Multiple sequence alignment - TraesCS4A01G342500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G342500 chr4A 100.000 4514 0 0 1 4514 622239103 622234590 0.000000e+00 8336.0
1 TraesCS4A01G342500 chr5D 92.646 3889 210 37 54 3908 546686687 546690533 0.000000e+00 5528.0
2 TraesCS4A01G342500 chr5D 79.485 2330 444 23 1186 3486 241271666 241273990 0.000000e+00 1624.0
3 TraesCS4A01G342500 chr5D 91.935 124 8 2 4027 4149 546691005 546691127 6.000000e-39 172.0
4 TraesCS4A01G342500 chr5B 89.329 2577 237 24 974 3516 689997851 689995279 0.000000e+00 3201.0
5 TraesCS4A01G342500 chr5B 79.528 2330 443 22 1186 3486 262356923 262354599 0.000000e+00 1629.0
6 TraesCS4A01G342500 chr5B 91.758 364 23 6 113 469 689998642 689998279 2.420000e-137 499.0
7 TraesCS4A01G342500 chr5B 90.652 353 15 5 3676 4025 689995102 689994765 1.910000e-123 453.0
8 TraesCS4A01G342500 chr5B 94.094 254 13 1 4027 4280 689994564 689994313 7.080000e-103 385.0
9 TraesCS4A01G342500 chr5B 90.547 201 17 2 775 973 689998087 689997887 9.630000e-67 265.0
10 TraesCS4A01G342500 chr5B 87.349 166 15 3 521 686 689998283 689998124 7.710000e-43 185.0
11 TraesCS4A01G342500 chr5B 90.741 54 3 2 8 59 582158186 582158133 2.250000e-08 71.3
12 TraesCS4A01G342500 chr5B 93.617 47 2 1 11 57 27817266 27817221 8.100000e-08 69.4
13 TraesCS4A01G342500 chr5A 79.597 2333 434 26 1187 3486 310984590 310986913 0.000000e+00 1633.0
14 TraesCS4A01G342500 chr6D 92.188 192 13 2 4323 4514 429084332 429084143 2.070000e-68 270.0
15 TraesCS4A01G342500 chr6D 90.625 192 18 0 4323 4514 414626349 414626158 5.790000e-64 255.0
16 TraesCS4A01G342500 chr7B 91.710 193 14 2 4323 4514 387641880 387641689 2.680000e-67 267.0
17 TraesCS4A01G342500 chr7B 90.674 193 16 2 4323 4514 634277384 634277193 5.790000e-64 255.0
18 TraesCS4A01G342500 chr7B 90.674 193 17 1 4323 4514 663837633 663837825 5.790000e-64 255.0
19 TraesCS4A01G342500 chr7B 92.000 50 3 1 8 56 113163366 113163415 8.100000e-08 69.4
20 TraesCS4A01G342500 chr2D 91.710 193 13 3 4323 4514 459857063 459856873 9.630000e-67 265.0
21 TraesCS4A01G342500 chr2D 90.625 192 17 1 4323 4514 618294777 618294587 2.080000e-63 254.0
22 TraesCS4A01G342500 chr2D 100.000 39 0 0 19 57 118378490 118378452 6.260000e-09 73.1
23 TraesCS4A01G342500 chr3B 90.674 193 17 1 4323 4514 449806849 449806657 5.790000e-64 255.0
24 TraesCS4A01G342500 chr1B 90.306 196 17 2 4321 4514 458384346 458384151 5.790000e-64 255.0
25 TraesCS4A01G342500 chr3D 89.394 66 5 2 8 71 26655363 26655428 1.040000e-11 82.4
26 TraesCS4A01G342500 chr3A 89.394 66 5 2 8 71 36807757 36807822 1.040000e-11 82.4
27 TraesCS4A01G342500 chr3A 92.157 51 3 1 8 57 746355855 746355805 2.250000e-08 71.3
28 TraesCS4A01G342500 chr7A 92.157 51 3 1 8 57 33885859 33885809 2.250000e-08 71.3
29 TraesCS4A01G342500 chr6A 90.741 54 4 1 8 60 356112295 356112242 2.250000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G342500 chr4A 622234590 622239103 4513 True 8336.000000 8336 100.0000 1 4514 1 chr4A.!!$R1 4513
1 TraesCS4A01G342500 chr5D 546686687 546691127 4440 False 2850.000000 5528 92.2905 54 4149 2 chr5D.!!$F2 4095
2 TraesCS4A01G342500 chr5D 241271666 241273990 2324 False 1624.000000 1624 79.4850 1186 3486 1 chr5D.!!$F1 2300
3 TraesCS4A01G342500 chr5B 262354599 262356923 2324 True 1629.000000 1629 79.5280 1186 3486 1 chr5B.!!$R2 2300
4 TraesCS4A01G342500 chr5B 689994313 689998642 4329 True 831.333333 3201 90.6215 113 4280 6 chr5B.!!$R4 4167
5 TraesCS4A01G342500 chr5A 310984590 310986913 2323 False 1633.000000 1633 79.5970 1187 3486 1 chr5A.!!$F1 2299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 221 0.381801 GCATGTTTATCGGTGCAGGG 59.618 55.0 0.00 0.00 37.52 4.45 F
1137 1208 0.403655 TGCTTGCCACCACTTCCATA 59.596 50.0 0.00 0.00 0.00 2.74 F
1616 1711 0.611200 CCTACAACCCGGTCACATGA 59.389 55.0 0.00 0.00 0.00 3.07 F
2070 2165 0.964358 ATTGGACTGAAGGCTGCAGC 60.964 55.0 30.88 30.88 36.86 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1260 0.179097 GAGGATCCCAACGACAGAGC 60.179 60.000 8.55 0.0 0.00 4.09 R
2354 2449 0.391130 CACATCGGAGCGAGGGAAAA 60.391 55.000 0.00 0.0 42.06 2.29 R
3129 3239 1.218316 GTAGCCTGTGGTTCCTCGG 59.782 63.158 0.00 0.0 0.00 4.63 R
3729 3892 0.759959 TGCAACTACCCCGTCTTTCA 59.240 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.761575 ACTTGCAAAAACATCTTATATTGTGG 57.238 30.769 0.00 0.00 0.00 4.17
43 44 7.818930 ACTTGCAAAAACATCTTATATTGTGGG 59.181 33.333 0.00 0.00 0.00 4.61
44 45 7.473735 TGCAAAAACATCTTATATTGTGGGA 57.526 32.000 0.00 0.00 0.00 4.37
45 46 7.319646 TGCAAAAACATCTTATATTGTGGGAC 58.680 34.615 0.00 0.00 0.00 4.46
46 47 6.472163 GCAAAAACATCTTATATTGTGGGACG 59.528 38.462 0.00 0.00 0.00 4.79
47 48 6.693315 AAAACATCTTATATTGTGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
48 49 5.623956 AACATCTTATATTGTGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
49 50 5.215252 ACATCTTATATTGTGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
50 51 4.040461 ACATCTTATATTGTGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
51 52 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
52 53 1.724545 TATATTGTGGGACGGAGGGG 58.275 55.000 0.00 0.00 0.00 4.79
67 68 3.132111 CGGAGGGGGTATTTGGAAAAATG 59.868 47.826 0.00 0.00 0.00 2.32
111 112 3.684788 GCTCGTCTCATCTTGCCTTTTTA 59.315 43.478 0.00 0.00 0.00 1.52
187 189 3.580039 TCTGATATGACTGCATCTCCCA 58.420 45.455 0.00 0.00 35.94 4.37
210 212 7.170320 CCCATTTTCTATGCTTGCATGTTTATC 59.830 37.037 17.26 0.00 0.00 1.75
213 215 4.450976 TCTATGCTTGCATGTTTATCGGT 58.549 39.130 17.26 0.00 0.00 4.69
219 221 0.381801 GCATGTTTATCGGTGCAGGG 59.618 55.000 0.00 0.00 37.52 4.45
237 239 0.677288 GGTACCAAAAAGGGTGTGCC 59.323 55.000 7.15 0.00 42.39 5.01
240 242 1.506025 ACCAAAAAGGGTGTGCCATT 58.494 45.000 0.00 0.00 43.89 3.16
422 429 8.834004 TGTAGTAACCATTTACTAGGATCTGT 57.166 34.615 4.82 0.00 46.79 3.41
460 468 1.464997 GAGATCTCAAAACGGTGTGCC 59.535 52.381 18.11 0.00 0.00 5.01
462 470 1.880027 GATCTCAAAACGGTGTGCCTT 59.120 47.619 0.00 0.00 0.00 4.35
497 505 5.337009 CCTCCTGAAAAGGATGAAACAATGG 60.337 44.000 0.00 0.00 37.34 3.16
499 507 4.262549 CCTGAAAAGGATGAAACAATGGCA 60.263 41.667 0.00 0.00 0.00 4.92
