Multiple sequence alignment - TraesCS4A01G343800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G343800 chr4A 100.000 4381 0 0 1 4381 623403548 623399168 0.000000e+00 8091.0
1 TraesCS4A01G343800 chr5D 94.172 3329 121 29 1108 4381 545926758 545930068 0.000000e+00 5005.0
2 TraesCS4A01G343800 chr5D 89.706 204 21 0 3053 3256 546012281 546012484 1.210000e-65 261.0
3 TraesCS4A01G343800 chr5D 90.148 203 8 7 925 1116 545926516 545926717 2.020000e-63 254.0
4 TraesCS4A01G343800 chr5D 82.787 122 19 2 4226 4347 542454654 542454773 1.670000e-19 108.0
5 TraesCS4A01G343800 chr5B 92.739 3319 156 33 1113 4378 689066469 689069755 0.000000e+00 4715.0
6 TraesCS4A01G343800 chr5B 92.655 3322 159 34 1113 4381 688976697 688979986 0.000000e+00 4704.0
7 TraesCS4A01G343800 chr5B 89.925 268 24 3 3053 3319 689202565 689202830 4.200000e-90 342.0
8 TraesCS4A01G343800 chr5B 91.457 199 10 4 927 1119 688976472 688976669 2.600000e-67 267.0
9 TraesCS4A01G343800 chr5B 91.457 199 10 4 927 1119 689066244 689066441 2.600000e-67 267.0
10 TraesCS4A01G343800 chr5B 82.787 122 19 2 4226 4347 684165155 684165274 1.670000e-19 108.0
11 TraesCS4A01G343800 chrUn 92.999 2728 126 21 1446 4127 332382113 332384821 0.000000e+00 3919.0
12 TraesCS4A01G343800 chr3B 89.675 707 49 14 926 1625 670738982 670739671 0.000000e+00 880.0
13 TraesCS4A01G343800 chr6B 89.955 667 35 19 926 1582 653582700 653582056 0.000000e+00 832.0
14 TraesCS4A01G343800 chr1D 86.290 620 74 9 1 620 341020153 341019545 0.000000e+00 664.0
15 TraesCS4A01G343800 chr1A 83.287 718 85 19 1 712 440685668 440684980 2.880000e-176 628.0
16 TraesCS4A01G343800 chr1A 84.554 628 80 11 1 620 440672409 440671791 1.350000e-169 606.0
17 TraesCS4A01G343800 chr7D 83.710 620 75 14 1 620 364623073 364623666 2.960000e-156 562.0
18 TraesCS4A01G343800 chr7A 82.222 135 20 2 3454 3584 8785124 8785258 3.580000e-21 113.0
19 TraesCS4A01G343800 chr7A 78.652 178 33 4 4181 4355 691446910 691447085 3.580000e-21 113.0
20 TraesCS4A01G343800 chr6D 88.312 77 9 0 716 792 433642613 433642537 4.670000e-15 93.5
21 TraesCS4A01G343800 chr2B 87.671 73 7 1 716 788 385194459 385194529 2.810000e-12 84.2
22 TraesCS4A01G343800 chr2B 85.185 81 9 3 716 795 608226816 608226894 3.630000e-11 80.5
23 TraesCS4A01G343800 chr7B 86.301 73 10 0 716 788 728204054 728203982 3.630000e-11 80.5
24 TraesCS4A01G343800 chr7B 86.301 73 7 2 716 788 591948811 591948742 4.700000e-10 76.8
25 TraesCS4A01G343800 chr7B 84.507 71 9 1 718 788 184350910 184350978 7.860000e-08 69.4
26 TraesCS4A01G343800 chr3A 86.301 73 8 1 716 788 81463144 81463214 1.310000e-10 78.7
27 TraesCS4A01G343800 chr2A 86.301 73 8 1 716 788 416924029 416923959 1.310000e-10 78.7
28 TraesCS4A01G343800 chr2A 84.000 75 10 2 716 789 80265373 80265446 2.190000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G343800 chr4A 623399168 623403548 4380 True 8091.0 8091 100.000 1 4381 1 chr4A.!!$R1 4380
1 TraesCS4A01G343800 chr5D 545926516 545930068 3552 False 2629.5 5005 92.160 925 4381 2 chr5D.!!$F3 3456
2 TraesCS4A01G343800 chr5B 689066244 689069755 3511 False 2491.0 4715 92.098 927 4378 2 chr5B.!!$F4 3451
3 TraesCS4A01G343800 chr5B 688976472 688979986 3514 False 2485.5 4704 92.056 927 4381 2 chr5B.!!$F3 3454
4 TraesCS4A01G343800 chrUn 332382113 332384821 2708 False 3919.0 3919 92.999 1446 4127 1 chrUn.!!$F1 2681
5 TraesCS4A01G343800 chr3B 670738982 670739671 689 False 880.0 880 89.675 926 1625 1 chr3B.!!$F1 699
6 TraesCS4A01G343800 chr6B 653582056 653582700 644 True 832.0 832 89.955 926 1582 1 chr6B.!!$R1 656
7 TraesCS4A01G343800 chr1D 341019545 341020153 608 True 664.0 664 86.290 1 620 1 chr1D.!!$R1 619
8 TraesCS4A01G343800 chr1A 440684980 440685668 688 True 628.0 628 83.287 1 712 1 chr1A.!!$R2 711
9 TraesCS4A01G343800 chr1A 440671791 440672409 618 True 606.0 606 84.554 1 620 1 chr1A.!!$R1 619
10 TraesCS4A01G343800 chr7D 364623073 364623666 593 False 562.0 562 83.710 1 620 1 chr7D.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 532 0.034198 TTGTCGCCAGTTCCGAATCA 59.966 50.0 0.00 0.00 36.36 2.57 F
917 922 0.036858 GGAGGGTTGTGCAGAGAGTC 60.037 60.0 0.00 0.00 0.00 3.36 F
1414 1482 0.376852 GATTAATTCTGTGCGCGCCA 59.623 50.0 30.77 23.84 0.00 5.69 F
2049 2142 0.590195 GGCTGCAGATTATTGAGCCG 59.410 55.0 20.43 0.00 39.91 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 1461 0.167908 CTTGGCGCGCACAGAATTAA 59.832 50.000 34.42 10.86 0.00 1.40 R
2911 3021 0.556747 ACCCCCTCGTAGATGTAGCT 59.443 55.000 0.00 0.00 33.89 3.32 R
3050 3161 1.338200 ACTGGTTCTCGGACATGAAGC 60.338 52.381 0.00 0.00 40.02 3.86 R
3815 3941 1.380302 CTGTTTCTCCTGGTGGGGG 59.620 63.158 0.00 0.00 36.75 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 6.912591 GTGCATATGGAAACTTAGAAATTCCG 59.087 38.462 4.56 0.00 44.48 4.30
111 112 9.846248 GTTATCTTTAACAATGCCATATGGATC 57.154 33.333 26.47 9.18 38.07 3.36
120 121 4.776435 TGCCATATGGATCTCTGTCAAA 57.224 40.909 26.47 0.00 37.39 2.69
134 135 5.073144 TCTCTGTCAAACAGGTTTTAGGGAT 59.927 40.000 7.21 0.00 45.94 3.85
139 140 5.476945 GTCAAACAGGTTTTAGGGATGATGT 59.523 40.000 0.00 0.00 0.00 3.06
158 159 5.471116 TGATGTTGAGTTTGACCAAGATCTG 59.529 40.000 0.00 0.00 41.10 2.90
186 187 0.395312 TGGTCCCGAAACAGGAGAAC 59.605 55.000 0.00 0.00 32.84 3.01
192 193 1.529865 CCGAAACAGGAGAACGAAACC 59.470 52.381 0.00 0.00 0.00 3.27
195 196 4.053295 CGAAACAGGAGAACGAAACCTTA 58.947 43.478 0.00 0.00 31.06 2.69
200 201 1.904537 GGAGAACGAAACCTTAGGGGA 59.095 52.381 2.32 0.00 38.76 4.81
219 220 5.609708 AGGGGACTTCTTGAGGTACTTAAAA 59.390 40.000 0.00 0.00 35.75 1.52
221 222 6.239800 GGGGACTTCTTGAGGTACTTAAAAGA 60.240 42.308 0.00 0.00 41.55 2.52
222 223 6.874664 GGGACTTCTTGAGGTACTTAAAAGAG 59.125 42.308 0.00 0.00 41.55 2.85
223 224 7.256225 GGGACTTCTTGAGGTACTTAAAAGAGA 60.256 40.741 0.00 0.00 41.55 3.10
236 237 0.868406 AAAGAGAAAGTGAAGGCGCG 59.132 50.000 0.00 0.00 0.00 6.86
250 251 1.429148 GGCGCGTCTAACCATCAAGG 61.429 60.000 8.43 0.00 45.67 3.61
261 262 1.001764 CATCAAGGGTGGCTGAGCA 60.002 57.895 6.82 0.00 0.00 4.26
263 264 1.203441 ATCAAGGGTGGCTGAGCAGA 61.203 55.000 6.82 0.00 0.00 4.26
272 273 1.155042 GGCTGAGCAGAGACAAGTTG 58.845 55.000 6.82 0.00 0.00 3.16
273 274 1.542108 GGCTGAGCAGAGACAAGTTGT 60.542 52.381 8.61 8.61 0.00 3.32
274 275 1.530293 GCTGAGCAGAGACAAGTTGTG 59.470 52.381 14.57 0.00 0.00 3.33
277 278 2.149578 GAGCAGAGACAAGTTGTGCAT 58.850 47.619 14.57 0.00 36.57 3.96
302 303 3.483869 AGGGATTCAGAGCCGGGC 61.484 66.667 12.11 12.11 29.87 6.13
327 328 1.956477 GCACATCCACTCCAAACAAGT 59.044 47.619 0.00 0.00 0.00 3.16
333 334 3.096092 TCCACTCCAAACAAGTTTGCTT 58.904 40.909 17.82 3.80 46.25 3.91
352 353 3.118884 GCTTTGAATGCTGGGATGTTCAT 60.119 43.478 0.00 0.00 31.39 2.57
380 385 1.300931 GGTGCTTCAGCTGACGTGA 60.301 57.895 18.03 0.00 42.66 4.35
