTTGTGGTG 58.592 52.381 0.00 0.00 0.00 4.17
3412 5161 1.000163 CGAGTAGCTGTGAGTTGTGGT 60.000 52.381 0.00 0.00 0.00 4.16
3413 5162 1.269723 TCGAGTAGCTGTGAGTTGTGG 59.730 52.381 0.00 0.00 0.00 4.17
3414 5163 2.706555 TCGAGTAGCTGTGAGTTGTG 57.293 50.000 0.00 0.00 0.00 3.33
3415 5164 3.085533 AGATCGAGTAGCTGTGAGTTGT 58.914 45.455 0.00 0.00 0.00 3.32
3416 5165 3.127721 TGAGATCGAGTAGCTGTGAGTTG 59.872 47.826 0.00 0.00 0.00 3.16
3417 5166 3.348119 TGAGATCGAGTAGCTGTGAGTT 58.652 45.455 0.00 0.00 0.00 3.01
3418 5167 2.992593 TGAGATCGAGTAGCTGTGAGT 58.007 47.619 0.00 0.00 0.00 3.41
3419 5168 3.852939 GCATGAGATCGAGTAGCTGTGAG 60.853 52.174 0.00 0.00 0.00 3.51
3420 5169 2.033927 GCATGAGATCGAGTAGCTGTGA 59.966 50.000 0.00 0.00 0.00 3.58
3421 5170 2.223665 TGCATGAGATCGAGTAGCTGTG 60.224 50.000 0.00 0.00 0.00 3.66
3422 5171 2.027385 TGCATGAGATCGAGTAGCTGT 58.973 47.619 0.00 0.00 0.00 4.40
3423 5172 2.392821 GTGCATGAGATCGAGTAGCTG 58.607 52.381 0.00 0.00 0.00 4.24
3424 5173 1.001924 CGTGCATGAGATCGAGTAGCT 60.002 52.381 0.00 0.00 0.00 3.32
3425 5174 1.403493 CGTGCATGAGATCGAGTAGC 58.597 55.000 0.00 0.00 0.00 3.58
3426 5175 1.403493 GCGTGCATGAGATCGAGTAG 58.597 55.000 10.93 0.00 0.00 2.57
3427 5176 0.030773 GGCGTGCATGAGATCGAGTA 59.969 55.000 10.93 0.00 0.00 2.59
3428 5177 1.227089 GGCGTGCATGAGATCGAGT 60.227 57.895 10.93 0.00 0.00 4.18
3429 5178 0.938637 GAGGCGTGCATGAGATCGAG 60.939 60.000 10.93 0.00 0.00 4.04
3430 5179 1.066422 GAGGCGTGCATGAGATCGA 59.934 57.895 10.93 0.00 0.00 3.59
3431 5180 0.938637 GAGAGGCGTGCATGAGATCG 60.939 60.000 10.93 0.00 0.00 3.69
3432 5181 0.599728 GGAGAGGCGTGCATGAGATC 60.600 60.000 10.93 3.74 0.00 2.75
3433 5182 1.047596 AGGAGAGGCGTGCATGAGAT 61.048 55.000 10.93 0.00 0.00 2.75
3434 5183 1.670949 GAGGAGAGGCGTGCATGAGA 61.671 60.000 10.93 0.00 0.00 3.27
3435 5184 1.227205 GAGGAGAGGCGTGCATGAG 60.227 63.158 10.93 0.00 0.00 2.90
3436 5185 2.725312 GGAGGAGAGGCGTGCATGA 61.725 63.158 10.93 0.00 0.00 3.07
3437 5186 2.202987 GGAGGAGAGGCGTGCATG 60.203 66.667 0.09 0.09 0.00 4.06
3438 5187 1.557269 AAAGGAGGAGAGGCGTGCAT 61.557 55.000 0.00 0.00 0.00 3.96
3439 5188 2.172483 GAAAGGAGGAGAGGCGTGCA 62.172 60.000 0.00 0.00 0.00 4.57
3440 5189 1.448717 GAAAGGAGGAGAGGCGTGC 60.449 63.158 0.00 0.00 0.00 5.34
3441 5190 1.153745 CGAAAGGAGGAGAGGCGTG 60.154 63.158 0.00 0.00 0.00 5.34
3442 5191 0.684805 ATCGAAAGGAGGAGAGGCGT 60.685 55.000 0.00 0.00 0.00 5.68
3443 5192 1.319541 TATCGAAAGGAGGAGAGGCG 58.680 55.000 0.00 0.00 0.00 5.52
