Multiple sequence alignment - TraesCS4A01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G341200 chr4A 100.000 2809 0 0 1 2809 621794602 621791794 0.000000e+00 5188.0
1 TraesCS4A01G341200 chr5D 91.818 1100 31 12 836 1895 547048955 547050035 0.000000e+00 1478.0
2 TraesCS4A01G341200 chr5D 91.935 620 22 17 2179 2771 547050037 547050655 0.000000e+00 843.0
3 TraesCS4A01G341200 chr5D 97.101 69 2 0 2741 2809 547050643 547050711 1.770000e-22 117.0
4 TraesCS4A01G341200 chr5B 83.490 1387 92 56 575 1909 690169849 690171150 0.000000e+00 1166.0
5 TraesCS4A01G341200 chr5B 81.834 578 89 12 1 570 18349659 18350228 3.280000e-129 472.0
6 TraesCS4A01G341200 chr5B 97.770 269 6 0 1917 2185 663641246 663641514 5.480000e-127 464.0
7 TraesCS4A01G341200 chr5B 91.003 289 17 4 2530 2809 690221426 690221714 5.680000e-102 381.0
8 TraesCS4A01G341200 chr5B 93.103 58 4 0 1852 1909 690220799 690220856 4.990000e-13 86.1
9 TraesCS4A01G341200 chr5B 91.379 58 5 0 1852 1909 690220879 690220936 2.320000e-11 80.5
10 TraesCS4A01G341200 chr3A 90.877 570 51 1 1 570 599573147 599572579 0.000000e+00 763.0
11 TraesCS4A01G341200 chr5A 93.857 407 23 2 77 483 475329637 475329233 1.850000e-171 612.0
12 TraesCS4A01G341200 chr5A 98.485 264 4 0 1921 2184 605695041 605695304 1.520000e-127 466.0
13 TraesCS4A01G341200 chr5A 94.000 200 12 0 371 570 475329234 475329035 1.260000e-78 303.0
14 TraesCS4A01G341200 chr2A 84.229 577 83 8 1 570 572743725 572744300 3.160000e-154 555.0
15 TraesCS4A01G341200 chr2A 84.808 520 71 8 58 570 144612877 144612359 1.490000e-142 516.0
16 TraesCS4A01G341200 chr4D 82.007 578 88 12 1 570 472514039 472513470 7.040000e-131 477.0
17 TraesCS4A01G341200 chr4D 83.395 271 37 6 305 570 502570250 502569983 7.770000e-61 244.0
18 TraesCS4A01G341200 chr6A 98.513 269 4 0 1920 2188 100731952 100732220 2.530000e-130 475.0
19 TraesCS4A01G341200 chrUn 81.834 578 90 13 1 570 30082113 30082683 3.280000e-129 472.0
20 TraesCS4A01G341200 chrUn 98.106 264 5 0 1921 2184 82631264 82631001 7.090000e-126 460.0
21 TraesCS4A01G341200 chrUn 81.315 578 93 12 1 570 93237032 93236462 3.300000e-124 455.0
22 TraesCS4A01G341200 chr6B 97.802 273 5 1 1918 2189 181505215 181505487 1.180000e-128 470.0
23 TraesCS4A01G341200 chr6B 97.398 269 6 1 1921 2189 71592953 71592686 9.170000e-125 457.0
24 TraesCS4A01G341200 chr6B 82.051 117 14 6 618 734 30308591 30308482 2.980000e-15 93.5
25 TraesCS4A01G341200 chr1D 81.661 578 90 12 1 570 378314070 378313501 1.520000e-127 466.0
26 TraesCS4A01G341200 chr2B 97.761 268 6 0 1918 2185 650416544 650416811 1.970000e-126 462.0
27 TraesCS4A01G341200 chr7A 97.407 270 7 0 1915 2184 85729995 85730264 7.090000e-126 460.0
28 TraesCS4A01G341200 chr7A 80.307 391 48 23 193 570 643551312 643550938 4.610000e-68 268.0
29 TraesCS4A01G341200 chr3B 96.703 273 9 0 1917 2189 52717765 52718037 3.300000e-124 455.0
30 TraesCS4A01G341200 chr4B 100.000 30 0 0 1829 1858 124020257 124020286 3.910000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G341200 chr4A 621791794 621794602 2808 True 5188.000000 5188 100.0000 1 2809 1 chr4A.!!$R1 2808
1 TraesCS4A01G341200 chr5D 547048955 547050711 1756 False 812.666667 1478 93.6180 836 2809 3 chr5D.!!$F1 1973
2 TraesCS4A01G341200 chr5B 690169849 690171150 1301 False 1166.000000 1166 83.4900 575 1909 1 chr5B.!!$F3 1334
3 TraesCS4A01G341200 chr5B 18349659 18350228 569 False 472.000000 472 81.8340 1 570 1 chr5B.!!$F1 569
4 TraesCS4A01G341200 chr3A 599572579 599573147 568 True 763.000000 763 90.8770 1 570 1 chr3A.!!$R1 569
5 TraesCS4A01G341200 chr5A 475329035 475329637 602 True 457.500000 612 93.9285 77 570 2 chr5A.!!$R1 493
6 TraesCS4A01G341200 chr2A 572743725 572744300 575 False 555.000000 555 84.2290 1 570 1 chr2A.!!$F1 569
7 TraesCS4A01G341200 chr2A 144612359 144612877 518 True 516.000000 516 84.8080 58 570 1 chr2A.!!$R1 512
8 TraesCS4A01G341200 chr4D 472513470 472514039 569 True 477.000000 477 82.0070 1 570 1 chr4D.!!$R1 569
9 TraesCS4A01G341200 chrUn 30082113 30082683 570 False 472.000000 472 81.8340 1 570 1 chrUn.!!$F1 569
10 TraesCS4A01G341200 chrUn 93236462 93237032 570 True 455.000000 455 81.3150 1 570 1 chrUn.!!$R2 569
11 TraesCS4A01G341200 chr1D 378313501 378314070 569 True 466.000000 466 81.6610 1 570 1 chr1D.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 1122 0.29084 CGTCGCACGCATATATACGC 59.709 55.0 5.23 0.0 33.65 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2395 0.254178 ATTCAGGCGCCACATCTCTT 59.746 50.0 31.54 0.76 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.403252 AATGCTCGTACTCCTTTGGG 57.597 50.000 0.00 0.00 0.00 4.12
44 45 3.637273 GGGGGCTGTCTTCACCGT 61.637 66.667 0.00 0.00 0.00 4.83
68 69 7.148306 CGTTTGCTCTTTTATGTTATACTGGGT 60.148 37.037 0.00 0.00 0.00 4.51
125 126 0.536006 GCTGGTGTGAAGAGGCTTGT 60.536 55.000 0.00 0.00 0.00 3.16
136 137 0.955428 GAGGCTTGTTCATGTGGCGA 60.955 55.000 0.00 0.00 0.00 5.54
206 207 4.666907 AGATGGGGATGGTATTCAGATTGT 59.333 41.667 0.00 0.00 0.00 2.71
274 276 0.836606 TCTGATGCCCGCTGGATTTA 59.163 50.000 0.00 0.00 0.00 1.40
287 289 4.215399 CGCTGGATTTACTCTTTTGGTGAA 59.785 41.667 0.00 0.00 0.00 3.18
336 341 4.357918 ACTCTAGACATGTGCTTTTGGT 57.642 40.909 1.15 0.00 0.00 3.67
379 495 1.228124 CAGGTTTTCGCCCCACAGA 60.228 57.895 0.00 0.00 0.00 3.41
416 533 0.387565 GTTGTCATGCGGTGGGTTTT 59.612 50.000 0.00 0.00 0.00 2.43
449 566 0.765510 AACTCGCTCTCACCCCTTTT 59.234 50.000 0.00 0.00 0.00 2.27
502 621 2.939103 GCTCGGTGCTTATCTTGTGATT 59.061 45.455 0.00 0.00 38.95 2.57
559 686 6.251655 TGCAAAATTAATGAAAATGGGTGC 57.748 33.333 0.00 0.00 0.00 5.01
571 698 4.832608 GGGTGCGAGCCCGGTTAG 62.833 72.222 0.00 0.00 39.17 2.34
572 699 4.832608 GGTGCGAGCCCGGTTAGG 62.833 72.222 0.00 0.00 40.63 2.69
588 715 3.370953 GGTTAGGGAGTTGATGAGCATGT 60.371 47.826 0.00 0.00 0.00 3.21
625 752 7.009999 TCGGTTCATTTGTTTGTCAGAAAATTG 59.990 33.333 0.00 0.00 0.00 2.32
626 753 7.009999 CGGTTCATTTGTTTGTCAGAAAATTGA 59.990 33.333 0.00 0.00 0.00 2.57
641 768 6.472163 CAGAAAATTGACGTACTTTGCAAACT 59.528 34.615 8.05 1.87 0.00 2.66
645 772 7.673810 AATTGACGTACTTTGCAAACTAAAC 57.326 32.000 8.05 3.36 0.00 2.01
659 786 5.734498 GCAAACTAAACTTGCTATCATCACG 59.266 40.000 0.41 0.00 44.66 4.35
662 789 5.720202 ACTAAACTTGCTATCATCACGTCA 58.280 37.500 0.00 0.00 0.00 4.35