383 388 0.605083 TGCTTCAGCTGACGTGATCT 59.395 50.000 18.03 0.00 42.66 2.75
396 401 1.446907 GTGATCTCCACAACCAGCTG 58.553 55.000 6.78 6.78 45.03 4.24
421 426 2.927856 TCCGCTGAAGGCCAGGAA 60.928 61.111 5.01 0.00 43.13 3.36
436 441 4.703379 CCAGGAAGGCTCTCAATATCTT 57.297 45.455 0.00 0.00 0.00 2.40
437 442 5.046288 CCAGGAAGGCTCTCAATATCTTT 57.954 43.478 0.00 0.00 0.00 2.52
438 443 4.820716 CCAGGAAGGCTCTCAATATCTTTG 59.179 45.833 0.00 0.00 0.00 2.77
439 444 5.397221 CCAGGAAGGCTCTCAATATCTTTGA 60.397 44.000 0.00 0.00 0.00 2.69
440 445 5.759273 CAGGAAGGCTCTCAATATCTTTGAG 59.241 44.000 8.67 8.67 45.38 3.02
441 446 5.428131 AGGAAGGCTCTCAATATCTTTGAGT 59.572 40.000 13.38 0.00 44.58 3.41
442 447 6.069731 AGGAAGGCTCTCAATATCTTTGAGTT 60.070 38.462 13.38 2.91 44.58 3.01
443 448 6.038050 GGAAGGCTCTCAATATCTTTGAGTTG 59.962 42.308 13.38 9.64 44.58 3.16
444 449 6.059787 AGGCTCTCAATATCTTTGAGTTGT 57.940 37.500 13.38 0.00 44.58 3.32
445 450 6.479884 AGGCTCTCAATATCTTTGAGTTGTT 58.520 36.000 13.38 0.00 44.58 2.83
446 451 6.597280 AGGCTCTCAATATCTTTGAGTTGTTC 59.403 38.462 13.38 6.77 44.58 3.18
447 452 6.597280 GGCTCTCAATATCTTTGAGTTGTTCT 59.403 38.462 13.38 0.00 44.58 3.01
448 453 7.120432 GGCTCTCAATATCTTTGAGTTGTTCTT 59.880 37.037 13.38 0.00 44.58 2.52
449 454 8.174422 GCTCTCAATATCTTTGAGTTGTTCTTC 58.826 37.037 13.38 0.00 44.58 2.87
450 455 9.212641 CTCTCAATATCTTTGAGTTGTTCTTCA 57.787 33.333 13.38 0.00 44.58 3.02
451 456 8.993121 TCTCAATATCTTTGAGTTGTTCTTCAC 58.007 33.333 13.38 0.00 44.58 3.18
452 457 8.099364 TCAATATCTTTGAGTTGTTCTTCACC 57.901 34.615 0.00 0.00 0.00 4.02
453 458 7.939039 TCAATATCTTTGAGTTGTTCTTCACCT 59.061 33.333 0.00 0.00 0.00 4.00
454 459 9.219603 CAATATCTTTGAGTTGTTCTTCACCTA 57.780 33.333 0.00 0.00 0.00 3.08
455 460 9.793259 AATATCTTTGAGTTGTTCTTCACCTAA 57.207 29.630 0.00 0.00 0.00 2.69
456 461 9.965902 ATATCTTTGAGTTGTTCTTCACCTAAT 57.034 29.630 0.00 0.00 0.00 1.73
457 462 7.496529 TCTTTGAGTTGTTCTTCACCTAATG 57.503 36.000 0.00 0.00 0.00 1.90
458 463 7.054124 TCTTTGAGTTGTTCTTCACCTAATGT 58.946 34.615 0.00 0.00 0.00 2.71
459 464 6.618287 TTGAGTTGTTCTTCACCTAATGTG 57.382 37.500 0.00 0.00 46.88 3.21
460 465 5.063204 TGAGTTGTTCTTCACCTAATGTGG 58.937 41.667 0.00 0.00 45.48 4.17
461 466 4.398319 AGTTGTTCTTCACCTAATGTGGG 58.602 43.478 0.00 0.00 45.48 4.61
462 467 4.104102 AGTTGTTCTTCACCTAATGTGGGA 59.896 41.667 0.00 0.00 45.48 4.37
463 468 4.015872 TGTTCTTCACCTAATGTGGGAC 57.984 45.455 0.00 0.00 45.48 4.46
464 469 3.650942 TGTTCTTCACCTAATGTGGGACT 59.349 43.478 0.00 0.00 45.48 3.85
465 470 4.254492 GTTCTTCACCTAATGTGGGACTC 58.746 47.826 0.00 0.00 45.48 3.36
466 471 2.838202 TCTTCACCTAATGTGGGACTCC 59.162 50.000 0.00 0.00 45.48 3.85
467 472 1.580059 TCACCTAATGTGGGACTCCC 58.420 55.000 7.25 7.25 45.48 4.30
514 519 7.684062 ATAATGATGCAATAAACTTTGTCGC 57.316 32.000 0.00 0.00 0.00 5.19
515 520 3.832276 TGATGCAATAAACTTTGTCGCC 58.168 40.909 0.00 0.00 0.00 5.54
516 521 3.254411 TGATGCAATAAACTTTGTCGCCA 59.746 39.130 0.00 0.00 0.00 5.69
517 522 3.281341 TGCAATAAACTTTGTCGCCAG 57.719 42.857 0.00 0.00 0.00 4.85
518 523 2.621055 TGCAATAAACTTTGTCGCCAGT 59.379 40.909 0.00 0.00 0.00 4.00
519 524 3.067461 TGCAATAAACTTTGTCGCCAGTT 59.933 39.130 0.00 0.00 34.58 3.16
520 525 3.668656 GCAATAAACTTTGTCGCCAGTTC 59.331 43.478 0.00 0.00 31.79 3.01
521 526 4.226761 CAATAAACTTTGTCGCCAGTTCC 58.773 43.478 0.00 0.00 31.79 3.62
522 527 0.661020 AAACTTTGTCGCCAGTTCCG 59.339 50.000 0.00 0.00 31.79 4.30
523 528 0.179067 AACTTTGTCGCCAGTTCCGA 60.179 50.000 0.00 0.00 0.00 4.55
524 529 0.179067 ACTTTGTCGCCAGTTCCGAA 60.179 50.000 0.00 0.00 36.36 4.30
525 530 1.156736 CTTTGTCGCCAGTTCCGAAT 58.843 50.000 0.00 0.00 36.36 3.34
526 531 1.128692 CTTTGTCGCCAGTTCCGAATC 59.871 52.381 0.00 0.00 36.36 2.52
527 532 0.034198 TTGTCGCCAGTTCCGAATCA 59.966 50.000 0.00 0.00 36.36 2.57
528 533 0.249120 TGTCGCCAGTTCCGAATCAT 59.751 50.000 0.00 0.00 36.36 2.45
529 534 0.652592 GTCGCCAGTTCCGAATCATG 59.347 55.000 0.00 0.00 36.36 3.07
530 535 0.461870 TCGCCAGTTCCGAATCATGG 60.462 55.000 0.00 5.89 0.00 3.66
531 536 0.744414 CGCCAGTTCCGAATCATGGT 60.744 55.000 10.15 0.00 33.42 3.55
532 537 1.463674 GCCAGTTCCGAATCATGGTT 58.536 50.000 0.00 0.00 33.42 3.67
533 538 1.818674 GCCAGTTCCGAATCATGGTTT 59.181 47.619 0.00 0.00 33.42 3.27
534 539 3.013921 GCCAGTTCCGAATCATGGTTTA 58.986 45.455 0.00 0.00 33.42 2.01
535 540 3.632145 GCCAGTTCCGAATCATGGTTTAT 59.368 43.478 0.00 0.00 33.42 1.40
536 541 4.097892 GCCAGTTCCGAATCATGGTTTATT 59.902 41.667 0.00 0.00 33.42 1.40
537 542 5.581605 CCAGTTCCGAATCATGGTTTATTG 58.418 41.667 0.00 0.00 0.00 1.90
538 543 5.125417 CCAGTTCCGAATCATGGTTTATTGT 59.875 40.000 0.00 0.00 0.00 2.71
539 544 6.317642 CCAGTTCCGAATCATGGTTTATTGTA 59.682 38.462 0.00 0.00 0.00 2.41
540 545 7.148154 CCAGTTCCGAATCATGGTTTATTGTAA 60.148 37.037 0.00 0.00 0.00 2.41
541 546 8.240682 CAGTTCCGAATCATGGTTTATTGTAAA 58.759 33.333 0.00 0.00 0.00 2.01
542 547 8.798402 AGTTCCGAATCATGGTTTATTGTAAAA 58.202 29.630 0.00 0.00 0.00 1.52
543 548 9.581099 GTTCCGAATCATGGTTTATTGTAAAAT 57.419 29.630 0.00 0.00 0.00 1.82
544 549 9.579768 TTCCGAATCATGGTTTATTGTAAAATG 57.420 29.630 0.00 0.00 0.00 2.32
545 550 8.744652 TCCGAATCATGGTTTATTGTAAAATGT 58.255 29.630 0.00 0.00 0.00 2.71
546 551 9.364989 CCGAATCATGGTTTATTGTAAAATGTT 57.635 29.630 0.00 0.00 0.00 2.71
554 559 9.619316 TGGTTTATTGTAAAATGTTTGATCTCG 57.381 29.630 0.00 0.00 0.00 4.04
555 560 9.620660 GGTTTATTGTAAAATGTTTGATCTCGT 57.379 29.630 0.00 0.00 0.00 4.18
561 566 8.181487 TGTAAAATGTTTGATCTCGTAGTAGC 57.819 34.615 0.00 0.00 0.00 3.58
562 567 8.033038 TGTAAAATGTTTGATCTCGTAGTAGCT 58.967 33.333 0.00 0.00 0.00 3.32
563 568 7.527084 AAAATGTTTGATCTCGTAGTAGCTC 57.473 36.000 0.00 0.00 0.00 4.09
564 569 6.458232 AATGTTTGATCTCGTAGTAGCTCT 57.542 37.500 0.00 0.00 0.00 4.09
565 570 5.487153 TGTTTGATCTCGTAGTAGCTCTC 57.513 43.478 0.00 0.00 0.00 3.20
566 571 5.186942 TGTTTGATCTCGTAGTAGCTCTCT 58.813 41.667 0.00 0.00 0.00 3.10
567 572 5.065346 TGTTTGATCTCGTAGTAGCTCTCTG 59.935 44.000 0.00 0.00 0.00 3.35
568 573 3.734463 TGATCTCGTAGTAGCTCTCTGG 58.266 50.000 0.00 0.00 0.00 3.86
569 574 3.134985 TGATCTCGTAGTAGCTCTCTGGT 59.865 47.826 0.00 0.00 0.00 4.00
570 575 4.344390 TGATCTCGTAGTAGCTCTCTGGTA 59.656 45.833 0.00 0.00 0.00 3.25
571 576 4.325028 TCTCGTAGTAGCTCTCTGGTAG 57.675 50.000 0.00 0.00 0.00 3.18
572 577 2.803956 CTCGTAGTAGCTCTCTGGTAGC 59.196 54.545 0.00 0.00 40.40 3.58
579 584 2.751166 GCTCTCTGGTAGCTTTGTGA 57.249 50.000 0.00 0.00 37.01 3.58
580 585 2.342179 GCTCTCTGGTAGCTTTGTGAC 58.658 52.381 0.00 0.00 37.01 3.67
581 586 2.289072 GCTCTCTGGTAGCTTTGTGACA 60.289 50.000 0.00 0.00 37.01 3.58
582 587 3.583806 CTCTCTGGTAGCTTTGTGACAG 58.416 50.000 0.00 0.00 0.00 3.51
583 588 2.300152 TCTCTGGTAGCTTTGTGACAGG 59.700 50.000 0.00 0.00 0.00 4.00