529 538 3.273886 TGGTAGGAGGATCTTAGGACCAA 59.726 47.826 0.00 0.00 33.73 3.67
530 539 4.265124 TGGTAGGAGGATCTTAGGACCAAA 60.265 45.833 0.00 0.00 33.73 3.28
546 555 4.441356 GGACCAAAGCTGATCAGACTAGAG 60.441 50.000 27.04 14.85 0.00 2.43
586 597 3.963383 GTCATTTGGACAAGACACGTT 57.037 42.857 0.00 0.00 46.19 3.99
597 608 5.750067 GGACAAGACACGTTACAAAGTAGAA 59.250 40.000 0.00 0.00 0.00 2.10
648 659 8.184192 CGCAGTATTTTTCAACTTTCTCCATAT 58.816 33.333 0.00 0.00 0.00 1.78
662 673 2.221169 TCCATATTTGCAGCGGATGTC 58.779 47.619 0.00 0.00 0.00 3.06
692 708 9.037737 TGTATTATTCCACGTATTAGCAAGTTC 57.962 33.333 0.00 0.00 0.00 3.01
698 714 5.703592 TCCACGTATTAGCAAGTTCACATTT 59.296 36.000 0.00 0.00 0.00 2.32
737 753 8.796475 AGCAAGTTAACATCACAGTTATGAAAT 58.204 29.630 8.61 0.00 34.25 2.17
755 778 6.861065 TGAAATAGACTGTTTTGACCTGAC 57.139 37.500 0.00 0.00 0.00 3.51
759 782 4.329462 AGACTGTTTTGACCTGACTCTC 57.671 45.455 0.00 0.00 0.00 3.20
760 783 3.706594 AGACTGTTTTGACCTGACTCTCA 59.293 43.478 0.00 0.00 0.00 3.27
764 787 3.706594 TGTTTTGACCTGACTCTCACTCT 59.293 43.478 0.00 0.00 0.00 3.24
772 795 1.270826 TGACTCTCACTCTTGAAGCCG 59.729 52.381 0.00 0.00 0.00 5.52
891 917 7.402862 AGTTATAAGCCTGGTACATTGTCTTT 58.597 34.615 0.00 0.00 38.20 2.52
1019 1082 0.767375 ATGGGTGACACTGAAGCACT 59.233 50.000 5.39 0.00 33.25 4.40
1029 1092 2.414481 CACTGAAGCACTCTGTATGCAC 59.586 50.000 0.00 3.62 45.92 4.57
1030 1093 2.301296 ACTGAAGCACTCTGTATGCACT 59.699 45.455 0.00 0.00 45.92 4.40
1137 1208 0.403655 TGCTTGCCACCACTTCCATA 59.596 50.000 0.00 0.00 0.00 2.74
1174 1260 0.952497 AAGAGCTGTGGCACATGACG 60.952 55.000 22.35 10.59 44.52 4.35
1180 1266 1.669115 GTGGCACATGACGCTCTGT 60.669 57.895 13.86 0.00 44.52 3.41
1373 1459 3.480470 CTGTCCATGTCAAAAGGTCAGT 58.520 45.455 0.00 0.00 35.02 3.41
1389 1475 0.972134 CAGTCCTGACCTTGCAGAGA 59.028 55.000 0.00 0.00 38.14 3.10
1402 1488 3.851458 TGCAGAGAGATGGCAATATGT 57.149 42.857 0.00 0.00 34.05 2.29
1407 1493 4.755629 CAGAGAGATGGCAATATGTTCCTG 59.244 45.833 0.00 0.00 0.00 3.86
1423 1509 6.438186 TGTTCCTGATAGATTATGATGGCA 57.562 37.500 0.00 0.00 0.00 4.92
1459 1554 2.295909 GCTGGTGGCAACTTCACAAATA 59.704 45.455 3.27 0.00 41.35 1.40
1494 1589 5.774690 TCAGCTGTTGAATACTGGGAATTTT 59.225 36.000 14.67 0.00 31.34 1.82
1505 1600 5.921962 ACTGGGAATTTTATCTTGAAGGC 57.078 39.130 0.00 0.00 0.00 4.35
1578 1673 2.244651 GCCGACGCAACACTTCACT 61.245 57.895 0.00 0.00 34.03 3.41
1616 1711 0.611200 CCTACAACCCGGTCACATGA 59.389 55.000 0.00 0.00 0.00 3.07
1814 1909 1.820519 GAGTGATTTTGCTGATGGCCA 59.179 47.619 8.56 8.56 40.92 5.36
2070 2165 0.964358 ATTGGACTGAAGGCTGCAGC 60.964 55.000 30.88 30.88 36.86 5.25
2298 2393 1.003928 GGACGGACCTACCCAACAAAT 59.996 52.381 0.00 0.00 35.41 2.32
2346 2441 1.472480 CCTGCCAGGGTAAATGTTTCG 59.528 52.381 1.63 0.00 0.00 3.46
2349 2444 2.554893 TGCCAGGGTAAATGTTTCGAAC 59.445 45.455 0.00 0.00 0.00 3.95
2353 2448 4.036971 CCAGGGTAAATGTTTCGAACACAA 59.963 41.667 14.24 0.39 45.50 3.33
2354 2449 5.278758 CCAGGGTAAATGTTTCGAACACAAT 60.279 40.000 14.24 6.33 45.50 2.71
2398 2493 1.951209 TCCTGCACCACCTCATCTTA 58.049 50.000 0.00 0.00 0.00 2.10
2803 2907 4.406972 AGCTGAGTGTGATTGCTAGGATTA 59.593 41.667 0.00 0.00 31.71 1.75
2817 2921 7.373617 TGCTAGGATTAACCACATGAATCTA 57.626 36.000 0.00 0.00 42.04 1.98
2878 2982 4.485163 GCTGTTGGTTTGTGAATATGTCC 58.515 43.478 0.00 0.00 0.00 4.02
2973 3083 3.488778 TTAGGTGTTGCGAAAGGGTTA 57.511 42.857 0.00 0.00 0.00 2.85
2979 3089 1.736126 GTTGCGAAAGGGTTAGCCTAC 59.264 52.381 2.41 0.40 34.72 3.18
2985 3095 3.118371 CGAAAGGGTTAGCCTACCTTCAT 60.118 47.826 2.41 0.00 43.49 2.57
3009 3119 2.846206 TGAGTGCCTAGAATGGGTCATT 59.154 45.455 0.00 0.00 40.01 2.57
3079 3189 2.280628 CTAAGATCACCGACTTTGGGC 58.719 52.381 0.00 0.00 0.00 5.36
3104 3214 3.811497 GCAAAGTTACTAAACCGAGGTGT 59.189 43.478 0.00 0.00 36.15 4.16
3129 3239 3.438087 CCAACCAGAACACATCTCATGTC 59.562 47.826 0.00 0.00 42.70 3.06
3169 3279 0.689080 TGCTCCTGAGTGGATCTCCC 60.689 60.000 0.00 0.00 45.16 4.30
3214 3324 1.311859 CGTGTATAGCTACGGGGTCA 58.688 55.000 0.00 0.00 36.71 4.02
3348 3458 5.530543 GGAAGGAAGTGATGAATCTTGGATC 59.469 44.000 0.00 0.00 0.00 3.36
3408 3518 4.101585 AGCTATGTGCAGGCTAGAACATTA 59.898 41.667 13.46 3.20 45.94 1.90
3411 3521 6.650807 GCTATGTGCAGGCTAGAACATTAATA 59.349 38.462 13.46 0.00 42.31 0.98
3493 3603 7.152645 TGTTGTTCAGACTCTCCTAACATTAC 58.847 38.462 0.00 0.00 30.76 1.89
3518 3628 9.557061 ACATGAAGATGATAAGTCGTAGTAGTA 57.443 33.333 0.00 0.00 33.36 1.82
3729 3892 8.107095 TGGGACAGATTTAGTAAGCAATAAAGT 58.893 33.333 0.00 0.00 0.00 2.66
3747 3910 1.154197 GTGAAAGACGGGGTAGTTGC 58.846 55.000 0.00 0.00 0.00 4.17
3753 3916 0.321298 GACGGGGTAGTTGCACATGT 60.321 55.000 0.00 0.00 0.00 3.21
3769 3932 2.921821 CATGTGAGGCCATGTGTATGA 58.078 47.619 5.01 0.00 37.91 2.15
3773 3936 2.033801 GTGAGGCCATGTGTATGATTGC 59.966 50.000 5.01 0.00 36.36 3.56
3799 3962 6.801539 TCAGTGTGTTGTATCTTGATTTCC 57.198 37.500 0.00 0.00 0.00 3.13
3811 3974 5.505181 TCTTGATTTCCAGCCTTAAGAGT 57.495 39.130 3.36 0.00 0.00 3.24
3816 3979 7.687941 TGATTTCCAGCCTTAAGAGTAAAAG 57.312 36.000 3.36 0.00 0.00 2.27
3817 3980 6.659242 TGATTTCCAGCCTTAAGAGTAAAAGG 59.341 38.462 3.36 0.00 44.32 3.11
3818 3981 5.578157 TTCCAGCCTTAAGAGTAAAAGGT 57.422 39.130 3.36 0.00 43.55 3.50
3885 4048 3.756434 AGCTTTGTTCGCCTTTAATAGCA 59.244 39.130 0.00 0.00 0.00 3.49
3886 4049 4.399303 AGCTTTGTTCGCCTTTAATAGCAT 59.601 37.500 0.00 0.00 0.00 3.79
3887 4050 5.102313 GCTTTGTTCGCCTTTAATAGCATT 58.898 37.500 0.00 0.00 0.00 3.56
3888 4051 6.094881 AGCTTTGTTCGCCTTTAATAGCATTA 59.905 34.615 0.00 0.00 0.00 1.90
4025 4287 8.574196 TTGTTTCTCTAAAGTTTATGCAAAGC 57.426 30.769 0.00 0.00 0.00 3.51
4178 4775 0.884704 GCGGTCAAAGTCAGCTCCAA 60.885 55.000 0.00 0.00 0.00 3.53
4203 4800 4.742659 GCCACGTCATATCTTCTTCTTCTC 59.257 45.833 0.00 0.00 0.00 2.87
4204 4801 5.451242 GCCACGTCATATCTTCTTCTTCTCT 60.451 44.000 0.00 0.00 0.00 3.10
4238 4835 2.031258 TTTTGTCGAGCACCTTGTGA 57.969 45.000 0.00 0.00 35.23 3.58
4265 4862 0.609131 CGACCCTGCACATTTCCCTT 60.609 55.000 0.00 0.00 0.00 3.95
