Multiple sequence alignment - TraesCS4A01G344500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G344500 chr4A 100.000 2594 0 0 1 2594 624300584 624297991 0.000000e+00 4791.0
1 TraesCS4A01G344500 chr6A 94.165 1251 46 6 421 1664 613638686 613639916 0.000000e+00 1881.0
2 TraesCS4A01G344500 chr6A 93.258 712 22 6 1885 2594 613639917 613640604 0.000000e+00 1026.0
3 TraesCS4A01G344500 chr2B 89.810 1423 81 31 1197 2594 643304041 643302658 0.000000e+00 1766.0
4 TraesCS4A01G344500 chr2B 80.517 1083 150 34 1096 2147 17113931 17114983 0.000000e+00 774.0
5 TraesCS4A01G344500 chr2B 90.301 299 18 2 973 1260 643304339 643304041 5.240000e-102 381.0
6 TraesCS4A01G344500 chr3B 87.361 989 63 34 1634 2594 615533641 615532687 0.000000e+00 1077.0
7 TraesCS4A01G344500 chr3B 93.433 670 33 4 973 1635 615544049 615543384 0.000000e+00 983.0
8 TraesCS4A01G344500 chr5B 82.155 891 106 31 1184 2043 684467028 684466160 0.000000e+00 715.0
9 TraesCS4A01G344500 chr5B 95.047 424 20 1 1 423 169256379 169256802 0.000000e+00 665.0
10 TraesCS4A01G344500 chr5B 84.401 609 68 12 1097 1688 662807807 662808405 8.050000e-160 573.0
11 TraesCS4A01G344500 chr5B 78.059 237 43 7 422 655 576310318 576310548 9.680000e-30 141.0
12 TraesCS4A01G344500 chr5A 96.437 421 15 0 1 421 8012646 8013066 0.000000e+00 695.0
13 TraesCS4A01G344500 chr5A 95.972 422 16 1 1 421 7983063 7983484 0.000000e+00 684.0
14 TraesCS4A01G344500 chr5A 95.508 423 17 1 1 421 7957695 7958117 0.000000e+00 675.0
15 TraesCS4A01G344500 chr3D 89.236 576 35 14 423 975 68438761 68439332 0.000000e+00 695.0
16 TraesCS4A01G344500 chr3D 80.995 442 40 19 1319 1748 15711481 15711072 6.970000e-81 311.0
17 TraesCS4A01G344500 chr3D 81.395 258 44 3 423 680 459486966 459487219 9.410000e-50 207.0
18 TraesCS4A01G344500 chr3D 92.857 56 3 1 973 1027 15716066 15716121 2.140000e-11 80.5
19 TraesCS4A01G344500 chr7B 96.135 414 16 0 1 414 70828760 70828347 0.000000e+00 676.0
20 TraesCS4A01G344500 chr7B 95.904 415 16 1 1 414 638252250 638251836 0.000000e+00 671.0
21 TraesCS4A01G344500 chr7B 77.742 310 42 16 1506 1801 736613394 736613098 5.740000e-37 165.0
22 TraesCS4A01G344500 chr1B 96.135 414 16 0 1 414 614584203 614584616 0.000000e+00 676.0
23 TraesCS4A01G344500 chr1B 72.504 571 113 32 423 975 549754765 549755309 7.480000e-31 145.0
24 TraesCS4A01G344500 chr1A 95.724 421 17 1 1 420 541720907 541720487 0.000000e+00 676.0
25 TraesCS4A01G344500 chr1A 95.261 422 19 1 1 421 99917855 99917434 0.000000e+00 667.0
26 TraesCS4A01G344500 chr1A 82.158 241 40 3 423 662 358920551 358920789 1.220000e-48 204.0
27 TraesCS4A01G344500 chr1D 82.166 471 68 10 423 890 385091376 385090919 8.700000e-105 390.0
28 TraesCS4A01G344500 chrUn 79.832 238 42 4 421 655 33278234 33278468 4.440000e-38 169.0
29 TraesCS4A01G344500 chrUn 80.365 219 37 5 421 636 400230300 400230085 7.430000e-36 161.0
30 TraesCS4A01G344500 chrUn 81.500 200 33 3 421 619 400280424 400280620 7.430000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G344500 chr4A 624297991 624300584 2593 True 4791.0 4791 100.0000 1 2594 1 chr4A.!!$R1 2593
1 TraesCS4A01G344500 chr6A 613638686 613640604 1918 False 1453.5 1881 93.7115 421 2594 2 chr6A.!!$F1 2173
2 TraesCS4A01G344500 chr2B 643302658 643304339 1681 True 1073.5 1766 90.0555 973 2594 2 chr2B.!!$R1 1621
3 TraesCS4A01G344500 chr2B 17113931 17114983 1052 False 774.0 774 80.5170 1096 2147 1 chr2B.!!$F1 1051
4 TraesCS4A01G344500 chr3B 615532687 615533641 954 True 1077.0 1077 87.3610 1634 2594 1 chr3B.!!$R1 960
5 TraesCS4A01G344500 chr3B 615543384 615544049 665 True 983.0 983 93.4330 973 1635 1 chr3B.!!$R2 662
6 TraesCS4A01G344500 chr5B 684466160 684467028 868 True 715.0 715 82.1550 1184 2043 1 chr5B.!!$R1 859
7 TraesCS4A01G344500 chr5B 662807807 662808405 598 False 573.0 573 84.4010 1097 1688 1 chr5B.!!$F3 591
8 TraesCS4A01G344500 chr3D 68438761 68439332 571 False 695.0 695 89.2360 423 975 1 chr3D.!!$F2 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.03601 ATCTTCCTTCCTGCCACACG 60.036 55.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1868 0.252197 CGGGGGAAAGACTCCGATTT 59.748 55.0 0.0 0.0 46.51 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.915871 GTGCATGTATCATGACAATTTTAGTT 57.084 30.769 12.98 0.00 31.83 2.24
26 27 9.357652 GTGCATGTATCATGACAATTTTAGTTT 57.642 29.630 12.98 0.00 31.83 2.66
34 35 8.347004 TCATGACAATTTTAGTTTATGGCTCA 57.653 30.769 0.00 0.00 0.00 4.26
35 36 8.970020 TCATGACAATTTTAGTTTATGGCTCAT 58.030 29.630 0.00 0.00 0.00 2.90
36 37 9.027129 CATGACAATTTTAGTTTATGGCTCATG 57.973 33.333 0.00 0.00 0.00 3.07
37 38 8.347004 TGACAATTTTAGTTTATGGCTCATGA 57.653 30.769 0.00 0.00 0.00 3.07
38 39 8.243426 TGACAATTTTAGTTTATGGCTCATGAC 58.757 33.333 0.00 0.00 0.00 3.06
39 40 8.121305 ACAATTTTAGTTTATGGCTCATGACA 57.879 30.769 0.00 0.00 34.57 3.58
40 41 8.584157 ACAATTTTAGTTTATGGCTCATGACAA 58.416 29.630 0.00 0.00 33.27 3.18
41 42 9.421806 CAATTTTAGTTTATGGCTCATGACAAA 57.578 29.630 0.00 0.00 33.27 2.83
43 44 9.807649 ATTTTAGTTTATGGCTCATGACAAATC 57.192 29.630 0.00 0.00 33.27 2.17
44 45 8.579850 TTTAGTTTATGGCTCATGACAAATCT 57.420 30.769 0.00 0.00 33.27 2.40
45 46 9.679661 TTTAGTTTATGGCTCATGACAAATCTA 57.320 29.630 0.00 0.00 33.27 1.98
46 47 7.798596 AGTTTATGGCTCATGACAAATCTAG 57.201 36.000 0.00 0.00 33.27 2.43
47 48 7.341805 AGTTTATGGCTCATGACAAATCTAGT 58.658 34.615 0.00 0.00 33.27 2.57
48 49 7.831193 AGTTTATGGCTCATGACAAATCTAGTT 59.169 33.333 0.00 0.00 33.27 2.24
49 50 8.462016 GTTTATGGCTCATGACAAATCTAGTTT 58.538 33.333 0.00 0.00 33.27 2.66
50 51 6.690194 ATGGCTCATGACAAATCTAGTTTC 57.310 37.500 0.00 0.00 33.27 2.78