584 589 2.300152 CTCTGGTAGCTTTGTGACAGGA 59.700 50.000 0.00 0.00 0.00 3.86
585 590 2.703536 TCTGGTAGCTTTGTGACAGGAA 59.296 45.455 0.00 0.00 0.00 3.36
586 591 3.135712 TCTGGTAGCTTTGTGACAGGAAA 59.864 43.478 0.00 0.00 0.00 3.13
587 592 3.882888 CTGGTAGCTTTGTGACAGGAAAA 59.117 43.478 0.00 0.00 0.00 2.29
588 593 3.882888 TGGTAGCTTTGTGACAGGAAAAG 59.117 43.478 0.00 0.00 34.68 2.27
589 594 3.253432 GGTAGCTTTGTGACAGGAAAAGG 59.747 47.826 0.00 0.00 32.66 3.11
590 595 3.018423 AGCTTTGTGACAGGAAAAGGT 57.982 42.857 4.78 4.78 36.94 3.50
591 596 2.952310 AGCTTTGTGACAGGAAAAGGTC 59.048 45.455 4.78 0.00 37.10 3.85
592 597 2.952310 GCTTTGTGACAGGAAAAGGTCT 59.048 45.455 7.11 0.00 35.11 3.85
593 598 4.134563 GCTTTGTGACAGGAAAAGGTCTA 58.865 43.478 7.11 0.00 35.11 2.59
594 599 4.214332 GCTTTGTGACAGGAAAAGGTCTAG 59.786 45.833 7.11 0.00 35.11 2.43
595 600 3.402628 TGTGACAGGAAAAGGTCTAGC 57.597 47.619 0.00 0.00 35.11 3.42
596 601 2.972713 TGTGACAGGAAAAGGTCTAGCT 59.027 45.455 0.00 0.00 35.11 3.32
597 602 3.391296 TGTGACAGGAAAAGGTCTAGCTT 59.609 43.478 0.00 0.00 35.11 3.74
598 603 4.141482 TGTGACAGGAAAAGGTCTAGCTTT 60.141 41.667 0.00 1.41 35.11 3.51
599 604 4.822350 GTGACAGGAAAAGGTCTAGCTTTT 59.178 41.667 17.23 17.23 35.73 2.27
600 605 5.299531 GTGACAGGAAAAGGTCTAGCTTTTT 59.700 40.000 18.01 7.73 38.78 1.94
645 650 6.589830 TTTTTCAGCGATCTTGCTACTATC 57.410 37.500 0.00 0.00 45.23 2.08
646 651 5.521906 TTTCAGCGATCTTGCTACTATCT 57.478 39.130 0.00 0.00 45.23 1.98
647 652 4.495911 TCAGCGATCTTGCTACTATCTG 57.504 45.455 0.00 0.00 45.23 2.90
648 653 4.137543 TCAGCGATCTTGCTACTATCTGA 58.862 43.478 0.00 0.00 45.23 3.27
649 654 4.580580 TCAGCGATCTTGCTACTATCTGAA 59.419 41.667 0.00 0.00 45.23 3.02
650 655 4.679197 CAGCGATCTTGCTACTATCTGAAC 59.321 45.833 0.00 0.00 45.23 3.18
651 656 4.339530 AGCGATCTTGCTACTATCTGAACA 59.660 41.667 0.00 0.00 45.14 3.18
652 657 5.010516 AGCGATCTTGCTACTATCTGAACAT 59.989 40.000 0.00 0.00 45.14 2.71
653 658 5.118357 GCGATCTTGCTACTATCTGAACATG 59.882 44.000 0.00 0.00 0.00 3.21
654 659 6.212235 CGATCTTGCTACTATCTGAACATGT 58.788 40.000 0.00 0.00 0.00 3.21
655 660 6.143598 CGATCTTGCTACTATCTGAACATGTG 59.856 42.308 0.00 0.00 0.00 3.21
656 661 5.664457 TCTTGCTACTATCTGAACATGTGG 58.336 41.667 0.00 0.00 0.00 4.17
657 662 5.187772 TCTTGCTACTATCTGAACATGTGGT 59.812 40.000 0.00 0.00 0.00 4.16
658 663 5.420725 TGCTACTATCTGAACATGTGGTT 57.579 39.130 0.00 0.00 44.10 3.67
659 664 5.804639 TGCTACTATCTGAACATGTGGTTT 58.195 37.500 0.00 0.00 40.63 3.27
660 665 5.874810 TGCTACTATCTGAACATGTGGTTTC 59.125 40.000 0.00 0.00 40.63 2.78
661 666 5.005779 GCTACTATCTGAACATGTGGTTTCG 59.994 44.000 0.00 0.00 40.63 3.46
662 667 4.894784 ACTATCTGAACATGTGGTTTCGT 58.105 39.130 0.00 0.00 40.63 3.85
663 668 5.305585 ACTATCTGAACATGTGGTTTCGTT 58.694 37.500 0.00 0.00 40.63 3.85
664 669 6.460781 ACTATCTGAACATGTGGTTTCGTTA 58.539 36.000 0.00 0.00 40.63 3.18
665 670 7.103641 ACTATCTGAACATGTGGTTTCGTTAT 58.896 34.615 0.00 0.00 40.63 1.89
666 671 8.255206 ACTATCTGAACATGTGGTTTCGTTATA 58.745 33.333 0.00 0.00 40.63 0.98
667 672 9.261180 CTATCTGAACATGTGGTTTCGTTATAT 57.739 33.333 0.00 0.00 40.63 0.86
668 673 7.915293 TCTGAACATGTGGTTTCGTTATATT 57.085 32.000 0.00 0.00 40.63 1.28
669 674 7.970384 TCTGAACATGTGGTTTCGTTATATTC 58.030 34.615 0.00 0.00 40.63 1.75
670 675 7.604545 TCTGAACATGTGGTTTCGTTATATTCA 59.395 33.333 0.00 0.00 40.63 2.57
671 676 8.100508 TGAACATGTGGTTTCGTTATATTCAA 57.899 30.769 0.00 0.00 40.63 2.69
672 677 8.735315 TGAACATGTGGTTTCGTTATATTCAAT 58.265 29.630 0.00 0.00 40.63 2.57
684 689 9.952030 TTCGTTATATTCAATATAATGGAGCCA 57.048 29.630 21.68 6.58 41.64 4.75
685 690 9.952030 TCGTTATATTCAATATAATGGAGCCAA 57.048 29.630 21.68 6.04 41.64 4.52
690 695 7.951347 ATTCAATATAATGGAGCCAAGGATC 57.049 36.000 0.00 0.00 0.00 3.36
691 696 5.491070 TCAATATAATGGAGCCAAGGATCG 58.509 41.667 0.00 0.00 0.00 3.69
692 697 5.248248 TCAATATAATGGAGCCAAGGATCGA 59.752 40.000 0.00 0.00 0.00 3.59
693 698 3.692257 ATAATGGAGCCAAGGATCGAG 57.308 47.619 0.00 0.00 0.00 4.04
694 699 1.207791 AATGGAGCCAAGGATCGAGT 58.792 50.000 0.00 0.00 0.00 4.18
695 700 0.755686 ATGGAGCCAAGGATCGAGTC 59.244 55.000 0.00 0.00 0.00 3.36
706 711 3.908643 GGATCGAGTCCCTTTTTACCT 57.091 47.619 0.00 0.00 41.50 3.08
708 713 5.349061 GGATCGAGTCCCTTTTTACCTAA 57.651 43.478 0.00 0.00 41.50 2.69
709 714 5.737860 GGATCGAGTCCCTTTTTACCTAAA 58.262 41.667 0.00 0.00 41.50 1.85
710 715 6.175471 GGATCGAGTCCCTTTTTACCTAAAA 58.825 40.000 0.00 0.00 41.50 1.52
711 716 6.656270 GGATCGAGTCCCTTTTTACCTAAAAA 59.344 38.462 0.00 3.55 41.50 1.94
725 730 8.880878 TTTACCTAAAAAGAAACTCATTTGGC 57.119 30.769 0.00 0.00 0.00 4.52
726 731 6.731292 ACCTAAAAAGAAACTCATTTGGCT 57.269 33.333 0.00 0.00 0.00 4.75
727 732 6.749139 ACCTAAAAAGAAACTCATTTGGCTC 58.251 36.000 0.00 0.00 0.00 4.70
728 733 6.159293 CCTAAAAAGAAACTCATTTGGCTCC 58.841 40.000 0.00 0.00 0.00 4.70
729 734 3.923017 AAAGAAACTCATTTGGCTCCG 57.077 42.857 0.00 0.00 0.00 4.63
730 735 2.568623 AGAAACTCATTTGGCTCCGT 57.431 45.000 0.00 0.00 0.00 4.69
731 736 3.695830 AGAAACTCATTTGGCTCCGTA 57.304 42.857 0.00 0.00 0.00 4.02
732 737 4.222124 AGAAACTCATTTGGCTCCGTAT 57.778 40.909 0.00 0.00 0.00 3.06
733 738 5.353394 AGAAACTCATTTGGCTCCGTATA 57.647 39.130 0.00 0.00 0.00 1.47
734 739 5.930135 AGAAACTCATTTGGCTCCGTATAT 58.070 37.500 0.00 0.00 0.00 0.86
735 740 7.062749 AGAAACTCATTTGGCTCCGTATATA 57.937 36.000 0.00 0.00 0.00 0.86
736 741 7.155328 AGAAACTCATTTGGCTCCGTATATAG 58.845 38.462 0.00 0.00 0.00 1.31
737 742 6.420913 AACTCATTTGGCTCCGTATATAGT 57.579 37.500 0.00 0.00 0.00 2.12
738 743 6.420913 ACTCATTTGGCTCCGTATATAGTT 57.579 37.500 0.00 0.00 0.00 2.24
739 744 6.827727 ACTCATTTGGCTCCGTATATAGTTT 58.172 36.000 0.00 0.00 0.00 2.66
740 745 7.959175 ACTCATTTGGCTCCGTATATAGTTTA 58.041 34.615 0.00 0.00 0.00 2.01
741 746 8.594550 ACTCATTTGGCTCCGTATATAGTTTAT 58.405 33.333 0.00 0.00 0.00 1.40
782 787 8.494016 AAAAGACTTATGTTTAGGAATCGAGG 57.506 34.615 0.00 0.00 0.00 4.63
783 788 7.419711 AAGACTTATGTTTAGGAATCGAGGA 57.580 36.000 0.00 0.00 0.00 3.71
784 789 7.419711 AGACTTATGTTTAGGAATCGAGGAA 57.580 36.000 0.00 0.00 0.00 3.36
785 790 7.493367 AGACTTATGTTTAGGAATCGAGGAAG 58.507 38.462 0.00 0.00 0.00 3.46
786 791 7.124448 AGACTTATGTTTAGGAATCGAGGAAGT 59.876 37.037 0.00 0.00 0.00 3.01
787 792 8.302515 ACTTATGTTTAGGAATCGAGGAAGTA 57.697 34.615 0.00 0.00 0.00 2.24
788 793 8.196103 ACTTATGTTTAGGAATCGAGGAAGTAC 58.804 37.037 0.00 0.00 0.00 2.73
789 794 5.988310 TGTTTAGGAATCGAGGAAGTACA 57.012 39.130 0.00 0.00 0.00 2.90
790 795 6.349243 TGTTTAGGAATCGAGGAAGTACAA 57.651 37.500 0.00 0.00 0.00 2.41
791 796 6.942976 TGTTTAGGAATCGAGGAAGTACAAT 58.057 36.000 0.00 0.00 0.00 2.71
792 797 6.816640 TGTTTAGGAATCGAGGAAGTACAATG 59.183 38.462 0.00 0.00 0.00 2.82