4273 4870 3.825611 CATTTCCCTTGCCGCCGG 61.826 66.667 0.00 0.00 0.00 6.13
4290 4887 3.081409 GCGGGGAGAGCAAGGGTA 61.081 66.667 0.00 0.00 34.19 3.69
4291 4888 2.901042 CGGGGAGAGCAAGGGTAC 59.099 66.667 0.00 0.00 0.00 3.34
4292 4889 1.686110 CGGGGAGAGCAAGGGTACT 60.686 63.158 0.00 0.00 0.00 2.73
4293 4890 1.677637 CGGGGAGAGCAAGGGTACTC 61.678 65.000 0.00 0.00 0.00 2.59
4294 4891 1.677637 GGGGAGAGCAAGGGTACTCG 61.678 65.000 0.00 0.00 37.99 4.18
4295 4892 0.683504 GGGAGAGCAAGGGTACTCGA 60.684 60.000 0.00 0.00 37.99 4.04
4296 4893 1.404843 GGAGAGCAAGGGTACTCGAT 58.595 55.000 0.00 0.00 37.99 3.59
4297 4894 1.067821 GGAGAGCAAGGGTACTCGATG 59.932 57.143 0.00 0.00 37.99 3.84
4298 4895 2.025155 GAGAGCAAGGGTACTCGATGA 58.975 52.381 5.84 0.00 37.99 2.92
4299 4896 2.028130 AGAGCAAGGGTACTCGATGAG 58.972 52.381 5.84 0.00 37.99 2.90
4300 4897 2.025155 GAGCAAGGGTACTCGATGAGA 58.975 52.381 5.84 0.00 33.32 3.27
4301 4898 2.625790 GAGCAAGGGTACTCGATGAGAT 59.374 50.000 5.84 0.00 33.32 2.75
4302 4899 2.625790 AGCAAGGGTACTCGATGAGATC 59.374 50.000 5.84 0.00 33.32 2.75
4303 4900 2.362397 GCAAGGGTACTCGATGAGATCA 59.638 50.000 5.84 0.00 33.32 2.92
4304 4901 3.551863 GCAAGGGTACTCGATGAGATCAG 60.552 52.174 5.84 0.00 33.32 2.90
4305 4902 2.235016 AGGGTACTCGATGAGATCAGC 58.765 52.381 0.00 0.00 33.32 4.26
4306 4903 1.271102 GGGTACTCGATGAGATCAGCC 59.729 57.143 0.00 1.40 33.32 4.85
4307 4904 1.957177 GGTACTCGATGAGATCAGCCA 59.043 52.381 0.00 0.00 33.32 4.75
4308 4905 2.030363 GGTACTCGATGAGATCAGCCAG 60.030 54.545 0.00 0.00 33.32 4.85
4309 4906 2.064434 ACTCGATGAGATCAGCCAGA 57.936 50.000 0.00 0.00 33.32 3.86
4310 4907 2.596346 ACTCGATGAGATCAGCCAGAT 58.404 47.619 0.00 0.00 40.48 2.90
4311 4908 3.760738 ACTCGATGAGATCAGCCAGATA 58.239 45.455 0.00 0.00 37.00 1.98
4312 4909 3.505680 ACTCGATGAGATCAGCCAGATAC 59.494 47.826 0.00 0.00 37.00 2.24
4313 4910 3.490348 TCGATGAGATCAGCCAGATACA 58.510 45.455 0.00 0.00 37.00 2.29
4314 4911 3.505293 TCGATGAGATCAGCCAGATACAG 59.495 47.826 0.00 0.00 37.00 2.74
4315 4912 3.587923 GATGAGATCAGCCAGATACAGC 58.412 50.000 0.00 0.00 37.00 4.40
4316 4913 1.339291 TGAGATCAGCCAGATACAGCG 59.661 52.381 0.00 0.00 37.00 5.18
4317 4914 1.611006 GAGATCAGCCAGATACAGCGA 59.389 52.381 0.00 0.00 37.00 4.93
4318 4915 1.339610 AGATCAGCCAGATACAGCGAC 59.660 52.381 0.00 0.00 37.00 5.19
4319 4916 0.031314 ATCAGCCAGATACAGCGACG 59.969 55.000 0.00 0.00 34.43 5.12
4320 4917 1.589993 CAGCCAGATACAGCGACGG 60.590 63.158 0.00 0.00 0.00 4.79
4321 4918 2.279517 GCCAGATACAGCGACGGG 60.280 66.667 0.00 0.00 0.00 5.28
4322 4919 3.077519 GCCAGATACAGCGACGGGT 62.078 63.158 0.00 0.00 0.00 5.28
4323 4920 1.515954 CCAGATACAGCGACGGGTT 59.484 57.895 0.00 0.00 0.00 4.11
4324 4921 0.108329 CCAGATACAGCGACGGGTTT 60.108 55.000 0.00 0.00 0.00 3.27
4325 4922 1.674817 CCAGATACAGCGACGGGTTTT 60.675 52.381 0.00 0.00 0.00 2.43
4326 4923 2.073816 CAGATACAGCGACGGGTTTTT 58.926 47.619 0.00 0.00 0.00 1.94
4327 4924 2.093783 CAGATACAGCGACGGGTTTTTC 59.906 50.000 0.00 0.00 0.00 2.29
4328 4925 2.028385 AGATACAGCGACGGGTTTTTCT 60.028 45.455 0.00 0.00 0.00 2.52
4329 4926 2.243602 TACAGCGACGGGTTTTTCTT 57.756 45.000 0.00 0.00 0.00 2.52
4330 4927 2.243602 ACAGCGACGGGTTTTTCTTA 57.756 45.000 0.00 0.00 0.00 2.10
4331 4928 2.563702 ACAGCGACGGGTTTTTCTTAA 58.436 42.857 0.00 0.00 0.00 1.85
4332 4929 2.944349 ACAGCGACGGGTTTTTCTTAAA 59.056 40.909 0.00 0.00 0.00 1.52
4333 4930 3.242837 ACAGCGACGGGTTTTTCTTAAAC 60.243 43.478 0.00 0.00 0.00 2.01
4334 4931 2.944349 AGCGACGGGTTTTTCTTAAACA 59.056 40.909 0.00 0.00 32.04 2.83
4335 4932 3.038017 GCGACGGGTTTTTCTTAAACAC 58.962 45.455 0.00 0.00 32.04 3.32
4336 4933 3.487209 GCGACGGGTTTTTCTTAAACACA 60.487 43.478 0.00 0.00 33.32 3.72
4337 4934 4.276460 CGACGGGTTTTTCTTAAACACAG 58.724 43.478 3.84 0.00 33.32 3.66
4338 4935 4.201841 CGACGGGTTTTTCTTAAACACAGT 60.202 41.667 3.84 2.70 33.32 3.55
4339 4936 5.006552 CGACGGGTTTTTCTTAAACACAGTA 59.993 40.000 3.84 0.00 33.32 2.74
4340 4937 6.122850 ACGGGTTTTTCTTAAACACAGTAC 57.877 37.500 3.84 0.00 33.32 2.73
4341 4938 5.647225 ACGGGTTTTTCTTAAACACAGTACA 59.353 36.000 0.00 0.00 33.32 2.90
4342 4939 6.183360 ACGGGTTTTTCTTAAACACAGTACAG 60.183 38.462 0.00 0.00 33.32 2.74
4343 4940 6.037391 CGGGTTTTTCTTAAACACAGTACAGA 59.963 38.462 0.00 0.00 33.32 3.41
4344 4941 7.255001 CGGGTTTTTCTTAAACACAGTACAGAT 60.255 37.037 0.00 0.00 33.32 2.90
4345 4942 7.860872 GGGTTTTTCTTAAACACAGTACAGATG 59.139 37.037 0.00 0.00 33.90 2.90
4346 4943 7.378728 GGTTTTTCTTAAACACAGTACAGATGC 59.621 37.037 0.00 0.00 32.04 3.91
4347 4944 7.561021 TTTTCTTAAACACAGTACAGATGCA 57.439 32.000 0.00 0.00 0.00 3.96
4348 4945 7.561021 TTTCTTAAACACAGTACAGATGCAA 57.439 32.000 0.00 0.00 0.00 4.08
4349 4946 7.744087 TTCTTAAACACAGTACAGATGCAAT 57.256 32.000 0.00 0.00 0.00 3.56
4350 4947 7.364522 TCTTAAACACAGTACAGATGCAATC 57.635 36.000 0.00 0.00 46.04 2.67
4364 4961 4.950926 GATGCAATCGCTCATATACACAC 58.049 43.478 0.00 0.00 39.64 3.82
4365 4962 2.794350 TGCAATCGCTCATATACACACG 59.206 45.455 0.00 0.00 39.64 4.49
4366 4963 2.410262 GCAATCGCTCATATACACACGC 60.410 50.000 0.00 0.00 34.30 5.34
4367 4964 2.793278 ATCGCTCATATACACACGCA 57.207 45.000 0.00 0.00 0.00 5.24
4368 4965 2.793278 TCGCTCATATACACACGCAT 57.207 45.000 0.00 0.00 0.00 4.73
4369 4966 3.907894 TCGCTCATATACACACGCATA 57.092 42.857 0.00 0.00 0.00 3.14
4370 4967 3.561503 TCGCTCATATACACACGCATAC 58.438 45.455 0.00 0.00 0.00 2.39
4371 4968 3.003897 TCGCTCATATACACACGCATACA 59.996 43.478 0.00 0.00 0.00 2.29
4372 4969 3.119628 CGCTCATATACACACGCATACAC 59.880 47.826 0.00 0.00 0.00 2.90
4373 4970 4.299155 GCTCATATACACACGCATACACT 58.701 43.478 0.00 0.00 0.00 3.55
4374 4971 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
4375 4972 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
4376 4973 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
4377 4974 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
4378 4975 0.679505 ACACACGCATACACTCACCT 59.320 50.000 0.00 0.00 0.00 4.00
4379 4976 1.336887 ACACACGCATACACTCACCTC 60.337 52.381 0.00 0.00 0.00 3.85
4380 4977 1.067565 CACACGCATACACTCACCTCT 60.068 52.381 0.00 0.00 0.00 3.69
4381 4978 2.163613 CACACGCATACACTCACCTCTA 59.836 50.000 0.00 0.00 0.00 2.43