51 52 5.809001 TGGCTCATGACAAATCTAGTTTCT 58.191 37.500 0.00 0.00 0.00 2.52
52 53 6.240894 TGGCTCATGACAAATCTAGTTTCTT 58.759 36.000 0.00 0.00 0.00 2.52
53 54 7.394016 TGGCTCATGACAAATCTAGTTTCTTA 58.606 34.615 0.00 0.00 0.00 2.10
54 55 7.882791 TGGCTCATGACAAATCTAGTTTCTTAA 59.117 33.333 0.00 0.00 0.00 1.85
55 56 8.897752 GGCTCATGACAAATCTAGTTTCTTAAT 58.102 33.333 0.00 0.00 0.00 1.40
60 61 8.575649 TGACAAATCTAGTTTCTTAATTCCCC 57.424 34.615 0.00 0.00 0.00 4.81
61 62 7.335924 TGACAAATCTAGTTTCTTAATTCCCCG 59.664 37.037 0.00 0.00 0.00 5.73
62 63 7.173032 ACAAATCTAGTTTCTTAATTCCCCGT 58.827 34.615 0.00 0.00 0.00 5.28
63 64 7.668469 ACAAATCTAGTTTCTTAATTCCCCGTT 59.332 33.333 0.00 0.00 0.00 4.44
64 65 8.520351 CAAATCTAGTTTCTTAATTCCCCGTTT 58.480 33.333 0.00 0.00 0.00 3.60
65 66 8.645814 AATCTAGTTTCTTAATTCCCCGTTTT 57.354 30.769 0.00 0.00 0.00 2.43
66 67 9.743581 AATCTAGTTTCTTAATTCCCCGTTTTA 57.256 29.630 0.00 0.00 0.00 1.52
67 68 9.916360 ATCTAGTTTCTTAATTCCCCGTTTTAT 57.084 29.630 0.00 0.00 0.00 1.40
75 76 9.463902 TCTTAATTCCCCGTTTTATAAATGTCA 57.536 29.630 0.00 0.00 0.00 3.58
79 80 9.780186 AATTCCCCGTTTTATAAATGTCAAAAA 57.220 25.926 0.00 0.00 0.00 1.94
80 81 9.952030 ATTCCCCGTTTTATAAATGTCAAAAAT 57.048 25.926 0.00 0.00 0.00 1.82
81 82 9.780186 TTCCCCGTTTTATAAATGTCAAAAATT 57.220 25.926 0.00 0.00 0.00 1.82
122 123 9.807649 AAGAAAATAGTTGAAACATATCATGGC 57.192 29.630 0.00 0.00 33.60 4.40
123 124 8.970020 AGAAAATAGTTGAAACATATCATGGCA 58.030 29.630 0.00 0.00 33.60 4.92
124 125 9.585099 GAAAATAGTTGAAACATATCATGGCAA 57.415 29.630 0.00 0.00 33.60 4.52
125 126 8.931385 AAATAGTTGAAACATATCATGGCAAC 57.069 30.769 0.00 0.00 39.24 4.17
126 127 7.886629 ATAGTTGAAACATATCATGGCAACT 57.113 32.000 18.95 18.95 44.91 3.16
127 128 6.594788 AGTTGAAACATATCATGGCAACTT 57.405 33.333 13.64 0.00 42.74 2.66
128 129 6.624423 AGTTGAAACATATCATGGCAACTTC 58.376 36.000 13.64 0.00 42.74 3.01
129 130 5.233957 TGAAACATATCATGGCAACTTCG 57.766 39.130 0.00 0.00 37.61 3.79
130 131 4.096231 TGAAACATATCATGGCAACTTCGG 59.904 41.667 0.00 0.00 37.61 4.30
131 132 3.281727 ACATATCATGGCAACTTCGGT 57.718 42.857 0.00 0.00 37.61 4.69
132 133 2.945008 ACATATCATGGCAACTTCGGTG 59.055 45.455 0.00 0.00 37.61 4.94
133 134 2.779755 TATCATGGCAACTTCGGTGT 57.220 45.000 0.00 0.00 37.61 4.16
134 135 2.779755 ATCATGGCAACTTCGGTGTA 57.220 45.000 0.00 0.00 37.61 2.90
135 136 2.552599 TCATGGCAACTTCGGTGTAA 57.447 45.000 0.00 0.00 37.61 2.41
136 137 2.852449 TCATGGCAACTTCGGTGTAAA 58.148 42.857 0.00 0.00 37.61 2.01
137 138 2.550606 TCATGGCAACTTCGGTGTAAAC 59.449 45.455 0.00 0.00 37.61 2.01
138 139 2.039818 TGGCAACTTCGGTGTAAACA 57.960 45.000 0.00 0.00 37.61 2.83
139 140 2.577700 TGGCAACTTCGGTGTAAACAT 58.422 42.857 0.00 0.00 37.61 2.71
140 141 2.550606 TGGCAACTTCGGTGTAAACATC 59.449 45.455 0.00 0.00 37.61 3.06
141 142 2.550606 GGCAACTTCGGTGTAAACATCA 59.449 45.455 0.00 0.00 0.00 3.07
142 143 3.190535 GGCAACTTCGGTGTAAACATCAT 59.809 43.478 0.00 0.00 0.00 2.45
143 144 4.158384 GCAACTTCGGTGTAAACATCATG 58.842 43.478 0.00 0.00 0.00 3.07
144 145 4.722194 CAACTTCGGTGTAAACATCATGG 58.278 43.478 0.00 0.00 0.00 3.66
145 146 2.747446 ACTTCGGTGTAAACATCATGGC 59.253 45.455 0.00 0.00 0.00 4.40
146 147 2.481289 TCGGTGTAAACATCATGGCA 57.519 45.000 0.00 0.00 0.00 4.92
147 148 2.784347 TCGGTGTAAACATCATGGCAA 58.216 42.857 0.00 0.00 0.00 4.52
148 149 3.351740 TCGGTGTAAACATCATGGCAAT 58.648 40.909 0.00 0.00 0.00 3.56
149 150 3.761218 TCGGTGTAAACATCATGGCAATT 59.239 39.130 0.00 0.00 0.00 2.32
150 151 4.104776 CGGTGTAAACATCATGGCAATTC 58.895 43.478 0.00 0.00 0.00 2.17
151 152 4.380339 CGGTGTAAACATCATGGCAATTCA 60.380 41.667 0.00 0.00 0.00 2.57
152 153 5.663456 GGTGTAAACATCATGGCAATTCAT 58.337 37.500 0.00 0.00 0.00 2.57
153 154 6.459435 CGGTGTAAACATCATGGCAATTCATA 60.459 38.462 0.00 0.00 0.00 2.15
154 155 7.436118 GGTGTAAACATCATGGCAATTCATAT 58.564 34.615 0.00 0.00 0.00 1.78
155 156 7.383029 GGTGTAAACATCATGGCAATTCATATG 59.617 37.037 0.00 0.00 0.00 1.78
156 157 7.383029 GTGTAAACATCATGGCAATTCATATGG 59.617 37.037 2.13 0.00 0.00 2.74
157 158 6.734502 AAACATCATGGCAATTCATATGGA 57.265 33.333 2.13 0.00 0.00 3.41
158 159 6.734502 AACATCATGGCAATTCATATGGAA 57.265 33.333 2.13 0.00 40.46 3.53
160 161 8.425237 AACATCATGGCAATTCATATGGAATA 57.575 30.769 2.13 0.00 45.46 1.75
161 162 8.063200 ACATCATGGCAATTCATATGGAATAG 57.937 34.615 2.13 0.00 45.46 1.73
162 163 7.891712 ACATCATGGCAATTCATATGGAATAGA 59.108 33.333 2.13 0.00 45.46 1.98
163 164 7.692460 TCATGGCAATTCATATGGAATAGAC 57.308 36.000 2.13 0.00 45.46 2.59
164 165 7.232910 TCATGGCAATTCATATGGAATAGACA 58.767 34.615 2.13 0.00 45.46 3.41
165 166 7.891712 TCATGGCAATTCATATGGAATAGACAT 59.108 33.333 2.13 0.00 45.46 3.06
166 167 7.457024 TGGCAATTCATATGGAATAGACATG 57.543 36.000 2.13 0.00 45.46 3.21
167 168 6.434965 TGGCAATTCATATGGAATAGACATGG 59.565 38.462 2.13 0.00 45.46 3.66
168 169 6.327934 GCAATTCATATGGAATAGACATGGC 58.672 40.000 2.13 0.00 45.46 4.40
169 170 6.071784 GCAATTCATATGGAATAGACATGGCA 60.072 38.462 0.00 0.00 45.46 4.92
170 171 7.524202 GCAATTCATATGGAATAGACATGGCAA 60.524 37.037 0.00 0.00 45.46 4.52
171 172 6.882610 TTCATATGGAATAGACATGGCAAC 57.117 37.500 0.00 0.00 28.50 4.17
172 173 6.191657 TCATATGGAATAGACATGGCAACT 57.808 37.500 0.00 0.00 30.35 3.16
173 174 6.604171 TCATATGGAATAGACATGGCAACTT 58.396 36.000 0.00 0.00 30.35 2.66
174 175 7.062322 TCATATGGAATAGACATGGCAACTTT 58.938 34.615 0.00 0.00 30.35 2.66
175 176 7.560991 TCATATGGAATAGACATGGCAACTTTT 59.439 33.333 0.00 0.00 30.35 2.27
176 177 8.849168 CATATGGAATAGACATGGCAACTTTTA 58.151 33.333 0.00 0.00 30.35 1.52