678 805 9.323985 TCATCACGTCAATATAAATTGTCATGA 57.676 29.630 0.00 0.00 42.66 3.07
708 835 3.073798 TCAGGTTCACCATGCCTAGAAAA 59.926 43.478 0.00 0.00 38.89 2.29
709 836 4.019174 CAGGTTCACCATGCCTAGAAAAT 58.981 43.478 0.00 0.00 38.89 1.82
710 837 4.096984 CAGGTTCACCATGCCTAGAAAATC 59.903 45.833 0.00 0.00 38.89 2.17
711 838 3.381590 GGTTCACCATGCCTAGAAAATCC 59.618 47.826 0.00 0.00 35.64 3.01
712 839 2.917933 TCACCATGCCTAGAAAATCCG 58.082 47.619 0.00 0.00 0.00 4.18
713 840 2.503765 TCACCATGCCTAGAAAATCCGA 59.496 45.455 0.00 0.00 0.00 4.55
714 841 2.614057 CACCATGCCTAGAAAATCCGAC 59.386 50.000 0.00 0.00 0.00 4.79
715 842 1.867233 CCATGCCTAGAAAATCCGACG 59.133 52.381 0.00 0.00 0.00 5.12
718 845 3.872511 TGCCTAGAAAATCCGACGTTA 57.127 42.857 0.00 0.00 0.00 3.18
737 864 7.481275 ACGTTAGATTTTTAGTGTTTCCGAA 57.519 32.000 0.00 0.00 0.00 4.30
739 866 8.013378 ACGTTAGATTTTTAGTGTTTCCGAATG 58.987 33.333 0.00 0.00 0.00 2.67
740 867 8.013378 CGTTAGATTTTTAGTGTTTCCGAATGT 58.987 33.333 0.00 0.00 0.00 2.71
741 868 9.673454 GTTAGATTTTTAGTGTTTCCGAATGTT 57.327 29.630 0.00 0.00 0.00 2.71
744 871 9.594478 AGATTTTTAGTGTTTCCGAATGTTTTT 57.406 25.926 0.00 0.00 0.00 1.94
790 917 0.907704 AGGACGTGGAATGGGTGCTA 60.908 55.000 0.00 0.00 30.17 3.49
792 919 1.414919 GGACGTGGAATGGGTGCTATA 59.585 52.381 0.00 0.00 0.00 1.31
826 953 3.701532 ATTCACGCGGAAACAAGAAAA 57.298 38.095 12.47 0.00 39.39 2.29
827 954 3.489180 TTCACGCGGAAACAAGAAAAA 57.511 38.095 12.47 0.00 30.98 1.94
958 1101 3.997064 CTCCACCGCTCCGCTCTTG 62.997 68.421 0.00 0.00 0.00 3.02
977 1120 0.638746 GCCGTCGCACGCATATATAC 59.361 55.000 3.56 0.00 40.91 1.47
978 1121 0.905175 CCGTCGCACGCATATATACG 59.095 55.000 3.75 3.75 40.91 3.06
979 1122 0.290840 CGTCGCACGCATATATACGC 59.709 55.000 5.23 0.00 33.65 4.42
1322 1517 4.115199 ATGACCGAGCCCAAGCCC 62.115 66.667 0.00 0.00 41.25 5.19
1453 1648 2.194271 CGTCCTCGCCTTCTAATGAAC 58.806 52.381 0.00 0.00 0.00 3.18
1458 1653 2.168521 CTCGCCTTCTAATGAACCTCCA 59.831 50.000 0.00 0.00 0.00 3.86
1545 1743 1.852157 ATCCAGGCCTTCACCCACA 60.852 57.895 0.00 0.00 0.00 4.17
1575 1773 4.262164 GCTCTTCCATTCATCCTCTCTCTC 60.262 50.000 0.00 0.00 0.00 3.20
1576 1774 5.141455 TCTTCCATTCATCCTCTCTCTCT 57.859 43.478 0.00 0.00 0.00 3.10
1577 1775 5.139727 TCTTCCATTCATCCTCTCTCTCTC 58.860 45.833 0.00 0.00 0.00 3.20
1578 1776 4.812403 TCCATTCATCCTCTCTCTCTCT 57.188 45.455 0.00 0.00 0.00 3.10
1579 1777 4.728772 TCCATTCATCCTCTCTCTCTCTC 58.271 47.826 0.00 0.00 0.00 3.20
1580 1778 4.416513 TCCATTCATCCTCTCTCTCTCTCT 59.583 45.833 0.00 0.00 0.00 3.10
1581 1779 4.763793 CCATTCATCCTCTCTCTCTCTCTC 59.236 50.000 0.00 0.00 0.00 3.20
1624 1826 8.595533 CGTATATATGTATCTAACCACGTACGT 58.404 37.037 16.72 16.72 0.00 3.57
1657 1859 2.476185 GCATGCACGACACTATGAAACC 60.476 50.000 14.21 0.00 0.00 3.27
1662 1864 1.336148 ACGACACTATGAAACCGCGAA 60.336 47.619 8.23 0.00 0.00 4.70
1709 1914 2.031683 GGTGCGTGCAACATATAGTTCC 59.968 50.000 4.74 0.00 38.74 3.62
1770 1975 2.009051 ACAGCTTTGTTTTTGCTTGCC 58.991 42.857 0.00 0.00 34.51 4.52
1771 1976 2.282407 CAGCTTTGTTTTTGCTTGCCT 58.718 42.857 0.00 0.00 34.51 4.75
1772 1977 2.679336 CAGCTTTGTTTTTGCTTGCCTT 59.321 40.909 0.00 0.00 34.51 4.35
1823 2028 8.853469 AGTTTCGATTGTACAAGTATAGTAGC 57.147 34.615 14.65 0.00 0.00 3.58
1871 2079 6.473758 AGTACAAAGTTTCCAAGGGAGTATC 58.526 40.000 0.00 0.00 31.21 2.24
1909 2117 1.372087 AAGTGAATGCAGCCGCTAGC 61.372 55.000 4.06 4.06 44.25 3.42
1925 2133 2.501610 GCTGCTAGCTACGGCCTT 59.498 61.111 17.23 0.00 38.45 4.35
1926 2134 1.592939 GCTGCTAGCTACGGCCTTC 60.593 63.158 17.23 0.00 38.45 3.46
1927 2135 2.022240 GCTGCTAGCTACGGCCTTCT 62.022 60.000 17.23 0.00 38.45 2.85
1928 2136 0.461961 CTGCTAGCTACGGCCTTCTT 59.538 55.000 17.23 0.00 39.73 2.52
1929 2137 0.902531 TGCTAGCTACGGCCTTCTTT 59.097 50.000 17.23 0.00 39.73 2.52
1930 2138 1.291132 GCTAGCTACGGCCTTCTTTG 58.709 55.000 7.70 0.00 39.73 2.77
1931 2139 1.941325 CTAGCTACGGCCTTCTTTGG 58.059 55.000 0.00 0.00 39.73 3.28
1932 2140 1.480954 CTAGCTACGGCCTTCTTTGGA 59.519 52.381 0.00 0.00 39.73 3.53
1933 2141 0.912486 AGCTACGGCCTTCTTTGGAT 59.088 50.000 0.00 0.00 39.73 3.41
1934 2142 1.282157 AGCTACGGCCTTCTTTGGATT 59.718 47.619 0.00 0.00 39.73 3.01
1935 2143 1.401905 GCTACGGCCTTCTTTGGATTG 59.598 52.381 0.00 0.00 0.00 2.67
1936 2144 2.017049 CTACGGCCTTCTTTGGATTGG 58.983 52.381 0.00 0.00 0.00 3.16
1937 2145 0.404040 ACGGCCTTCTTTGGATTGGA 59.596 50.000 0.00 0.00 0.00 3.53
1938 2146 1.098050 CGGCCTTCTTTGGATTGGAG 58.902 55.000 0.00 0.00 0.00 3.86
1939 2147 1.478631 GGCCTTCTTTGGATTGGAGG 58.521 55.000 0.00 0.00 0.00 4.30
1940 2148 1.005924 GGCCTTCTTTGGATTGGAGGA 59.994 52.381 0.00 0.00 0.00 3.71
1941 2149 2.358615 GGCCTTCTTTGGATTGGAGGAT 60.359 50.000 0.00 0.00 0.00 3.24
1942 2150 3.369175 GCCTTCTTTGGATTGGAGGATT 58.631 45.455 0.00 0.00 0.00 3.01
1943 2151 3.771479 GCCTTCTTTGGATTGGAGGATTT 59.229 43.478 0.00 0.00 0.00 2.17
1944 2152 4.223700 GCCTTCTTTGGATTGGAGGATTTT 59.776 41.667 0.00 0.00 0.00 1.82
1945 2153 5.625426 GCCTTCTTTGGATTGGAGGATTTTC 60.625 44.000 0.00 0.00 0.00 2.29
1946 2154 5.481473 CCTTCTTTGGATTGGAGGATTTTCA 59.519 40.000 0.00 0.00 0.00 2.69
1947 2155 6.014327 CCTTCTTTGGATTGGAGGATTTTCAA 60.014 38.462 0.00 0.00 0.00 2.69
1948 2156 6.992664 TCTTTGGATTGGAGGATTTTCAAA 57.007 33.333 0.00 0.00 0.00 2.69
1949 2157 6.996509 TCTTTGGATTGGAGGATTTTCAAAG 58.003 36.000 0.00 0.00 40.34 2.77
1950 2158 5.743636 TTGGATTGGAGGATTTTCAAAGG 57.256 39.130 0.00 0.00 0.00 3.11
1951 2159 5.009436 TGGATTGGAGGATTTTCAAAGGA 57.991 39.130 0.00 0.00 0.00 3.36
1952 2160 5.592795 TGGATTGGAGGATTTTCAAAGGAT 58.407 37.500 0.00 0.00 0.00 3.24
1953 2161 6.024893 TGGATTGGAGGATTTTCAAAGGATT 58.975 36.000 0.00 0.00 0.00 3.01
1954 2162 6.501453 TGGATTGGAGGATTTTCAAAGGATTT 59.499 34.615 0.00 0.00 40.26 2.17
1955 2163 7.017452 TGGATTGGAGGATTTTCAAAGGATTTT 59.983 33.333 0.00 0.00 35.03 1.82
1956 2164 7.550551 GGATTGGAGGATTTTCAAAGGATTTTC 59.449 37.037 0.00 0.00 35.03 2.29
1957 2165 6.992664 TGGAGGATTTTCAAAGGATTTTCA 57.007 33.333 0.00 0.00 35.03 2.69
1958 2166 7.557875 TGGAGGATTTTCAAAGGATTTTCAT 57.442 32.000 0.00 0.00 35.03 2.57
1959 2167 7.388437 TGGAGGATTTTCAAAGGATTTTCATG 58.612 34.615 0.00 0.00 35.03 3.07
1960 2168 6.820152 GGAGGATTTTCAAAGGATTTTCATGG 59.180 38.462 0.00 0.00 35.03 3.66
1961 2169 6.714278 AGGATTTTCAAAGGATTTTCATGGG 58.286 36.000 0.00 0.00 35.03 4.00