793 798 6.785337 TTAGGAATCGAGGAAGTACAATGA 57.215 37.500 0.00 0.00 0.00 2.57
794 799 5.677319 AGGAATCGAGGAAGTACAATGAA 57.323 39.130 0.00 0.00 0.00 2.57
795 800 6.240549 AGGAATCGAGGAAGTACAATGAAT 57.759 37.500 0.00 0.00 0.00 2.57
796 801 6.284459 AGGAATCGAGGAAGTACAATGAATC 58.716 40.000 0.00 0.00 0.00 2.52
797 802 6.049149 GGAATCGAGGAAGTACAATGAATCA 58.951 40.000 0.00 0.00 0.00 2.57
798 803 6.201806 GGAATCGAGGAAGTACAATGAATCAG 59.798 42.308 0.00 0.00 0.00 2.90
799 804 5.011090 TCGAGGAAGTACAATGAATCAGG 57.989 43.478 0.00 0.00 0.00 3.86
800 805 3.557595 CGAGGAAGTACAATGAATCAGGC 59.442 47.826 0.00 0.00 0.00 4.85
801 806 4.681781 CGAGGAAGTACAATGAATCAGGCT 60.682 45.833 0.00 0.00 0.00 4.58
802 807 4.521146 AGGAAGTACAATGAATCAGGCTG 58.479 43.478 8.58 8.58 0.00 4.85
803 808 3.065925 GGAAGTACAATGAATCAGGCTGC 59.934 47.826 10.34 0.00 0.00 5.25
804 809 3.354948 AGTACAATGAATCAGGCTGCA 57.645 42.857 10.34 2.26 0.00 4.41
805 810 3.689347 AGTACAATGAATCAGGCTGCAA 58.311 40.909 10.34 0.00 0.00 4.08
806 811 4.081406 AGTACAATGAATCAGGCTGCAAA 58.919 39.130 10.34 0.00 0.00 3.68
807 812 4.523943 AGTACAATGAATCAGGCTGCAAAA 59.476 37.500 10.34 0.00 0.00 2.44
808 813 4.546829 ACAATGAATCAGGCTGCAAAAT 57.453 36.364 10.34 0.00 0.00 1.82
809 814 5.664294 ACAATGAATCAGGCTGCAAAATA 57.336 34.783 10.34 0.00 0.00 1.40
810 815 5.657474 ACAATGAATCAGGCTGCAAAATAG 58.343 37.500 10.34 0.19 0.00 1.73
811 816 5.186409 ACAATGAATCAGGCTGCAAAATAGT 59.814 36.000 10.34 0.85 0.00 2.12
812 817 5.927281 ATGAATCAGGCTGCAAAATAGTT 57.073 34.783 10.34 0.00 0.00 2.24
813 818 7.093814 ACAATGAATCAGGCTGCAAAATAGTTA 60.094 33.333 10.34 0.00 0.00 2.24
814 819 6.194796 TGAATCAGGCTGCAAAATAGTTAC 57.805 37.500 10.34 0.00 0.00 2.50
815 820 5.125417 TGAATCAGGCTGCAAAATAGTTACC 59.875 40.000 10.34 0.00 0.00 2.85
816 821 4.027674 TCAGGCTGCAAAATAGTTACCA 57.972 40.909 10.34 0.00 0.00 3.25
817 822 3.756434 TCAGGCTGCAAAATAGTTACCAC 59.244 43.478 10.34 0.00 0.00 4.16
818 823 2.747446 AGGCTGCAAAATAGTTACCACG 59.253 45.455 0.50 0.00 0.00 4.94
819 824 2.515912 GCTGCAAAATAGTTACCACGC 58.484 47.619 0.00 0.00 0.00 5.34
820 825 2.769376 CTGCAAAATAGTTACCACGCG 58.231 47.619 3.53 3.53 0.00 6.01
821 826 2.413796 CTGCAAAATAGTTACCACGCGA 59.586 45.455 15.93 0.00 0.00 5.87
822 827 2.158058 TGCAAAATAGTTACCACGCGAC 59.842 45.455 15.93 0.00 0.00 5.19
823 828 2.158058 GCAAAATAGTTACCACGCGACA 59.842 45.455 15.93 0.00 0.00 4.35
824 829 3.728600 CAAAATAGTTACCACGCGACAC 58.271 45.455 15.93 1.05 0.00 3.67
825 830 2.728690 AATAGTTACCACGCGACACA 57.271 45.000 15.93 0.00 0.00 3.72
826 831 2.953466 ATAGTTACCACGCGACACAT 57.047 45.000 15.93 0.00 0.00 3.21
827 832 1.985334 TAGTTACCACGCGACACATG 58.015 50.000 15.93 0.00 0.00 3.21
828 833 1.131826 GTTACCACGCGACACATGC 59.868 57.895 15.93 0.00 0.00 4.06
883 888 9.877178 TGAGAAATAGGAGTAATTGTTCTTCTC 57.123 33.333 0.00 0.00 0.00 2.87
884 889 9.320352 GAGAAATAGGAGTAATTGTTCTTCTCC 57.680 37.037 0.00 0.00 43.29 3.71
891 896 8.617290 GGAGTAATTGTTCTTCTCCTTGTAAA 57.383 34.615 0.00 0.00 40.78 2.01
892 897 9.063615 GGAGTAATTGTTCTTCTCCTTGTAAAA 57.936 33.333 0.00 0.00 40.78 1.52
910 915 3.625314 AAAAAGGGAGGGTTGTGCA 57.375 47.368 0.00 0.00 0.00 4.57
911 916 1.413118 AAAAAGGGAGGGTTGTGCAG 58.587 50.000 0.00 0.00 0.00 4.41
912 917 0.555769 AAAAGGGAGGGTTGTGCAGA 59.444 50.000 0.00 0.00 0.00 4.26
913 918 0.111253 AAAGGGAGGGTTGTGCAGAG 59.889 55.000 0.00 0.00 0.00 3.35
914 919 0.768221 AAGGGAGGGTTGTGCAGAGA 60.768 55.000 0.00 0.00 0.00 3.10
915 920 1.197430 AGGGAGGGTTGTGCAGAGAG 61.197 60.000 0.00 0.00 0.00 3.20
916 921 1.484444 GGGAGGGTTGTGCAGAGAGT 61.484 60.000 0.00 0.00 0.00 3.24
917 922 0.036858 GGAGGGTTGTGCAGAGAGTC 60.037 60.000 0.00 0.00 0.00 3.36
918 923 0.972883 GAGGGTTGTGCAGAGAGTCT 59.027 55.000 0.00 0.00 0.00 3.24
919 924 0.683973 AGGGTTGTGCAGAGAGTCTG 59.316 55.000 0.00 0.00 46.90 3.51
930 935 4.724074 CAGAGAGTCTGCATTCTCTTCT 57.276 45.455 17.89 14.02 45.97 2.85
1193 1256 2.520741 GCCTCCCTCTCCCTCGAG 60.521 72.222 5.13 5.13 37.48 4.04
1340 1404 5.409826 GGTCTCACAATCAGTTTCCTGTTAG 59.590 44.000 0.00 0.00 39.82 2.34
1341 1405 4.997395 TCTCACAATCAGTTTCCTGTTAGC 59.003 41.667 0.00 0.00 39.82 3.09
1342 1406 4.973168 TCACAATCAGTTTCCTGTTAGCT 58.027 39.130 0.00 0.00 39.82 3.32
1347 1411 8.134895 CACAATCAGTTTCCTGTTAGCTTTTTA 58.865 33.333 0.00 0.00 39.82 1.52
1350 1414 9.914131 AATCAGTTTCCTGTTAGCTTTTTATTC 57.086 29.630 0.00 0.00 39.82 1.75
1351 1415 8.458573 TCAGTTTCCTGTTAGCTTTTTATTCA 57.541 30.769 0.00 0.00 39.82 2.57
1352 1416 8.567948 TCAGTTTCCTGTTAGCTTTTTATTCAG 58.432 33.333 0.00 0.00 39.82 3.02
1353 1417 7.327032 CAGTTTCCTGTTAGCTTTTTATTCAGC 59.673 37.037 0.00 0.00 33.80 4.26
1375 1439 2.345244 GGGATCCTCGCATCGCAT 59.655 61.111 12.58 0.00 36.10 4.73
1389 1453 3.849953 GCATCGCGTTGGACGACC 61.850 66.667 18.16 0.00 46.05 4.79
1390 1454 3.541831 CATCGCGTTGGACGACCG 61.542 66.667 5.77 0.00 46.05 4.79
1391 1455 4.789075 ATCGCGTTGGACGACCGG 62.789 66.667 5.77 0.00 46.05 5.28
1395 1459 2.430244 CGTTGGACGACCGGACTG 60.430 66.667 9.46 0.69 46.05 3.51
1396 1460 2.911484 CGTTGGACGACCGGACTGA 61.911 63.158 9.46 0.00 46.05 3.41
1397 1461 1.590147 GTTGGACGACCGGACTGAT 59.410 57.895 9.46 0.00 39.42 2.90
1399 1463 1.203052 GTTGGACGACCGGACTGATTA 59.797 52.381 9.46 0.00 39.42 1.75
1400 1464 1.548081 TGGACGACCGGACTGATTAA 58.452 50.000 9.46 0.00 39.42 1.40
1401 1465 2.104967 TGGACGACCGGACTGATTAAT 58.895 47.619 9.46 0.00 39.42 1.40
1402 1466 2.498481 TGGACGACCGGACTGATTAATT 59.502 45.455 9.46 0.00 39.42 1.40
1404 1468 3.181478 GGACGACCGGACTGATTAATTCT 60.181 47.826 9.46 0.00 0.00 2.40
1410 1478 3.325230 GGACTGATTAATTCTGTGCGC 57.675 47.619 0.00 0.00 36.72 6.09
1414 1482 0.376852 GATTAATTCTGTGCGCGCCA 59.623 50.000 30.77 23.84 0.00 5.69
1466 1534 1.153329 TGTTCGACCGCACCTTTGT 60.153 52.632 0.00 0.00 0.00 2.83
1625 1694 4.248859 GCTCTGTTCTCACTGCTCATTTA 58.751 43.478 0.00 0.00 0.00 1.40
1696 1766 2.821969 GCCATTCAGTTGGTTCATCAGT 59.178 45.455 0.00 0.00 39.11 3.41
1725 1811 5.779806 AGTTTTCTGATGGTAATCGTTCG 57.220 39.130 0.00 0.00 35.37 3.95
1747 1833 3.624777 AGTCATAGAACCAATGCCCAAG 58.375 45.455 0.00 0.00 0.00 3.61
1751 1837 2.603075 AGAACCAATGCCCAAGCTAA 57.397 45.000 0.00 0.00 40.80 3.09
1752 1838 2.888212 AGAACCAATGCCCAAGCTAAA 58.112 42.857 0.00 0.00 40.80 1.85
1753 1839 2.562738 AGAACCAATGCCCAAGCTAAAC 59.437 45.455 0.00 0.00 40.80 2.01
1754 1840 0.887933 ACCAATGCCCAAGCTAAACG 59.112 50.000 0.00 0.00 40.80 3.60
1775 1868 3.605056 CGTGTTGATGCACATTGTCATTC 59.395 43.478 0.00 0.00 39.19 2.67
1991 2084 6.312918 TCTCGTTGTAAATGTCTATTCTTGCC 59.687 38.462 0.00 0.00 33.60 4.52
2049 2142 0.590195 GGCTGCAGATTATTGAGCCG 59.410 55.000 20.43 0.00 39.91 5.52
2154 2247 1.279271 ACTAGGCTCGCTGGTTCATTT 59.721 47.619 0.00 0.00 0.00 2.32
2242 2335 6.405538 TCAAATTTCAGTTGACAAAAAGGCT 58.594 32.000 0.00 0.00 30.08 4.58