4382 4979 3.024547 ACACGCATACACTCACCTCTAT 58.975 45.455 0.00 0.00 0.00 1.98
4383 4980 4.036380 CACACGCATACACTCACCTCTATA 59.964 45.833 0.00 0.00 0.00 1.31
4384 4981 4.643334 ACACGCATACACTCACCTCTATAA 59.357 41.667 0.00 0.00 0.00 0.98
4385 4982 5.126545 ACACGCATACACTCACCTCTATAAA 59.873 40.000 0.00 0.00 0.00 1.40
4386 4983 5.459107 CACGCATACACTCACCTCTATAAAC 59.541 44.000 0.00 0.00 0.00 2.01
4387 4984 4.675565 CGCATACACTCACCTCTATAAACG 59.324 45.833 0.00 0.00 0.00 3.60
4388 4985 4.444720 GCATACACTCACCTCTATAAACGC 59.555 45.833 0.00 0.00 0.00 4.84
4389 4986 5.588240 CATACACTCACCTCTATAAACGCA 58.412 41.667 0.00 0.00 0.00 5.24
4390 4987 3.846360 ACACTCACCTCTATAAACGCAC 58.154 45.455 0.00 0.00 0.00 5.34
4391 4988 3.257375 ACACTCACCTCTATAAACGCACA 59.743 43.478 0.00 0.00 0.00 4.57
4392 4989 3.612860 CACTCACCTCTATAAACGCACAC 59.387 47.826 0.00 0.00 0.00 3.82
4393 4990 3.257375 ACTCACCTCTATAAACGCACACA 59.743 43.478 0.00 0.00 0.00 3.72
4394 4991 3.581755 TCACCTCTATAAACGCACACAC 58.418 45.455 0.00 0.00 0.00 3.82
4395 4992 2.344441 CACCTCTATAAACGCACACACG 59.656 50.000 0.00 0.00 39.50 4.49
4396 4993 1.323534 CCTCTATAAACGCACACACGC 59.676 52.381 0.00 0.00 36.19 5.34
4397 4994 1.989864 CTCTATAAACGCACACACGCA 59.010 47.619 0.00 0.00 36.19 5.24
4398 4995 1.722464 TCTATAAACGCACACACGCAC 59.278 47.619 0.00 0.00 36.19 5.34
4399 4996 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
4400 4997 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
4401 4998 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
4402 4999 4.830765 ACGCACACACGCACACCT 62.831 61.111 0.00 0.00 36.19 4.00
4403 5000 3.572539 CGCACACACGCACACCTT 61.573 61.111 0.00 0.00 0.00 3.50
4404 5001 2.241190 CGCACACACGCACACCTTA 61.241 57.895 0.00 0.00 0.00 2.69
4405 5002 1.565156 CGCACACACGCACACCTTAT 61.565 55.000 0.00 0.00 0.00 1.73
4406 5003 0.165944 GCACACACGCACACCTTATC 59.834 55.000 0.00 0.00 0.00 1.75
4407 5004 0.796312 CACACACGCACACCTTATCC 59.204 55.000 0.00 0.00 0.00 2.59
4408 5005 0.321298 ACACACGCACACCTTATCCC 60.321 55.000 0.00 0.00 0.00 3.85
4409 5006 0.036388 CACACGCACACCTTATCCCT 60.036 55.000 0.00 0.00 0.00 4.20
4410 5007 1.206132 CACACGCACACCTTATCCCTA 59.794 52.381 0.00 0.00 0.00 3.53
4411 5008 2.116238 ACACGCACACCTTATCCCTAT 58.884 47.619 0.00 0.00 0.00 2.57
4412 5009 2.158957 ACACGCACACCTTATCCCTATG 60.159 50.000 0.00 0.00 0.00 2.23
4413 5010 2.102420 CACGCACACCTTATCCCTATGA 59.898 50.000 0.00 0.00 0.00 2.15
4414 5011 2.365617 ACGCACACCTTATCCCTATGAG 59.634 50.000 0.00 0.00 0.00 2.90
4415 5012 2.772287 GCACACCTTATCCCTATGAGC 58.228 52.381 0.00 0.00 0.00 4.26
4416 5013 2.104792 GCACACCTTATCCCTATGAGCA 59.895 50.000 0.00 0.00 0.00 4.26
4417 5014 3.733337 CACACCTTATCCCTATGAGCAC 58.267 50.000 0.00 0.00 0.00 4.40
4418 5015 2.706190 ACACCTTATCCCTATGAGCACC 59.294 50.000 0.00 0.00 0.00 5.01
4419 5016 2.975489 CACCTTATCCCTATGAGCACCT 59.025 50.000 0.00 0.00 0.00 4.00
4420 5017 3.392616 CACCTTATCCCTATGAGCACCTT 59.607 47.826 0.00 0.00 0.00 3.50
4421 5018 3.648545 ACCTTATCCCTATGAGCACCTTC 59.351 47.826 0.00 0.00 0.00 3.46
4422 5019 3.306364 CCTTATCCCTATGAGCACCTTCG 60.306 52.174 0.00 0.00 0.00 3.79
4423 5020 2.088104 ATCCCTATGAGCACCTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
4424 5021 1.860641 TCCCTATGAGCACCTTCGAA 58.139 50.000 0.00 0.00 0.00 3.71
4425 5022 2.184533 TCCCTATGAGCACCTTCGAAA 58.815 47.619 0.00 0.00 0.00 3.46
4426 5023 2.569853 TCCCTATGAGCACCTTCGAAAA 59.430 45.455 0.00 0.00 0.00 2.29
4427 5024 3.008594 TCCCTATGAGCACCTTCGAAAAA 59.991 43.478 0.00 0.00 0.00 1.94
4428 5025 3.127030 CCCTATGAGCACCTTCGAAAAAC 59.873 47.826 0.00 0.00 0.00 2.43
4429 5026 4.003648 CCTATGAGCACCTTCGAAAAACT 58.996 43.478 0.00 0.00 0.00 2.66
4430 5027 3.904136 ATGAGCACCTTCGAAAAACTG 57.096 42.857 0.00 0.00 0.00 3.16
4431 5028 2.912771 TGAGCACCTTCGAAAAACTGA 58.087 42.857 0.00 0.00 0.00 3.41
4432 5029 2.872245 TGAGCACCTTCGAAAAACTGAG 59.128 45.455 0.00 0.00 0.00 3.35
4433 5030 1.604278 AGCACCTTCGAAAAACTGAGC 59.396 47.619 0.00 0.00 0.00 4.26
4434 5031 1.604278 GCACCTTCGAAAAACTGAGCT 59.396 47.619 0.00 0.00 0.00 4.09
4435 5032 2.603173 GCACCTTCGAAAAACTGAGCTG 60.603 50.000 0.00 0.00 0.00 4.24
4436 5033 2.031682 CACCTTCGAAAAACTGAGCTGG 60.032 50.000 0.00 0.00 0.00 4.85
4437 5034 1.068954 CCTTCGAAAAACTGAGCTGGC 60.069 52.381 0.00 0.00 0.00 4.85
4438 5035 1.603802 CTTCGAAAAACTGAGCTGGCA 59.396 47.619 0.00 0.00 0.00 4.92
4439 5036 1.896220 TCGAAAAACTGAGCTGGCAT 58.104 45.000 0.00 0.00 0.00 4.40
4440 5037 3.052455 TCGAAAAACTGAGCTGGCATA 57.948 42.857 0.00 0.00 0.00 3.14
4441 5038 3.609853 TCGAAAAACTGAGCTGGCATAT 58.390 40.909 0.00 0.00 0.00 1.78
4442 5039 3.623060 TCGAAAAACTGAGCTGGCATATC 59.377 43.478 0.00 0.00 0.00 1.63
4443 5040 3.374988 CGAAAAACTGAGCTGGCATATCA 59.625 43.478 0.00 0.00 0.00 2.15
4444 5041 4.036027 CGAAAAACTGAGCTGGCATATCAT 59.964 41.667 0.00 0.00 0.00 2.45
4445 5042 5.511234 AAAAACTGAGCTGGCATATCATC 57.489 39.130 0.00 0.00 0.00 2.92
4446 5043 4.434545 AAACTGAGCTGGCATATCATCT 57.565 40.909 0.00 0.00 0.00 2.90
4447 5044 4.434545 AACTGAGCTGGCATATCATCTT 57.565 40.909 0.00 0.00 0.00 2.40
4448 5045 3.741249 ACTGAGCTGGCATATCATCTTG 58.259 45.455 0.00 0.00 0.00 3.02
4449 5046 3.390311 ACTGAGCTGGCATATCATCTTGA 59.610 43.478 0.00 0.00 0.00 3.02
4450 5047 4.141551 ACTGAGCTGGCATATCATCTTGAA 60.142 41.667 0.00 0.00 0.00 2.69
4451 5048 4.784177 TGAGCTGGCATATCATCTTGAAA 58.216 39.130 0.00 0.00 0.00 2.69
4452 5049 5.382616 TGAGCTGGCATATCATCTTGAAAT 58.617 37.500 0.00 0.00 0.00 2.17
4453 5050 5.831525 TGAGCTGGCATATCATCTTGAAATT 59.168 36.000 0.00 0.00 0.00 1.82
4454 5051 6.322969 TGAGCTGGCATATCATCTTGAAATTT 59.677 34.615 0.00 0.00 0.00 1.82
4455 5052 7.503230 TGAGCTGGCATATCATCTTGAAATTTA 59.497 33.333 0.00 0.00 0.00 1.40
4456 5053 7.655490 AGCTGGCATATCATCTTGAAATTTAC 58.345 34.615 0.00 0.00 0.00 2.01
4457 5054 6.580041 GCTGGCATATCATCTTGAAATTTACG 59.420 38.462 0.00 0.00 0.00 3.18
4458 5055 7.520453 GCTGGCATATCATCTTGAAATTTACGA 60.520 37.037 0.00 0.00 0.00 3.43
4459 5056 8.219546 TGGCATATCATCTTGAAATTTACGAA 57.780 30.769 0.00 0.00 0.00 3.85