3444 5193 2.696187 AGTTATCGAAAGGAGGAGAGGC 59.304 50.000 0.00 0.00 0.00 4.70
3445 5194 4.647399 AGAAGTTATCGAAAGGAGGAGAGG 59.353 45.833 0.00 0.00 0.00 3.69
3446 5195 5.221165 GGAGAAGTTATCGAAAGGAGGAGAG 60.221 48.000 0.00 0.00 0.00 3.20
3447 5196 4.645588 GGAGAAGTTATCGAAAGGAGGAGA 59.354 45.833 0.00 0.00 0.00 3.71
3448 5197 4.647399 AGGAGAAGTTATCGAAAGGAGGAG 59.353 45.833 0.00 0.00 0.00 3.69
3449 5198 4.611367 AGGAGAAGTTATCGAAAGGAGGA 58.389 43.478 0.00 0.00 0.00 3.71
3450 5199 5.128008 AGAAGGAGAAGTTATCGAAAGGAGG 59.872 44.000 0.00 0.00 0.00 4.30
3451 5200 6.039616 CAGAAGGAGAAGTTATCGAAAGGAG 58.960 44.000 0.00 0.00 0.00 3.69
3452 5201 5.480772 ACAGAAGGAGAAGTTATCGAAAGGA 59.519 40.000 0.00 0.00 0.00 3.36
3453 5202 5.725362 ACAGAAGGAGAAGTTATCGAAAGG 58.275 41.667 0.00 0.00 0.00 3.11
3454 5203 7.600752 AGAAACAGAAGGAGAAGTTATCGAAAG 59.399 37.037 0.00 0.00 0.00 2.62
3455 5204 7.442656 AGAAACAGAAGGAGAAGTTATCGAAA 58.557 34.615 0.00 0.00 0.00 3.46
3456 5205 6.994221 AGAAACAGAAGGAGAAGTTATCGAA 58.006 36.000 0.00 0.00 0.00 3.71
3457 5206 6.591750 AGAAACAGAAGGAGAAGTTATCGA 57.408 37.500 0.00 0.00 0.00 3.59
3458 5207 7.171678 ACAAAGAAACAGAAGGAGAAGTTATCG 59.828 37.037 0.00 0.00 0.00 2.92
3459 5208 8.384607 ACAAAGAAACAGAAGGAGAAGTTATC 57.615 34.615 0.00 0.00 0.00 1.75
3461 5210 9.847224 AATACAAAGAAACAGAAGGAGAAGTTA 57.153 29.630 0.00 0.00 0.00 2.24
3462 5211 8.753497 AATACAAAGAAACAGAAGGAGAAGTT 57.247 30.769 0.00 0.00 0.00 2.66
3463 5212 8.214364 AGAATACAAAGAAACAGAAGGAGAAGT 58.786 33.333 0.00 0.00 0.00 3.01
3464 5213 8.614469 AGAATACAAAGAAACAGAAGGAGAAG 57.386 34.615 0.00 0.00 0.00 2.85
3465 5214 8.432805 AGAGAATACAAAGAAACAGAAGGAGAA 58.567 33.333 0.00 0.00 0.00 2.87
3466 5215 7.967908 AGAGAATACAAAGAAACAGAAGGAGA 58.032 34.615 0.00 0.00 0.00 3.71
3467 5216 8.614469 AAGAGAATACAAAGAAACAGAAGGAG 57.386 34.615 0.00 0.00 0.00 3.69
3468 5217 8.980481 AAAGAGAATACAAAGAAACAGAAGGA 57.020 30.769 0.00 0.00 0.00 3.36
3477 5226 8.784043 GCTGGAAGTTAAAGAGAATACAAAGAA 58.216 33.333 0.00 0.00 35.30 2.52
3478 5227 7.117812 CGCTGGAAGTTAAAGAGAATACAAAGA 59.882 37.037 0.00 0.00 35.30 2.52
3479 5228 7.117812 TCGCTGGAAGTTAAAGAGAATACAAAG 59.882 37.037 0.00 0.00 35.30 2.77
3480 5229 6.932400 TCGCTGGAAGTTAAAGAGAATACAAA 59.068 34.615 0.00 0.00 35.30 2.83
3481 5230 6.460781 TCGCTGGAAGTTAAAGAGAATACAA 58.539 36.000 0.00 0.00 35.30 2.41
3482 5231 6.032956 TCGCTGGAAGTTAAAGAGAATACA 57.967 37.500 0.00 0.00 35.30 2.29
3483 5232 5.005875 GCTCGCTGGAAGTTAAAGAGAATAC 59.994 44.000 0.00 0.00 35.30 1.89