2367 2465 2.036256 AGTTCCCAGCCATGTGCC 59.964 61.111 2.95 0.00 42.71 5.01
2579 2685 5.045942 TGCCTATGTCTTGGTGATACTTTCA 60.046 40.000 0.00 0.00 0.00 2.69
2670 2780 5.140454 ACTGAAGCCACCTGAAAAACTTAT 58.860 37.500 0.00 0.00 0.00 1.73
2836 2946 6.013379 AGTCACTATCCATGGAAGAAAGTGAA 60.013 38.462 32.45 22.30 35.88 3.18
2911 3021 3.716431 CCCTAGTAGTCCACAAGGGTTA 58.284 50.000 0.00 0.00 38.11 2.85
2929 3039 2.557490 GTTAGCTACATCTACGAGGGGG 59.443 54.545 0.00 0.00 0.00 5.40
2962 3072 5.159209 CAAATTGATGCAGAAGGTCTGTTC 58.841 41.667 7.08 5.55 45.94 3.18
2969 3079 2.931320 GCAGAAGGTCTGTTCCTTACCG 60.931 54.545 7.08 0.00 46.38 4.02
3036 3147 2.645838 GCTATCAGCTTTCCCCATGA 57.354 50.000 0.00 0.00 38.45 3.07
3050 3161 1.401552 CCCATGAGCATAACCGTGTTG 59.598 52.381 0.00 0.00 0.00 3.33
3055 3175 1.804151 GAGCATAACCGTGTTGCTTCA 59.196 47.619 9.23 0.00 46.21 3.02
3060 3180 0.951558 AACCGTGTTGCTTCATGTCC 59.048 50.000 0.00 0.00 0.00 4.02
3154 3274 8.386264 TCTTCTTCCATCTACTTGAGGATTTTT 58.614 33.333 0.00 0.00 0.00 1.94
3195 3315 8.074474 TGTTGCATAATCACAAATTTTCAGTG 57.926 30.769 0.00 1.65 34.67 3.66
3224 3344 3.849527 AGCAGGTTCAAGATTCCCTTTT 58.150 40.909 0.00 0.00 31.42 2.27
3478 3604 2.669364 ACATACGTCGTTCAAGTGTCC 58.331 47.619 1.78 0.00 0.00 4.02
3642 3768 1.065551 GTAATTGATGGCCGGCTGAAC 59.934 52.381 28.56 15.60 0.00 3.18
3730 3856 1.069227 GTTAGGACACTTGCCAAAGCG 60.069 52.381 0.00 0.00 44.31 4.68
3815 3941 3.585862 TCTCCTTGACTTGTTATCGCAC 58.414 45.455 0.00 0.00 0.00 5.34
3836 3962 1.672356 CCACCAGGAGAAACAGCCG 60.672 63.158 0.00 0.00 36.89 5.52
3851 3977 2.774799 GCCGCTACCTGCCAATTGG 61.775 63.158 20.81 20.81 38.78 3.16
3951 4077 3.555377 CCAAGCAAACATCAATTCTGCCA 60.555 43.478 0.00 0.00 33.41 4.92
3970 4096 3.055891 GCCATTAGCCTGACATGGTTTTT 60.056 43.478 0.00 0.00 39.88 1.94
4010 4136 1.543802 ACAGTAGTGACAGCTGCTCTC 59.456 52.381 15.27 11.31 33.87 3.20
4028 4154 7.201732 GCTGCTCTCTTGCTTTAATTATTGGTA 60.202 37.037 0.00 0.00 0.00 3.25
4123 4249 3.314080 TGGCTAGTCTGTTTTGTTTTCCG 59.686 43.478 0.00 0.00 0.00 4.30
4355 4481 1.295423 GGTAAGGCAGGCGTCTTGA 59.705 57.895 6.48 0.00 37.71 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.287552 ACTACACAGTCTACATTAGGGGG 58.712 47.826 0.00 0.00 0.00 5.40
32 33 8.467598 ACATGGTTACTACACAGTCTACATTAG 58.532 37.037 0.00 0.00 36.14 1.73
85 86 9.846248 GATCCATATGGCATTGTTAAAGATAAC 57.154 33.333 17.58 0.00 37.53 1.89
120 121 5.222130 ACTCAACATCATCCCTAAAACCTGT 60.222 40.000 0.00 0.00 0.00 4.00
134 135 5.471116 CAGATCTTGGTCAAACTCAACATCA 59.529 40.000 0.00 0.00 0.00 3.07
139 140 3.754965 CCCAGATCTTGGTCAAACTCAA 58.245 45.455 4.61 0.00 46.25 3.02
158 159 1.963464 TTTCGGGACCAGTATCGCCC 61.963 60.000 0.00 0.00 37.21 6.13
159 160 0.808847 GTTTCGGGACCAGTATCGCC 60.809 60.000 0.00 0.00 0.00 5.54
160 161 0.108520 TGTTTCGGGACCAGTATCGC 60.109 55.000 0.00 0.00 0.00 4.58
186 187 3.007614 TCAAGAAGTCCCCTAAGGTTTCG 59.992 47.826 0.00 0.00 36.23 3.46
192 193 4.354662 AGTACCTCAAGAAGTCCCCTAAG 58.645 47.826 0.00 0.00 0.00 2.18
195 196 3.277416 AAGTACCTCAAGAAGTCCCCT 57.723 47.619 0.00 0.00 0.00 4.79
200 201 9.549078 CTTTCTCTTTTAAGTACCTCAAGAAGT 57.451 33.333 0.00 0.00 0.00 3.01
219 220 0.667792 GACGCGCCTTCACTTTCTCT 60.668 55.000 5.73 0.00 0.00 3.10
221 222 0.601558 TAGACGCGCCTTCACTTTCT 59.398 50.000 5.73 0.00 0.00 2.52
222 223 1.126296 GTTAGACGCGCCTTCACTTTC 59.874 52.381 5.73 0.00 0.00 2.62
223 224 1.145803 GTTAGACGCGCCTTCACTTT 58.854 50.000 5.73 0.00 0.00 2.66
236 237 1.282157 AGCCACCCTTGATGGTTAGAC 59.718 52.381 0.00 0.00 39.63 2.59
250 251 0.673022 CTTGTCTCTGCTCAGCCACC 60.673 60.000 0.00 0.00 0.00 4.61
261 262 1.265095 CGCAATGCACAACTTGTCTCT 59.735 47.619 5.91 0.00 0.00 3.10
263 264 1.265095 CTCGCAATGCACAACTTGTCT 59.735 47.619 5.91 0.00 0.00 3.41
272 273 1.660560 AATCCCTGCTCGCAATGCAC 61.661 55.000 5.91 0.00 36.37 4.57
273 274 1.378882 GAATCCCTGCTCGCAATGCA 61.379 55.000 5.91 0.00 38.81 3.96
274 275 1.358046 GAATCCCTGCTCGCAATGC 59.642 57.895 0.00 0.00 0.00 3.56
277 278 0.107993 CTCTGAATCCCTGCTCGCAA 60.108 55.000 0.00 0.00 0.00 4.85
302 303 0.320683 TTGGAGTGGATGTGCGTGAG 60.321 55.000 0.00 0.00 0.00 3.51
307 308 1.956477 ACTTGTTTGGAGTGGATGTGC 59.044 47.619 0.00 0.00 0.00 4.57
309 310 3.181476 GCAAACTTGTTTGGAGTGGATGT 60.181 43.478 22.52 0.00 32.78 3.06
327 328 2.633967 ACATCCCAGCATTCAAAGCAAA 59.366 40.909 0.00 0.00 0.00 3.68
352 353 0.250234 CTGAAGCACCGATGAAGGGA 59.750 55.000 0.00 0.00 35.02 4.20
362 363 0.671781 ATCACGTCAGCTGAAGCACC 60.672 55.000 26.72 10.14 45.16 5.01
380 385 0.111061 TTGCAGCTGGTTGTGGAGAT 59.889 50.000 17.12 0.00 0.00 2.75
383 388 1.827789 GGTTGCAGCTGGTTGTGGA 60.828 57.895 17.12 0.00 0.00 4.02
396 401 2.747855 CTTCAGCGGAGGGGTTGC 60.748 66.667 0.00 0.00 0.00 4.17
421 426 6.059787 ACAACTCAAAGATATTGAGAGCCT 57.940 37.500 21.36 0.22 46.57 4.58
429 434 9.793259 TTAGGTGAAGAACAACTCAAAGATATT 57.207 29.630 0.00 0.00 43.93 1.28
430 435 9.965902 ATTAGGTGAAGAACAACTCAAAGATAT 57.034 29.630 0.00 0.00 43.93 1.63
431 436 9.219603 CATTAGGTGAAGAACAACTCAAAGATA 57.780 33.333 0.00 0.00 43.93 1.98
432 437 7.721399 ACATTAGGTGAAGAACAACTCAAAGAT 59.279 33.333 0.00 0.00 43.93 2.40
433 438 7.054124 ACATTAGGTGAAGAACAACTCAAAGA 58.946 34.615 0.00 0.00 43.93 2.52
434 439 7.264373 ACATTAGGTGAAGAACAACTCAAAG 57.736 36.000 0.00 0.00 43.93 2.77
488 493 9.398170 GCGACAAAGTTTATTGCATCATTATAT 57.602 29.630 1.03 0.00 33.52 0.86
489 494 7.860373 GGCGACAAAGTTTATTGCATCATTATA 59.140 33.333 8.34 0.00 33.52 0.98
490 495 6.697019 GGCGACAAAGTTTATTGCATCATTAT 59.303 34.615 8.34 0.00 33.52 1.28
491 496 6.033341 GGCGACAAAGTTTATTGCATCATTA 58.967 36.000 8.34 0.00 33.52 1.90
492 497 4.864247 GGCGACAAAGTTTATTGCATCATT 59.136 37.500 8.34 0.00 33.52 2.57
493 498 4.082300 TGGCGACAAAGTTTATTGCATCAT 60.082 37.500 8.34 0.00 37.44 2.45
494 499 3.254411 TGGCGACAAAGTTTATTGCATCA 59.746 39.130 8.34 0.00 37.44 3.07
495 500 3.832276 TGGCGACAAAGTTTATTGCATC 58.168 40.909 8.34 0.00 37.44 3.91
496 501 3.255642 ACTGGCGACAAAGTTTATTGCAT 59.744 39.130 8.34 0.00 42.06 3.96
497 502 2.621055 ACTGGCGACAAAGTTTATTGCA 59.379 40.909 8.34 0.00 42.06 4.08
498 503 3.282831 ACTGGCGACAAAGTTTATTGC 57.717 42.857 0.00 0.00 42.06 3.56
499 504 4.226761 GGAACTGGCGACAAAGTTTATTG 58.773 43.478 0.00 0.00 42.06 1.90
500 505 3.058501 CGGAACTGGCGACAAAGTTTATT 60.059 43.478 0.00 0.00 42.06 1.40
501 506 2.482721 CGGAACTGGCGACAAAGTTTAT 59.517 45.455 0.00 0.00 42.06 1.40
502 507 1.868498 CGGAACTGGCGACAAAGTTTA 59.132 47.619 0.00 0.00 42.06 2.01
503 508 0.661020 CGGAACTGGCGACAAAGTTT 59.339 50.000 0.00 0.00 42.06 2.66
504 509 0.179067 TCGGAACTGGCGACAAAGTT 60.179 50.000 0.00 0.00 42.06 2.66
505 510 0.179067 TTCGGAACTGGCGACAAAGT 60.179 50.000 0.00 0.00 42.06 2.66
506 511 1.128692 GATTCGGAACTGGCGACAAAG 59.871 52.381 0.00 0.00 42.06 2.77