4460 5057 8.344831 TGGCATATCATCTTGAAATTTACGAAG 58.655 33.333 0.00 0.00 0.00 3.79
4462 5059 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
4474 5071 2.959275 CGAAGTCATCGTAGGCACC 58.041 57.895 0.00 0.00 46.52 5.01
4475 5072 0.456221 CGAAGTCATCGTAGGCACCT 59.544 55.000 0.00 0.00 46.52 4.00
4476 5073 1.534175 CGAAGTCATCGTAGGCACCTC 60.534 57.143 0.00 0.00 46.52 3.85
4477 5074 0.456221 AAGTCATCGTAGGCACCTCG 59.544 55.000 0.00 0.00 0.00 4.63
4478 5075 0.680280 AGTCATCGTAGGCACCTCGT 60.680 55.000 0.00 0.00 0.00 4.18
4479 5076 0.248539 GTCATCGTAGGCACCTCGTC 60.249 60.000 0.00 0.00 0.00 4.20
4480 5077 1.298413 CATCGTAGGCACCTCGTCG 60.298 63.158 0.00 0.00 0.00 5.12
4481 5078 1.748122 ATCGTAGGCACCTCGTCGT 60.748 57.895 0.00 0.00 0.00 4.34
4482 5079 1.712977 ATCGTAGGCACCTCGTCGTC 61.713 60.000 0.00 0.00 0.00 4.20
4483 5080 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
4484 5081 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
4485 5082 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
4509 5106 5.532025 GGAACGTTTCCTCTTACTGAATG 57.468 43.478 0.46 0.00 46.57 2.67
4510 5107 4.142881 GGAACGTTTCCTCTTACTGAATGC 60.143 45.833 0.46 0.00 46.57 3.56
4511 5108 2.993899 ACGTTTCCTCTTACTGAATGCG 59.006 45.455 0.00 0.00 0.00 4.73
4512 5109 2.222819 CGTTTCCTCTTACTGAATGCGC 60.223 50.000 0.00 0.00 0.00 6.09
4513 5110 2.742053 GTTTCCTCTTACTGAATGCGCA 59.258 45.455 14.96 14.96 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.206870 CCACAATATAAGATGTTTTTGCAAGTT 57.793 29.630 0.00 0.00 0.00 2.66
17 18 7.818930 CCCACAATATAAGATGTTTTTGCAAGT 59.181 33.333 0.00 0.00 0.00 3.16
18 19 8.034215 TCCCACAATATAAGATGTTTTTGCAAG 58.966 33.333 0.00 0.00 0.00 4.01
19 20 7.816995 GTCCCACAATATAAGATGTTTTTGCAA 59.183 33.333 0.00 0.00 0.00 4.08
20 21 7.319646 GTCCCACAATATAAGATGTTTTTGCA 58.680 34.615 0.00 0.00 0.00 4.08
21 22 6.472163 CGTCCCACAATATAAGATGTTTTTGC 59.528 38.462 0.00 0.00 0.00 3.68
22 23 6.972328 CCGTCCCACAATATAAGATGTTTTTG 59.028 38.462 0.00 0.00 0.00 2.44
23 24 6.887545 TCCGTCCCACAATATAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
24 25 6.419791 TCCGTCCCACAATATAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
25 26 5.996644 TCCGTCCCACAATATAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
26 27 5.454755 CCTCCGTCCCACAATATAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
27 28 4.040461 CCTCCGTCCCACAATATAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
28 29 4.563580 CCCTCCGTCCCACAATATAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
29 30 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
30 31 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
31 32 2.038557 CCCCTCCGTCCCACAATATAAG 59.961 54.545 0.00 0.00 0.00 1.73
32 33 2.051692 CCCCTCCGTCCCACAATATAA 58.948 52.381 0.00 0.00 0.00 0.98
33 34 1.724545 CCCCTCCGTCCCACAATATA 58.275 55.000 0.00 0.00 0.00 0.86
34 35 1.060163 CCCCCTCCGTCCCACAATAT 61.060 60.000 0.00 0.00 0.00 1.28
35 36 1.691337 CCCCCTCCGTCCCACAATA 60.691 63.158 0.00 0.00 0.00 1.90
36 37 2.480255 TACCCCCTCCGTCCCACAAT 62.480 60.000 0.00 0.00 0.00 2.71
37 38 2.480255 ATACCCCCTCCGTCCCACAA 62.480 60.000 0.00 0.00 0.00 3.33
38 39 2.480255 AATACCCCCTCCGTCCCACA 62.480 60.000 0.00 0.00 0.00 4.17
39 40 1.276859 AAATACCCCCTCCGTCCCAC 61.277 60.000 0.00 0.00 0.00 4.61
40 41 1.083329 AAATACCCCCTCCGTCCCA 59.917 57.895 0.00 0.00 0.00 4.37
41 42 1.530283 CAAATACCCCCTCCGTCCC 59.470 63.158 0.00 0.00 0.00 4.46
42 43 0.984432 TCCAAATACCCCCTCCGTCC 60.984 60.000 0.00 0.00 0.00 4.79
43 44 0.913924 TTCCAAATACCCCCTCCGTC 59.086 55.000 0.00 0.00 0.00 4.79
44 45 1.374572 TTTCCAAATACCCCCTCCGT 58.625 50.000 0.00 0.00 0.00 4.69
45 46 2.517998 TTTTCCAAATACCCCCTCCG 57.482 50.000 0.00 0.00 0.00 4.63
46 47 3.454447 CCATTTTTCCAAATACCCCCTCC 59.546 47.826 0.00 0.00 30.90 4.30
47 48 4.101114 ACCATTTTTCCAAATACCCCCTC 58.899 43.478 0.00 0.00 30.90 4.30
48 49 4.154802 ACCATTTTTCCAAATACCCCCT 57.845 40.909 0.00 0.00 30.90 4.79
49 50 4.919774 AACCATTTTTCCAAATACCCCC 57.080 40.909 0.00 0.00 30.90 5.40
50 51 7.247456 TCTAAACCATTTTTCCAAATACCCC 57.753 36.000 0.00 0.00 30.90 4.95
51 52 9.733556 AATTCTAAACCATTTTTCCAAATACCC 57.266 29.630 0.00 0.00 30.90 3.69
67 68 7.640240 CGAGCAGTAGCATAAAAATTCTAAACC 59.360 37.037 0.00 0.00 45.49 3.27
79 80 3.885901 AGATGAGACGAGCAGTAGCATAA 59.114 43.478 0.00 0.00 45.49 1.90
83 84 2.458951 CAAGATGAGACGAGCAGTAGC 58.541 52.381 0.00 0.00 42.56 3.58
84 85 2.458951 GCAAGATGAGACGAGCAGTAG 58.541 52.381 0.00 0.00 0.00 2.57
187 189 6.919662 CCGATAAACATGCAAGCATAGAAAAT 59.080 34.615 7.29 0.00 34.91 1.82
210 212 0.596082 CTTTTTGGTACCCTGCACCG 59.404 55.000 10.07 0.00 39.04 4.94
213 215 0.558712 ACCCTTTTTGGTACCCTGCA 59.441 50.000 10.07 0.00 36.67 4.41
219 221 1.404843 TGGCACACCCTTTTTGGTAC 58.595 50.000 0.00 0.00 36.67 3.34
385 392 6.801718 ATGGTTACTACAGTGTTAGGCATA 57.198 37.500 0.00 0.00 0.00 3.14
422 429 2.897326 TCTCAAGACATTCAAGGTCCGA 59.103 45.455 0.00 0.00 35.89 4.55
460 468 8.705594 TCCTTTTCAGGAGGTATAACTATGAAG 58.294 37.037 14.38 7.29 45.20 3.02
497 505 3.906720 TCCTCCTACCAGTACAAATGC 57.093 47.619 0.00 0.00 0.00 3.56
499 507 6.555360 CCTAAGATCCTCCTACCAGTACAAAT 59.445 42.308 0.00 0.00 0.00 2.32
529 538 6.849085 TTTCTTCTCTAGTCTGATCAGCTT 57.151 37.500 18.36 10.54 0.00 3.74
530 539 6.627953 GCTTTTCTTCTCTAGTCTGATCAGCT 60.628 42.308 18.36 18.84 0.00 4.24
584 595 5.161358 GCCCATTTGCTTCTACTTTGTAAC 58.839 41.667 0.00 0.00 0.00 2.50
586 597 4.402829 TGCCCATTTGCTTCTACTTTGTA 58.597 39.130 0.00 0.00 0.00 2.41
597 608 2.102578 GTACCAAGATGCCCATTTGCT 58.897 47.619 0.00 0.00 0.00 3.91
662 673 6.144886 TGCTAATACGTGGAATAATACAAGCG 59.855 38.462 0.00 0.00 0.00 4.68
737 753 4.893524 TGAGAGTCAGGTCAAAACAGTCTA 59.106 41.667 0.00 0.00 0.00 2.59
738 754 3.706594 TGAGAGTCAGGTCAAAACAGTCT 59.293 43.478 0.00 0.00 0.00 3.24
739 755 3.804873 GTGAGAGTCAGGTCAAAACAGTC 59.195 47.826 0.00 0.00 0.00 3.51
740 756 3.452627 AGTGAGAGTCAGGTCAAAACAGT 59.547 43.478 0.00 0.00 0.00 3.55
741 757 4.054671 GAGTGAGAGTCAGGTCAAAACAG 58.945 47.826 0.00 0.00 0.00 3.16
742 758 3.706594 AGAGTGAGAGTCAGGTCAAAACA 59.293 43.478 0.00 0.00 0.00 2.83
743 759 4.329462 AGAGTGAGAGTCAGGTCAAAAC 57.671 45.455 0.00 0.00 0.00 2.43
