Multiple sequence alignment - TraesCS4A01G341000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G341000 chr4A 100.000 4705 0 0 1 4705 621770727 621766023 0.000000e+00 8689
1 TraesCS4A01G341000 chr4A 95.833 264 10 1 3656 3918 45419839 45420102 4.350000e-115 425
2 TraesCS4A01G341000 chr4A 95.817 263 10 1 3656 3917 107265043 107265305 1.570000e-114 424
3 TraesCS4A01G341000 chr5D 92.490 1944 92 20 1751 3663 547069928 547071848 0.000000e+00 2732
4 TraesCS4A01G341000 chr5D 94.356 567 30 1 846 1410 547069069 547069635 0.000000e+00 869
5 TraesCS4A01G341000 chr5D 90.745 443 39 2 1 442 547068381 547068822 1.460000e-164 590
6 TraesCS4A01G341000 chr5D 87.621 517 51 7 2646 3157 547207608 547208116 5.240000e-164 588
7 TraesCS4A01G341000 chr5D 88.517 418 34 9 3255 3663 547208152 547208564 1.180000e-135 494
8 TraesCS4A01G341000 chr5D 90.087 343 32 1 4351 4691 547208889 547209231 1.200000e-120 444
9 TraesCS4A01G341000 chr5D 87.692 325 36 3 79 400 547069278 547069601 4.440000e-100 375
10 TraesCS4A01G341000 chr5D 90.698 258 21 3 4361 4617 547074550 547074805 1.620000e-89 340
11 TraesCS4A01G341000 chr5D 83.918 342 28 8 3916 4253 547208584 547208902 7.650000e-78 302
12 TraesCS4A01G341000 chr5D 86.829 205 12 3 3916 4120 547071868 547072057 1.030000e-51 215
13 TraesCS4A01G341000 chr5D 86.087 115 13 3 1688 1801 460064227 460064339 2.300000e-23 121
14 TraesCS4A01G341000 chr5B 92.129 1893 90 23 1806 3663 690261221 690263089 0.000000e+00 2615
15 TraesCS4A01G341000 chr5B 89.651 831 72 12 1 824 690259161 690259984 0.000000e+00 1046
16 TraesCS4A01G341000 chr5B 94.677 526 24 3 887 1410 690260235 690260758 0.000000e+00 813
17 TraesCS4A01G341000 chr5B 80.262 993 131 22 398 1376 690258619 690259560 0.000000e+00 688
18 TraesCS4A01G341000 chr5B 84.756 328 28 10 1504 1821 690260757 690261072 4.570000e-80 309
19 TraesCS4A01G341000 chr5B 84.257 343 26 6 3916 4254 690263109 690263427 4.570000e-80 309
20 TraesCS4A01G341000 chr5B 88.492 252 26 2 4351 4601 690263697 690263946 7.650000e-78 302
21 TraesCS4A01G341000 chr5B 84.211 171 15 5 3971 4141 690263482 690263640 6.300000e-34 156
22 TraesCS4A01G341000 chr5B 89.720 107 11 0 1691 1797 55370938 55371044 2.280000e-28 137
23 TraesCS4A01G341000 chr5B 90.722 97 9 0 1409 1505 701195425 701195329 3.820000e-26 130
24 TraesCS4A01G341000 chr5B 87.000 100 11 2 1407 1505 701195327 701195425 1.380000e-20 111
25 TraesCS4A01G341000 chr2B 96.958 263 7 1 3656 3917 450718494 450718232 1.550000e-119 440