507 512 1.153353 GATTCGGAACTGGCGACAAA 58.847 50.000 0.00 0.00 42.06 2.83
508 513 0.034198 TGATTCGGAACTGGCGACAA 59.966 50.000 0.00 0.00 42.06 3.18
509 514 0.249120 ATGATTCGGAACTGGCGACA 59.751 50.000 0.00 0.00 39.59 4.35
510 515 0.652592 CATGATTCGGAACTGGCGAC 59.347 55.000 0.00 0.00 0.00 5.19
511 516 0.461870 CCATGATTCGGAACTGGCGA 60.462 55.000 0.00 0.00 0.00 5.54
512 517 0.744414 ACCATGATTCGGAACTGGCG 60.744 55.000 13.03 0.00 0.00 5.69
513 518 1.463674 AACCATGATTCGGAACTGGC 58.536 50.000 13.03 0.00 0.00 4.85
514 519 5.125417 ACAATAAACCATGATTCGGAACTGG 59.875 40.000 12.01 12.01 0.00 4.00
515 520 6.194796 ACAATAAACCATGATTCGGAACTG 57.805 37.500 0.00 0.00 0.00 3.16
516 521 7.931578 TTACAATAAACCATGATTCGGAACT 57.068 32.000 0.00 0.00 0.00 3.01
517 522 8.973835 TTTTACAATAAACCATGATTCGGAAC 57.026 30.769 0.00 0.00 0.00 3.62
518 523 9.579768 CATTTTACAATAAACCATGATTCGGAA 57.420 29.630 0.00 0.00 0.00 4.30
519 524 8.744652 ACATTTTACAATAAACCATGATTCGGA 58.255 29.630 0.00 0.00 0.00 4.55
520 525 8.925161 ACATTTTACAATAAACCATGATTCGG 57.075 30.769 0.00 0.00 0.00 4.30
528 533 9.619316 CGAGATCAAACATTTTACAATAAACCA 57.381 29.630 0.00 0.00 0.00 3.67
529 534 9.620660 ACGAGATCAAACATTTTACAATAAACC 57.379 29.630 0.00 0.00 0.00 3.27
535 540 8.653338 GCTACTACGAGATCAAACATTTTACAA 58.347 33.333 0.00 0.00 0.00 2.41
536 541 8.033038 AGCTACTACGAGATCAAACATTTTACA 58.967 33.333 0.00 0.00 0.00 2.41
537 542 8.408743 AGCTACTACGAGATCAAACATTTTAC 57.591 34.615 0.00 0.00 0.00 2.01
538 543 8.467598 AGAGCTACTACGAGATCAAACATTTTA 58.532 33.333 0.00 0.00 34.19 1.52
539 544 7.324178 AGAGCTACTACGAGATCAAACATTTT 58.676 34.615 0.00 0.00 34.19 1.82
540 545 6.868622 AGAGCTACTACGAGATCAAACATTT 58.131 36.000 0.00 0.00 34.19 2.32
541 546 6.320164 AGAGAGCTACTACGAGATCAAACATT 59.680 38.462 0.00 0.00 34.19 2.71
542 547 5.825679 AGAGAGCTACTACGAGATCAAACAT 59.174 40.000 0.00 0.00 34.19 2.71
543 548 5.065346 CAGAGAGCTACTACGAGATCAAACA 59.935 44.000 0.00 0.00 34.19 2.83
544 549 5.504994 CCAGAGAGCTACTACGAGATCAAAC 60.505 48.000 0.00 0.00 34.19 2.93
545 550 4.576873 CCAGAGAGCTACTACGAGATCAAA 59.423 45.833 0.00 0.00 34.19 2.69
546 551 4.130857 CCAGAGAGCTACTACGAGATCAA 58.869 47.826 0.00 0.00 34.19 2.57
547 552 3.134985 ACCAGAGAGCTACTACGAGATCA 59.865 47.826 0.00 0.00 34.19 2.92
548 553 3.735591 ACCAGAGAGCTACTACGAGATC 58.264 50.000 0.00 0.00 31.80 2.75
549 554 3.849563 ACCAGAGAGCTACTACGAGAT 57.150 47.619 0.00 0.00 0.00 2.75
550 555 3.493002 GCTACCAGAGAGCTACTACGAGA 60.493 52.174 0.00 0.00 36.96 4.04
551 556 2.803956 GCTACCAGAGAGCTACTACGAG 59.196 54.545 0.00 0.00 36.96 4.18
552 557 2.836262 GCTACCAGAGAGCTACTACGA 58.164 52.381 0.00 0.00 36.96 3.43
560 565 2.289072 TGTCACAAAGCTACCAGAGAGC 60.289 50.000 0.00 0.00 40.42 4.09
561 566 3.583806 CTGTCACAAAGCTACCAGAGAG 58.416 50.000 0.00 0.00 0.00 3.20
562 567 2.300152 CCTGTCACAAAGCTACCAGAGA 59.700 50.000 0.00 0.00 0.00 3.10
563 568 2.300152 TCCTGTCACAAAGCTACCAGAG 59.700 50.000 0.00 0.00 0.00 3.35
564 569 2.325484 TCCTGTCACAAAGCTACCAGA 58.675 47.619 0.00 0.00 0.00 3.86
565 570 2.839486 TCCTGTCACAAAGCTACCAG 57.161 50.000 0.00 0.00 0.00 4.00
566 571 3.569194 TTTCCTGTCACAAAGCTACCA 57.431 42.857 0.00 0.00 0.00 3.25
567 572 3.253432 CCTTTTCCTGTCACAAAGCTACC 59.747 47.826 0.00 0.00 0.00 3.18
568 573 3.883489 ACCTTTTCCTGTCACAAAGCTAC 59.117 43.478 0.00 0.00 0.00 3.58
569 574 4.134563 GACCTTTTCCTGTCACAAAGCTA 58.865 43.478 0.00 0.00 0.00 3.32
570 575 2.952310 GACCTTTTCCTGTCACAAAGCT 59.048 45.455 0.00 0.00 0.00 3.74
571 576 2.952310 AGACCTTTTCCTGTCACAAAGC 59.048 45.455 0.00 0.00 33.89 3.51
572 577 4.214332 GCTAGACCTTTTCCTGTCACAAAG 59.786 45.833 0.00 0.00 33.89 2.77
573 578 4.134563 GCTAGACCTTTTCCTGTCACAAA 58.865 43.478 0.00 0.00 33.89 2.83
574 579 3.391296 AGCTAGACCTTTTCCTGTCACAA 59.609 43.478 0.00 0.00 33.89 3.33
575 580 2.972713 AGCTAGACCTTTTCCTGTCACA 59.027 45.455 0.00 0.00 33.89 3.58
576 581 3.686916 AGCTAGACCTTTTCCTGTCAC 57.313 47.619 0.00 0.00 33.89 3.67
577 582 4.706842 AAAGCTAGACCTTTTCCTGTCA 57.293 40.909 0.00 0.00 31.25 3.58
622 627 6.256539 CAGATAGTAGCAAGATCGCTGAAAAA 59.743 38.462 5.46 0.00 43.68 1.94
623 628 5.750547 CAGATAGTAGCAAGATCGCTGAAAA 59.249 40.000 5.46 0.00 43.68 2.29
624 629 5.067805 TCAGATAGTAGCAAGATCGCTGAAA 59.932 40.000 5.46 0.00 43.68 2.69
625 630 4.580580 TCAGATAGTAGCAAGATCGCTGAA 59.419 41.667 5.46 0.00 43.68 3.02
626 631 4.137543 TCAGATAGTAGCAAGATCGCTGA 58.862 43.478 5.46 0.00 43.68 4.26
627 632 4.495911 TCAGATAGTAGCAAGATCGCTG 57.504 45.455 5.46 0.00 43.68 5.18
628 633 4.339530 TGTTCAGATAGTAGCAAGATCGCT 59.660 41.667 0.65 0.65 46.26 4.93
629 634 4.611943 TGTTCAGATAGTAGCAAGATCGC 58.388 43.478 0.00 0.00 0.00 4.58
630 635 6.143598 CACATGTTCAGATAGTAGCAAGATCG 59.856 42.308 0.00 0.00 0.00 3.69
631 636 6.423302 CCACATGTTCAGATAGTAGCAAGATC 59.577 42.308 0.00 0.00 0.00 2.75
632 637 6.126940 ACCACATGTTCAGATAGTAGCAAGAT 60.127 38.462 0.00 0.00 0.00 2.40
633 638 5.187772 ACCACATGTTCAGATAGTAGCAAGA 59.812 40.000 0.00 0.00 0.00 3.02
634 639 5.423015 ACCACATGTTCAGATAGTAGCAAG 58.577 41.667 0.00 0.00 0.00 4.01
635 640 5.420725 ACCACATGTTCAGATAGTAGCAA 57.579 39.130 0.00 0.00 0.00 3.91
636 641 5.420725 AACCACATGTTCAGATAGTAGCA 57.579 39.130 0.00 0.00 28.45 3.49
637 642 5.005779 CGAAACCACATGTTCAGATAGTAGC 59.994 44.000 0.00 0.00 35.67 3.58
638 643 6.100004 ACGAAACCACATGTTCAGATAGTAG 58.900 40.000 0.00 0.00 35.67 2.57
639 644 6.032956 ACGAAACCACATGTTCAGATAGTA 57.967 37.500 0.00 0.00 35.67 1.82
640 645 4.894784 ACGAAACCACATGTTCAGATAGT 58.105 39.130 0.00 0.00 35.67 2.12
641 646 5.862924 AACGAAACCACATGTTCAGATAG 57.137 39.130 0.00 0.00 35.67 2.08
642 647 9.607988 AATATAACGAAACCACATGTTCAGATA 57.392 29.630 0.00 0.00 35.67 1.98
643 648 8.506168 AATATAACGAAACCACATGTTCAGAT 57.494 30.769 0.00 0.00 35.67 2.90
644 649 7.604545 TGAATATAACGAAACCACATGTTCAGA 59.395 33.333 0.00 0.00 35.67 3.27
645 650 7.747888 TGAATATAACGAAACCACATGTTCAG 58.252 34.615 0.00 0.00 35.67 3.02
646 651 7.674471 TGAATATAACGAAACCACATGTTCA 57.326 32.000 0.00 0.00 35.67 3.18
658 663 9.952030 TGGCTCCATTATATTGAATATAACGAA 57.048 29.630 17.23 7.10 39.69 3.85
659 664 9.952030 TTGGCTCCATTATATTGAATATAACGA 57.048 29.630 17.23 14.45 39.69 3.85
664 669 9.638176 GATCCTTGGCTCCATTATATTGAATAT 57.362 33.333 2.91 2.91 0.00 1.28
665 670 7.770433 CGATCCTTGGCTCCATTATATTGAATA 59.230 37.037 0.00 0.00 0.00 1.75
666 671 6.600822 CGATCCTTGGCTCCATTATATTGAAT 59.399 38.462 0.00 0.00 0.00 2.57
667 672 5.939883 CGATCCTTGGCTCCATTATATTGAA 59.060 40.000 0.00 0.00 0.00 2.69
668 673 5.248248 TCGATCCTTGGCTCCATTATATTGA 59.752 40.000 0.00 0.00 0.00 2.57
669 674 5.491070 TCGATCCTTGGCTCCATTATATTG 58.509 41.667 0.00 0.00 0.00 1.90
670 675 5.249393 ACTCGATCCTTGGCTCCATTATATT 59.751 40.000 0.00 0.00 0.00 1.28
671 676 4.780021 ACTCGATCCTTGGCTCCATTATAT 59.220 41.667 0.00 0.00 0.00 0.86