744 760 4.405680 TCAAGAGTGAGAGTCAGGTCAAAA 59.594 41.667 0.00 0.00 0.00 2.44
755 778 0.108424 CCCGGCTTCAAGAGTGAGAG 60.108 60.000 0.00 0.00 34.49 3.20
759 782 0.250295 TTGACCCGGCTTCAAGAGTG 60.250 55.000 11.62 0.00 0.00 3.51
760 783 0.693049 ATTGACCCGGCTTCAAGAGT 59.307 50.000 18.42 0.00 36.44 3.24
764 787 0.404040 AGGAATTGACCCGGCTTCAA 59.596 50.000 16.54 16.54 37.38 2.69
772 795 5.535030 ACTTAACACTCAAAGGAATTGACCC 59.465 40.000 0.00 0.00 43.08 4.46
1019 1082 5.939764 ATTTCTAGGTGAGTGCATACAGA 57.060 39.130 0.00 0.00 0.00 3.41
1164 1247 2.447887 CGACAGAGCGTCATGTGCC 61.448 63.158 8.70 2.32 45.70 5.01
1174 1260 0.179097 GAGGATCCCAACGACAGAGC 60.179 60.000 8.55 0.00 0.00 4.09
1180 1266 1.693627 GCTAGAGAGGATCCCAACGA 58.306 55.000 8.55 0.00 33.66 3.85
1373 1459 1.829849 CATCTCTCTGCAAGGTCAGGA 59.170 52.381 0.00 0.00 34.91 3.86
1389 1475 6.692849 TCTATCAGGAACATATTGCCATCT 57.307 37.500 0.00 0.00 0.00 2.90
1402 1488 6.438186 TGTGCCATCATAATCTATCAGGAA 57.562 37.500 0.00 0.00 0.00 3.36
1423 1509 0.390124 CCAGCTTGCCACACAATTGT 59.610 50.000 4.92 4.92 37.72 2.71
1425 1511 0.390124 CACCAGCTTGCCACACAATT 59.610 50.000 0.00 0.00 37.72 2.32
1426 1512 1.466025 CCACCAGCTTGCCACACAAT 61.466 55.000 0.00 0.00 37.72 2.71
1494 1589 6.385759 TCTTACCATTGGTAGCCTTCAAGATA 59.614 38.462 14.97 0.00 39.52 1.98
1505 1600 6.061441 TGCCATATTGTCTTACCATTGGTAG 58.939 40.000 14.97 9.98 39.52 3.18
1578 1673 4.351874 AGGCACTAACTTTGTAGAAGCA 57.648 40.909 0.00 0.00 36.02 3.91
1616 1711 8.262227 TGAAACGGAATATGTAGTTACCAGAAT 58.738 33.333 0.00 0.00 0.00 2.40
1759 1854 3.701040 CCATTACTGTCCAAAATCCCCAG 59.299 47.826 0.00 0.00 0.00 4.45
1839 1934 2.852130 AGCCTTCTCTTAATCCCTGGT 58.148 47.619 0.00 0.00 0.00 4.00
2070 2165 6.105657 TCACATGTTATGTTGACAATAGCG 57.894 37.500 0.00 0.00 42.70 4.26
2298 2393 3.056891 TGAGATATATTGTCCGCGCATCA 60.057 43.478 8.75 0.00 0.00 3.07
2346 2441 2.095212 GGAGCGAGGGAAAATTGTGTTC 60.095 50.000 0.00 0.00 0.00 3.18
2349 2444 0.447801 CGGAGCGAGGGAAAATTGTG 59.552 55.000 0.00 0.00 0.00 3.33
2353 2448 0.541863 ACATCGGAGCGAGGGAAAAT 59.458 50.000 0.00 0.00 42.06 1.82
2354 2449 0.391130 CACATCGGAGCGAGGGAAAA 60.391 55.000 0.00 0.00 42.06 2.29
2398 2493 4.463539 TGGTATGCTCATTTGATTGCAGTT 59.536 37.500 0.00 0.00 38.87 3.16
2613 2717 8.085296 ACAAGTTCTCTGTAACTGTATCTTCTG 58.915 37.037 0.00 0.00 39.62 3.02
2803 2907 7.935755 CCATATTCTCACTAGATTCATGTGGTT 59.064 37.037 0.00 0.00 30.11 3.67
2817 2921 4.675063 ACAAAACCCCCATATTCTCACT 57.325 40.909 0.00 0.00 0.00 3.41
2878 2982 1.950828 CTAGCCAGTGAGCCATTCTG 58.049 55.000 0.00 0.00 0.00 3.02
2973 3083 2.158842 GCACTCATGATGAAGGTAGGCT 60.159 50.000 0.00 0.00 0.00 4.58
2979 3089 4.412796 TTCTAGGCACTCATGATGAAGG 57.587 45.455 0.00 0.00 41.75 3.46
2985 3095 2.435805 GACCCATTCTAGGCACTCATGA 59.564 50.000 0.00 0.00 41.75 3.07
3009 3119 1.414550 TCGGGTTTCACATCACAGTGA 59.585 47.619 5.50 5.50 46.12 3.41
3079 3189 3.435671 CCTCGGTTTAGTAACTTTGCCAG 59.564 47.826 0.00 0.00 34.59 4.85
3104 3214 2.437651 TGAGATGTGTTCTGGTTGGACA 59.562 45.455 0.00 0.00 33.74 4.02
3129 3239 1.218316 GTAGCCTGTGGTTCCTCGG 59.782 63.158 0.00 0.00 0.00 4.63
3348 3458 3.557577 TTGCAGTCCACAAATTCATCG 57.442 42.857 0.00 0.00 0.00 3.84
3408 3518 7.982354 TCCAAACAAGAAACGACCAATTTTATT 59.018 29.630 0.00 0.00 0.00 1.40
3411 3521 5.725362 TCCAAACAAGAAACGACCAATTTT 58.275 33.333 0.00 0.00 0.00 1.82
3487 3597 9.684448 CTACGACTTATCATCTTCATGTAATGT 57.316 33.333 0.00 0.00 46.80 2.71
3694 3854 6.374417 ACTAAATCTGTCCCACACTTATGT 57.626 37.500 0.00 0.00 40.80 2.29
3729 3892 0.759959 TGCAACTACCCCGTCTTTCA 59.240 50.000 0.00 0.00 0.00 2.69
3753 3916 2.300433 GCAATCATACACATGGCCTCA 58.700 47.619 3.32 0.00 32.61 3.86
3764 3927 4.156556 ACAACACACTGATGGCAATCATAC 59.843 41.667 3.68 0.00 41.97 2.39
3769 3932 4.592942 AGATACAACACACTGATGGCAAT 58.407 39.130 0.00 0.00 0.00 3.56
3773 3936 6.748333 AATCAAGATACAACACACTGATGG 57.252 37.500 0.00 0.00 0.00 3.51
3799 3962 4.652822 ACCACCTTTTACTCTTAAGGCTG 58.347 43.478 1.85 0.00 43.84 4.85
3954 4203 8.353684 ACCGTAAAGTCTACATTATCTCTGATG 58.646 37.037 0.00 0.00 0.00 3.07
4104 4701 4.899352 GGATACATCAGCCCTATGTCTT 57.101 45.455 0.00 0.00 38.49 3.01
4178 4775 4.679373 AGAAGAAGATATGACGTGGCAT 57.321 40.909 0.00 0.00 0.00 4.40
4203 4800 0.962356 AAAATGCCTGCCACGGAGAG 60.962 55.000 0.00 0.00 0.00 3.20
4204 4801 1.074775 AAAATGCCTGCCACGGAGA 59.925 52.632 0.00 0.00 0.00 3.71
4245 4842 1.303317 GGGAAATGTGCAGGGTCGT 60.303 57.895 0.00 0.00 0.00 4.34
4273 4870 3.081409 TACCCTTGCTCTCCCCGC 61.081 66.667 0.00 0.00 0.00 6.13
4280 4877 2.025155 TCTCATCGAGTACCCTTGCTC 58.975 52.381 0.00 0.00 0.00 4.26
4281 4878 2.145397 TCTCATCGAGTACCCTTGCT 57.855 50.000 0.00 0.00 0.00 3.91
4282 4879 2.362397 TGATCTCATCGAGTACCCTTGC 59.638 50.000 0.00 0.00 0.00 4.01
4283 4880 3.551863 GCTGATCTCATCGAGTACCCTTG 60.552 52.174 0.00 0.00 0.00 3.61
4284 4881 2.625790 GCTGATCTCATCGAGTACCCTT 59.374 50.000 0.00 0.00 0.00 3.95
4285 4882 2.235016 GCTGATCTCATCGAGTACCCT 58.765 52.381 0.00 0.00 0.00 4.34
4286 4883 1.271102 GGCTGATCTCATCGAGTACCC 59.729 57.143 0.00 0.00 0.00 3.69
4287 4884 1.957177 TGGCTGATCTCATCGAGTACC 59.043 52.381 0.00 0.00 0.00 3.34
4288 4885 2.881513 TCTGGCTGATCTCATCGAGTAC 59.118 50.000 0.00 0.00 0.00 2.73
4289 4886 3.214696 TCTGGCTGATCTCATCGAGTA 57.785 47.619 0.00 0.00 0.00 2.59
4290 4887 2.064434 TCTGGCTGATCTCATCGAGT 57.936 50.000 0.00 0.00 0.00 4.18
4291 4888 3.505293 TGTATCTGGCTGATCTCATCGAG 59.495 47.826 10.36 0.00 36.65 4.04
4292 4889 3.490348 TGTATCTGGCTGATCTCATCGA 58.510 45.455 10.36 0.00 36.65 3.59
4293 4890 3.835779 CTGTATCTGGCTGATCTCATCG 58.164 50.000 10.36 0.00 36.65 3.84
4294 4891 3.587923 GCTGTATCTGGCTGATCTCATC 58.412 50.000 10.36 4.36 36.65 2.92
4295 4892 2.029200 CGCTGTATCTGGCTGATCTCAT 60.029 50.000 10.36 0.00 36.65 2.90
4296 4893 1.339291 CGCTGTATCTGGCTGATCTCA 59.661 52.381 10.36 10.20 36.65 3.27
4297 4894 1.611006 TCGCTGTATCTGGCTGATCTC 59.389 52.381 10.36 6.38 36.65 2.75
4298 4895 1.339610 GTCGCTGTATCTGGCTGATCT 59.660 52.381 10.36 0.00 36.65 2.75
4299 4896 1.777101 GTCGCTGTATCTGGCTGATC 58.223 55.000 10.36 3.94 36.65 2.92