177 178 7.716799 ATGGAATAGACATGGCAACTTTTAA 57.283 32.000 0.00 0.00 37.61 1.52
178 179 7.716799 TGGAATAGACATGGCAACTTTTAAT 57.283 32.000 0.00 0.00 37.61 1.40
179 180 7.771183 TGGAATAGACATGGCAACTTTTAATC 58.229 34.615 0.00 0.00 37.61 1.75
180 181 7.147915 TGGAATAGACATGGCAACTTTTAATCC 60.148 37.037 0.00 0.00 37.61 3.01
181 182 7.147915 GGAATAGACATGGCAACTTTTAATCCA 60.148 37.037 0.00 0.00 37.61 3.41
182 183 7.716799 ATAGACATGGCAACTTTTAATCCAA 57.283 32.000 0.00 0.00 37.61 3.53
183 184 6.418057 AGACATGGCAACTTTTAATCCAAA 57.582 33.333 0.00 0.00 37.61 3.28
184 185 6.825610 AGACATGGCAACTTTTAATCCAAAA 58.174 32.000 0.00 0.00 34.89 2.44
185 186 7.278875 AGACATGGCAACTTTTAATCCAAAAA 58.721 30.769 0.00 0.00 35.71 1.94
222 223 9.658799 AATATATCAACATGGGATCTAGTTTCG 57.341 33.333 5.52 0.00 0.00 3.46
223 224 5.614324 ATCAACATGGGATCTAGTTTCGA 57.386 39.130 0.00 0.00 0.00 3.71
224 225 5.414789 TCAACATGGGATCTAGTTTCGAA 57.585 39.130 0.00 0.00 0.00 3.71
225 226 5.419542 TCAACATGGGATCTAGTTTCGAAG 58.580 41.667 0.00 0.00 0.00 3.79
226 227 5.186992 TCAACATGGGATCTAGTTTCGAAGA 59.813 40.000 0.00 0.00 0.00 2.87
227 228 5.878406 ACATGGGATCTAGTTTCGAAGAT 57.122 39.130 0.00 0.00 35.04 2.40
228 229 5.848406 ACATGGGATCTAGTTTCGAAGATC 58.152 41.667 14.01 14.01 44.88 2.75
229 230 5.600484 ACATGGGATCTAGTTTCGAAGATCT 59.400 40.000 19.29 12.50 44.94 2.75
230 231 5.776173 TGGGATCTAGTTTCGAAGATCTC 57.224 43.478 19.29 17.27 45.96 2.75
231 232 5.776173 GGGATCTAGTTTCGAAGATCTCA 57.224 43.478 19.29 0.00 45.36 3.27
232 233 6.339587 GGGATCTAGTTTCGAAGATCTCAT 57.660 41.667 19.29 7.53 45.36 2.90
233 234 6.386654 GGGATCTAGTTTCGAAGATCTCATC 58.613 44.000 19.29 13.26 45.36 2.92
234 235 6.083630 GGATCTAGTTTCGAAGATCTCATCG 58.916 44.000 19.29 10.02 44.94 3.84
235 236 4.849883 TCTAGTTTCGAAGATCTCATCGC 58.150 43.478 11.22 0.00 37.05 4.58
236 237 2.455032 AGTTTCGAAGATCTCATCGCG 58.545 47.619 11.22 0.00 37.05 5.87
237 238 2.097629 AGTTTCGAAGATCTCATCGCGA 59.902 45.455 13.09 13.09 37.05 5.87
238 239 2.391322 TTCGAAGATCTCATCGCGAG 57.609 50.000 16.66 7.11 43.80 5.03
239 240 0.588737 TCGAAGATCTCATCGCGAGG 59.411 55.000 15.81 15.81 42.55 4.63
240 241 0.386605 CGAAGATCTCATCGCGAGGG 60.387 60.000 21.76 12.63 42.55 4.30
241 242 0.955178 GAAGATCTCATCGCGAGGGA 59.045 55.000 21.76 16.72 42.55 4.20
242 243 1.543802 GAAGATCTCATCGCGAGGGAT 59.456 52.381 21.76 20.51 42.55 3.85
243 244 1.626686 AGATCTCATCGCGAGGGATT 58.373 50.000 21.76 5.43 42.55 3.01
244 245 1.967066 AGATCTCATCGCGAGGGATTT 59.033 47.619 21.76 13.93 42.55 2.17
245 246 3.157881 AGATCTCATCGCGAGGGATTTA 58.842 45.455 21.76 0.00 42.55 1.40
246 247 3.574396 AGATCTCATCGCGAGGGATTTAA 59.426 43.478 21.76 0.00 42.55 1.52
247 248 4.221703 AGATCTCATCGCGAGGGATTTAAT 59.778 41.667 21.76 8.75 42.55 1.40
248 249 3.653344 TCTCATCGCGAGGGATTTAATG 58.347 45.455 21.76 7.60 42.55 1.90
249 250 2.738846 CTCATCGCGAGGGATTTAATGG 59.261 50.000 21.76 0.53 38.18 3.16
250 251 2.104111 TCATCGCGAGGGATTTAATGGT 59.896 45.455 21.76 0.00 0.00 3.55
251 252 1.948104 TCGCGAGGGATTTAATGGTG 58.052 50.000 3.71 0.00 0.00 4.17
252 253 1.483004 TCGCGAGGGATTTAATGGTGA 59.517 47.619 3.71 0.00 0.00 4.02
253 254 2.093394 TCGCGAGGGATTTAATGGTGAA 60.093 45.455 3.71 0.00 0.00 3.18
254 255 2.680841 CGCGAGGGATTTAATGGTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
255 256 3.127895 CGCGAGGGATTTAATGGTGAAAA 59.872 43.478 0.00 0.00 0.00 2.29
256 257 4.421058 GCGAGGGATTTAATGGTGAAAAC 58.579 43.478 0.00 0.00 0.00 2.43
257 258 4.658071 CGAGGGATTTAATGGTGAAAACG 58.342 43.478 0.00 0.00 0.00 3.60
258 259 4.438200 CGAGGGATTTAATGGTGAAAACGG 60.438 45.833 0.00 0.00 0.00 4.44
259 260 4.668636 AGGGATTTAATGGTGAAAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
260 261 5.269189 AGGGATTTAATGGTGAAAACGGAT 58.731 37.500 0.00 0.00 0.00 4.18
261 262 5.359860 AGGGATTTAATGGTGAAAACGGATC 59.640 40.000 0.00 0.00 0.00 3.36
262 263 5.359860 GGGATTTAATGGTGAAAACGGATCT 59.640 40.000 0.00 0.00 0.00 2.75
263 264 6.127451 GGGATTTAATGGTGAAAACGGATCTT 60.127 38.462 0.00 0.00 0.00 2.40
264 265 6.972901 GGATTTAATGGTGAAAACGGATCTTC 59.027 38.462 0.00 0.00 0.00 2.87
265 266 6.885952 TTTAATGGTGAAAACGGATCTTCA 57.114 33.333 0.00 0.00 0.00 3.02
266 267 6.885952 TTAATGGTGAAAACGGATCTTCAA 57.114 33.333 0.00 0.00 33.52 2.69
267 268 5.982890 AATGGTGAAAACGGATCTTCAAT 57.017 34.783 0.00 0.00 33.52 2.57
268 269 5.567138 ATGGTGAAAACGGATCTTCAATC 57.433 39.130 0.00 0.00 33.52 2.67
269 270 3.435327 TGGTGAAAACGGATCTTCAATCG 59.565 43.478 0.00 0.00 33.52 3.34
270 271 3.181510 GGTGAAAACGGATCTTCAATCGG 60.182 47.826 0.00 0.00 33.52 4.18
271 272 3.682858 GTGAAAACGGATCTTCAATCGGA 59.317 43.478 0.00 0.00 33.52 4.55
272 273 4.332819 GTGAAAACGGATCTTCAATCGGAT 59.667 41.667 0.00 0.00 33.52 4.18
273 274 4.941263 TGAAAACGGATCTTCAATCGGATT 59.059 37.500 0.00 0.00 0.00 3.01
274 275 5.414454 TGAAAACGGATCTTCAATCGGATTT 59.586 36.000 0.00 1.34 0.00 2.17
275 276 5.897377 AAACGGATCTTCAATCGGATTTT 57.103 34.783 0.00 0.00 0.00 1.82
276 277 5.897377 AACGGATCTTCAATCGGATTTTT 57.103 34.783 0.00 0.00 0.00 1.94
277 278 5.485662 ACGGATCTTCAATCGGATTTTTC 57.514 39.130 0.00 0.00 0.00 2.29
278 279 4.034048 ACGGATCTTCAATCGGATTTTTCG 59.966 41.667 0.00 2.07 0.00 3.46
279 280 4.034048 CGGATCTTCAATCGGATTTTTCGT 59.966 41.667 0.00 0.00 0.00 3.85
280 281 5.447279 CGGATCTTCAATCGGATTTTTCGTT 60.447 40.000 0.00 0.00 0.00 3.85
281 282 6.322491 GGATCTTCAATCGGATTTTTCGTTT 58.678 36.000 0.00 0.00 0.00 3.60
282 283 7.469260 GGATCTTCAATCGGATTTTTCGTTTA 58.531 34.615 0.00 0.00 0.00 2.01
283 284 7.966204 GGATCTTCAATCGGATTTTTCGTTTAA 59.034 33.333 0.00 0.00 0.00 1.52
284 285 8.895932 ATCTTCAATCGGATTTTTCGTTTAAG 57.104 30.769 0.00 0.00 0.00 1.85