1962 2170 6.501453 AGGATTTTCAAAGGATTTTCATGGGA 59.499 34.615 0.00 0.00 35.03 4.37
1963 2171 7.183293 AGGATTTTCAAAGGATTTTCATGGGAT 59.817 33.333 0.00 0.00 35.03 3.85
1964 2172 8.485392 GGATTTTCAAAGGATTTTCATGGGATA 58.515 33.333 0.00 0.00 35.03 2.59
1967 2175 8.606754 TTTCAAAGGATTTTCATGGGATATCA 57.393 30.769 4.83 0.00 35.03 2.15
1968 2176 8.606754 TTCAAAGGATTTTCATGGGATATCAA 57.393 30.769 4.83 0.00 35.03 2.57
1969 2177 8.786710 TCAAAGGATTTTCATGGGATATCAAT 57.213 30.769 4.83 0.00 35.03 2.57
1970 2178 8.863086 TCAAAGGATTTTCATGGGATATCAATC 58.137 33.333 4.83 3.45 35.03 2.67
1971 2179 8.092687 CAAAGGATTTTCATGGGATATCAATCC 58.907 37.037 15.85 15.85 43.66 3.01
1972 2180 8.014859 AAAGGATTTTCATGGGATATCAATCCT 58.985 33.333 18.69 18.69 46.88 3.24
2003 2211 5.913137 TTTCCTATGAAACGCATTTGGAT 57.087 34.783 0.00 0.00 37.85 3.41
2004 2212 5.499139 TTCCTATGAAACGCATTTGGATC 57.501 39.130 0.00 0.00 37.85 3.36
2005 2213 4.522114 TCCTATGAAACGCATTTGGATCA 58.478 39.130 0.00 0.00 38.44 2.92
2006 2214 4.946772 TCCTATGAAACGCATTTGGATCAA 59.053 37.500 0.00 0.00 38.44 2.57
2007 2215 5.417266 TCCTATGAAACGCATTTGGATCAAA 59.583 36.000 0.00 0.00 38.44 2.69
2008 2216 5.745294 CCTATGAAACGCATTTGGATCAAAG 59.255 40.000 0.00 0.00 36.76 2.77
2009 2217 3.911868 TGAAACGCATTTGGATCAAAGG 58.088 40.909 0.00 1.33 36.76 3.11
2010 2218 3.571828 TGAAACGCATTTGGATCAAAGGA 59.428 39.130 8.87 0.00 37.32 3.36
2011 2219 4.220382 TGAAACGCATTTGGATCAAAGGAT 59.780 37.500 8.87 0.00 37.32 3.24
2012 2220 4.806640 AACGCATTTGGATCAAAGGATT 57.193 36.364 8.87 0.73 37.32 3.01
2013 2221 4.114058 ACGCATTTGGATCAAAGGATTG 57.886 40.909 8.87 0.00 37.32 2.67
2014 2222 3.119029 ACGCATTTGGATCAAAGGATTGG 60.119 43.478 8.87 0.00 37.32 3.16
2015 2223 3.738899 CGCATTTGGATCAAAGGATTGGG 60.739 47.826 8.87 2.85 37.32 4.12
2016 2224 3.800531 CATTTGGATCAAAGGATTGGGC 58.199 45.455 0.00 0.00 37.32 5.36
2017 2225 1.864669 TTGGATCAAAGGATTGGGCC 58.135 50.000 0.00 0.00 37.15 5.80
2018 2226 0.709397 TGGATCAAAGGATTGGGCCA 59.291 50.000 0.00 0.00 37.61 5.36
2019 2227 1.291637 TGGATCAAAGGATTGGGCCAT 59.708 47.619 7.26 0.00 36.15 4.40
2020 2228 2.293051 TGGATCAAAGGATTGGGCCATT 60.293 45.455 7.26 2.95 36.15 3.16
2021 2229 3.052262 TGGATCAAAGGATTGGGCCATTA 60.052 43.478 7.26 0.00 36.15 1.90
2022 2230 3.966665 GGATCAAAGGATTGGGCCATTAA 59.033 43.478 7.26 0.00 37.15 1.40
2023 2231 4.408596 GGATCAAAGGATTGGGCCATTAAA 59.591 41.667 7.26 0.00 37.15 1.52
2024 2232 5.104569 GGATCAAAGGATTGGGCCATTAAAA 60.105 40.000 7.26 0.00 37.15 1.52
2025 2233 6.409579 GGATCAAAGGATTGGGCCATTAAAAT 60.410 38.462 7.26 0.00 37.15 1.82
2026 2234 6.385766 TCAAAGGATTGGGCCATTAAAATT 57.614 33.333 7.26 0.00 37.15 1.82
2027 2235 6.413892 TCAAAGGATTGGGCCATTAAAATTC 58.586 36.000 7.26 0.00 37.15 2.17
2028 2236 5.372343 AAGGATTGGGCCATTAAAATTCC 57.628 39.130 7.26 5.69 0.00 3.01
2029 2237 4.634411 AGGATTGGGCCATTAAAATTCCT 58.366 39.130 7.26 7.94 0.00 3.36
2030 2238 4.655649 AGGATTGGGCCATTAAAATTCCTC 59.344 41.667 7.26 0.00 0.00 3.71
2031 2239 4.408596 GGATTGGGCCATTAAAATTCCTCA 59.591 41.667 7.26 0.00 0.00 3.86
2032 2240 5.453762 GGATTGGGCCATTAAAATTCCTCAG 60.454 44.000 7.26 0.00 0.00 3.35
2033 2241 3.373830 TGGGCCATTAAAATTCCTCAGG 58.626 45.455 0.00 0.00 0.00 3.86
2034 2242 3.012274 TGGGCCATTAAAATTCCTCAGGA 59.988 43.478 0.00 0.00 0.00 3.86
2035 2243 4.226384 GGGCCATTAAAATTCCTCAGGAT 58.774 43.478 4.39 0.00 0.00 3.24
2036 2244 4.655649 GGGCCATTAAAATTCCTCAGGATT 59.344 41.667 4.39 0.00 0.00 3.01
2037 2245 5.453762 GGGCCATTAAAATTCCTCAGGATTG 60.454 44.000 4.39 0.00 0.00 2.67
2038 2246 5.453762 GGCCATTAAAATTCCTCAGGATTGG 60.454 44.000 0.00 0.00 0.00 3.16
2039 2247 5.453762 GCCATTAAAATTCCTCAGGATTGGG 60.454 44.000 0.00 0.00 0.00 4.12
2040 2248 5.662657 CCATTAAAATTCCTCAGGATTGGGT 59.337 40.000 0.00 0.00 0.00 4.51
2041 2249 6.183360 CCATTAAAATTCCTCAGGATTGGGTC 60.183 42.308 0.00 0.00 0.00 4.46
2042 2250 4.682021 AAAATTCCTCAGGATTGGGTCT 57.318 40.909 0.00 0.00 0.00 3.85
2043 2251 4.682021 AAATTCCTCAGGATTGGGTCTT 57.318 40.909 0.00 0.00 0.00 3.01
2044 2252 3.941704 ATTCCTCAGGATTGGGTCTTC 57.058 47.619 0.00 0.00 0.00 2.87
2045 2253 2.342406 TCCTCAGGATTGGGTCTTCA 57.658 50.000 0.00 0.00 0.00 3.02
2046 2254 2.631384 TCCTCAGGATTGGGTCTTCAA 58.369 47.619 0.00 0.00 0.00 2.69
2047 2255 2.573462 TCCTCAGGATTGGGTCTTCAAG 59.427 50.000 0.00 0.00 0.00 3.02
2048 2256 2.356535 CCTCAGGATTGGGTCTTCAAGG 60.357 54.545 0.00 0.00 0.00 3.61
2049 2257 2.307098 CTCAGGATTGGGTCTTCAAGGT 59.693 50.000 0.00 0.00 0.00 3.50
2050 2258 2.040278 TCAGGATTGGGTCTTCAAGGTG 59.960 50.000 0.00 0.00 0.00 4.00
2051 2259 1.177401 GGATTGGGTCTTCAAGGTGC 58.823 55.000 0.00 0.00 0.00 5.01
2052 2260 1.272147 GGATTGGGTCTTCAAGGTGCT 60.272 52.381 0.00 0.00 0.00 4.40
2053 2261 1.815003 GATTGGGTCTTCAAGGTGCTG 59.185 52.381 0.00 0.00 0.00 4.41
2054 2262 0.843309 TTGGGTCTTCAAGGTGCTGA 59.157 50.000 0.00 0.00 0.00 4.26
2055 2263 0.843309 TGGGTCTTCAAGGTGCTGAA 59.157 50.000 0.00 0.00 34.22 3.02
2056 2264 1.425066 TGGGTCTTCAAGGTGCTGAAT 59.575 47.619 0.00 0.00 34.86 2.57
2057 2265 2.087646 GGGTCTTCAAGGTGCTGAATC 58.912 52.381 0.00 0.00 34.86 2.52
2058 2266 2.087646 GGTCTTCAAGGTGCTGAATCC 58.912 52.381 0.00 0.00 34.86 3.01
2059 2267 2.553028 GGTCTTCAAGGTGCTGAATCCA 60.553 50.000 0.00 0.00 34.86 3.41
2060 2268 3.149196 GTCTTCAAGGTGCTGAATCCAA 58.851 45.455 0.00 0.00 34.86 3.53
2061 2269 3.569701 GTCTTCAAGGTGCTGAATCCAAA 59.430 43.478 0.00 0.00 34.86 3.28
2062 2270 4.037923 GTCTTCAAGGTGCTGAATCCAAAA 59.962 41.667 0.00 0.00 34.86 2.44
2063 2271 4.279169 TCTTCAAGGTGCTGAATCCAAAAG 59.721 41.667 0.00 0.00 34.86 2.27
2064 2272 3.831323 TCAAGGTGCTGAATCCAAAAGA 58.169 40.909 0.00 0.00 0.00 2.52
2065 2273 4.214310 TCAAGGTGCTGAATCCAAAAGAA 58.786 39.130 0.00 0.00 0.00 2.52
2066 2274 4.834496 TCAAGGTGCTGAATCCAAAAGAAT 59.166 37.500 0.00 0.00 0.00 2.40
2067 2275 5.305128 TCAAGGTGCTGAATCCAAAAGAATT 59.695 36.000 0.00 0.00 0.00 2.17
2068 2276 5.813513 AGGTGCTGAATCCAAAAGAATTT 57.186 34.783 0.00 0.00 42.41 1.82
2069 2277 6.916360 AGGTGCTGAATCCAAAAGAATTTA 57.084 33.333 0.00 0.00 37.28 1.40
2070 2278 6.691508 AGGTGCTGAATCCAAAAGAATTTAC 58.308 36.000 0.00 0.00 37.28 2.01
2071 2279 6.267471 AGGTGCTGAATCCAAAAGAATTTACA 59.733 34.615 0.00 0.00 37.28 2.41
2072 2280 6.366061 GGTGCTGAATCCAAAAGAATTTACAC 59.634 38.462 0.00 0.00 37.28 2.90