26 TraesCS4A01G341000 chr2B 92.857 98 5 1 1409 1506 146666542 146666637 1.770000e-29 141
27 TraesCS4A01G341000 chr2B 89.247 93 8 2 1416 1506 257640115 257640207 1.070000e-21 115
28 TraesCS4A01G341000 chr5A 96.255 267 9 1 3654 3919 596587566 596587300 2.010000e-118 436
29 TraesCS4A01G341000 chr3A 96.241 266 9 1 3656 3920 333328314 333328049 7.230000e-118 435
30 TraesCS4A01G341000 chr6B 95.833 264 10 1 3656 3918 712457960 712458223 4.350000e-115 425
31 TraesCS4A01G341000 chr1A 95.833 264 10 1 3656 3918 569341931 569341668 4.350000e-115 425
32 TraesCS4A01G341000 chr1A 87.850 107 13 0 1691 1797 352174093 352174199 4.940000e-25 126
33 TraesCS4A01G341000 chrUn 94.224 277 14 2 3642 3917 83541100 83540825 5.630000e-114 422
34 TraesCS4A01G341000 chr7A 94.224 277 14 2 3642 3917 722353191 722352916 5.630000e-114 422
35 TraesCS4A01G341000 chr7A 88.430 121 14 0 1683 1803 48103188 48103068 3.790000e-31 147
36 TraesCS4A01G341000 chr7A 86.239 109 12 3 1399 1505 689978601 689978494 1.070000e-21 115
37 TraesCS4A01G341000 chr1B 88.618 123 11 3 1691 1811 465698736 465698857 3.790000e-31 147
38 TraesCS4A01G341000 chr1B 88.785 107 12 0 1691 1797 160325218 160325324 1.060000e-26 132
39 TraesCS4A01G341000 chr1D 87.805 123 12 3 1691 1811 345266775 345266654 1.770000e-29 141
40 TraesCS4A01G341000 chr1D 88.785 107 12 0 1691 1797 128529211 128529105 1.060000e-26 132
41 TraesCS4A01G341000 chr7D 88.393 112 11 1 1409 1518 25322411 25322300 2.950000e-27 134
42 TraesCS4A01G341000 chr6A 90.291 103 8 2 1406 1506 598572773 598572875 2.950000e-27 134
43 TraesCS4A01G341000 chr2D 88.073 109 12 1 1691 1798 412473858 412473750 1.370000e-25 128
44 TraesCS4A01G341000 chr7B 85.124 121 11 6 1391 1508 743364673 743364789 2.970000e-22 117
45 TraesCS4A01G341000 chr4B 85.714 98 13 1 1409 1505 441677294 441677197 8.330000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G341000 chr4A 621766023 621770727 4704 True 8689.00 8689 100.000000 1 4705 1 chr4A.!!$R1 4704
1 TraesCS4A01G341000 chr5D 547068381 547074805 6424 False 853.50 2732 90.468333 1 4617 6 chr5D.!!$F2 4616
2 TraesCS4A01G341000 chr5D 547207608 547209231 1623 False 457.00 588 87.535750 2646 4691 4 chr5D.!!$F3 2045
3 TraesCS4A01G341000 chr5B 690258619 690263946 5327 False 779.75 2615 87.304375 1 4601 8 chr5B.!!$F3 4600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 1624 0.336392 GGGCTGAAAATCCCCTTCCT 59.664 55.0 0.00 0.00 36.5 3.36 F
1424 2180 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.0 0.00 0.00 0.0 4.55 F
1439 2195 0.244450 TCCGATTTACTTGTCGCGGT 59.756 50.0 6.13 0.00 39.7 5.68 F