285 286 8.090250 TCTTCAATCGGATTTTTCGTTTAAGA 57.910 30.769 0.00 0.00 0.00 2.10
286 287 8.227791 TCTTCAATCGGATTTTTCGTTTAAGAG 58.772 33.333 0.00 0.00 0.00 2.85
287 288 7.661127 TCAATCGGATTTTTCGTTTAAGAGA 57.339 32.000 0.00 0.00 0.00 3.10
288 289 8.263940 TCAATCGGATTTTTCGTTTAAGAGAT 57.736 30.769 0.00 0.00 0.00 2.75
289 290 9.373603 TCAATCGGATTTTTCGTTTAAGAGATA 57.626 29.630 0.00 0.00 0.00 1.98
290 291 9.982291 CAATCGGATTTTTCGTTTAAGAGATAA 57.018 29.630 0.00 0.00 0.00 1.75
293 294 9.815936 TCGGATTTTTCGTTTAAGAGATAAAAC 57.184 29.630 0.00 0.00 35.33 2.43
294 295 9.601971 CGGATTTTTCGTTTAAGAGATAAAACA 57.398 29.630 0.00 0.00 35.33 2.83
325 326 9.685276 AAAAACTGAAAATCCAAAAAGATTCCT 57.315 25.926 0.00 0.00 35.40 3.36
327 328 9.764363 AAACTGAAAATCCAAAAAGATTCCTAC 57.236 29.630 0.00 0.00 35.40 3.18
328 329 8.477419 ACTGAAAATCCAAAAAGATTCCTACA 57.523 30.769 0.00 0.00 35.40 2.74
329 330 9.093458 ACTGAAAATCCAAAAAGATTCCTACAT 57.907 29.630 0.00 0.00 35.40 2.29
330 331 9.362539 CTGAAAATCCAAAAAGATTCCTACATG 57.637 33.333 0.00 0.00 35.40 3.21
331 332 7.818930 TGAAAATCCAAAAAGATTCCTACATGC 59.181 33.333 0.00 0.00 35.40 4.06
332 333 6.855763 AATCCAAAAAGATTCCTACATGCA 57.144 33.333 0.00 0.00 30.51 3.96
333 334 7.427989 AATCCAAAAAGATTCCTACATGCAT 57.572 32.000 0.00 0.00 30.51 3.96
334 335 6.211587 TCCAAAAAGATTCCTACATGCATG 57.788 37.500 25.09 25.09 0.00 4.06
335 336 4.807304 CCAAAAAGATTCCTACATGCATGC 59.193 41.667 26.53 11.82 0.00 4.06
336 337 5.412640 CAAAAAGATTCCTACATGCATGCA 58.587 37.500 26.53 25.04 0.00 3.96
337 338 5.864418 AAAAGATTCCTACATGCATGCAT 57.136 34.783 27.46 27.46 37.08 3.96
347 348 2.711311 GCATGCATGCGATGACGT 59.289 55.556 33.99 0.00 44.67 4.34
348 349 1.653232 GCATGCATGCGATGACGTG 60.653 57.895 33.99 3.92 44.67 4.49
349 350 1.010462 CATGCATGCGATGACGTGG 60.010 57.895 14.93 0.00 41.98 4.94
350 351 2.827051 ATGCATGCGATGACGTGGC 61.827 57.895 14.09 0.00 41.98 5.01
351 352 3.498834 GCATGCGATGACGTGGCA 61.499 61.111 0.00 6.82 45.88 4.92
352 353 3.037992 GCATGCGATGACGTGGCAA 62.038 57.895 8.50 0.00 44.94 4.52
353 354 1.723273 CATGCGATGACGTGGCAAT 59.277 52.632 8.50 0.00 44.94 3.56
354 355 0.316442 CATGCGATGACGTGGCAATC 60.316 55.000 8.50 0.00 44.94 2.67
355 356 0.462581 ATGCGATGACGTGGCAATCT 60.463 50.000 8.50 0.00 44.94 2.40
356 357 1.349627 GCGATGACGTGGCAATCTG 59.650 57.895 0.00 0.00 41.98 2.90
357 358 1.361668 GCGATGACGTGGCAATCTGT 61.362 55.000 0.00 0.00 41.98 3.41
358 359 1.078709 CGATGACGTGGCAATCTGTT 58.921 50.000 0.00 0.00 34.56 3.16
359 360 1.464608 CGATGACGTGGCAATCTGTTT 59.535 47.619 0.00 0.00 34.56 2.83
360 361 2.725759 CGATGACGTGGCAATCTGTTTG 60.726 50.000 0.00 0.00 35.17 2.93
375 376 8.096400 CAATCTGTTTGCATTAAAGACGTATG 57.904 34.615 0.00 0.00 0.00 2.39
376 377 6.176975 TCTGTTTGCATTAAAGACGTATGG 57.823 37.500 0.00 0.00 0.00 2.74
377 378 5.703592 TCTGTTTGCATTAAAGACGTATGGT 59.296 36.000 0.00 0.00 0.00 3.55
378 379 5.694816 TGTTTGCATTAAAGACGTATGGTG 58.305 37.500 0.00 0.00 0.00 4.17
379 380 4.349663 TTGCATTAAAGACGTATGGTGC 57.650 40.909 0.00 0.00 0.00 5.01
380 381 3.339141 TGCATTAAAGACGTATGGTGCA 58.661 40.909 7.61 7.61 38.83 4.57
381 382 3.944650 TGCATTAAAGACGTATGGTGCAT 59.055 39.130 7.61 0.00 36.54 3.96
382 383 4.035091 TGCATTAAAGACGTATGGTGCATC 59.965 41.667 7.61 0.00 36.54 3.91
383 384 4.273480 GCATTAAAGACGTATGGTGCATCT 59.727 41.667 0.00 0.00 0.00 2.90
384 385 5.220854 GCATTAAAGACGTATGGTGCATCTT 60.221 40.000 0.00 0.00 0.00 2.40
385 386 6.422223 CATTAAAGACGTATGGTGCATCTTC 58.578 40.000 0.00 0.00 0.00 2.87
386 387 2.604046 AGACGTATGGTGCATCTTCC 57.396 50.000 0.00 0.00 0.00 3.46
387 388 2.111384 AGACGTATGGTGCATCTTCCT 58.889 47.619 0.00 0.00 0.00 3.36
388 389 2.501723 AGACGTATGGTGCATCTTCCTT 59.498 45.455 0.00 0.00 0.00 3.36
389 390 2.866762 GACGTATGGTGCATCTTCCTTC 59.133 50.000 0.00 0.00 0.00 3.46
390 391 2.213499 CGTATGGTGCATCTTCCTTCC 58.787 52.381 0.00 0.00 0.00 3.46
391 392 2.158900 CGTATGGTGCATCTTCCTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
392 393 2.431954 ATGGTGCATCTTCCTTCCTG 57.568 50.000 0.00 0.00 0.00 3.86
393 394 0.322816 TGGTGCATCTTCCTTCCTGC 60.323 55.000 0.00 0.00 35.21 4.85
394 395 1.034292 GGTGCATCTTCCTTCCTGCC 61.034 60.000 0.00 0.00 33.70 4.85
395 396 0.322816 GTGCATCTTCCTTCCTGCCA 60.323 55.000 0.00 0.00 33.70 4.92
396 397 0.322816 TGCATCTTCCTTCCTGCCAC 60.323 55.000 0.00 0.00 33.70 5.01
397 398 0.322816 GCATCTTCCTTCCTGCCACA 60.323 55.000 0.00 0.00 0.00 4.17
398 399 1.457346 CATCTTCCTTCCTGCCACAC 58.543 55.000 0.00 0.00 0.00 3.82
399 400 0.036010 ATCTTCCTTCCTGCCACACG 60.036 55.000 0.00 0.00 0.00 4.49
400 401 1.071471 CTTCCTTCCTGCCACACGT 59.929 57.895 0.00 0.00 0.00 4.49
401 402 1.227823 TTCCTTCCTGCCACACGTG 60.228 57.895 15.48 15.48 0.00 4.49
402 403 1.978455 TTCCTTCCTGCCACACGTGT 61.978 55.000 17.22 17.22 0.00 4.49
403 404 2.253758 CCTTCCTGCCACACGTGTG 61.254 63.158 36.13 36.13 45.23 3.82
412 413 1.569493 CACACGTGTGGCAGTTAGC 59.431 57.895 35.65 0.00 42.10 3.09
461 462 3.563479 CCTGGCCAGGTTTAGTTTACCAT 60.563 47.826 39.52 0.00 43.61 3.55
463 464 3.181427 TGGCCAGGTTTAGTTTACCATGT 60.181 43.478 0.00 0.00 38.16 3.21
502 503 5.419542 TCTTATCAGTCAAAATCGACCCAG 58.580 41.667 0.00 0.00 36.52 4.45
560 561 2.203029 TACACGGTTTGGTGCGCA 60.203 55.556 5.66 5.66 41.65 6.09
574 575 1.667724 GTGCGCATACTGATTTCTGCT 59.332 47.619 15.91 0.00 32.48 4.24
657 659 0.532640 TCGGGATTGGATGCATGTCG 60.533 55.000 2.46 0.00 0.00 4.35
796 816 0.310854 GCTTGTGCGGTAGCTGTTTT 59.689 50.000 0.00 0.00 45.42 2.43
808 828 4.982295 GGTAGCTGTTTTCGATTTTTGCTT 59.018 37.500 0.00 0.00 0.00 3.91