2073 2281 6.922957 GTGCTGAATCCAAAAGAATTTACACA 59.077 34.615 0.00 0.00 37.28 3.72
2074 2282 7.599998 GTGCTGAATCCAAAAGAATTTACACAT 59.400 33.333 0.00 0.00 37.28 3.21
2075 2283 7.599621 TGCTGAATCCAAAAGAATTTACACATG 59.400 33.333 0.00 0.00 37.28 3.21
2076 2284 7.814107 GCTGAATCCAAAAGAATTTACACATGA 59.186 33.333 0.00 0.00 37.28 3.07
2077 2285 9.350357 CTGAATCCAAAAGAATTTACACATGAG 57.650 33.333 0.00 0.00 37.28 2.90
2078 2286 8.306038 TGAATCCAAAAGAATTTACACATGAGG 58.694 33.333 0.00 0.00 37.28 3.86
2079 2287 7.781324 ATCCAAAAGAATTTACACATGAGGT 57.219 32.000 0.00 0.00 37.28 3.85
2080 2288 7.214467 TCCAAAAGAATTTACACATGAGGTC 57.786 36.000 0.00 0.00 37.28 3.85
2081 2289 7.004086 TCCAAAAGAATTTACACATGAGGTCT 58.996 34.615 0.00 0.00 37.28 3.85
2082 2290 7.040478 TCCAAAAGAATTTACACATGAGGTCTG 60.040 37.037 0.00 0.00 37.28 3.51
2083 2291 7.040478 CCAAAAGAATTTACACATGAGGTCTGA 60.040 37.037 0.00 0.00 37.28 3.27
2084 2292 7.440523 AAAGAATTTACACATGAGGTCTGAC 57.559 36.000 0.00 0.00 35.86 3.51
2085 2293 5.491982 AGAATTTACACATGAGGTCTGACC 58.508 41.667 19.20 19.20 38.99 4.02
2086 2294 7.692789 AAAGAATTTACACATGAGGTCTGACCT 60.693 37.037 28.70 28.70 45.15 3.85
2116 2324 3.498774 ATCCACAGGATTGGCTATGTC 57.501 47.619 0.00 0.00 39.79 3.06
2117 2325 2.195727 TCCACAGGATTGGCTATGTCA 58.804 47.619 0.00 0.00 36.48 3.58
2118 2326 2.779430 TCCACAGGATTGGCTATGTCAT 59.221 45.455 0.00 0.00 36.48 3.06
2119 2327 2.882761 CCACAGGATTGGCTATGTCATG 59.117 50.000 0.00 0.00 0.00 3.07
2120 2328 2.882761 CACAGGATTGGCTATGTCATGG 59.117 50.000 0.00 0.00 0.00 3.66
2121 2329 1.884579 CAGGATTGGCTATGTCATGGC 59.115 52.381 12.50 12.50 35.84 4.40
2122 2330 1.496001 AGGATTGGCTATGTCATGGCA 59.504 47.619 21.17 0.60 38.67 4.92
2126 2334 2.732844 TGGCTATGTCATGGCAATCA 57.267 45.000 21.17 8.67 38.67 2.57
2127 2335 3.015675 TGGCTATGTCATGGCAATCAA 57.984 42.857 21.17 0.54 38.67 2.57
2128 2336 3.363627 TGGCTATGTCATGGCAATCAAA 58.636 40.909 21.17 0.00 38.67 2.69
2129 2337 3.962063 TGGCTATGTCATGGCAATCAAAT 59.038 39.130 21.17 0.00 38.67 2.32
2130 2338 4.038282 TGGCTATGTCATGGCAATCAAATC 59.962 41.667 21.17 3.64 38.67 2.17
2131 2339 4.553323 GCTATGTCATGGCAATCAAATCC 58.447 43.478 15.68 0.00 36.68 3.01
2132 2340 4.280174 GCTATGTCATGGCAATCAAATCCT 59.720 41.667 15.68 0.00 36.68 3.24
2133 2341 4.931661 ATGTCATGGCAATCAAATCCTC 57.068 40.909 3.01 0.00 0.00 3.71
2134 2342 3.025978 TGTCATGGCAATCAAATCCTCC 58.974 45.455 0.00 0.00 0.00 4.30
2135 2343 3.025978 GTCATGGCAATCAAATCCTCCA 58.974 45.455 0.00 0.00 0.00 3.86
2136 2344 3.640029 GTCATGGCAATCAAATCCTCCAT 59.360 43.478 0.00 0.00 34.90 3.41
2137 2345 4.100498 GTCATGGCAATCAAATCCTCCATT 59.900 41.667 0.00 0.00 32.48 3.16
2138 2346 4.717778 TCATGGCAATCAAATCCTCCATTT 59.282 37.500 0.00 0.00 34.79 2.32
2139 2347 5.190132 TCATGGCAATCAAATCCTCCATTTT 59.810 36.000 0.00 0.00 31.79 1.82
2140 2348 5.502089 TGGCAATCAAATCCTCCATTTTT 57.498 34.783 0.00 0.00 31.79 1.94
2141 2349 5.490159 TGGCAATCAAATCCTCCATTTTTC 58.510 37.500 0.00 0.00 31.79 2.29
2142 2350 4.877823 GGCAATCAAATCCTCCATTTTTCC 59.122 41.667 0.00 0.00 31.79 3.13
2143 2351 5.338626 GGCAATCAAATCCTCCATTTTTCCT 60.339 40.000 0.00 0.00 31.79 3.36
2144 2352 6.127083 GGCAATCAAATCCTCCATTTTTCCTA 60.127 38.462 0.00 0.00 31.79 2.94
2145 2353 7.419403 GGCAATCAAATCCTCCATTTTTCCTAT 60.419 37.037 0.00 0.00 31.79 2.57
2146 2354 7.989170 GCAATCAAATCCTCCATTTTTCCTATT 59.011 33.333 0.00 0.00 31.79 1.73
2147 2355 9.538508 CAATCAAATCCTCCATTTTTCCTATTC 57.461 33.333 0.00 0.00 31.79 1.75
2148 2356 7.660030 TCAAATCCTCCATTTTTCCTATTCC 57.340 36.000 0.00 0.00 31.79 3.01
2149 2357 7.421684 TCAAATCCTCCATTTTTCCTATTCCT 58.578 34.615 0.00 0.00 31.79 3.36
2150 2358 7.900784 TCAAATCCTCCATTTTTCCTATTCCTT 59.099 33.333 0.00 0.00 31.79 3.36
2151 2359 8.542926 CAAATCCTCCATTTTTCCTATTCCTTT 58.457 33.333 0.00 0.00 31.79 3.11
2152 2360 7.666063 ATCCTCCATTTTTCCTATTCCTTTG 57.334 36.000 0.00 0.00 0.00 2.77
2153 2361 6.561294 TCCTCCATTTTTCCTATTCCTTTGT 58.439 36.000 0.00 0.00 0.00 2.83
2154 2362 7.016296 TCCTCCATTTTTCCTATTCCTTTGTT 58.984 34.615 0.00 0.00 0.00 2.83
2155 2363 7.512402 TCCTCCATTTTTCCTATTCCTTTGTTT 59.488 33.333 0.00 0.00 0.00 2.83
2156 2364 8.156820 CCTCCATTTTTCCTATTCCTTTGTTTT 58.843 33.333 0.00 0.00 0.00 2.43
2157 2365 8.900983 TCCATTTTTCCTATTCCTTTGTTTTG 57.099 30.769 0.00 0.00 0.00 2.44
2158 2366 7.443879 TCCATTTTTCCTATTCCTTTGTTTTGC 59.556 33.333 0.00 0.00 0.00 3.68
2159 2367 7.228308 CCATTTTTCCTATTCCTTTGTTTTGCA 59.772 33.333 0.00 0.00 0.00 4.08
2160 2368 8.619546 CATTTTTCCTATTCCTTTGTTTTGCAA 58.380 29.630 0.00 0.00 34.87 4.08
2161 2369 8.567285 TTTTTCCTATTCCTTTGTTTTGCAAA 57.433 26.923 8.05 8.05 44.05 3.68
2162 2370 8.744568 TTTTCCTATTCCTTTGTTTTGCAAAT 57.255 26.923 13.65 0.00 45.00 2.32
2163 2371 7.961325 TTCCTATTCCTTTGTTTTGCAAATC 57.039 32.000 13.65 12.94 45.00 2.17
2164 2372 6.463360 TCCTATTCCTTTGTTTTGCAAATCC 58.537 36.000 13.65 7.53 45.00 3.01
2165 2373 6.269769 TCCTATTCCTTTGTTTTGCAAATCCT 59.730 34.615 13.65 0.00 45.00 3.24
2166 2374 6.369615 CCTATTCCTTTGTTTTGCAAATCCTG 59.630 38.462 13.65 5.22 45.00 3.86
2167 2375 4.751767 TCCTTTGTTTTGCAAATCCTGT 57.248 36.364 13.65 0.00 45.00 4.00
2168 2376 4.440880 TCCTTTGTTTTGCAAATCCTGTG 58.559 39.130 13.65 1.54 45.00 3.66
2169 2377 4.161189 TCCTTTGTTTTGCAAATCCTGTGA 59.839 37.500 13.65 3.95 45.00 3.58
2170 2378 5.058490 CCTTTGTTTTGCAAATCCTGTGAT 58.942 37.500 13.65 0.00 45.00 3.06
2171 2379 5.178067 CCTTTGTTTTGCAAATCCTGTGATC 59.822 40.000 13.65 0.00 45.00 2.92
2172 2380 4.255833 TGTTTTGCAAATCCTGTGATCC 57.744 40.909 13.65 0.00 0.00 3.36
2173 2381 3.640498 TGTTTTGCAAATCCTGTGATCCA 59.360 39.130 13.65 0.00 0.00 3.41
2174 2382 4.100653 TGTTTTGCAAATCCTGTGATCCAA 59.899 37.500 13.65 0.00 0.00 3.53
2175 2383 4.952071 TTTGCAAATCCTGTGATCCAAA 57.048 36.364 8.05 0.00 0.00 3.28
2176 2384 4.524316 TTGCAAATCCTGTGATCCAAAG 57.476 40.909 0.00 0.00 0.00 2.77
2177 2385 3.765381 TGCAAATCCTGTGATCCAAAGA 58.235 40.909 0.00 0.00 0.00 2.52
2178 2386 4.151121 TGCAAATCCTGTGATCCAAAGAA 58.849 39.130 0.00 0.00 0.00 2.52
2179 2387 4.219070 TGCAAATCCTGTGATCCAAAGAAG 59.781 41.667 0.00 0.00 0.00 2.85
2180 2388 4.741342 CAAATCCTGTGATCCAAAGAAGC 58.259 43.478 0.00 0.00 0.00 3.86
2181 2389 2.496899 TCCTGTGATCCAAAGAAGCC 57.503 50.000 0.00 0.00 0.00 4.35