2458 3462 0.978907 TTTGGGGTAACGTCTCCTCC 59.021 55.0 6.42 7.59 37.6 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 3443 0.978907 GGAGGAGACGTTACCCCAAA 59.021 55.000 8.07 0.0 0.00 3.28 R
2629 3643 3.829601 AGGTCCCGAGATGATATCTGAAC 59.170 47.826 3.98 0.0 40.38 3.18 R
2827 3847 3.933332 CCTGTAATCTTGAGAAACGGGAC 59.067 47.826 14.87 0.0 40.33 4.46 R
3891 4927 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.0 41.33 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 574 2.441532 TTCTACTCTCCCGGCCCG 60.442 66.667 0.00 0.00 0.00 6.13
51 594 1.285373 GACCTCTCAGTCCTCACCCTA 59.715 57.143 0.00 0.00 0.00 3.53
52 595 1.286553 ACCTCTCAGTCCTCACCCTAG 59.713 57.143 0.00 0.00 0.00 3.02
64 607 0.631212 CACCCTAGCCCCCTTCATTT 59.369 55.000 0.00 0.00 0.00 2.32
68 611 1.077068 TAGCCCCCTTCATTTGCCG 60.077 57.895 0.00 0.00 0.00 5.69
71 614 1.000896 CCCCCTTCATTTGCCGTCT 60.001 57.895 0.00 0.00 0.00 4.18
77 620 1.470098 CTTCATTTGCCGTCTTCCCAG 59.530 52.381 0.00 0.00 0.00 4.45
98 641 0.743688 GGCGAGATCTGAGAGCTCAA 59.256 55.000 25.21 2.38 44.21 3.02
205 749 2.703007 GGTGCTACTCCTCAAGATCCAT 59.297 50.000 0.00 0.00 0.00 3.41
255 799 4.466015 GGCCTTGGAACCAGAAATTCATAA 59.534 41.667 0.00 0.00 0.00 1.90
296 840 7.907045 CAGTCAGTGAGGATAAATTTGATTTCG 59.093 37.037 0.00 0.00 33.82 3.46
385 929 3.186409 TCAGAATTACACAGTTTGCGCTC 59.814 43.478 9.73 0.00 0.00 5.03
389 933 2.455674 TACACAGTTTGCGCTCAGAT 57.544 45.000 9.73 0.00 0.00 2.90
406 950 4.746729 TCAGATAATGTTGGTGCAAATGC 58.253 39.130 0.00 0.00 42.50 3.56
413 957 1.040646 TTGGTGCAAATGCCGGTTTA 58.959 45.000 1.90 0.00 41.18 2.01
415 959 2.447443 TGGTGCAAATGCCGGTTTATA 58.553 42.857 1.90 0.00 41.18 0.98
419 963 3.129638 GTGCAAATGCCGGTTTATAAGGA 59.870 43.478 1.90 0.00 41.18 3.36
437 981 9.832445 TTATAAGGATTGTGATTCTCTTGGTAC 57.168 33.333 0.00 0.00 0.00 3.34
443 987 1.899814 TGATTCTCTTGGTACCACGCT 59.100 47.619 16.04 0.00 0.00 5.07
464 1009 4.801891 CTGACATGTTTGATTTGGTCAGG 58.198 43.478 0.00 0.00 45.11 3.86
466 1011 2.299867 ACATGTTTGATTTGGTCAGGGC 59.700 45.455 0.00 0.00 38.29 5.19
470 1015 3.390639 TGTTTGATTTGGTCAGGGCAATT 59.609 39.130 0.00 0.00 38.29 2.32
482 1027 5.455326 GGTCAGGGCAATTATGACATCTAGT 60.455 44.000 6.86 0.00 44.08 2.57
487 1032 6.043706 AGGGCAATTATGACATCTAGTAAGCT 59.956 38.462 0.00 0.00 35.69 3.74
519 1064 7.176340 CCATCCATTTCTCTTCTTTTCTTCTGT 59.824 37.037 0.00 0.00 0.00 3.41
556 1102 7.922278 ACGAAACAACGTATTTCATAGCCTATA 59.078 33.333 19.56 0.00 44.72 1.31