939 962 1.220206 CGATGGTTGCTCCTGCTCT 59.780 57.895 0.80 0.00 40.48 4.09
1166 1195 2.034879 CAACTTCCGCTGACGCCAT 61.035 57.895 0.00 0.00 38.22 4.40
1253 1354 2.283529 GGAGTGTCGCTCTTCCCCA 61.284 63.158 13.00 0.00 43.62 4.96
1669 1781 1.153667 CGACCTCTCAGGCTGAAGC 60.154 63.158 19.29 5.31 39.63 3.86
1694 1809 1.736645 AATCCTTGTCACGTCGCCG 60.737 57.895 0.00 0.00 40.83 6.46
1754 1869 3.063704 CCTTGCCATCCAGCGCAA 61.064 61.111 11.47 0.00 42.48 4.85
1773 1888 2.253403 AATCGGAGTCTTTCCCCCGC 62.253 60.000 0.00 0.00 43.63 6.13
1882 2015 4.758251 CGGGATGGCGAGCACACA 62.758 66.667 0.00 0.00 0.00 3.72
1957 2092 4.889856 TGCTGTGTCAGTGCGCGT 62.890 61.111 8.43 0.00 33.43 6.01
2043 2189 3.449227 CGACCTGCGAGCCACCTA 61.449 66.667 0.00 0.00 44.57 3.08
2309 2459 7.075121 CAGTTTGATTTCACTGCACGTAATTA 58.925 34.615 0.00 0.00 34.33 1.40
2335 2485 1.683917 CTCTAATGGAGGACAGTCCCG 59.316 57.143 16.72 0.00 37.19 5.14
2355 2505 2.159338 CGATCCTTTTCATGGGCACTTG 60.159 50.000 0.00 0.00 0.00 3.16
2378 2528 4.862574 GTGTGCATGAGTTCGAAGTGTATA 59.137 41.667 10.94 0.00 0.00 1.47
2383 2538 8.074370 GTGCATGAGTTCGAAGTGTATATACTA 58.926 37.037 10.94 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.915871 AACTAAAATTGTCATGATACATGCAC 57.084 30.769 0.00 6.98 0.00 4.57
8 9 8.970020 TGAGCCATAAACTAAAATTGTCATGAT 58.030 29.630 0.00 0.00 0.00 2.45
9 10 8.347004 TGAGCCATAAACTAAAATTGTCATGA 57.653 30.769 0.00 0.00 0.00 3.07
10 11 9.027129 CATGAGCCATAAACTAAAATTGTCATG 57.973 33.333 0.00 0.00 32.85 3.07
11 12 8.970020 TCATGAGCCATAAACTAAAATTGTCAT 58.030 29.630 0.00 0.00 0.00 3.06
12 13 8.243426 GTCATGAGCCATAAACTAAAATTGTCA 58.757 33.333 0.00 0.00 0.00 3.58
13 14 8.243426 TGTCATGAGCCATAAACTAAAATTGTC 58.757 33.333 0.00 0.00 0.00 3.18
14 15 8.121305 TGTCATGAGCCATAAACTAAAATTGT 57.879 30.769 0.00 0.00 0.00 2.71
15 16 8.984891 TTGTCATGAGCCATAAACTAAAATTG 57.015 30.769 0.00 0.00 0.00 2.32
17 18 9.807649 GATTTGTCATGAGCCATAAACTAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
18 19 9.023962 AGATTTGTCATGAGCCATAAACTAAAA 57.976 29.630 0.00 0.00 0.00 1.52
19 20 8.579850 AGATTTGTCATGAGCCATAAACTAAA 57.420 30.769 0.00 0.00 0.00 1.85
20 21 9.330063 CTAGATTTGTCATGAGCCATAAACTAA 57.670 33.333 0.00 0.00 0.00 2.24
21 22 8.486210 ACTAGATTTGTCATGAGCCATAAACTA 58.514 33.333 0.00 0.00 0.00 2.24
22 23 7.341805 ACTAGATTTGTCATGAGCCATAAACT 58.658 34.615 0.00 0.00 0.00 2.66
23 24 7.559590 ACTAGATTTGTCATGAGCCATAAAC 57.440 36.000 0.00 0.00 0.00 2.01
24 25 8.579850 AAACTAGATTTGTCATGAGCCATAAA 57.420 30.769 0.00 0.00 0.00 1.40
25 26 8.049117 AGAAACTAGATTTGTCATGAGCCATAA 58.951 33.333 0.00 0.00 0.00 1.90
26 27 7.568349 AGAAACTAGATTTGTCATGAGCCATA 58.432 34.615 0.00 0.00 0.00 2.74
27 28 6.421485 AGAAACTAGATTTGTCATGAGCCAT 58.579 36.000 0.00 0.00 0.00 4.40
28 29 5.809001 AGAAACTAGATTTGTCATGAGCCA 58.191 37.500 0.00 0.00 0.00 4.75
29 30 6.749923 AAGAAACTAGATTTGTCATGAGCC 57.250 37.500 0.00 0.00 0.00 4.70
34 35 9.190317 GGGGAATTAAGAAACTAGATTTGTCAT 57.810 33.333 0.00 0.00 0.00 3.06
35 36 7.335924 CGGGGAATTAAGAAACTAGATTTGTCA 59.664 37.037 0.00 0.00 0.00 3.58
36 37 7.336176 ACGGGGAATTAAGAAACTAGATTTGTC 59.664 37.037 0.00 0.00 0.00 3.18
37 38 7.173032 ACGGGGAATTAAGAAACTAGATTTGT 58.827 34.615 0.00 0.00 0.00 2.83
38 39 7.625828 ACGGGGAATTAAGAAACTAGATTTG 57.374 36.000 0.00 0.00 0.00 2.32
39 40 8.645814 AAACGGGGAATTAAGAAACTAGATTT 57.354 30.769 0.00 0.00 0.00 2.17
40 41 8.645814 AAAACGGGGAATTAAGAAACTAGATT 57.354 30.769 0.00 0.00 0.00 2.40
41 42 9.916360 ATAAAACGGGGAATTAAGAAACTAGAT 57.084 29.630 0.00 0.00 0.00 1.98
49 50 9.463902 TGACATTTATAAAACGGGGAATTAAGA 57.536 29.630 1.21 0.00 0.00 2.10
53 54 9.780186 TTTTTGACATTTATAAAACGGGGAATT 57.220 25.926 1.21 0.00 0.00 2.17
54 55 9.952030 ATTTTTGACATTTATAAAACGGGGAAT 57.048 25.926 1.21 0.00 0.00 3.01
55 56 9.780186 AATTTTTGACATTTATAAAACGGGGAA 57.220 25.926 1.21 0.00 0.00 3.97
96 97 9.807649 GCCATGATATGTTTCAACTATTTTCTT 57.192 29.630 0.00 0.00 0.00 2.52
97 98 8.970020 TGCCATGATATGTTTCAACTATTTTCT 58.030 29.630 0.00 0.00 0.00 2.52
98 99 9.585099 TTGCCATGATATGTTTCAACTATTTTC 57.415 29.630 0.00 0.00 0.00 2.29
99 100 9.369904 GTTGCCATGATATGTTTCAACTATTTT 57.630 29.630 0.00 0.00 33.89 1.82
100 101 8.752187 AGTTGCCATGATATGTTTCAACTATTT 58.248 29.630 14.11 0.18 39.41 1.40
101 102 8.297470 AGTTGCCATGATATGTTTCAACTATT 57.703 30.769 14.11 0.41 39.41 1.73
102 103 7.886629 AGTTGCCATGATATGTTTCAACTAT 57.113 32.000 14.11 0.00 39.41 2.12
103 104 7.413988 CGAAGTTGCCATGATATGTTTCAACTA 60.414 37.037 15.16 0.00 39.83 2.24
104 105 6.594788 AAGTTGCCATGATATGTTTCAACT 57.405 33.333 0.00 11.79 41.10 3.16
105 106 5.512788 CGAAGTTGCCATGATATGTTTCAAC 59.487 40.000 0.00 0.00 35.38 3.18
106 107 5.392919 CCGAAGTTGCCATGATATGTTTCAA 60.393 40.000 0.00 0.00 0.00 2.69
107 108 4.096231 CCGAAGTTGCCATGATATGTTTCA 59.904 41.667 0.00 0.00 0.00 2.69
108 109 4.096382 ACCGAAGTTGCCATGATATGTTTC 59.904 41.667 0.00 0.00 0.00 2.78
109 110 4.016444 ACCGAAGTTGCCATGATATGTTT 58.984 39.130 0.00 0.00 0.00 2.83
110 111 3.378112 CACCGAAGTTGCCATGATATGTT 59.622 43.478 0.00 0.00 0.00 2.71
111 112 2.945008 CACCGAAGTTGCCATGATATGT 59.055 45.455 0.00 0.00 0.00 2.29
112 113 2.945008 ACACCGAAGTTGCCATGATATG 59.055 45.455 0.00 0.00 0.00 1.78
113 114 3.281727 ACACCGAAGTTGCCATGATAT 57.718 42.857 0.00 0.00 0.00 1.63
114 115 2.779755 ACACCGAAGTTGCCATGATA 57.220 45.000 0.00 0.00 0.00 2.15
115 116 2.779755 TACACCGAAGTTGCCATGAT 57.220 45.000 0.00 0.00 0.00 2.45
116 117 2.550606 GTTTACACCGAAGTTGCCATGA 59.449 45.455 0.00 0.00 0.00 3.07
117 118 2.292016 TGTTTACACCGAAGTTGCCATG 59.708 45.455 0.00 0.00 0.00 3.66
118 119 2.577700 TGTTTACACCGAAGTTGCCAT 58.422 42.857 0.00 0.00 0.00 4.40