2185 2393 3.274288 CTGTGATCCAAAGAAGCCCTAC 58.726 50.000 0.00 0.00 0.00 3.18
2187 2395 3.073798 TGTGATCCAAAGAAGCCCTACAA 59.926 43.478 0.00 0.00 0.00 2.41
2207 2415 0.179062 AGAGATGTGGCGCCTGAATC 60.179 55.000 29.70 24.77 0.00 2.52
2232 2440 3.386726 TGATACATAGTCCCAGTTTCCCG 59.613 47.826 0.00 0.00 0.00 5.14
2324 2533 2.874701 CAGCCGAAAATACATCAGAGGG 59.125 50.000 0.00 0.00 0.00 4.30
2351 2560 3.690139 TGATCAACAGTCCTCTACTCGAC 59.310 47.826 0.00 0.00 35.76 4.20
2354 2563 2.814919 CAACAGTCCTCTACTCGACAGT 59.185 50.000 0.00 0.00 35.76 3.55
2454 2687 4.844085 TGGTATTATGGTATCCTCCTGTGG 59.156 45.833 0.00 0.00 0.00 4.17
2458 2691 5.630415 TTATGGTATCCTCCTGTGGAAAG 57.370 43.478 0.00 0.00 39.85 2.62
2562 2795 2.301870 ACTCGTTAGATTCACCAGCCAA 59.698 45.455 0.00 0.00 0.00 4.52
2576 2809 1.732259 CAGCCAATCCGTGTTCACTAC 59.268 52.381 1.53 0.00 0.00 2.73
2578 2811 1.732259 GCCAATCCGTGTTCACTACTG 59.268 52.381 1.53 0.00 0.00 2.74
2581 2814 3.390135 CAATCCGTGTTCACTACTGTGT 58.610 45.455 1.53 0.00 44.14 3.72
2617 2850 5.480642 TCATCTTGGCCTCTCAATCTATC 57.519 43.478 3.32 0.00 0.00 2.08
2621 2854 2.666317 TGGCCTCTCAATCTATCGTCA 58.334 47.619 3.32 0.00 0.00 4.35
2632 2865 1.569548 TCTATCGTCAGAGGGGGAAGT 59.430 52.381 0.00 0.00 0.00 3.01
2660 2893 3.244526 TGCTTACTGAAGAATGGCTGTCA 60.245 43.478 0.00 0.00 34.25 3.58
2730 2964 8.873215 TGTTAGAATCTTTCGACCTATGATTC 57.127 34.615 12.78 12.78 41.67 2.52
2734 2968 8.600449 AGAATCTTTCGACCTATGATTCATTC 57.400 34.615 18.75 0.00 42.95 2.67
2777 3029 5.128919 AGAGAGAGAGAGAGAGATTTCTGC 58.871 45.833 0.00 0.00 32.53 4.26
2778 3030 4.858850 AGAGAGAGAGAGAGATTTCTGCA 58.141 43.478 0.00 0.00 32.53 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.431249 CCAAAGGAGTACGAGCATTATACTTA 58.569 38.462 0.00 0.00 29.25 2.24
29 30 1.949257 CAAACGGTGAAGACAGCCC 59.051 57.895 0.00 0.00 40.87 5.19
44 45 9.391006 CTACCCAGTATAACATAAAAGAGCAAA 57.609 33.333 0.00 0.00 0.00 3.68
68 69 2.119495 CTTCCTCCTTAAGCAGCCCTA 58.881 52.381 0.00 0.00 0.00 3.53
125 126 1.204704 CCAGAGTAGTCGCCACATGAA 59.795 52.381 0.00 0.00 0.00 2.57
247 249 1.836391 CGGGCATCAGACCCCAATA 59.164 57.895 8.40 0.00 45.37 1.90
249 251 4.424711 GCGGGCATCAGACCCCAA 62.425 66.667 8.40 0.00 45.37 4.12
274 276 3.288092 GGACCAACTTCACCAAAAGAGT 58.712 45.455 0.00 0.00 0.00 3.24
287 289 1.068121 CCAAAGAGGAGGGACCAACT 58.932 55.000 0.00 0.00 41.22 3.16
325 330 3.311322 CACTACTCGAAACCAAAAGCACA 59.689 43.478 0.00 0.00 0.00 4.57
336 341 4.555313 CGACACTACAACCACTACTCGAAA 60.555 45.833 0.00 0.00 0.00 3.46
379 495 3.263425 ACAACCCTGAAACGGACTATCAT 59.737 43.478 0.00 0.00 0.00 2.45
416 533 0.388520 CGAGTTGGTGCATCGTCAGA 60.389 55.000 0.00 0.00 0.00 3.27
449 566 3.741245 ACTACCAAGCAGAGGAGACTA 57.259 47.619 0.00 0.00 44.43 2.59
502 621 9.778741 AAAATACATCAGTCTTTGTAGTTCAGA 57.221 29.630 6.08 0.00 36.08 3.27
570 697 1.911357 TCACATGCTCATCAACTCCCT 59.089 47.619 0.00 0.00 0.00 4.20
571 698 2.408271 TCACATGCTCATCAACTCCC 57.592 50.000 0.00 0.00 0.00 4.30
572 699 4.201990 GGATTTCACATGCTCATCAACTCC 60.202 45.833 0.00 0.00 0.00 3.85
573 700 4.495349 CGGATTTCACATGCTCATCAACTC 60.495 45.833 0.00 0.00 0.00 3.01
580 707 2.621338 GAGACGGATTTCACATGCTCA 58.379 47.619 0.00 0.00 0.00 4.26
625 752 6.712301 CAAGTTTAGTTTGCAAAGTACGTC 57.288 37.500 23.27 16.32 0.00 4.34
641 768 8.887036 ATATTGACGTGATGATAGCAAGTTTA 57.113 30.769 0.00 0.00 0.00 2.01
690 817 3.065371 CGGATTTTCTAGGCATGGTGAAC 59.935 47.826 0.00 0.00 0.00 3.18
695 822 1.867233 CGTCGGATTTTCTAGGCATGG 59.133 52.381 0.00 0.00 0.00 3.66
708 835 7.148523 GGAAACACTAAAAATCTAACGTCGGAT 60.149 37.037 0.00 0.00 0.00 4.18
709 836 6.146021 GGAAACACTAAAAATCTAACGTCGGA 59.854 38.462 0.00 0.00 0.00 4.55
710 837 6.301861 GGAAACACTAAAAATCTAACGTCGG 58.698 40.000 0.00 0.00 0.00 4.79
711 838 6.005289 CGGAAACACTAAAAATCTAACGTCG 58.995 40.000 0.00 0.00 0.00 5.12
712 839 7.109006 TCGGAAACACTAAAAATCTAACGTC 57.891 36.000 0.00 0.00 0.00 4.34
713 840 7.481275 TTCGGAAACACTAAAAATCTAACGT 57.519 32.000 0.00 0.00 0.00 3.99
714 841 8.013378 ACATTCGGAAACACTAAAAATCTAACG 58.987 33.333 0.00 0.00 0.00 3.18
715 842 9.673454 AACATTCGGAAACACTAAAAATCTAAC 57.327 29.630 0.00 0.00 0.00 2.34
718 845 9.594478 AAAAACATTCGGAAACACTAAAAATCT 57.406 25.926 0.00 0.00 0.00 2.40
747 874 9.590451 CCTTTAACATACGGAAACACTATTCTA 57.410 33.333 0.00 0.00 0.00 2.10
748 875 8.316214 TCCTTTAACATACGGAAACACTATTCT 58.684 33.333 0.00 0.00 0.00 2.40
749 876 8.385858 GTCCTTTAACATACGGAAACACTATTC 58.614 37.037 0.00 0.00 0.00 1.75
750 877 7.063780 CGTCCTTTAACATACGGAAACACTATT 59.936 37.037 0.00 0.00 0.00 1.73
751 878 6.532657 CGTCCTTTAACATACGGAAACACTAT 59.467 38.462 0.00 0.00 0.00 2.12
752 879 5.863397 CGTCCTTTAACATACGGAAACACTA 59.137 40.000 0.00 0.00 0.00 2.74
753 880 4.687483 CGTCCTTTAACATACGGAAACACT 59.313 41.667 0.00 0.00 0.00 3.55
754 881 4.448732 ACGTCCTTTAACATACGGAAACAC 59.551 41.667 0.00 0.00 39.57 3.32
755 882 4.448395 CACGTCCTTTAACATACGGAAACA 59.552 41.667 0.00 0.00 39.57 2.83
756 883 4.143052 CCACGTCCTTTAACATACGGAAAC 60.143 45.833 0.00 0.00 39.57 2.78
757 884 3.995705 CCACGTCCTTTAACATACGGAAA 59.004 43.478 0.00 0.00 39.57 3.13
758 885 3.257873 TCCACGTCCTTTAACATACGGAA 59.742 43.478 0.00 0.00 39.57 4.30
759 886 2.824936 TCCACGTCCTTTAACATACGGA 59.175 45.455 0.00 0.00 39.57 4.69
760 887 3.235157 TCCACGTCCTTTAACATACGG 57.765 47.619 0.00 0.00 39.57 4.02
761 888 4.033587 CCATTCCACGTCCTTTAACATACG 59.966 45.833 0.00 0.00 40.99 3.06
762 889 4.334481 CCCATTCCACGTCCTTTAACATAC 59.666 45.833 0.00 0.00 0.00 2.39
763 890 4.019141 ACCCATTCCACGTCCTTTAACATA 60.019 41.667 0.00 0.00 0.00 2.29
764 891 3.245122 ACCCATTCCACGTCCTTTAACAT 60.245 43.478 0.00 0.00 0.00 2.71
765 892 2.106857 ACCCATTCCACGTCCTTTAACA 59.893 45.455 0.00 0.00 0.00 2.41
766 893 2.486592 CACCCATTCCACGTCCTTTAAC 59.513 50.000 0.00 0.00 0.00 2.01
770 897 1.303317 GCACCCATTCCACGTCCTT 60.303 57.895 0.00 0.00 0.00 3.36
790 917 7.822334 TCCGCGTGAATATATCTTGGAAATTAT 59.178 33.333 4.92 0.00 0.00 1.28
792 919 5.995282 TCCGCGTGAATATATCTTGGAAATT 59.005 36.000 4.92 0.00 0.00 1.82
827 954 9.471084 CGTCCCTGTTTAGTTTTTCATATTTTT 57.529 29.630 0.00 0.00 0.00 1.94
828 955 8.085909 CCGTCCCTGTTTAGTTTTTCATATTTT 58.914 33.333 0.00 0.00 0.00 1.82
829 956 7.599171 CCGTCCCTGTTTAGTTTTTCATATTT 58.401 34.615 0.00 0.00 0.00 1.40
958 1101 0.638746 GTATATATGCGTGCGACGGC 59.361 55.000 10.02 0.00 42.82 5.68