583 1130 6.241207 TGAACGAGTGAGATTCCATTTTTC 57.759 37.500 0.00 0.00 0.00 2.29
595 1142 8.341892 AGATTCCATTTTTCTCTCCTTACAAC 57.658 34.615 0.00 0.00 0.00 3.32
608 1155 5.826737 TCTCCTTACAACCGGATAGTTAGAG 59.173 44.000 9.46 6.92 0.00 2.43
626 1173 8.608844 AGTTAGAGCCGGAAAATAGATAATTG 57.391 34.615 5.05 0.00 0.00 2.32
633 1180 6.039382 GCCGGAAAATAGATAATTGACCAACT 59.961 38.462 5.05 0.00 0.00 3.16
661 1208 9.787532 CATATTACCAACTAACAAAATGGTGAG 57.212 33.333 6.56 0.00 45.43 3.51
676 1223 2.854253 TGAGGAAGCTCACACCCTT 58.146 52.632 0.00 0.00 0.00 3.95
677 1224 2.024176 TGAGGAAGCTCACACCCTTA 57.976 50.000 0.00 0.00 0.00 2.69
685 1232 5.452077 GGAAGCTCACACCCTTATACTACAG 60.452 48.000 0.00 0.00 0.00 2.74
693 1240 3.965347 ACCCTTATACTACAGCCGACATT 59.035 43.478 0.00 0.00 0.00 2.71
754 1304 9.717942 AAGCATTTTACCAAATTTGCACTTATA 57.282 25.926 12.92 0.00 34.30 0.98
755 1305 9.889128 AGCATTTTACCAAATTTGCACTTATAT 57.111 25.926 12.92 0.00 34.30 0.86
791 1341 7.067116 CACATTTCACATCAAACTGATTTTGC 58.933 34.615 0.00 0.00 43.90 3.68
871 1624 0.336392 GGGCTGAAAATCCCCTTCCT 59.664 55.000 0.00 0.00 36.50 3.36
872 1625 1.478631 GGCTGAAAATCCCCTTCCTG 58.521 55.000 0.00 0.00 0.00 3.86
890 1643 1.303282 GAAGAGGGACCGGCCAATT 59.697 57.895 15.49 7.48 38.95 2.32
1068 1821 2.329690 CGCCGACGAGATCTGAGG 59.670 66.667 0.00 0.00 43.93 3.86
1251 2004 7.909267 TCATGCAATTAGAGTTAAATCAGTCG 58.091 34.615 5.62 0.00 0.00 4.18
1278 2031 7.435192 GTGAGGGTGAATTTAGTTTCAGTTTTG 59.565 37.037 0.00 0.00 36.34 2.44
1302 2055 2.034053 TGTTGGTTTCTCGTTTCCATGC 59.966 45.455 0.00 0.00 0.00 4.06
1335 2089 0.519999 GTGCGCGCTCAGAAAATCTG 60.520 55.000 33.29 0.88 45.59 2.90
1357 2113 6.149973 TCTGATTTCAGCATTAGACAGTTTGG 59.850 38.462 2.60 0.00 43.46 3.28
1362 2118 2.040278 AGCATTAGACAGTTTGGGCTCA 59.960 45.455 0.00 0.00 0.00 4.26
1408 2164 7.490402 GCAAGCTATTCTAATTTTGATGCAACT 59.510 33.333 0.00 0.00 0.00 3.16
1411 2167 9.401058 AGCTATTCTAATTTTGATGCAACTACT 57.599 29.630 0.00 0.00 0.00 2.57
1412 2168 9.657121 GCTATTCTAATTTTGATGCAACTACTC 57.343 33.333 0.00 0.00 0.00 2.59
1414 2170 7.391148 TTCTAATTTTGATGCAACTACTCCC 57.609 36.000 0.00 0.00 0.00 4.30
1415 2171 6.721318 TCTAATTTTGATGCAACTACTCCCT 58.279 36.000 0.00 0.00 0.00 4.20
1416 2172 5.904362 AATTTTGATGCAACTACTCCCTC 57.096 39.130 0.00 0.00 0.00 4.30
1417 2173 3.350219 TTTGATGCAACTACTCCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
1418 2174 0.824109 TGATGCAACTACTCCCTCCG 59.176 55.000 0.00 0.00 0.00 4.63
1419 2175 0.824759 GATGCAACTACTCCCTCCGT 59.175 55.000 0.00 0.00 0.00 4.69