4300 4897 0.031314 CGTCGCTGTATCTGGCTGAT 59.969 55.000 11.75 11.75 39.11 2.90
4301 4898 1.433471 CGTCGCTGTATCTGGCTGA 59.567 57.895 0.00 0.00 0.00 4.26
4302 4899 1.589993 CCGTCGCTGTATCTGGCTG 60.590 63.158 0.00 0.00 0.00 4.85
4303 4900 2.786495 CCCGTCGCTGTATCTGGCT 61.786 63.158 0.00 0.00 0.00 4.75
4304 4901 2.279517 CCCGTCGCTGTATCTGGC 60.280 66.667 0.00 0.00 0.00 4.85
4305 4902 0.108329 AAACCCGTCGCTGTATCTGG 60.108 55.000 0.00 0.00 0.00 3.86
4306 4903 1.722011 AAAACCCGTCGCTGTATCTG 58.278 50.000 0.00 0.00 0.00 2.90
4307 4904 2.028385 AGAAAAACCCGTCGCTGTATCT 60.028 45.455 0.00 0.00 0.00 1.98
4308 4905 2.344025 AGAAAAACCCGTCGCTGTATC 58.656 47.619 0.00 0.00 0.00 2.24
4309 4906 2.467566 AGAAAAACCCGTCGCTGTAT 57.532 45.000 0.00 0.00 0.00 2.29
4310 4907 2.243602 AAGAAAAACCCGTCGCTGTA 57.756 45.000 0.00 0.00 0.00 2.74
4311 4908 2.243602 TAAGAAAAACCCGTCGCTGT 57.756 45.000 0.00 0.00 0.00 4.40
4312 4909 3.242804 TGTTTAAGAAAAACCCGTCGCTG 60.243 43.478 0.00 0.00 0.00 5.18
4313 4910 2.944349 TGTTTAAGAAAAACCCGTCGCT 59.056 40.909 0.00 0.00 0.00 4.93
4314 4911 3.038017 GTGTTTAAGAAAAACCCGTCGC 58.962 45.455 0.00 0.00 0.00 5.19
4315 4912 4.201841 ACTGTGTTTAAGAAAAACCCGTCG 60.202 41.667 0.00 0.00 0.00 5.12
4316 4913 5.239359 ACTGTGTTTAAGAAAAACCCGTC 57.761 39.130 0.00 0.00 0.00 4.79
4317 4914 5.647225 TGTACTGTGTTTAAGAAAAACCCGT 59.353 36.000 0.00 0.00 0.00 5.28
4318 4915 6.037391 TCTGTACTGTGTTTAAGAAAAACCCG 59.963 38.462 0.00 0.00 0.00 5.28
4319 4916 7.324354 TCTGTACTGTGTTTAAGAAAAACCC 57.676 36.000 0.00 0.00 0.00 4.11
4320 4917 7.378728 GCATCTGTACTGTGTTTAAGAAAAACC 59.621 37.037 0.00 0.00 0.00 3.27
4321 4918 7.913297 TGCATCTGTACTGTGTTTAAGAAAAAC 59.087 33.333 0.00 0.00 0.00 2.43
4322 4919 7.990917 TGCATCTGTACTGTGTTTAAGAAAAA 58.009 30.769 0.00 0.00 0.00 1.94
4323 4920 7.561021 TGCATCTGTACTGTGTTTAAGAAAA 57.439 32.000 0.00 0.00 0.00 2.29
4324 4921 7.561021 TTGCATCTGTACTGTGTTTAAGAAA 57.439 32.000 0.00 0.00 0.00 2.52
4325 4922 7.360017 CGATTGCATCTGTACTGTGTTTAAGAA 60.360 37.037 0.00 0.00 0.00 2.52
4326 4923 6.090763 CGATTGCATCTGTACTGTGTTTAAGA 59.909 38.462 0.00 0.00 0.00 2.10
4327 4924 6.243551 CGATTGCATCTGTACTGTGTTTAAG 58.756 40.000 0.00 0.00 0.00 1.85
4328 4925 5.390461 GCGATTGCATCTGTACTGTGTTTAA 60.390 40.000 0.00 0.00 42.15 1.52
4329 4926 4.092821 GCGATTGCATCTGTACTGTGTTTA 59.907 41.667 0.00 0.00 42.15 2.01
4330 4927 3.120199 GCGATTGCATCTGTACTGTGTTT 60.120 43.478 0.00 0.00 42.15 2.83
4331 4928 2.416547 GCGATTGCATCTGTACTGTGTT 59.583 45.455 0.00 0.00 42.15 3.32
4332 4929 2.002586 GCGATTGCATCTGTACTGTGT 58.997 47.619 0.00 0.00 42.15 3.72
4333 4930 2.274437 AGCGATTGCATCTGTACTGTG 58.726 47.619 7.90 0.00 46.23 3.66
4334 4931 2.094026 TGAGCGATTGCATCTGTACTGT 60.094 45.455 7.90 0.00 46.23 3.55
4335 4932 2.543641 TGAGCGATTGCATCTGTACTG 58.456 47.619 7.90 0.00 46.23 2.74
4336 4933 2.967599 TGAGCGATTGCATCTGTACT 57.032 45.000 7.90 0.00 46.23 2.73
4337 4934 5.863935 TGTATATGAGCGATTGCATCTGTAC 59.136 40.000 7.90 5.45 46.23 2.90
4338 4935 5.863935 GTGTATATGAGCGATTGCATCTGTA 59.136 40.000 7.90 1.39 46.23 2.74
4339 4936 4.687948 GTGTATATGAGCGATTGCATCTGT 59.312 41.667 7.90 0.00 46.23 3.41
4340 4937 4.687483 TGTGTATATGAGCGATTGCATCTG 59.313 41.667 7.90 0.00 46.23 2.90
4341 4938 4.687948 GTGTGTATATGAGCGATTGCATCT 59.312 41.667 7.90 0.00 46.23 2.90
4342 4939 4.433413 CGTGTGTATATGAGCGATTGCATC 60.433 45.833 7.90 2.74 46.23 3.91
4343 4940 3.429881 CGTGTGTATATGAGCGATTGCAT 59.570 43.478 7.90 0.00 46.23 3.96
4344 4941 2.794350 CGTGTGTATATGAGCGATTGCA 59.206 45.455 7.90 0.00 46.23 4.08
4345 4942 2.410262 GCGTGTGTATATGAGCGATTGC 60.410 50.000 0.00 0.00 43.24 3.56
4346 4943 2.794350 TGCGTGTGTATATGAGCGATTG 59.206 45.455 0.00 0.00 0.00 2.67
4347 4944 3.092334 TGCGTGTGTATATGAGCGATT 57.908 42.857 0.00 0.00 0.00 3.34
4348 4945 2.793278 TGCGTGTGTATATGAGCGAT 57.207 45.000 0.00 0.00 0.00 4.58
4349 4946 2.793278 ATGCGTGTGTATATGAGCGA 57.207 45.000 0.00 0.00 0.00 4.93
4350 4947 3.119628 GTGTATGCGTGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
4351 4948 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
4352 4949 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
4353 4950 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
4354 4951 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
4355 4952 4.341235 AGGTGAGTGTATGCGTGTGTATAT 59.659 41.667 0.00 0.00 0.00 0.86
4356 4953 3.697542 AGGTGAGTGTATGCGTGTGTATA 59.302 43.478 0.00 0.00 0.00 1.47
4357 4954 2.496070 AGGTGAGTGTATGCGTGTGTAT 59.504 45.455 0.00 0.00 0.00 2.29
4358 4955 1.890489 AGGTGAGTGTATGCGTGTGTA 59.110 47.619 0.00 0.00 0.00 2.90
4359 4956 0.679505 AGGTGAGTGTATGCGTGTGT 59.320 50.000 0.00 0.00 0.00 3.72
4360 4957 1.067565 AGAGGTGAGTGTATGCGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
4361 4958 1.257743 AGAGGTGAGTGTATGCGTGT 58.742 50.000 0.00 0.00 0.00 4.49
4362 4959 3.717400 ATAGAGGTGAGTGTATGCGTG 57.283 47.619 0.00 0.00 0.00 5.34
4363 4960 5.589192 GTTTATAGAGGTGAGTGTATGCGT 58.411 41.667 0.00 0.00 0.00 5.24
4364 4961 4.675565 CGTTTATAGAGGTGAGTGTATGCG 59.324 45.833 0.00 0.00 0.00 4.73
4365 4962 4.444720 GCGTTTATAGAGGTGAGTGTATGC 59.555 45.833 0.00 0.00 0.00 3.14
4366 4963 5.459107 GTGCGTTTATAGAGGTGAGTGTATG 59.541 44.000 0.00 0.00 0.00 2.39
4367 4964 5.126545 TGTGCGTTTATAGAGGTGAGTGTAT 59.873 40.000 0.00 0.00 0.00 2.29
4368 4965 4.460034 TGTGCGTTTATAGAGGTGAGTGTA 59.540 41.667 0.00 0.00 0.00 2.90
4369 4966 3.257375 TGTGCGTTTATAGAGGTGAGTGT 59.743 43.478 0.00 0.00 0.00 3.55
4370 4967 3.612860 GTGTGCGTTTATAGAGGTGAGTG 59.387 47.826 0.00 0.00 0.00 3.51
4371 4968 3.257375 TGTGTGCGTTTATAGAGGTGAGT 59.743 43.478 0.00 0.00 0.00 3.41
4372 4969 3.612860 GTGTGTGCGTTTATAGAGGTGAG 59.387 47.826 0.00 0.00 0.00 3.51
4373 4970 3.581755 GTGTGTGCGTTTATAGAGGTGA 58.418 45.455 0.00 0.00 0.00 4.02
4374 4971 2.344441 CGTGTGTGCGTTTATAGAGGTG 59.656 50.000 0.00 0.00 0.00 4.00
4375 4972 2.602878 CGTGTGTGCGTTTATAGAGGT 58.397 47.619 0.00 0.00 0.00 3.85
4376 4973 1.323534 GCGTGTGTGCGTTTATAGAGG 59.676 52.381 0.00 0.00 0.00 3.69
4377 4974 1.989864 TGCGTGTGTGCGTTTATAGAG 59.010 47.619 0.00 0.00 37.81 2.43