1030 1173 4.880537 AATCTGCGAGCGCGGGAG 62.881 66.667 21.85 14.97 46.72 4.30
1031 1174 3.950794 AAAATCTGCGAGCGCGGGA 62.951 57.895 21.85 16.22 46.72 5.14
1032 1175 3.440356 GAAAATCTGCGAGCGCGGG 62.440 63.158 21.85 11.73 46.72 6.13
1120 1303 2.055042 GCGAGCAGGAGGAGGAAGA 61.055 63.158 0.00 0.00 0.00 2.87
1121 1304 2.498726 GCGAGCAGGAGGAGGAAG 59.501 66.667 0.00 0.00 0.00 3.46
1122 1305 3.077556 GGCGAGCAGGAGGAGGAA 61.078 66.667 0.00 0.00 0.00 3.36
1286 1481 4.041762 GTGGTGCCGATGGGGGAA 62.042 66.667 0.00 0.00 38.18 3.97
1450 1645 1.696884 GATCTCCCTGGATGGAGGTTC 59.303 57.143 7.21 2.14 46.08 3.62
1458 1653 3.033659 ACGTAGTTGATCTCCCTGGAT 57.966 47.619 0.00 0.00 37.78 3.41
1545 1743 3.494048 GGATGAATGGAAGAGCGATGAGT 60.494 47.826 0.00 0.00 0.00 3.41
1575 1773 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
1576 1774 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
1577 1775 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
1578 1776 2.959030 CGGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
1579 1777 2.695666 ACGGAGAGAGAGAGAGAGAGAG 59.304 54.545 0.00 0.00 0.00 3.20
1580 1778 2.747177 ACGGAGAGAGAGAGAGAGAGA 58.253 52.381 0.00 0.00 0.00 3.10
1581 1779 4.873746 ATACGGAGAGAGAGAGAGAGAG 57.126 50.000 0.00 0.00 0.00 3.20
1632 1834 1.003223 CATAGTGTCGTGCATGCCATG 60.003 52.381 16.68 8.99 0.00 3.66
1633 1835 1.134431 TCATAGTGTCGTGCATGCCAT 60.134 47.619 16.68 0.00 0.00 4.40
1657 1859 3.836229 ATTTACTCGTATGCTTTCGCG 57.164 42.857 0.00 0.00 39.65 5.87
1662 1864 6.815142 ACGGTCTTTAATTTACTCGTATGCTT 59.185 34.615 0.00 0.00 0.00 3.91
1709 1914 2.190538 AGCATGGGAAAATTCCTTGGG 58.809 47.619 11.75 1.78 46.72 4.12
1909 2117 0.461961 AAGAAGGCCGTAGCTAGCAG 59.538 55.000 18.83 7.69 39.73 4.24
1910 2118 0.902531 AAAGAAGGCCGTAGCTAGCA 59.097 50.000 18.83 0.00 39.73 3.49
1911 2119 1.291132 CAAAGAAGGCCGTAGCTAGC 58.709 55.000 6.62 6.62 39.73 3.42
1912 2120 1.480954 TCCAAAGAAGGCCGTAGCTAG 59.519 52.381 0.00 0.00 39.73 3.42
1913 2121 1.563924 TCCAAAGAAGGCCGTAGCTA 58.436 50.000 0.00 0.00 39.73 3.32
1914 2122 0.912486 ATCCAAAGAAGGCCGTAGCT 59.088 50.000 0.00 0.00 39.73 3.32
1915 2123 1.401905 CAATCCAAAGAAGGCCGTAGC 59.598 52.381 0.00 0.00 38.76 3.58
1916 2124 2.017049 CCAATCCAAAGAAGGCCGTAG 58.983 52.381 0.00 0.00 0.00 3.51
1917 2125 1.631388 TCCAATCCAAAGAAGGCCGTA 59.369 47.619 0.00 0.00 0.00 4.02
1918 2126 0.404040 TCCAATCCAAAGAAGGCCGT 59.596 50.000 0.00 0.00 0.00 5.68
1919 2127 1.098050 CTCCAATCCAAAGAAGGCCG 58.902 55.000 0.00 0.00 0.00 6.13
1920 2128 1.005924 TCCTCCAATCCAAAGAAGGCC 59.994 52.381 0.00 0.00 0.00 5.19
1921 2129 2.514458 TCCTCCAATCCAAAGAAGGC 57.486 50.000 0.00 0.00 0.00 4.35
1922 2130 5.481473 TGAAAATCCTCCAATCCAAAGAAGG 59.519 40.000 0.00 0.00 0.00 3.46
1923 2131 6.594788 TGAAAATCCTCCAATCCAAAGAAG 57.405 37.500 0.00 0.00 0.00 2.85
1924 2132 6.992664 TTGAAAATCCTCCAATCCAAAGAA 57.007 33.333 0.00 0.00 0.00 2.52
1925 2133 6.014327 CCTTTGAAAATCCTCCAATCCAAAGA 60.014 38.462 0.00 0.00 40.69 2.52
1926 2134 6.014327 TCCTTTGAAAATCCTCCAATCCAAAG 60.014 38.462 0.00 0.00 39.03 2.77
1927 2135 5.843421 TCCTTTGAAAATCCTCCAATCCAAA 59.157 36.000 0.00 0.00 0.00 3.28
1928 2136 5.401750 TCCTTTGAAAATCCTCCAATCCAA 58.598 37.500 0.00 0.00 0.00 3.53
1929 2137 5.009436 TCCTTTGAAAATCCTCCAATCCA 57.991 39.130 0.00 0.00 0.00 3.41
1930 2138 6.550938 AATCCTTTGAAAATCCTCCAATCC 57.449 37.500 0.00 0.00 0.00 3.01
1931 2139 8.096414 TGAAAATCCTTTGAAAATCCTCCAATC 58.904 33.333 0.00 0.00 0.00 2.67
1932 2140 7.976712 TGAAAATCCTTTGAAAATCCTCCAAT 58.023 30.769 0.00 0.00 0.00 3.16
1933 2141 7.372260 TGAAAATCCTTTGAAAATCCTCCAA 57.628 32.000 0.00 0.00 0.00 3.53
1934 2142 6.992664 TGAAAATCCTTTGAAAATCCTCCA 57.007 33.333 0.00 0.00 0.00 3.86
1935 2143 6.820152 CCATGAAAATCCTTTGAAAATCCTCC 59.180 38.462 0.00 0.00 0.00 4.30
1936 2144 6.820152 CCCATGAAAATCCTTTGAAAATCCTC 59.180 38.462 0.00 0.00 0.00 3.71
1937 2145 6.501453 TCCCATGAAAATCCTTTGAAAATCCT 59.499 34.615 0.00 0.00 0.00 3.24
1938 2146 6.710278 TCCCATGAAAATCCTTTGAAAATCC 58.290 36.000 0.00 0.00 0.00 3.01
1941 2149 9.044646 TGATATCCCATGAAAATCCTTTGAAAA 57.955 29.630 0.00 0.00 0.00 2.29
1942 2150 8.606754 TGATATCCCATGAAAATCCTTTGAAA 57.393 30.769 0.00 0.00 0.00 2.69
1943 2151 8.606754 TTGATATCCCATGAAAATCCTTTGAA 57.393 30.769 0.00 0.00 0.00 2.69
1944 2152 8.786710 ATTGATATCCCATGAAAATCCTTTGA 57.213 30.769 0.00 0.00 0.00 2.69
1945 2153 8.092687 GGATTGATATCCCATGAAAATCCTTTG 58.907 37.037 16.15 0.00 43.98 2.77
1946 2154 8.198807 GGATTGATATCCCATGAAAATCCTTT 57.801 34.615 16.15 0.00 43.98 3.11
1947 2155 7.787623 GGATTGATATCCCATGAAAATCCTT 57.212 36.000 16.15 0.00 43.98 3.36
1981 2189 5.417266 TGATCCAAATGCGTTTCATAGGAAA 59.583 36.000 11.09 0.00 40.57 3.13
1982 2190 4.946772 TGATCCAAATGCGTTTCATAGGAA 59.053 37.500 11.09 0.00 40.57 3.36
1983 2191 4.522114 TGATCCAAATGCGTTTCATAGGA 58.478 39.130 9.83 9.83 41.08 2.94
1984 2192 4.898829 TGATCCAAATGCGTTTCATAGG 57.101 40.909 0.00 0.00 34.33 2.57
1985 2193 5.745294 CCTTTGATCCAAATGCGTTTCATAG 59.255 40.000 0.00 1.77 32.70 2.23
1986 2194 5.417266 TCCTTTGATCCAAATGCGTTTCATA 59.583 36.000 0.00 0.00 32.70 2.15
1987 2195 4.220382 TCCTTTGATCCAAATGCGTTTCAT 59.780 37.500 0.00 0.00 32.70 2.57
1988 2196 3.571828 TCCTTTGATCCAAATGCGTTTCA 59.428 39.130 0.00 0.00 32.70 2.69
1989 2197 4.173036 TCCTTTGATCCAAATGCGTTTC 57.827 40.909 0.00 0.00 32.70 2.78
1990 2198 4.806640 ATCCTTTGATCCAAATGCGTTT 57.193 36.364 0.00 0.00 32.70 3.60
1991 2199 4.497300 CAATCCTTTGATCCAAATGCGTT 58.503 39.130 0.00 0.00 34.60 4.84
1992 2200 3.119029 CCAATCCTTTGATCCAAATGCGT 60.119 43.478 0.00 0.00 34.60 5.24
1993 2201 3.450578 CCAATCCTTTGATCCAAATGCG 58.549 45.455 0.00 0.00 34.60 4.73
1994 2202 3.800531 CCCAATCCTTTGATCCAAATGC 58.199 45.455 0.00 0.00 34.60 3.56
1995 2203 3.432608 GGCCCAATCCTTTGATCCAAATG 60.433 47.826 0.00 0.00 34.60 2.32
1996 2204 2.773661 GGCCCAATCCTTTGATCCAAAT 59.226 45.455 0.00 0.00 34.60 2.32
1997 2205 2.187100 GGCCCAATCCTTTGATCCAAA 58.813 47.619 0.00 0.00 34.60 3.28
1998 2206 1.078490 TGGCCCAATCCTTTGATCCAA 59.922 47.619 0.00 0.00 33.82 3.53
1999 2207 0.709397 TGGCCCAATCCTTTGATCCA 59.291 50.000 0.00 0.00 34.60 3.41
2000 2208 2.092598 ATGGCCCAATCCTTTGATCC 57.907 50.000 0.00 0.00 34.60 3.36
2001 2209 5.612725 TTTAATGGCCCAATCCTTTGATC 57.387 39.130 0.00 0.00 34.60 2.92