119 120 2.039818 TGTTTACACCGAAGTTGCCA 57.960 45.000 0.00 0.00 0.00 4.92
120 121 2.550606 TGATGTTTACACCGAAGTTGCC 59.449 45.455 0.00 0.00 0.00 4.52
121 122 3.889196 TGATGTTTACACCGAAGTTGC 57.111 42.857 0.00 0.00 0.00 4.17
122 123 4.722194 CCATGATGTTTACACCGAAGTTG 58.278 43.478 0.00 0.00 0.00 3.16
123 124 3.190535 GCCATGATGTTTACACCGAAGTT 59.809 43.478 0.00 0.00 0.00 2.66
124 125 2.747446 GCCATGATGTTTACACCGAAGT 59.253 45.455 0.00 0.00 0.00 3.01
125 126 2.746904 TGCCATGATGTTTACACCGAAG 59.253 45.455 0.00 0.00 0.00 3.79
126 127 2.784347 TGCCATGATGTTTACACCGAA 58.216 42.857 0.00 0.00 0.00 4.30
127 128 2.481289 TGCCATGATGTTTACACCGA 57.519 45.000 0.00 0.00 0.00 4.69
128 129 3.781079 ATTGCCATGATGTTTACACCG 57.219 42.857 0.00 0.00 0.00 4.94
129 130 5.070770 TGAATTGCCATGATGTTTACACC 57.929 39.130 0.00 0.00 0.00 4.16
130 131 7.383029 CCATATGAATTGCCATGATGTTTACAC 59.617 37.037 3.65 0.00 0.00 2.90
131 132 7.287235 TCCATATGAATTGCCATGATGTTTACA 59.713 33.333 3.65 0.00 0.00 2.41
132 133 7.660112 TCCATATGAATTGCCATGATGTTTAC 58.340 34.615 3.65 0.00 0.00 2.01
133 134 7.836479 TCCATATGAATTGCCATGATGTTTA 57.164 32.000 3.65 0.00 0.00 2.01
134 135 6.734502 TCCATATGAATTGCCATGATGTTT 57.265 33.333 3.65 0.00 0.00 2.83
135 136 6.734502 TTCCATATGAATTGCCATGATGTT 57.265 33.333 3.65 0.00 0.00 2.71
136 137 6.928348 ATTCCATATGAATTGCCATGATGT 57.072 33.333 3.65 0.00 40.92 3.06
137 138 8.188799 GTCTATTCCATATGAATTGCCATGATG 58.811 37.037 3.65 0.00 40.92 3.07
138 139 7.891712 TGTCTATTCCATATGAATTGCCATGAT 59.108 33.333 3.65 0.00 40.92 2.45
139 140 7.232910 TGTCTATTCCATATGAATTGCCATGA 58.767 34.615 3.65 0.00 40.92 3.07
140 141 7.457024 TGTCTATTCCATATGAATTGCCATG 57.543 36.000 3.65 0.00 40.92 3.66
141 142 7.123697 CCATGTCTATTCCATATGAATTGCCAT 59.876 37.037 3.65 2.94 40.92 4.40
142 143 6.434965 CCATGTCTATTCCATATGAATTGCCA 59.565 38.462 3.65 0.80 40.92 4.92
143 144 6.626623 GCCATGTCTATTCCATATGAATTGCC 60.627 42.308 3.65 0.00 40.92 4.52
144 145 6.071784 TGCCATGTCTATTCCATATGAATTGC 60.072 38.462 3.65 2.12 40.92 3.56
145 146 7.457024 TGCCATGTCTATTCCATATGAATTG 57.543 36.000 3.65 4.08 40.92 2.32
146 147 7.727186 AGTTGCCATGTCTATTCCATATGAATT 59.273 33.333 3.65 0.00 40.92 2.17
147 148 7.236529 AGTTGCCATGTCTATTCCATATGAAT 58.763 34.615 3.65 5.12 45.64 2.57
148 149 6.604171 AGTTGCCATGTCTATTCCATATGAA 58.396 36.000 3.65 0.00 37.38 2.57
149 150 6.191657 AGTTGCCATGTCTATTCCATATGA 57.808 37.500 3.65 0.00 0.00 2.15
150 151 6.889301 AAGTTGCCATGTCTATTCCATATG 57.111 37.500 0.00 0.00 0.00 1.78
151 152 7.902920 AAAAGTTGCCATGTCTATTCCATAT 57.097 32.000 0.00 0.00 0.00 1.78
152 153 8.815565 TTAAAAGTTGCCATGTCTATTCCATA 57.184 30.769 0.00 0.00 0.00 2.74
153 154 7.716799 TTAAAAGTTGCCATGTCTATTCCAT 57.283 32.000 0.00 0.00 0.00 3.41
154 155 7.147915 GGATTAAAAGTTGCCATGTCTATTCCA 60.148 37.037 0.00 0.00 0.00 3.53
155 156 7.147915 TGGATTAAAAGTTGCCATGTCTATTCC 60.148 37.037 0.00 0.00 0.00 3.01
156 157 7.771183 TGGATTAAAAGTTGCCATGTCTATTC 58.229 34.615 0.00 0.00 0.00 1.75
157 158 7.716799 TGGATTAAAAGTTGCCATGTCTATT 57.283 32.000 0.00 0.00 0.00 1.73
158 159 7.716799 TTGGATTAAAAGTTGCCATGTCTAT 57.283 32.000 0.00 0.00 0.00 1.98
159 160 7.531857 TTTGGATTAAAAGTTGCCATGTCTA 57.468 32.000 0.00 0.00 0.00 2.59
160 161 6.418057 TTTGGATTAAAAGTTGCCATGTCT 57.582 33.333 0.00 0.00 0.00 3.41
161 162 7.489574 TTTTTGGATTAAAAGTTGCCATGTC 57.510 32.000 0.00 0.00 39.29 3.06
196 197 9.658799 CGAAACTAGATCCCATGTTGATATATT 57.341 33.333 0.00 0.00 0.00 1.28
197 198 9.035890 TCGAAACTAGATCCCATGTTGATATAT 57.964 33.333 0.00 0.00 0.00 0.86
198 199 8.417273 TCGAAACTAGATCCCATGTTGATATA 57.583 34.615 0.00 0.00 0.00 0.86
199 200 7.303182 TCGAAACTAGATCCCATGTTGATAT 57.697 36.000 0.00 0.00 0.00 1.63
200 201 6.724893 TCGAAACTAGATCCCATGTTGATA 57.275 37.500 0.00 0.00 0.00 2.15
201 202 5.614324 TCGAAACTAGATCCCATGTTGAT 57.386 39.130 0.00 0.00 0.00 2.57
202 203 5.186992 TCTTCGAAACTAGATCCCATGTTGA 59.813 40.000 0.00 0.00 0.00 3.18
203 204 5.419542 TCTTCGAAACTAGATCCCATGTTG 58.580 41.667 0.00 0.00 0.00 3.33
204 205 5.677319 TCTTCGAAACTAGATCCCATGTT 57.323 39.130 0.00 0.00 0.00 2.71
205 206 5.600484 AGATCTTCGAAACTAGATCCCATGT 59.400 40.000 17.33 1.02 45.05 3.21
206 207 6.095432 AGATCTTCGAAACTAGATCCCATG 57.905 41.667 17.33 0.00 45.05 3.66
207 208 5.835819 TGAGATCTTCGAAACTAGATCCCAT 59.164 40.000 17.33 3.79 45.05 4.00
208 209 5.201243 TGAGATCTTCGAAACTAGATCCCA 58.799 41.667 17.33 11.57 45.05 4.37
209 210 5.776173 TGAGATCTTCGAAACTAGATCCC 57.224 43.478 17.33 9.47 45.05 3.85
210 211 6.083630 CGATGAGATCTTCGAAACTAGATCC 58.916 44.000 17.33 11.43 45.05 3.36
211 212 5.567534 GCGATGAGATCTTCGAAACTAGATC 59.432 44.000 18.67 14.39 44.54 2.75
212 213 5.457140 GCGATGAGATCTTCGAAACTAGAT 58.543 41.667 18.67 0.00 43.48 1.98
213 214 4.552961 CGCGATGAGATCTTCGAAACTAGA 60.553 45.833 18.67 0.00 43.48 2.43
214 215 3.661728 CGCGATGAGATCTTCGAAACTAG 59.338 47.826 18.67 0.00 43.48 2.57
215 216 3.311596 TCGCGATGAGATCTTCGAAACTA 59.688 43.478 18.67 0.00 43.48 2.24
216 217 2.097629 TCGCGATGAGATCTTCGAAACT 59.902 45.455 18.67 0.00 43.48 2.66
217 218 2.451132 TCGCGATGAGATCTTCGAAAC 58.549 47.619 18.67 2.75 43.48 2.78
218 219 2.844122 TCGCGATGAGATCTTCGAAA 57.156 45.000 18.67 4.66 43.48 3.46
228 229 2.738846 CCATTAAATCCCTCGCGATGAG 59.261 50.000 10.36 0.80 44.83 2.90
229 230 2.104111 ACCATTAAATCCCTCGCGATGA 59.896 45.455 10.36 10.40 0.00 2.92
230 231 2.224079 CACCATTAAATCCCTCGCGATG 59.776 50.000 10.36 6.89 0.00 3.84
231 232 2.104111 TCACCATTAAATCCCTCGCGAT 59.896 45.455 10.36 0.00 0.00 4.58
232 233 1.483004 TCACCATTAAATCCCTCGCGA 59.517 47.619 9.26 9.26 0.00 5.87