4378 4975 1.722464 GTGCGTGTGTGCGTTTATAGA 59.278 47.619 0.00 0.00 37.81 1.98
4379 4976 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
4380 4977 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
4381 4978 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
4382 4979 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
4383 4980 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
4384 4981 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
4385 4982 2.909614 TAAGGTGTGCGTGTGTGCGT 62.910 55.000 0.00 0.00 37.81 5.24
4386 4983 1.565156 ATAAGGTGTGCGTGTGTGCG 61.565 55.000 0.00 0.00 37.81 5.34
4387 4984 0.165944 GATAAGGTGTGCGTGTGTGC 59.834 55.000 0.00 0.00 0.00 4.57
4388 4985 0.796312 GGATAAGGTGTGCGTGTGTG 59.204 55.000 0.00 0.00 0.00 3.82
4389 4986 0.321298 GGGATAAGGTGTGCGTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
4390 4987 0.036388 AGGGATAAGGTGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
4391 4988 1.563924 TAGGGATAAGGTGTGCGTGT 58.436 50.000 0.00 0.00 0.00 4.49
4392 4989 2.102420 TCATAGGGATAAGGTGTGCGTG 59.898 50.000 0.00 0.00 0.00 5.34
4393 4990 2.365617 CTCATAGGGATAAGGTGTGCGT 59.634 50.000 0.00 0.00 0.00 5.24
4394 4991 2.868044 GCTCATAGGGATAAGGTGTGCG 60.868 54.545 0.00 0.00 0.00 5.34
4395 4992 2.104792 TGCTCATAGGGATAAGGTGTGC 59.895 50.000 0.00 0.00 0.00 4.57
4396 4993 3.495100 GGTGCTCATAGGGATAAGGTGTG 60.495 52.174 0.00 0.00 0.00 3.82
4397 4994 2.706190 GGTGCTCATAGGGATAAGGTGT 59.294 50.000 0.00 0.00 0.00 4.16
4398 4995 2.975489 AGGTGCTCATAGGGATAAGGTG 59.025 50.000 0.00 0.00 0.00 4.00
4399 4996 3.352611 AGGTGCTCATAGGGATAAGGT 57.647 47.619 0.00 0.00 0.00 3.50
4400 4997 3.306364 CGAAGGTGCTCATAGGGATAAGG 60.306 52.174 0.00 0.00 0.00 2.69
4401 4998 3.574396 TCGAAGGTGCTCATAGGGATAAG 59.426 47.826 0.00 0.00 0.00 1.73
4402 4999 3.572642 TCGAAGGTGCTCATAGGGATAA 58.427 45.455 0.00 0.00 0.00 1.75
4403 5000 3.238788 TCGAAGGTGCTCATAGGGATA 57.761 47.619 0.00 0.00 0.00 2.59
4404 5001 2.088104 TCGAAGGTGCTCATAGGGAT 57.912 50.000 0.00 0.00 0.00 3.85
4405 5002 1.860641 TTCGAAGGTGCTCATAGGGA 58.139 50.000 0.00 0.00 0.00 4.20
4406 5003 2.691409 TTTCGAAGGTGCTCATAGGG 57.309 50.000 0.00 0.00 0.00 3.53
4407 5004 4.003648 AGTTTTTCGAAGGTGCTCATAGG 58.996 43.478 0.00 0.00 0.00 2.57
4408 5005 4.690748 TCAGTTTTTCGAAGGTGCTCATAG 59.309 41.667 0.00 0.00 0.00 2.23
4409 5006 4.637276 TCAGTTTTTCGAAGGTGCTCATA 58.363 39.130 0.00 0.00 0.00 2.15
4410 5007 3.476552 TCAGTTTTTCGAAGGTGCTCAT 58.523 40.909 0.00 0.00 0.00 2.90
4411 5008 2.872245 CTCAGTTTTTCGAAGGTGCTCA 59.128 45.455 0.00 0.00 0.00 4.26
4412 5009 2.349912 GCTCAGTTTTTCGAAGGTGCTC 60.350 50.000 0.00 0.00 0.00 4.26
4413 5010 1.604278 GCTCAGTTTTTCGAAGGTGCT 59.396 47.619 0.00 0.00 0.00 4.40
4414 5011 1.604278 AGCTCAGTTTTTCGAAGGTGC 59.396 47.619 0.00 0.60 0.00 5.01
4415 5012 2.031682 CCAGCTCAGTTTTTCGAAGGTG 60.032 50.000 0.00 0.37 0.00 4.00
4416 5013 2.222027 CCAGCTCAGTTTTTCGAAGGT 58.778 47.619 0.00 0.00 0.00 3.50
4417 5014 1.068954 GCCAGCTCAGTTTTTCGAAGG 60.069 52.381 0.00 0.00 0.00 3.46
4418 5015 1.603802 TGCCAGCTCAGTTTTTCGAAG 59.396 47.619 0.00 0.00 0.00 3.79
4419 5016 1.674359 TGCCAGCTCAGTTTTTCGAA 58.326 45.000 0.00 0.00 0.00 3.71
4420 5017 1.896220 ATGCCAGCTCAGTTTTTCGA 58.104 45.000 0.00 0.00 0.00 3.71
4421 5018 3.374988 TGATATGCCAGCTCAGTTTTTCG 59.625 43.478 0.00 0.00 0.00 3.46
4422 5019 4.970662 TGATATGCCAGCTCAGTTTTTC 57.029 40.909 0.00 0.00 0.00 2.29
4423 5020 5.198965 AGATGATATGCCAGCTCAGTTTTT 58.801 37.500 0.00 0.00 0.00 1.94
4424 5021 4.789807 AGATGATATGCCAGCTCAGTTTT 58.210 39.130 0.00 0.00 0.00 2.43
4425 5022 4.434545 AGATGATATGCCAGCTCAGTTT 57.565 40.909 0.00 0.00 0.00 2.66
4426 5023 4.135306 CAAGATGATATGCCAGCTCAGTT 58.865 43.478 0.00 0.00 30.67 3.16
4427 5024 3.390311 TCAAGATGATATGCCAGCTCAGT 59.610 43.478 0.00 0.00 30.67 3.41
4428 5025 4.004196 TCAAGATGATATGCCAGCTCAG 57.996 45.455 0.00 0.00 30.67 3.35
4429 5026 4.426736 TTCAAGATGATATGCCAGCTCA 57.573 40.909 0.00 0.00 30.67 4.26
4430 5027 5.961396 ATTTCAAGATGATATGCCAGCTC 57.039 39.130 0.00 0.00 30.67 4.09
4431 5028 6.726490 AAATTTCAAGATGATATGCCAGCT 57.274 33.333 0.00 0.00 33.74 4.24
4432 5029 6.580041 CGTAAATTTCAAGATGATATGCCAGC 59.420 38.462 0.00 0.00 0.00 4.85
4433 5030 7.864686 TCGTAAATTTCAAGATGATATGCCAG 58.135 34.615 0.00 0.00 0.00 4.85
4434 5031 7.800155 TCGTAAATTTCAAGATGATATGCCA 57.200 32.000 0.00 0.00 0.00 4.92
4435 5032 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
4436 5033 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
4440 5037 8.331022 CGATGACTTCGTAAATTTCAAGATGAT 58.669 33.333 0.00 0.00 43.01 2.45
4441 5038 7.675478 CGATGACTTCGTAAATTTCAAGATGA 58.325 34.615 0.00 0.00 43.01 2.92
4442 5039 7.867579 CGATGACTTCGTAAATTTCAAGATG 57.132 36.000 0.00 0.00 43.01 2.90
4457 5054 1.534175 CGAGGTGCCTACGATGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
4458 5055 0.456221 CGAGGTGCCTACGATGACTT 59.544 55.000 0.00 0.00 0.00 3.01
4459 5056 0.680280 ACGAGGTGCCTACGATGACT 60.680 55.000 13.88 0.00 0.00 3.41
4460 5057 0.248539 GACGAGGTGCCTACGATGAC 60.249 60.000 13.88 0.00 0.00 3.06
4461 5058 1.712018 CGACGAGGTGCCTACGATGA 61.712 60.000 13.88 0.00 0.00 2.92
4462 5059 1.298413 CGACGAGGTGCCTACGATG 60.298 63.158 13.88 5.24 0.00 3.84
4463 5060 1.712977 GACGACGAGGTGCCTACGAT 61.713 60.000 0.00 4.15 0.00 3.73
4464 5061 2.359107 ACGACGAGGTGCCTACGA 60.359 61.111 0.00 0.00 0.00 3.43
4465 5062 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
4466 5063 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
4467 5064 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
4488 5085 4.434330 CGCATTCAGTAAGAGGAAACGTTC 60.434 45.833 0.00 0.00 0.00 3.95
4489 5086 3.432252 CGCATTCAGTAAGAGGAAACGTT 59.568 43.478 0.00 0.00 0.00 3.99
4490 5087 2.993899 CGCATTCAGTAAGAGGAAACGT 59.006 45.455 0.00 0.00 0.00 3.99
4491 5088 2.222819 GCGCATTCAGTAAGAGGAAACG 60.223 50.000 0.30 0.00 32.90 3.60
4492 5089 2.742053 TGCGCATTCAGTAAGAGGAAAC 59.258 45.455 5.66 0.00 0.00 2.78
4493 5090 3.052455 TGCGCATTCAGTAAGAGGAAA 57.948 42.857 5.66 0.00 0.00 3.13
4494 5091 2.760634 TGCGCATTCAGTAAGAGGAA 57.239 45.000 5.66 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.