2002 2210 6.579850 ATTTTAATGGCCCAATCCTTTGAT 57.420 33.333 0.00 0.00 34.60 2.57
2003 2211 6.385766 AATTTTAATGGCCCAATCCTTTGA 57.614 33.333 0.00 0.00 34.60 2.69
2004 2212 5.589855 GGAATTTTAATGGCCCAATCCTTTG 59.410 40.000 0.00 0.00 0.00 2.77
2005 2213 5.492162 AGGAATTTTAATGGCCCAATCCTTT 59.508 36.000 0.00 0.00 0.00 3.11
2006 2214 5.038962 AGGAATTTTAATGGCCCAATCCTT 58.961 37.500 0.00 0.00 0.00 3.36
2007 2215 4.634411 AGGAATTTTAATGGCCCAATCCT 58.366 39.130 0.00 0.00 0.00 3.24
2008 2216 4.408596 TGAGGAATTTTAATGGCCCAATCC 59.591 41.667 0.00 0.00 0.00 3.01
2009 2217 5.453762 CCTGAGGAATTTTAATGGCCCAATC 60.454 44.000 0.00 0.00 0.00 2.67
2010 2218 4.409901 CCTGAGGAATTTTAATGGCCCAAT 59.590 41.667 0.00 0.00 0.00 3.16
2011 2219 3.774216 CCTGAGGAATTTTAATGGCCCAA 59.226 43.478 0.00 0.00 0.00 4.12
2012 2220 3.012274 TCCTGAGGAATTTTAATGGCCCA 59.988 43.478 0.00 0.00 0.00 5.36
2013 2221 3.642141 TCCTGAGGAATTTTAATGGCCC 58.358 45.455 0.00 0.00 0.00 5.80
2014 2222 5.453762 CCAATCCTGAGGAATTTTAATGGCC 60.454 44.000 4.76 0.00 34.34 5.36
2015 2223 5.453762 CCCAATCCTGAGGAATTTTAATGGC 60.454 44.000 4.76 0.00 34.34 4.40
2016 2224 5.662657 ACCCAATCCTGAGGAATTTTAATGG 59.337 40.000 4.76 5.74 34.34 3.16
2017 2225 6.608808 AGACCCAATCCTGAGGAATTTTAATG 59.391 38.462 4.76 0.00 34.34 1.90
2018 2226 6.745857 AGACCCAATCCTGAGGAATTTTAAT 58.254 36.000 4.76 0.00 34.34 1.40
2019 2227 6.152638 AGACCCAATCCTGAGGAATTTTAA 57.847 37.500 4.76 0.00 34.34 1.52
2020 2228 5.796502 AGACCCAATCCTGAGGAATTTTA 57.203 39.130 4.76 0.00 34.34 1.52
2021 2229 4.682021 AGACCCAATCCTGAGGAATTTT 57.318 40.909 4.76 0.00 34.34 1.82
2022 2230 4.044571 TGAAGACCCAATCCTGAGGAATTT 59.955 41.667 4.76 0.00 34.34 1.82
2023 2231 3.593328 TGAAGACCCAATCCTGAGGAATT 59.407 43.478 4.76 0.00 34.34 2.17
2024 2232 3.192944 TGAAGACCCAATCCTGAGGAAT 58.807 45.455 4.76 0.00 34.34 3.01
2025 2233 2.631384 TGAAGACCCAATCCTGAGGAA 58.369 47.619 4.76 0.00 34.34 3.36
2026 2234 2.342406 TGAAGACCCAATCCTGAGGA 57.658 50.000 2.43 2.43 35.55 3.71
2027 2235 2.356535 CCTTGAAGACCCAATCCTGAGG 60.357 54.545 0.00 0.00 0.00 3.86
2028 2236 2.307098 ACCTTGAAGACCCAATCCTGAG 59.693 50.000 0.00 0.00 0.00 3.35
2029 2237 2.040278 CACCTTGAAGACCCAATCCTGA 59.960 50.000 0.00 0.00 0.00 3.86
2030 2238 2.440409 CACCTTGAAGACCCAATCCTG 58.560 52.381 0.00 0.00 0.00 3.86
2031 2239 1.272147 GCACCTTGAAGACCCAATCCT 60.272 52.381 0.00 0.00 0.00 3.24
2032 2240 1.177401 GCACCTTGAAGACCCAATCC 58.823 55.000 0.00 0.00 0.00 3.01
2033 2241 1.815003 CAGCACCTTGAAGACCCAATC 59.185 52.381 0.00 0.00 0.00 2.67
2034 2242 1.425066 TCAGCACCTTGAAGACCCAAT 59.575 47.619 0.00 0.00 0.00 3.16
2035 2243 0.843309 TCAGCACCTTGAAGACCCAA 59.157 50.000 0.00 0.00 0.00 4.12
2036 2244 0.843309 TTCAGCACCTTGAAGACCCA 59.157 50.000 0.00 0.00 32.39 4.51
2037 2245 2.087646 GATTCAGCACCTTGAAGACCC 58.912 52.381 0.00 0.00 40.16 4.46
2038 2246 2.087646 GGATTCAGCACCTTGAAGACC 58.912 52.381 0.00 0.00 40.16 3.85
2039 2247 2.783135 TGGATTCAGCACCTTGAAGAC 58.217 47.619 0.00 0.00 40.16 3.01
2040 2248 3.507162 TTGGATTCAGCACCTTGAAGA 57.493 42.857 0.00 0.00 40.16 2.87
2041 2249 4.279169 TCTTTTGGATTCAGCACCTTGAAG 59.721 41.667 0.00 0.00 40.16 3.02
2042 2250 4.214310 TCTTTTGGATTCAGCACCTTGAA 58.786 39.130 0.00 0.00 41.00 2.69
2043 2251 3.831323 TCTTTTGGATTCAGCACCTTGA 58.169 40.909 0.00 0.00 0.00 3.02
2044 2252 4.589216 TTCTTTTGGATTCAGCACCTTG 57.411 40.909 0.00 0.00 0.00 3.61
2045 2253 5.813513 AATTCTTTTGGATTCAGCACCTT 57.186 34.783 0.00 0.00 0.00 3.50
2046 2254 5.813513 AAATTCTTTTGGATTCAGCACCT 57.186 34.783 0.00 0.00 0.00 4.00
2047 2255 6.366061 GTGTAAATTCTTTTGGATTCAGCACC 59.634 38.462 0.00 0.00 0.00 5.01
2048 2256 6.922957 TGTGTAAATTCTTTTGGATTCAGCAC 59.077 34.615 0.00 0.00 0.00 4.40
2049 2257 7.048629 TGTGTAAATTCTTTTGGATTCAGCA 57.951 32.000 0.00 0.00 0.00 4.41
2050 2258 7.814107 TCATGTGTAAATTCTTTTGGATTCAGC 59.186 33.333 0.00 0.00 0.00 4.26
2051 2259 9.350357 CTCATGTGTAAATTCTTTTGGATTCAG 57.650 33.333 0.00 0.00 0.00 3.02
2052 2260 8.306038 CCTCATGTGTAAATTCTTTTGGATTCA 58.694 33.333 0.00 0.00 0.00 2.57
2053 2261 8.306761 ACCTCATGTGTAAATTCTTTTGGATTC 58.693 33.333 0.00 0.00 0.00 2.52
2054 2262 8.193953 ACCTCATGTGTAAATTCTTTTGGATT 57.806 30.769 0.00 0.00 0.00 3.01
2055 2263 7.671398 AGACCTCATGTGTAAATTCTTTTGGAT 59.329 33.333 0.00 0.00 0.00 3.41
2056 2264 7.004086 AGACCTCATGTGTAAATTCTTTTGGA 58.996 34.615 0.00 0.00 0.00 3.53
2057 2265 7.040478 TCAGACCTCATGTGTAAATTCTTTTGG 60.040 37.037 0.00 0.00 0.00 3.28
2058 2266 7.805071 GTCAGACCTCATGTGTAAATTCTTTTG 59.195 37.037 0.00 0.00 0.00 2.44
2059 2267 7.040409 GGTCAGACCTCATGTGTAAATTCTTTT 60.040 37.037 12.94 0.00 34.73 2.27
2060 2268 6.431234 GGTCAGACCTCATGTGTAAATTCTTT 59.569 38.462 12.94 0.00 34.73 2.52
2061 2269 5.940470 GGTCAGACCTCATGTGTAAATTCTT 59.060 40.000 12.94 0.00 34.73 2.52
2062 2270 5.491982 GGTCAGACCTCATGTGTAAATTCT 58.508 41.667 12.94 0.00 34.73 2.40
2063 2271 5.803020 GGTCAGACCTCATGTGTAAATTC 57.197 43.478 12.94 0.00 34.73 2.17
2096 2304 2.779430 TGACATAGCCAATCCTGTGGAT 59.221 45.455 0.00 0.00 45.46 3.41
2097 2305 2.195727 TGACATAGCCAATCCTGTGGA 58.804 47.619 0.00 0.00 41.65 4.02
2098 2306 2.715749 TGACATAGCCAATCCTGTGG 57.284 50.000 0.00 0.00 42.05 4.17
2099 2307 2.882761 CCATGACATAGCCAATCCTGTG 59.117 50.000 0.00 0.00 0.00 3.66
2100 2308 2.750807 GCCATGACATAGCCAATCCTGT 60.751 50.000 0.00 0.00 0.00 4.00
2101 2309 1.884579 GCCATGACATAGCCAATCCTG 59.115 52.381 0.00 0.00 0.00 3.86
2102 2310 1.496001 TGCCATGACATAGCCAATCCT 59.504 47.619 3.31 0.00 0.00 3.24
2103 2311 1.985473 TGCCATGACATAGCCAATCC 58.015 50.000 3.31 0.00 0.00 3.01
2104 2312 3.570975 TGATTGCCATGACATAGCCAATC 59.429 43.478 18.56 18.56 0.00 2.67
2105 2313 3.568443 TGATTGCCATGACATAGCCAAT 58.432 40.909 3.31 5.47 0.00 3.16
2106 2314 3.015675 TGATTGCCATGACATAGCCAA 57.984 42.857 3.31 0.99 0.00 4.52
2107 2315 2.732844 TGATTGCCATGACATAGCCA 57.267 45.000 3.31 0.00 0.00 4.75
2108 2316 4.553323 GATTTGATTGCCATGACATAGCC 58.447 43.478 3.31 0.00 0.00 3.93
2109 2317 4.280174 AGGATTTGATTGCCATGACATAGC 59.720 41.667 0.00 0.00 0.00 2.97
2110 2318 5.048224 GGAGGATTTGATTGCCATGACATAG 60.048 44.000 0.00 0.00 0.00 2.23
2111 2319 4.828939 GGAGGATTTGATTGCCATGACATA 59.171 41.667 0.00 0.00 0.00 2.29
2112 2320 3.640029 GGAGGATTTGATTGCCATGACAT 59.360 43.478 0.00 0.00 0.00 3.06