3484 5233 5.109903 GCTCGCTGGAAGTTAAAGAGAATA 58.890 41.667 0.00 0.00 35.30 1.75
3485 5234 3.935828 GCTCGCTGGAAGTTAAAGAGAAT 59.064 43.478 0.00 0.00 35.30 2.40
3486 5235 3.244078 TGCTCGCTGGAAGTTAAAGAGAA 60.244 43.478 0.00 0.00 35.30 2.87
3487 5236 2.299013 TGCTCGCTGGAAGTTAAAGAGA 59.701 45.455 0.00 0.00 35.30 3.10
3488 5237 2.670414 CTGCTCGCTGGAAGTTAAAGAG 59.330 50.000 0.00 0.00 35.30 2.85
3489 5238 2.037251 ACTGCTCGCTGGAAGTTAAAGA 59.963 45.455 0.99 0.00 35.30 2.52
3490 5239 2.158449 CACTGCTCGCTGGAAGTTAAAG 59.842 50.000 0.99 0.00 35.30 1.85
3491 5240 2.143122 CACTGCTCGCTGGAAGTTAAA 58.857 47.619 0.99 0.00 35.30 1.52
3492 5241 1.795768 CACTGCTCGCTGGAAGTTAA 58.204 50.000 0.99 0.00 35.30 2.01
3493 5242 0.670546 GCACTGCTCGCTGGAAGTTA 60.671 55.000 0.00 0.00 35.30 2.24
3494 5243 1.963338 GCACTGCTCGCTGGAAGTT 60.963 57.895 0.00 0.00 35.30 2.66
3495 5244 2.358003 GCACTGCTCGCTGGAAGT 60.358 61.111 0.00 0.00 35.30 3.01
3496 5245 1.509644 TTTGCACTGCTCGCTGGAAG 61.510 55.000 1.98 0.00 0.00 3.46
3497 5246 0.890542 ATTTGCACTGCTCGCTGGAA 60.891 50.000 1.98 0.00 0.00 3.53
3498 5247 1.300971 GATTTGCACTGCTCGCTGGA 61.301 55.000 1.98 0.00 0.00 3.86
3499 5248 1.136147 GATTTGCACTGCTCGCTGG 59.864 57.895 1.98 0.00 0.00 4.85
3500 5249 1.136147 GGATTTGCACTGCTCGCTG 59.864 57.895 1.98 0.00 0.00 5.18
3501 5250 2.042831 GGGATTTGCACTGCTCGCT 61.043 57.895 1.98 0.00 0.00 4.93
3502 5251 2.486966 GGGATTTGCACTGCTCGC 59.513 61.111 1.98 0.00 0.00 5.03
3503 5252 1.970917 GACGGGATTTGCACTGCTCG 61.971 60.000 1.98 0.00 0.00 5.03
3504 5253 1.648467 GGACGGGATTTGCACTGCTC 61.648 60.000 1.98 0.00 0.00 4.26
3505 5254 1.675641 GGACGGGATTTGCACTGCT 60.676 57.895 1.98 0.00 0.00 4.24
3506 5255 1.648467 GAGGACGGGATTTGCACTGC 61.648 60.000 0.00 0.00 0.00 4.40
3507 5256 1.026718 GGAGGACGGGATTTGCACTG 61.027 60.000 0.00 0.00 0.00 3.66
3508 5257 1.299976 GGAGGACGGGATTTGCACT 59.700 57.895 0.00 0.00 0.00 4.40
3509 5258 0.394352 ATGGAGGACGGGATTTGCAC 60.394 55.000 0.00 0.00 0.00 4.57
3510 5259 0.107214 GATGGAGGACGGGATTTGCA 60.107 55.000 0.00 0.00 0.00 4.08
3511 5260 1.160329 CGATGGAGGACGGGATTTGC 61.160 60.000 0.00 0.00 0.00 3.68
3512 5261 0.464036 TCGATGGAGGACGGGATTTG 59.536 55.000 0.00 0.00 0.00 2.32
3513 5262 1.070758 CATCGATGGAGGACGGGATTT 59.929 52.381 17.96 0.00 0.00 2.17
3514 5263 0.681733 CATCGATGGAGGACGGGATT 59.318 55.000 17.96 0.00 0.00 3.01
3515 5264 2.355946 CATCGATGGAGGACGGGAT 58.644 57.895 17.96 0.00 0.00 3.85
3516 5265 3.856309 CATCGATGGAGGACGGGA 58.144 61.111 17.96 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.