672 677 4.160329 ACTCGATCCTTGGCTCCATTATA 58.840 43.478 0.00 0.00 0.00 0.98
673 678 2.975489 ACTCGATCCTTGGCTCCATTAT 59.025 45.455 0.00 0.00 0.00 1.28
674 679 2.365617 GACTCGATCCTTGGCTCCATTA 59.634 50.000 0.00 0.00 0.00 1.90
675 680 1.139853 GACTCGATCCTTGGCTCCATT 59.860 52.381 0.00 0.00 0.00 3.16
676 681 0.755686 GACTCGATCCTTGGCTCCAT 59.244 55.000 0.00 0.00 0.00 3.41
677 682 1.330655 GGACTCGATCCTTGGCTCCA 61.331 60.000 6.63 0.00 45.22 3.86
678 683 1.443828 GGACTCGATCCTTGGCTCC 59.556 63.158 6.63 0.00 45.22 4.70
684 689 7.475223 TTTTAGGTAAAAAGGGACTCGATCCTT 60.475 37.037 11.91 10.25 44.53 3.36
685 690 6.013119 TTTTAGGTAAAAAGGGACTCGATCCT 60.013 38.462 11.91 5.36 38.49 3.24
686 691 6.175471 TTTTAGGTAAAAAGGGACTCGATCC 58.825 40.000 5.59 5.59 38.49 3.36
687 692 7.677454 TTTTTAGGTAAAAAGGGACTCGATC 57.323 36.000 3.95 0.00 38.49 3.69
699 704 9.320352 GCCAAATGAGTTTCTTTTTAGGTAAAA 57.680 29.630 0.00 0.00 34.64 1.52
700 705 8.700973 AGCCAAATGAGTTTCTTTTTAGGTAAA 58.299 29.630 0.00 0.00 0.00 2.01
701 706 8.245195 AGCCAAATGAGTTTCTTTTTAGGTAA 57.755 30.769 0.00 0.00 0.00 2.85
702 707 7.039993 GGAGCCAAATGAGTTTCTTTTTAGGTA 60.040 37.037 0.00 0.00 0.00 3.08
703 708 6.239317 GGAGCCAAATGAGTTTCTTTTTAGGT 60.239 38.462 0.00 0.00 0.00 3.08
704 709 6.159293 GGAGCCAAATGAGTTTCTTTTTAGG 58.841 40.000 0.00 0.00 0.00 2.69
705 710 5.858581 CGGAGCCAAATGAGTTTCTTTTTAG 59.141 40.000 0.00 0.00 0.00 1.85
706 711 5.300792 ACGGAGCCAAATGAGTTTCTTTTTA 59.699 36.000 0.00 0.00 0.00 1.52
707 712 4.099419 ACGGAGCCAAATGAGTTTCTTTTT 59.901 37.500 0.00 0.00 0.00 1.94
708 713 3.636764 ACGGAGCCAAATGAGTTTCTTTT 59.363 39.130 0.00 0.00 0.00 2.27
709 714 3.222603 ACGGAGCCAAATGAGTTTCTTT 58.777 40.909 0.00 0.00 0.00 2.52
710 715 2.863809 ACGGAGCCAAATGAGTTTCTT 58.136 42.857 0.00 0.00 0.00 2.52
711 716 2.568623 ACGGAGCCAAATGAGTTTCT 57.431 45.000 0.00 0.00 0.00 2.52
712 717 6.929606 ACTATATACGGAGCCAAATGAGTTTC 59.070 38.462 0.00 0.00 0.00 2.78
713 718 6.827727 ACTATATACGGAGCCAAATGAGTTT 58.172 36.000 0.00 0.00 0.00 2.66
714 719 6.420913 ACTATATACGGAGCCAAATGAGTT 57.579 37.500 0.00 0.00 0.00 3.01
715 720 6.420913 AACTATATACGGAGCCAAATGAGT 57.579 37.500 0.00 0.00 0.00 3.41
756 761 8.947115 CCTCGATTCCTAAACATAAGTCTTTTT 58.053 33.333 0.00 0.00 0.00 1.94
757 762 8.319146 TCCTCGATTCCTAAACATAAGTCTTTT 58.681 33.333 0.00 0.00 0.00 2.27
758 763 7.848128 TCCTCGATTCCTAAACATAAGTCTTT 58.152 34.615 0.00 0.00 0.00 2.52
759 764 7.419711 TCCTCGATTCCTAAACATAAGTCTT 57.580 36.000 0.00 0.00 0.00 3.01
760 765 7.124448 ACTTCCTCGATTCCTAAACATAAGTCT 59.876 37.037 0.00 0.00 0.00 3.24
761 766 7.266400 ACTTCCTCGATTCCTAAACATAAGTC 58.734 38.462 0.00 0.00 0.00 3.01
762 767 7.184067 ACTTCCTCGATTCCTAAACATAAGT 57.816 36.000 0.00 0.00 0.00 2.24
763 768 8.195436 TGTACTTCCTCGATTCCTAAACATAAG 58.805 37.037 0.00 0.00 0.00 1.73
764 769 8.070034 TGTACTTCCTCGATTCCTAAACATAA 57.930 34.615 0.00 0.00 0.00 1.90
765 770 7.649533 TGTACTTCCTCGATTCCTAAACATA 57.350 36.000 0.00 0.00 0.00 2.29
766 771 6.540438 TGTACTTCCTCGATTCCTAAACAT 57.460 37.500 0.00 0.00 0.00 2.71
767 772 5.988310 TGTACTTCCTCGATTCCTAAACA 57.012 39.130 0.00 0.00 0.00 2.83
768 773 7.039882 TCATTGTACTTCCTCGATTCCTAAAC 58.960 38.462 0.00 0.00 0.00 2.01
769 774 7.177832 TCATTGTACTTCCTCGATTCCTAAA 57.822 36.000 0.00 0.00 0.00 1.85
770 775 6.785337 TCATTGTACTTCCTCGATTCCTAA 57.215 37.500 0.00 0.00 0.00 2.69
771 776 6.785337 TTCATTGTACTTCCTCGATTCCTA 57.215 37.500 0.00 0.00 0.00 2.94
772 777 5.677319 TTCATTGTACTTCCTCGATTCCT 57.323 39.130 0.00 0.00 0.00 3.36
773 778 6.049149 TGATTCATTGTACTTCCTCGATTCC 58.951 40.000 0.00 0.00 0.00 3.01
774 779 6.201806 CCTGATTCATTGTACTTCCTCGATTC 59.798 42.308 0.00 0.00 0.00 2.52
775 780 6.051717 CCTGATTCATTGTACTTCCTCGATT 58.948 40.000 0.00 0.00 0.00 3.34
776 781 5.605534 CCTGATTCATTGTACTTCCTCGAT 58.394 41.667 0.00 0.00 0.00 3.59
777 782 4.680708 GCCTGATTCATTGTACTTCCTCGA 60.681 45.833 0.00 0.00 0.00 4.04
778 783 3.557595 GCCTGATTCATTGTACTTCCTCG 59.442 47.826 0.00 0.00 0.00 4.63
779 784 4.574013 CAGCCTGATTCATTGTACTTCCTC 59.426 45.833 0.00 0.00 0.00 3.71
780 785 4.521146 CAGCCTGATTCATTGTACTTCCT 58.479 43.478 0.00 0.00 0.00 3.36
781 786 3.065925 GCAGCCTGATTCATTGTACTTCC 59.934 47.826 0.00 0.00 0.00 3.46
782 787 3.691118 TGCAGCCTGATTCATTGTACTTC 59.309 43.478 0.00 0.00 0.00 3.01
783 788 3.689347 TGCAGCCTGATTCATTGTACTT 58.311 40.909 0.00 0.00 0.00 2.24
784 789 3.354948 TGCAGCCTGATTCATTGTACT 57.645 42.857 0.00 0.00 0.00 2.73
785 790 4.439305 TTTGCAGCCTGATTCATTGTAC 57.561 40.909 0.00 0.00 0.00 2.90
786 791 5.664294 ATTTTGCAGCCTGATTCATTGTA 57.336 34.783 0.00 0.00 0.00 2.41
787 792 4.546829 ATTTTGCAGCCTGATTCATTGT 57.453 36.364 0.00 0.00 0.00 2.71
788 793 5.657474 ACTATTTTGCAGCCTGATTCATTG 58.343 37.500 0.00 0.00 0.00 2.82
789 794 5.927281 ACTATTTTGCAGCCTGATTCATT 57.073 34.783 0.00 0.00 0.00 2.57
790 795 5.927281 AACTATTTTGCAGCCTGATTCAT 57.073 34.783 0.00 0.00 0.00 2.57
791 796 5.125417 GGTAACTATTTTGCAGCCTGATTCA 59.875 40.000 0.00 0.00 0.00 2.57
792 797 5.125417 TGGTAACTATTTTGCAGCCTGATTC 59.875 40.000 0.00 0.00 37.61 2.52
793 798 5.016173 TGGTAACTATTTTGCAGCCTGATT 58.984 37.500 0.00 0.00 37.61 2.57
794 799 4.399303 GTGGTAACTATTTTGCAGCCTGAT 59.601 41.667 0.00 0.00 37.61 2.90
795 800 3.756434 GTGGTAACTATTTTGCAGCCTGA 59.244 43.478 0.00 0.00 37.61 3.86
796 801 3.426159 CGTGGTAACTATTTTGCAGCCTG 60.426 47.826 0.00 0.00 37.61 4.85
797 802 2.747446 CGTGGTAACTATTTTGCAGCCT 59.253 45.455 0.00 0.00 37.61 4.58
798 803 2.731027 GCGTGGTAACTATTTTGCAGCC 60.731 50.000 0.00 0.00 37.61 4.85
799 804 2.515912 GCGTGGTAACTATTTTGCAGC 58.484 47.619 0.00 0.00 37.61 5.25
800 805 2.413796 TCGCGTGGTAACTATTTTGCAG 59.586 45.455 5.77 0.00 37.61 4.41
801 806 2.158058 GTCGCGTGGTAACTATTTTGCA 59.842 45.455 5.77 0.00 37.61 4.08
802 807 2.158058 TGTCGCGTGGTAACTATTTTGC 59.842 45.455 5.77 0.00 37.61 3.68
803 808 3.184783 TGTGTCGCGTGGTAACTATTTTG 59.815 43.478 5.77 0.00 37.61 2.44
804 809 3.391965 TGTGTCGCGTGGTAACTATTTT 58.608 40.909 5.77 0.00 37.61 1.82
805 810 3.029320 TGTGTCGCGTGGTAACTATTT 57.971 42.857 5.77 0.00 37.61 1.40
806 811 2.728690 TGTGTCGCGTGGTAACTATT 57.271 45.000 5.77 0.00 37.61 1.73
807 812 2.536365 CATGTGTCGCGTGGTAACTAT 58.464 47.619 5.77 0.00 37.61 2.12
808 813 1.985334 CATGTGTCGCGTGGTAACTA 58.015 50.000 5.77 0.00 37.61 2.24
809 814 1.289109 GCATGTGTCGCGTGGTAACT 61.289 55.000 5.77 0.00 34.74 2.24
810 815 1.131826 GCATGTGTCGCGTGGTAAC 59.868 57.895 5.77 0.00 34.74 2.50
811 816 3.556625 GCATGTGTCGCGTGGTAA 58.443 55.556 5.77 0.00 34.74 2.85
818 823 2.005995 TGCTTATCGCATGTGTCGC 58.994 52.632 6.09 5.66 45.47 5.19
857 862 9.877178 GAGAAGAACAATTACTCCTATTTCTCA 57.123 33.333 0.00 0.00 37.69 3.27
858 863 9.320352 GGAGAAGAACAATTACTCCTATTTCTC 57.680 37.037 0.00 0.00 42.41 2.87