233 234 1.948104 TCACCATTAAATCCCTCGCG 58.052 50.000 0.00 0.00 0.00 5.87
234 235 4.421058 GTTTTCACCATTAAATCCCTCGC 58.579 43.478 0.00 0.00 0.00 5.03
235 236 4.438200 CCGTTTTCACCATTAAATCCCTCG 60.438 45.833 0.00 0.00 0.00 4.63
236 237 4.703093 TCCGTTTTCACCATTAAATCCCTC 59.297 41.667 0.00 0.00 0.00 4.30
237 238 4.668636 TCCGTTTTCACCATTAAATCCCT 58.331 39.130 0.00 0.00 0.00 4.20
238 239 5.359860 AGATCCGTTTTCACCATTAAATCCC 59.640 40.000 0.00 0.00 0.00 3.85
239 240 6.451064 AGATCCGTTTTCACCATTAAATCC 57.549 37.500 0.00 0.00 0.00 3.01
240 241 7.535139 TGAAGATCCGTTTTCACCATTAAATC 58.465 34.615 0.00 0.00 0.00 2.17
241 242 7.461182 TGAAGATCCGTTTTCACCATTAAAT 57.539 32.000 0.00 0.00 0.00 1.40
242 243 6.885952 TGAAGATCCGTTTTCACCATTAAA 57.114 33.333 0.00 0.00 0.00 1.52
243 244 6.885952 TTGAAGATCCGTTTTCACCATTAA 57.114 33.333 0.00 0.00 33.36 1.40
244 245 6.183360 CGATTGAAGATCCGTTTTCACCATTA 60.183 38.462 0.00 0.00 33.36 1.90
245 246 5.391950 CGATTGAAGATCCGTTTTCACCATT 60.392 40.000 0.00 0.00 33.36 3.16
246 247 4.094887 CGATTGAAGATCCGTTTTCACCAT 59.905 41.667 0.00 0.00 33.36 3.55
247 248 3.435327 CGATTGAAGATCCGTTTTCACCA 59.565 43.478 0.00 0.00 33.36 4.17
248 249 3.181510 CCGATTGAAGATCCGTTTTCACC 60.182 47.826 0.00 0.00 33.36 4.02
249 250 3.682858 TCCGATTGAAGATCCGTTTTCAC 59.317 43.478 0.00 0.00 33.36 3.18
250 251 3.932822 TCCGATTGAAGATCCGTTTTCA 58.067 40.909 0.00 0.00 0.00 2.69
251 252 5.485662 AATCCGATTGAAGATCCGTTTTC 57.514 39.130 0.00 0.00 0.00 2.29
252 253 5.897377 AAATCCGATTGAAGATCCGTTTT 57.103 34.783 0.00 0.00 0.00 2.43
253 254 5.897377 AAAATCCGATTGAAGATCCGTTT 57.103 34.783 0.00 0.00 0.00 3.60
254 255 5.447279 CGAAAAATCCGATTGAAGATCCGTT 60.447 40.000 0.00 0.00 0.00 4.44
255 256 4.034048 CGAAAAATCCGATTGAAGATCCGT 59.966 41.667 0.00 0.00 0.00 4.69
256 257 4.034048 ACGAAAAATCCGATTGAAGATCCG 59.966 41.667 0.00 0.00 0.00 4.18
257 258 5.485662 ACGAAAAATCCGATTGAAGATCC 57.514 39.130 0.00 0.00 0.00 3.36
258 259 8.889849 TTAAACGAAAAATCCGATTGAAGATC 57.110 30.769 0.00 0.00 0.00 2.75
259 260 8.726988 TCTTAAACGAAAAATCCGATTGAAGAT 58.273 29.630 0.00 0.00 0.00 2.40
260 261 8.090250 TCTTAAACGAAAAATCCGATTGAAGA 57.910 30.769 0.00 0.00 0.00 2.87
261 262 8.227791 TCTCTTAAACGAAAAATCCGATTGAAG 58.772 33.333 0.00 0.00 0.00 3.02
262 263 8.090250 TCTCTTAAACGAAAAATCCGATTGAA 57.910 30.769 0.00 0.00 0.00 2.69
263 264 7.661127 TCTCTTAAACGAAAAATCCGATTGA 57.339 32.000 0.00 0.00 0.00 2.57
264 265 9.982291 TTATCTCTTAAACGAAAAATCCGATTG 57.018 29.630 0.00 0.00 0.00 2.67
267 268 9.815936 GTTTTATCTCTTAAACGAAAAATCCGA 57.184 29.630 0.00 0.00 29.47 4.55
268 269 9.601971 TGTTTTATCTCTTAAACGAAAAATCCG 57.398 29.630 0.00 0.00 37.12 4.18
299 300 9.685276 AGGAATCTTTTTGGATTTTCAGTTTTT 57.315 25.926 0.00 0.00 36.24 1.94
301 302 9.764363 GTAGGAATCTTTTTGGATTTTCAGTTT 57.236 29.630 0.00 0.00 36.24 2.66
302 303 8.923270 TGTAGGAATCTTTTTGGATTTTCAGTT 58.077 29.630 0.00 0.00 36.24 3.16
303 304 8.477419 TGTAGGAATCTTTTTGGATTTTCAGT 57.523 30.769 0.00 0.00 36.24 3.41
304 305 9.362539 CATGTAGGAATCTTTTTGGATTTTCAG 57.637 33.333 0.00 0.00 36.24 3.02
305 306 7.818930 GCATGTAGGAATCTTTTTGGATTTTCA 59.181 33.333 0.00 0.00 36.24 2.69
306 307 7.818930 TGCATGTAGGAATCTTTTTGGATTTTC 59.181 33.333 0.00 0.00 36.24 2.29
307 308 7.678837 TGCATGTAGGAATCTTTTTGGATTTT 58.321 30.769 0.00 0.00 36.24 1.82
308 309 7.243604 TGCATGTAGGAATCTTTTTGGATTT 57.756 32.000 0.00 0.00 36.24 2.17
309 310 6.855763 TGCATGTAGGAATCTTTTTGGATT 57.144 33.333 0.00 0.00 38.47 3.01
310 311 6.684613 GCATGCATGTAGGAATCTTTTTGGAT 60.685 38.462 26.79 0.00 0.00 3.41
311 312 5.394443 GCATGCATGTAGGAATCTTTTTGGA 60.394 40.000 26.79 0.00 0.00 3.53
312 313 4.807304 GCATGCATGTAGGAATCTTTTTGG 59.193 41.667 26.79 0.00 0.00 3.28
313 314 5.412640 TGCATGCATGTAGGAATCTTTTTG 58.587 37.500 26.79 0.00 0.00 2.44
314 315 5.664294 TGCATGCATGTAGGAATCTTTTT 57.336 34.783 26.79 0.00 0.00 1.94
315 316 5.597806 CATGCATGCATGTAGGAATCTTTT 58.402 37.500 40.30 13.05 46.20 2.27
316 317 5.196341 CATGCATGCATGTAGGAATCTTT 57.804 39.130 40.30 13.48 46.20 2.52
317 318 4.848562 CATGCATGCATGTAGGAATCTT 57.151 40.909 40.30 13.68 46.20 2.40
331 332 1.010462 CCACGTCATCGCATGCATG 60.010 57.895 22.70 22.70 41.18 4.06
332 333 2.827051 GCCACGTCATCGCATGCAT 61.827 57.895 19.57 7.64 41.18 3.96
333 334 3.498834 GCCACGTCATCGCATGCA 61.499 61.111 19.57 5.34 41.18 3.96
334 335 2.327002 ATTGCCACGTCATCGCATGC 62.327 55.000 7.91 7.91 41.18 4.06
335 336 0.316442 GATTGCCACGTCATCGCATG 60.316 55.000 0.00 0.00 41.18 4.06
336 337 0.462581 AGATTGCCACGTCATCGCAT 60.463 50.000 0.00 0.00 41.18 4.73
337 338 1.079197 AGATTGCCACGTCATCGCA 60.079 52.632 0.00 0.00 41.18 5.10
338 339 1.349627 CAGATTGCCACGTCATCGC 59.650 57.895 0.00 0.00 41.18 4.58
339 340 1.078709 AACAGATTGCCACGTCATCG 58.921 50.000 0.00 0.00 43.34 3.84
340 341 2.855180 CAAACAGATTGCCACGTCATC 58.145 47.619 0.00 0.00 31.00 2.92
341 342 2.995466 CAAACAGATTGCCACGTCAT 57.005 45.000 0.00 0.00 31.00 3.06
350 351 7.218773 CCATACGTCTTTAATGCAAACAGATTG 59.781 37.037 0.00 0.00 42.21 2.67
351 352 7.094377 ACCATACGTCTTTAATGCAAACAGATT 60.094 33.333 0.00 0.00 0.00 2.40
352 353 6.374333 ACCATACGTCTTTAATGCAAACAGAT 59.626 34.615 0.00 0.00 0.00 2.90
353 354 5.703592 ACCATACGTCTTTAATGCAAACAGA 59.296 36.000 0.00 0.00 0.00 3.41
354 355 5.794945 CACCATACGTCTTTAATGCAAACAG 59.205 40.000 0.00 0.00 0.00 3.16
355 356 5.694816 CACCATACGTCTTTAATGCAAACA 58.305 37.500 0.00 0.00 0.00 2.83
356 357 4.557301 GCACCATACGTCTTTAATGCAAAC 59.443 41.667 0.00 0.00 0.00 2.93
357 358 4.216472 TGCACCATACGTCTTTAATGCAAA 59.784 37.500 8.97 0.00 38.78 3.68