1420 2176 1.207329 GATGCAACTACTCCCTCCGTT 59.793 52.381 0.00 0.00 0.00 4.44
1421 2177 0.606604 TGCAACTACTCCCTCCGTTC 59.393 55.000 0.00 0.00 0.00 3.95
1422 2178 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
1423 2179 0.172803 CAACTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
1424 2180 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
1425 2181 0.258194 ACTACTCCCTCCGTTCCGAT 59.742 55.000 0.00 0.00 0.00 4.18
1426 2182 1.341778 ACTACTCCCTCCGTTCCGATT 60.342 52.381 0.00 0.00 0.00 3.34
1427 2183 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
1428 2184 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
1429 2185 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
1430 2186 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
1431 2187 2.167900 CTCCCTCCGTTCCGATTTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1432 2188 2.093869 TCCCTCCGTTCCGATTTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1433 2189 2.354403 CCCTCCGTTCCGATTTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1434 2190 2.928116 CCTCCGTTCCGATTTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1435 2191 2.597305 CTCCGTTCCGATTTACTTGTCG 59.403 50.000 0.00 0.00 37.58 4.35
1436 2192 1.060122 CCGTTCCGATTTACTTGTCGC 59.940 52.381 0.00 0.00 36.57 5.19
1437 2193 1.266211 CGTTCCGATTTACTTGTCGCG 60.266 52.381 0.00 0.00 36.57 5.87
1438 2194 1.060122 GTTCCGATTTACTTGTCGCGG 59.940 52.381 6.13 0.00 40.06 6.46
1439 2195 0.244450 TCCGATTTACTTGTCGCGGT 59.756 50.000 6.13 0.00 39.70 5.68
1440 2196 1.073177 CCGATTTACTTGTCGCGGTT 58.927 50.000 6.13 0.00 36.57 4.44
1441 2197 1.461897 CCGATTTACTTGTCGCGGTTT 59.538 47.619 6.13 0.00 36.57 3.27
1442 2198 2.096119 CCGATTTACTTGTCGCGGTTTT 60.096 45.455 6.13 0.00 36.57 2.43
1443 2199 3.123284 CCGATTTACTTGTCGCGGTTTTA 59.877 43.478 6.13 0.00 36.57 1.52
1444 2200 4.320491 CGATTTACTTGTCGCGGTTTTAG 58.680 43.478 6.13 0.00 0.00 1.85
1445 2201 4.143263 CGATTTACTTGTCGCGGTTTTAGT 60.143 41.667 6.13 5.92 0.00 2.24
1446 2202 5.613142 CGATTTACTTGTCGCGGTTTTAGTT 60.613 40.000 6.13 0.00 0.00 2.24
1447 2203 4.713854 TTACTTGTCGCGGTTTTAGTTC 57.286 40.909 6.13 0.00 0.00 3.01
1448 2204 2.553086 ACTTGTCGCGGTTTTAGTTCA 58.447 42.857 6.13 0.00 0.00 3.18
1449 2205 2.542595 ACTTGTCGCGGTTTTAGTTCAG 59.457 45.455 6.13 0.00 0.00 3.02
1450 2206 2.228138 TGTCGCGGTTTTAGTTCAGT 57.772 45.000 6.13 0.00 0.00 3.41
1451 2207 2.553086 TGTCGCGGTTTTAGTTCAGTT 58.447 42.857 6.13 0.00 0.00 3.16
1452 2208 2.937799 TGTCGCGGTTTTAGTTCAGTTT 59.062 40.909 6.13 0.00 0.00 2.66