866 871 8.617290 TTTACAAGGAGAAGAACAATTACTCC 57.383 34.615 0.00 0.00 44.97 3.85
892 897 1.063266 TCTGCACAACCCTCCCTTTTT 60.063 47.619 0.00 0.00 0.00 1.94
893 898 0.555769 TCTGCACAACCCTCCCTTTT 59.444 50.000 0.00 0.00 0.00 2.27
894 899 0.111253 CTCTGCACAACCCTCCCTTT 59.889 55.000 0.00 0.00 0.00 3.11
895 900 0.768221 TCTCTGCACAACCCTCCCTT 60.768 55.000 0.00 0.00 0.00 3.95
896 901 1.152030 TCTCTGCACAACCCTCCCT 60.152 57.895 0.00 0.00 0.00 4.20
897 902 1.298014 CTCTCTGCACAACCCTCCC 59.702 63.158 0.00 0.00 0.00 4.30
898 903 0.036858 GACTCTCTGCACAACCCTCC 60.037 60.000 0.00 0.00 0.00 4.30
899 904 0.972883 AGACTCTCTGCACAACCCTC 59.027 55.000 0.00 0.00 0.00 4.30
900 905 0.683973 CAGACTCTCTGCACAACCCT 59.316 55.000 0.00 0.00 37.72 4.34
901 906 3.223661 CAGACTCTCTGCACAACCC 57.776 57.895 0.00 0.00 37.72 4.11
909 914 4.724074 AGAAGAGAATGCAGACTCTCTG 57.276 45.455 20.53 0.00 46.12 3.35
911 916 5.329035 AGAAGAAGAGAATGCAGACTCTC 57.671 43.478 20.51 16.81 41.77 3.20
912 917 5.481473 AGAAGAAGAAGAGAATGCAGACTCT 59.519 40.000 16.41 16.41 44.03 3.24
913 918 5.723295 AGAAGAAGAAGAGAATGCAGACTC 58.277 41.667 12.98 12.98 0.00 3.36
914 919 5.743636 AGAAGAAGAAGAGAATGCAGACT 57.256 39.130 0.00 0.00 0.00 3.24
915 920 6.165577 AGAAGAAGAAGAAGAGAATGCAGAC 58.834 40.000 0.00 0.00 0.00 3.51
916 921 6.211184 AGAGAAGAAGAAGAAGAGAATGCAGA 59.789 38.462 0.00 0.00 0.00 4.26
917 922 6.400568 AGAGAAGAAGAAGAAGAGAATGCAG 58.599 40.000 0.00 0.00 0.00 4.41
918 923 6.211184 AGAGAGAAGAAGAAGAAGAGAATGCA 59.789 38.462 0.00 0.00 0.00 3.96
919 924 6.633856 AGAGAGAAGAAGAAGAAGAGAATGC 58.366 40.000 0.00 0.00 0.00 3.56
920 925 7.063780 GCAAGAGAGAAGAAGAAGAAGAGAATG 59.936 40.741 0.00 0.00 0.00 2.67
921 926 7.099120 GCAAGAGAGAAGAAGAAGAAGAGAAT 58.901 38.462 0.00 0.00 0.00 2.40
922 927 6.454795 GCAAGAGAGAAGAAGAAGAAGAGAA 58.545 40.000 0.00 0.00 0.00 2.87
923 928 5.047377 GGCAAGAGAGAAGAAGAAGAAGAGA 60.047 44.000 0.00 0.00 0.00 3.10
924 929 5.170748 GGCAAGAGAGAAGAAGAAGAAGAG 58.829 45.833 0.00 0.00 0.00 2.85
930 935 1.338200 GCCGGCAAGAGAGAAGAAGAA 60.338 52.381 24.80 0.00 0.00 2.52
1219 1282 2.828480 GAAGAAGGCCTGGACCCTGC 62.828 65.000 5.69 0.00 31.73 4.85
1340 1404 4.535526 TCCCCAAAGCTGAATAAAAAGC 57.464 40.909 0.00 0.00 39.82 3.51
1341 1405 5.423290 AGGATCCCCAAAGCTGAATAAAAAG 59.577 40.000 8.55 0.00 33.88 2.27
1342 1406 5.341169 AGGATCCCCAAAGCTGAATAAAAA 58.659 37.500 8.55 0.00 33.88 1.94
1347 1411 1.133976 CGAGGATCCCCAAAGCTGAAT 60.134 52.381 8.55 0.00 33.88 2.57
1350 1414 1.821332 GCGAGGATCCCCAAAGCTG 60.821 63.158 8.55 0.00 33.88 4.24
1351 1415 1.639635 ATGCGAGGATCCCCAAAGCT 61.640 55.000 8.55 0.00 33.88 3.74
1352 1416 1.152881 ATGCGAGGATCCCCAAAGC 60.153 57.895 8.55 7.80 33.88 3.51
1353 1417 0.882042 CGATGCGAGGATCCCCAAAG 60.882 60.000 8.55 0.00 33.88 2.77
1383 1447 3.797256 CAGAATTAATCAGTCCGGTCGTC 59.203 47.826 0.00 0.00 0.00 4.20
1387 1451 3.270877 GCACAGAATTAATCAGTCCGGT 58.729 45.455 0.00 0.00 0.00 5.28
1389 1453 2.285834 GCGCACAGAATTAATCAGTCCG 60.286 50.000 0.30 0.00 32.40 4.79
1390 1454 2.285834 CGCGCACAGAATTAATCAGTCC 60.286 50.000 8.75 0.00 0.00 3.85
1391 1455 2.847254 GCGCGCACAGAATTAATCAGTC 60.847 50.000 29.10 0.00 0.00 3.51
1392 1456 1.062587 GCGCGCACAGAATTAATCAGT 59.937 47.619 29.10 0.00 0.00 3.41
1395 1459 0.376852 TGGCGCGCACAGAATTAATC 59.623 50.000 34.42 11.16 0.00 1.75
1396 1460 0.808125 TTGGCGCGCACAGAATTAAT 59.192 45.000 34.42 0.00 0.00 1.40
1397 1461 0.167908 CTTGGCGCGCACAGAATTAA 59.832 50.000 34.42 10.86 0.00 1.40
1399 1463 2.562912 CTTGGCGCGCACAGAATT 59.437 55.556 34.42 0.00 0.00 2.17
1400 1464 4.107051 GCTTGGCGCGCACAGAAT 62.107 61.111 34.42 0.00 0.00 2.40
1414 1482 0.614979 TACTTCTCGAGGCCCTGCTT 60.615 55.000 13.56 0.00 0.00 3.91
1721 1791 3.309954 GGCATTGGTTCTATGACTCGAAC 59.690 47.826 0.00 0.00 38.95 3.95
1725 1811 3.281727 TGGGCATTGGTTCTATGACTC 57.718 47.619 0.00 0.00 31.48 3.36
1747 1833 2.679355 TGTGCATCAACACGTTTAGC 57.321 45.000 0.00 0.00 43.74 3.09
1752 1838 1.946081 TGACAATGTGCATCAACACGT 59.054 42.857 0.00 0.00 43.74 4.49
1753 1839 2.684754 TGACAATGTGCATCAACACG 57.315 45.000 0.00 0.00 43.74 4.49
1754 1840 4.801891 AGAATGACAATGTGCATCAACAC 58.198 39.130 0.00 0.00 41.10 3.32
1949 2042 2.165998 GAGAAGCTTGCCTTGATGGTT 58.834 47.619 2.10 0.00 38.35 3.67
1991 2084 1.064166 AGTCTGAATGAGGGCAATGGG 60.064 52.381 0.00 0.00 0.00 4.00
2049 2142 6.541969 CAACCAAGTCCAAACAACAATTTTC 58.458 36.000 0.00 0.00 0.00 2.29
2154 2247 8.918961 AACGATAATTGAACAAACACAAAGAA 57.081 26.923 0.00 0.00 0.00 2.52
2367 2465 7.302350 TCACGACATATTTATTTCACAGTGG 57.698 36.000 0.00 0.00 0.00 4.00
2579 2685 1.551452 GAGTGCCTGAGTAGACCACT 58.449 55.000 0.00 0.00 41.47 4.00
2752 2862 9.383519 GAAATGAGGTTTGTGAGATAGTATTCA 57.616 33.333 0.00 0.00 0.00 2.57
2815 2925 7.890127 TGAAATTCACTTTCTTCCATGGATAGT 59.110 33.333 17.06 13.52 43.14 2.12
2836 2946 5.831525 TGCAGATTCCATATGCTTCTGAAAT 59.168 36.000 22.05 5.36 46.98 2.17
2862 2972 5.120830 GCAACAGACATTTGAGTACCTAGTG 59.879 44.000 0.00 0.00 0.00 2.74
2911 3021 0.556747 ACCCCCTCGTAGATGTAGCT 59.443 55.000 0.00 0.00 33.89 3.32
2929 3039 5.702865 TCTGCATCAATTTGCTTCTGTAAC 58.297 37.500 3.90 0.00 43.18 2.50
2962 3072 3.751175 TCAAATGAGCTGAAACGGTAAGG 59.249 43.478 0.00 0.00 0.00 2.69
3050 3161 1.338200 ACTGGTTCTCGGACATGAAGC 60.338 52.381 0.00 0.00 40.02 3.86
3055 3175 2.904434 AGGTAAACTGGTTCTCGGACAT 59.096 45.455 0.00 0.00 0.00 3.06
3060 3180 4.217983 AGTCACTAGGTAAACTGGTTCTCG 59.782 45.833 0.00 0.00 39.08 4.04
3120 3240 4.530161 AGTAGATGGAAGAAGAACACAGCT 59.470 41.667 0.00 0.00 0.00 4.24
3195 3315 5.163612 GGAATCTTGAACCTGCTAAATGTCC 60.164 44.000 0.00 0.00 0.00 4.02
3224 3344 5.874810 CAGATTTTCAGTTTCCGAGTCCATA 59.125 40.000 0.00 0.00 0.00 2.74
3400 3520 4.657436 AACGGTCAAGTGGCAAAAATAA 57.343 36.364 0.00 0.00 0.00 1.40
3401 3521 4.098044 TGAAACGGTCAAGTGGCAAAAATA 59.902 37.500 0.00 0.00 31.51 1.40
3402 3522 3.118956 TGAAACGGTCAAGTGGCAAAAAT 60.119 39.130 0.00 0.00 31.51 1.82
3403 3523 2.231478 TGAAACGGTCAAGTGGCAAAAA 59.769 40.909 0.00 0.00 31.51 1.94
3442 3562 3.256136 CGTATGTAATCTCCTCCTCCCAC 59.744 52.174 0.00 0.00 0.00 4.61
3478 3604 4.588899 TCCAGGTCTTGATACCATGTTTG 58.411 43.478 0.00 0.00 42.40 2.93
3609 3735 6.161381 GCCATCAATTACCAAATGATCATCC 58.839 40.000 9.06 0.00 0.00 3.51
3696 3822 4.649674 GTGTCCTAACCAGACATCCAGATA 59.350 45.833 0.00 0.00 45.45 1.98
3730 3856 3.181510 GCATCCCGATTCTGTTGTACAAC 60.182 47.826 28.13 28.13 41.50 3.32
3815 3941 1.380302 CTGTTTCTCCTGGTGGGGG 59.620 63.158 0.00 0.00 36.75 5.40
3836 3962 1.387295 GCTCCCAATTGGCAGGTAGC 61.387 60.000 19.75 16.32 44.65 3.58
3851 3977 2.124983 TCGCTGATGCCAAGCTCC 60.125 61.111 0.00 0.00 35.36 4.70
4355 4481 0.681564 AGCTCTTCGTCCTCGTCCAT 60.682 55.000 0.00 0.00 38.33 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.