358 359 3.753797 TGCACCATACGTCTTTAATGCAA 59.246 39.130 8.97 0.00 38.78 4.08
359 360 3.339141 TGCACCATACGTCTTTAATGCA 58.661 40.909 0.00 0.00 39.38 3.96
360 361 4.273480 AGATGCACCATACGTCTTTAATGC 59.727 41.667 0.00 0.00 28.88 3.56
361 362 5.991328 AGATGCACCATACGTCTTTAATG 57.009 39.130 0.00 0.00 28.88 1.90
362 363 5.527582 GGAAGATGCACCATACGTCTTTAAT 59.472 40.000 0.00 0.00 42.12 1.40
363 364 4.873827 GGAAGATGCACCATACGTCTTTAA 59.126 41.667 0.00 0.00 42.12 1.52
364 365 4.161565 AGGAAGATGCACCATACGTCTTTA 59.838 41.667 0.00 0.00 42.12 1.85
365 366 3.055094 AGGAAGATGCACCATACGTCTTT 60.055 43.478 0.00 0.00 42.12 2.52
366 367 2.501723 AGGAAGATGCACCATACGTCTT 59.498 45.455 0.00 0.00 44.17 3.01
367 368 2.111384 AGGAAGATGCACCATACGTCT 58.889 47.619 0.00 0.00 34.86 4.18
368 369 2.604046 AGGAAGATGCACCATACGTC 57.396 50.000 0.00 0.00 0.00 4.34
369 370 2.420129 GGAAGGAAGATGCACCATACGT 60.420 50.000 0.00 0.00 0.00 3.57
370 371 2.158900 AGGAAGGAAGATGCACCATACG 60.159 50.000 0.00 0.00 0.00 3.06
371 372 3.209410 CAGGAAGGAAGATGCACCATAC 58.791 50.000 0.00 0.00 0.00 2.39
372 373 2.421952 GCAGGAAGGAAGATGCACCATA 60.422 50.000 0.00 0.00 38.54 2.74
373 374 1.684248 GCAGGAAGGAAGATGCACCAT 60.684 52.381 0.00 0.00 38.54 3.55
374 375 0.322816 GCAGGAAGGAAGATGCACCA 60.323 55.000 0.00 0.00 38.54 4.17
375 376 1.034292 GGCAGGAAGGAAGATGCACC 61.034 60.000 0.00 0.00 40.46 5.01
376 377 0.322816 TGGCAGGAAGGAAGATGCAC 60.323 55.000 0.00 0.00 40.46 4.57
377 378 0.322816 GTGGCAGGAAGGAAGATGCA 60.323 55.000 0.00 0.00 40.46 3.96
378 379 0.322816 TGTGGCAGGAAGGAAGATGC 60.323 55.000 0.00 0.00 37.95 3.91
379 380 1.457346 GTGTGGCAGGAAGGAAGATG 58.543 55.000 0.00 0.00 0.00 2.90
380 381 0.036010 CGTGTGGCAGGAAGGAAGAT 60.036 55.000 0.00 0.00 0.00 2.40
381 382 1.371183 CGTGTGGCAGGAAGGAAGA 59.629 57.895 0.00 0.00 0.00 2.87
382 383 1.071471 ACGTGTGGCAGGAAGGAAG 59.929 57.895 0.00 0.00 0.00 3.46
383 384 1.227823 CACGTGTGGCAGGAAGGAA 60.228 57.895 7.58 0.00 0.00 3.36
384 385 2.425592 CACGTGTGGCAGGAAGGA 59.574 61.111 7.58 0.00 0.00 3.36
385 386 2.111043 ACACGTGTGGCAGGAAGG 59.889 61.111 22.71 0.00 34.19 3.46
386 387 3.333414 CACACGTGTGGCAGGAAG 58.667 61.111 35.65 12.08 42.10 3.46
394 395 1.569493 GCTAACTGCCACACGTGTG 59.431 57.895 36.13 36.13 45.23 3.82
395 396 1.954146 CGCTAACTGCCACACGTGT 60.954 57.895 17.22 17.22 38.78 4.49
396 397 2.667318 CCGCTAACTGCCACACGTG 61.667 63.158 15.48 15.48 38.78 4.49
397 398 2.357034 CCGCTAACTGCCACACGT 60.357 61.111 0.00 0.00 38.78 4.49
398 399 3.788766 GCCGCTAACTGCCACACG 61.789 66.667 0.00 0.00 38.78 4.49
399 400 3.788766 CGCCGCTAACTGCCACAC 61.789 66.667 0.00 0.00 38.78 3.82
400 401 4.308458 ACGCCGCTAACTGCCACA 62.308 61.111 0.00 0.00 38.78 4.17
401 402 3.488090 GACGCCGCTAACTGCCAC 61.488 66.667 0.00 0.00 38.78 5.01
402 403 4.752879 GGACGCCGCTAACTGCCA 62.753 66.667 0.00 0.00 38.78 4.92
403 404 2.567564 TTAGGACGCCGCTAACTGCC 62.568 60.000 0.00 0.00 38.78 4.85
404 405 0.529992 ATTAGGACGCCGCTAACTGC 60.530 55.000 0.00 0.00 38.57 4.40
405 406 1.859080 GAATTAGGACGCCGCTAACTG 59.141 52.381 0.00 0.00 0.00 3.16
406 407 1.755380 AGAATTAGGACGCCGCTAACT 59.245 47.619 0.00 0.00 0.00 2.24
407 408 2.220479 AGAATTAGGACGCCGCTAAC 57.780 50.000 0.00 0.00 0.00 2.34
408 409 4.389890 TTTAGAATTAGGACGCCGCTAA 57.610 40.909 0.00 0.00 0.00 3.09
409 410 4.595762 ATTTAGAATTAGGACGCCGCTA 57.404 40.909 0.00 0.00 0.00 4.26
410 411 2.973694 TTTAGAATTAGGACGCCGCT 57.026 45.000 0.00 0.00 0.00 5.52
411 412 6.098017 AGTATATTTAGAATTAGGACGCCGC 58.902 40.000 0.00 0.00 0.00 6.53
412 413 9.630098 TTTAGTATATTTAGAATTAGGACGCCG 57.370 33.333 0.00 0.00 0.00 6.46
502 503 3.036084 CACGTGTCGCTCACCCAC 61.036 66.667 7.58 0.00 43.51 4.61
765 781 0.322008 GCACAAGCTGTAGAAGGGCT 60.322 55.000 0.00 0.00 37.91 5.19
796 816 4.320494 GCAGAGAGGAAAAGCAAAAATCGA 60.320 41.667 0.00 0.00 0.00 3.59
808 828 2.317371 AGGAGACAGCAGAGAGGAAA 57.683 50.000 0.00 0.00 0.00 3.13
1085 1113 1.078848 GAGGCAACGCTCCATGTCT 60.079 57.895 0.00 0.00 46.39 3.41
1166 1195 2.363018 CGAGGAGCCAGGGTGAGA 60.363 66.667 0.00 0.00 0.00 3.27
1199 1234 3.359523 CCGTCACGGTCTGGTCGA 61.360 66.667 8.54 0.00 42.73 4.20
1521 1633 1.303398 AGAGCTCAGGTCGTCCGAA 60.303 57.895 17.77 0.00 39.05 4.30
1705 1820 4.754818 GCGAACGCAACGTCGAGC 62.755 66.667 14.26 1.41 39.99 5.03
1706 1821 4.117372 GGCGAACGCAACGTCGAG 62.117 66.667 20.16 0.00 39.99 4.04
1732 1847 2.046023 CTGGATGGCAAGGCGACA 60.046 61.111 0.00 0.00 0.00 4.35
1753 1868 0.252197 CGGGGGAAAGACTCCGATTT 59.748 55.000 0.00 0.00 46.51 2.17
1754 1869 1.905512 CGGGGGAAAGACTCCGATT 59.094 57.895 0.00 0.00 46.51 3.34
1773 1888 4.361827 GTCTCCATGACGACGACG 57.638 61.111 5.58 5.58 45.75 5.12
1785 1900 1.064314 TCTAGCACCTCTCCAGTCTCC 60.064 57.143 0.00 0.00 0.00 3.71
1828 1961 1.303643 GTGGGCAAGGAACAGGAGG 60.304 63.158 0.00 0.00 0.00 4.30
1882 2015 0.474660 AGTGAGGAAGAGGCAACCCT 60.475 55.000 0.00 0.00 46.74 4.34
1935 2070 1.848932 CGCACTGACACAGCAGCAAT 61.849 55.000 13.85 0.00 39.51 3.56
1957 2092 4.357947 GCCACGCAGACCTCACGA 62.358 66.667 0.00 0.00 0.00 4.35
2220 2370 4.941873 AGCAAAATTTACTTCTCCCTACCG 59.058 41.667 0.00 0.00 0.00 4.02
2309 2459 6.418946 GGACTGTCCTCCATTAGAGAAATTT 58.581 40.000 19.53 0.00 46.50 1.82
2330 2480 1.680338 CCCATGAAAAGGATCGGGAC 58.320 55.000 0.00 0.00 35.57 4.46
2335 2485 2.827921 ACAAGTGCCCATGAAAAGGATC 59.172 45.455 0.00 0.00 0.00 3.36
2355 2505 1.867233 ACACTTCGAACTCATGCACAC 59.133 47.619 0.00 0.00 0.00 3.82
2378 2528 1.135139 CATAGCCGCCGCATCTAGTAT 59.865 52.381 0.00 0.00 37.52 2.12
2383 2538 2.029666 GACATAGCCGCCGCATCT 59.970 61.111 0.00 0.00 37.52 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.