1453 2209 3.374678 TGTCGCGGTTTTAGTTCAGTTTT 59.625 39.130 6.13 0.00 0.00 2.43
1454 2210 4.569966 TGTCGCGGTTTTAGTTCAGTTTTA 59.430 37.500 6.13 0.00 0.00 1.52
1455 2211 5.135330 GTCGCGGTTTTAGTTCAGTTTTAG 58.865 41.667 6.13 0.00 0.00 1.85
1456 2212 4.810491 TCGCGGTTTTAGTTCAGTTTTAGT 59.190 37.500 6.13 0.00 0.00 2.24
1457 2213 5.294060 TCGCGGTTTTAGTTCAGTTTTAGTT 59.706 36.000 6.13 0.00 0.00 2.24
1458 2214 5.618395 CGCGGTTTTAGTTCAGTTTTAGTTC 59.382 40.000 0.00 0.00 0.00 3.01
1459 2215 6.488817 GCGGTTTTAGTTCAGTTTTAGTTCA 58.511 36.000 0.00 0.00 0.00 3.18
1460 2216 6.968335 GCGGTTTTAGTTCAGTTTTAGTTCAA 59.032 34.615 0.00 0.00 0.00 2.69
1461 2217 7.485595 GCGGTTTTAGTTCAGTTTTAGTTCAAA 59.514 33.333 0.00 0.00 0.00 2.69
1462 2218 9.511144 CGGTTTTAGTTCAGTTTTAGTTCAAAT 57.489 29.630 0.00 0.00 0.00 2.32
1481 2237 7.922505 TCAAATTTGAACTAAAACCATGACG 57.077 32.000 18.45 0.00 33.55 4.35
1482 2238 7.708051 TCAAATTTGAACTAAAACCATGACGA 58.292 30.769 18.45 0.00 33.55 4.20
1483 2239 7.860373 TCAAATTTGAACTAAAACCATGACGAG 59.140 33.333 18.45 0.00 33.55 4.18
1484 2240 6.877611 ATTTGAACTAAAACCATGACGAGT 57.122 33.333 0.00 0.00 0.00 4.18
1485 2241 7.972832 ATTTGAACTAAAACCATGACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
1486 2242 7.789273 TTTGAACTAAAACCATGACGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
1487 2243 7.789273 TTGAACTAAAACCATGACGAGTAAA 57.211 32.000 0.00 0.00 0.00 2.01
1488 2244 7.972832 TGAACTAAAACCATGACGAGTAAAT 57.027 32.000 0.00 0.00 0.00 1.40
1489 2245 8.025243 TGAACTAAAACCATGACGAGTAAATC 57.975 34.615 0.00 0.00 0.00 2.17
1597 2354 1.740025 GCCAGTTCTGTAACAGCATCC 59.260 52.381 0.00 0.00 38.12 3.51
1599 2356 2.026822 CCAGTTCTGTAACAGCATCCCT 60.027 50.000 0.00 0.00 38.12 4.20
1604 2361 2.906389 TCTGTAACAGCATCCCTTCACT 59.094 45.455 0.00 0.00 0.00 3.41
1616 2373 2.231478 TCCCTTCACTGCTAAAGAGTCG 59.769 50.000 0.00 0.00 0.00 4.18
1629 2386 6.038382 TGCTAAAGAGTCGAATCCTGTAGTAG 59.962 42.308 9.63 3.95 0.00 2.57
1643 2400 4.081642 CCTGTAGTAGAAGCCAACTTGCTA 60.082 45.833 0.00 0.00 41.80 3.49
1647 2404 4.256920 AGTAGAAGCCAACTTGCTACATG 58.743 43.478 0.00 0.00 41.80 3.21
1724 2544 5.122396 GTCCTGAATTAGTTGACGCTCAAAT 59.878 40.000 6.10 6.10 38.22 2.32
1742 2562 7.316640 GCTCAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
1743 2563 7.815068 GCTCAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
1745 2565 9.692749 TCAAATGGATGTATCTAGACGTATTTC 57.307 33.333 0.00 0.00 0.00 2.17
1746 2566 9.476202 CAAATGGATGTATCTAGACGTATTTCA 57.524 33.333 0.00 0.00 0.00 2.69