2113 2321 3.025978 GGAGGATTTGATTGCCATGACA 58.974 45.455 0.00 0.00 0.00 3.58
2114 2322 3.025978 TGGAGGATTTGATTGCCATGAC 58.974 45.455 0.00 0.00 0.00 3.06
2115 2323 3.385314 TGGAGGATTTGATTGCCATGA 57.615 42.857 0.00 0.00 0.00 3.07
2116 2324 4.682778 AATGGAGGATTTGATTGCCATG 57.317 40.909 0.00 0.00 36.34 3.66
2117 2325 5.703730 AAAATGGAGGATTTGATTGCCAT 57.296 34.783 0.00 0.00 37.71 4.40
2118 2326 5.490159 GAAAAATGGAGGATTTGATTGCCA 58.510 37.500 0.00 0.00 34.30 4.92
2119 2327 4.877823 GGAAAAATGGAGGATTTGATTGCC 59.122 41.667 0.00 0.00 34.30 4.52
2120 2328 5.737860 AGGAAAAATGGAGGATTTGATTGC 58.262 37.500 0.00 0.00 34.30 3.56
2121 2329 9.538508 GAATAGGAAAAATGGAGGATTTGATTG 57.461 33.333 0.00 0.00 34.30 2.67
2122 2330 8.708378 GGAATAGGAAAAATGGAGGATTTGATT 58.292 33.333 0.00 0.00 34.30 2.57
2123 2331 8.069979 AGGAATAGGAAAAATGGAGGATTTGAT 58.930 33.333 0.00 0.00 34.30 2.57
2124 2332 7.421684 AGGAATAGGAAAAATGGAGGATTTGA 58.578 34.615 0.00 0.00 34.30 2.69
2125 2333 7.666063 AGGAATAGGAAAAATGGAGGATTTG 57.334 36.000 0.00 0.00 34.30 2.32
2126 2334 8.542926 CAAAGGAATAGGAAAAATGGAGGATTT 58.457 33.333 0.00 0.00 35.65 2.17
2127 2335 7.679881 ACAAAGGAATAGGAAAAATGGAGGATT 59.320 33.333 0.00 0.00 0.00 3.01
2128 2336 7.191918 ACAAAGGAATAGGAAAAATGGAGGAT 58.808 34.615 0.00 0.00 0.00 3.24
2129 2337 6.561294 ACAAAGGAATAGGAAAAATGGAGGA 58.439 36.000 0.00 0.00 0.00 3.71
2130 2338 6.857437 ACAAAGGAATAGGAAAAATGGAGG 57.143 37.500 0.00 0.00 0.00 4.30
2131 2339 8.992073 CAAAACAAAGGAATAGGAAAAATGGAG 58.008 33.333 0.00 0.00 0.00 3.86
2132 2340 7.443879 GCAAAACAAAGGAATAGGAAAAATGGA 59.556 33.333 0.00 0.00 0.00 3.41
2133 2341 7.228308 TGCAAAACAAAGGAATAGGAAAAATGG 59.772 33.333 0.00 0.00 0.00 3.16
2134 2342 8.152309 TGCAAAACAAAGGAATAGGAAAAATG 57.848 30.769 0.00 0.00 0.00 2.32
2135 2343 8.744568 TTGCAAAACAAAGGAATAGGAAAAAT 57.255 26.923 0.00 0.00 34.56 1.82
2136 2344 8.567285 TTTGCAAAACAAAGGAATAGGAAAAA 57.433 26.923 10.02 0.00 43.35 1.94
2150 2358 4.100653 TGGATCACAGGATTTGCAAAACAA 59.899 37.500 17.19 0.00 36.13 2.83
2151 2359 3.640498 TGGATCACAGGATTTGCAAAACA 59.360 39.130 17.19 0.00 32.67 2.83
2152 2360 4.255833 TGGATCACAGGATTTGCAAAAC 57.744 40.909 17.19 13.72 32.67 2.43
2153 2361 4.952071 TTGGATCACAGGATTTGCAAAA 57.048 36.364 17.19 0.00 32.67 2.44
2154 2362 4.588106 TCTTTGGATCACAGGATTTGCAAA 59.412 37.500 15.44 15.44 32.67 3.68
2155 2363 4.151121 TCTTTGGATCACAGGATTTGCAA 58.849 39.130 0.00 0.00 32.67 4.08
2156 2364 3.765381 TCTTTGGATCACAGGATTTGCA 58.235 40.909 0.00 0.00 32.67 4.08
2157 2365 4.741342 CTTCTTTGGATCACAGGATTTGC 58.259 43.478 0.00 0.00 32.67 3.68
2158 2366 4.381292 GGCTTCTTTGGATCACAGGATTTG 60.381 45.833 0.00 0.00 32.67 2.32
2159 2367 3.766051 GGCTTCTTTGGATCACAGGATTT 59.234 43.478 0.00 0.00 32.67 2.17
2160 2368 3.359950 GGCTTCTTTGGATCACAGGATT 58.640 45.455 0.00 0.00 32.67 3.01
2161 2369 2.357569 GGGCTTCTTTGGATCACAGGAT 60.358 50.000 0.00 0.00 36.13 3.24
2162 2370 1.004745 GGGCTTCTTTGGATCACAGGA 59.995 52.381 0.00 0.00 0.00 3.86
2163 2371 1.005215 AGGGCTTCTTTGGATCACAGG 59.995 52.381 0.00 0.00 0.00 4.00
2164 2372 2.503895 AGGGCTTCTTTGGATCACAG 57.496 50.000 0.00 0.00 0.00 3.66
2165 2373 2.642311 TGTAGGGCTTCTTTGGATCACA 59.358 45.455 0.00 0.00 0.00 3.58
2166 2374 3.350219 TGTAGGGCTTCTTTGGATCAC 57.650 47.619 0.00 0.00 0.00 3.06
2167 2375 4.042809 TCTTTGTAGGGCTTCTTTGGATCA 59.957 41.667 0.00 0.00 0.00 2.92
2168 2376 4.589908 TCTTTGTAGGGCTTCTTTGGATC 58.410 43.478 0.00 0.00 0.00 3.36
2169 2377 4.289672 TCTCTTTGTAGGGCTTCTTTGGAT 59.710 41.667 0.00 0.00 0.00 3.41
2170 2378 3.650942 TCTCTTTGTAGGGCTTCTTTGGA 59.349 43.478 0.00 0.00 0.00 3.53
2171 2379 4.021102 TCTCTTTGTAGGGCTTCTTTGG 57.979 45.455 0.00 0.00 0.00 3.28
2172 2380 5.006386 ACATCTCTTTGTAGGGCTTCTTTG 58.994 41.667 0.00 0.00 0.00 2.77
2173 2381 5.006386 CACATCTCTTTGTAGGGCTTCTTT 58.994 41.667 0.00 0.00 0.00 2.52
2174 2382 4.566488 CCACATCTCTTTGTAGGGCTTCTT 60.566 45.833 0.00 0.00 0.00 2.52
2175 2383 3.054802 CCACATCTCTTTGTAGGGCTTCT 60.055 47.826 0.00 0.00 0.00 2.85
2176 2384 3.274288 CCACATCTCTTTGTAGGGCTTC 58.726 50.000 0.00 0.00 0.00 3.86
2177 2385 2.619074 GCCACATCTCTTTGTAGGGCTT 60.619 50.000 0.00 0.00 36.34 4.35
2178 2386 1.065126 GCCACATCTCTTTGTAGGGCT 60.065 52.381 0.00 0.00 36.34 5.19
2179 2387 1.383523 GCCACATCTCTTTGTAGGGC 58.616 55.000 0.00 0.00 33.25 5.19
2180 2388 1.656652 CGCCACATCTCTTTGTAGGG 58.343 55.000 0.00 0.00 0.00 3.53
2181 2389 1.009829 GCGCCACATCTCTTTGTAGG 58.990 55.000 0.00 0.00 0.00 3.18
2185 2393 0.674581 TCAGGCGCCACATCTCTTTG 60.675 55.000 31.54 14.96 0.00 2.77
2187 2395 0.254178 ATTCAGGCGCCACATCTCTT 59.746 50.000 31.54 0.76 0.00 2.85
2207 2415 4.202367 GGAAACTGGGACTATGTATCAGGG 60.202 50.000 0.00 0.00 0.00 4.45
2232 2440 2.087646 GGACATCTTCCTTGCCTGAAC 58.912 52.381 0.00 0.00 41.95 3.18
2255 2463 9.988815 CTGTCTAAGGTTTGCTGTAATCTATAT 57.011 33.333 0.00 0.00 0.00 0.86
2286 2494 1.134946 GCTGGGAAATTGGGACGAATG 59.865 52.381 0.00 0.00 0.00 2.67
2324 2533 2.122768 AGAGGACTGTTGATCATCCCC 58.877 52.381 9.09 0.00 30.99 4.81
2340 2549 3.011119 AGCTTGTACTGTCGAGTAGAGG 58.989 50.000 3.79 0.00 35.24 3.69
2454 2687 0.748005 TGCAGGCGGCCTATTCTTTC 60.748 55.000 23.37 5.62 43.89 2.62
2458 2691 2.263741 CCATGCAGGCGGCCTATTC 61.264 63.158 23.37 14.11 43.89 1.75
2527 2760 2.215604 CGAGTTCATCGTCGTCGGC 61.216 63.158 1.55 0.00 46.62 5.54
2576 2809 4.271696 TGAGGATGGTAAAGACACACAG 57.728 45.455 0.00 0.00 0.00 3.66
2578 2811 5.091261 AGATGAGGATGGTAAAGACACAC 57.909 43.478 0.00 0.00 0.00 3.82
2581 2814 4.626287 GCCAAGATGAGGATGGTAAAGACA 60.626 45.833 0.00 0.00 36.57 3.41
2617 2850 0.970937 TGCTACTTCCCCCTCTGACG 60.971 60.000 0.00 0.00 0.00 4.35
2621 2854 0.548510 GCAATGCTACTTCCCCCTCT 59.451 55.000 0.00 0.00 0.00 3.69
2632 2865 4.336433 GCCATTCTTCAGTAAGCAATGCTA 59.664 41.667 8.68 0.00 38.25 3.49
2660 2893 1.461091 TTCAGGAAGCGACCGACACT 61.461 55.000 0.00 0.00 34.73 3.55
2662 2895 0.320374 AATTCAGGAAGCGACCGACA 59.680 50.000 0.00 0.00 34.73 4.35
2730 2964 3.695556 TCTCTCTCTCTCTGCACTGAATG 59.304 47.826 0.00 0.00 0.00 2.67
2734 2968 2.941064 CTCTCTCTCTCTCTCTGCACTG 59.059 54.545 0.00 0.00 0.00 3.66
2777 3029 8.352201 TCTGTAAAAACTGGAGAATTTCACATG 58.648 33.333 0.00 0.00 0.00 3.21
2778 3030 8.352942 GTCTGTAAAAACTGGAGAATTTCACAT 58.647 33.333 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.