1747 2567 9.698309 AAATGGATGTATCTAGACGTATTTCAG 57.302 33.333 0.00 0.00 0.00 3.02
1748 2568 7.818997 TGGATGTATCTAGACGTATTTCAGT 57.181 36.000 0.00 0.00 0.00 3.41
1749 2569 7.649057 TGGATGTATCTAGACGTATTTCAGTG 58.351 38.462 0.00 0.00 0.00 3.66
1751 2571 6.694877 TGTATCTAGACGTATTTCAGTGCT 57.305 37.500 0.00 0.00 0.00 4.40
1752 2572 7.797038 TGTATCTAGACGTATTTCAGTGCTA 57.203 36.000 0.00 0.00 0.00 3.49
1754 2574 7.713942 TGTATCTAGACGTATTTCAGTGCTAGA 59.286 37.037 0.00 7.14 37.74 2.43
1755 2575 6.360844 TCTAGACGTATTTCAGTGCTAGAC 57.639 41.667 0.00 0.00 30.90 2.59
1756 2576 5.878669 TCTAGACGTATTTCAGTGCTAGACA 59.121 40.000 0.00 0.00 30.90 3.41
1783 2603 3.254411 TGTTTGCGCATCAACTAATTCCA 59.746 39.130 21.84 1.63 33.73 3.53
1809 2794 5.488341 TGGAGGAAGTAATTAGTTGTGCTC 58.512 41.667 10.30 7.47 0.00 4.26
1824 2809 5.104941 AGTTGTGCTCATACTACTGGCAATA 60.105 40.000 0.00 0.00 35.77 1.90
1893 2878 2.299326 AATTCCCTGCAGGCATATCC 57.701 50.000 28.39 0.00 34.51 2.59
1914 2899 3.932545 CTGAAGACGCAGGAGCTATAT 57.067 47.619 0.00 0.00 39.10 0.86
2127 3112 2.978156 TGGTTCTGGCTTTCCTCATT 57.022 45.000 0.00 0.00 0.00 2.57
2197 3189 5.379187 TGCTCACTATGTTATGATGCCAAT 58.621 37.500 0.00 0.00 0.00 3.16
2220 3212 2.673775 TGACCTTTCTGAATTGCCCA 57.326 45.000 0.00 0.00 0.00 5.36
2222 3214 4.314522 TGACCTTTCTGAATTGCCCATA 57.685 40.909 0.00 0.00 0.00 2.74
2223 3215 4.272489 TGACCTTTCTGAATTGCCCATAG 58.728 43.478 0.00 0.00 0.00 2.23
2230 3225 4.661222 TCTGAATTGCCCATAGTTGTTGA 58.339 39.130 0.00 0.00 0.00 3.18
2294 3298 5.220710 TGCTCTCTTTAGATAGAATGCCC 57.779 43.478 0.00 0.00 0.00 5.36
2409 3413 2.221981 GCTACAGCGCACAAGGAATATC 59.778 50.000 11.47 0.00 0.00 1.63
2439 3443 4.922206 TGACTGGCCAATATGTCTTCTTT 58.078 39.130 20.06 0.00 0.00 2.52
2458 3462 0.978907 TTTGGGGTAACGTCTCCTCC 59.021 55.000 6.42 7.59 37.60 4.30
2473 3477 5.932303 CGTCTCCTCCTTTTATTTGAAGACA 59.068 40.000 0.00 0.00 0.00 3.41
2478 3482 9.231297 CTCCTCCTTTTATTTGAAGACACATAA 57.769 33.333 0.00 0.00 30.11 1.90
2479 3483 9.753674 TCCTCCTTTTATTTGAAGACACATAAT 57.246 29.630 0.00 0.00 31.57 1.28
2490 3494 9.979578 TTTGAAGACACATAATTATGTTGCTTT 57.020 25.926 27.14 19.78 43.99 3.51
2491 3495 9.979578 TTGAAGACACATAATTATGTTGCTTTT 57.020 25.926 27.14 18.62 43.99 2.27
2492 3496 9.409312 TGAAGACACATAATTATGTTGCTTTTG 57.591 29.630 27.14 18.75 43.99 2.44
2493 3497 7.816945 AGACACATAATTATGTTGCTTTTGC 57.183 32.000 25.20 10.51 43.99 3.68
2495 3499 8.036575 AGACACATAATTATGTTGCTTTTGCAT 58.963 29.630 25.20 5.39 46.79 3.96
2496 3500 8.550710 ACACATAATTATGTTGCTTTTGCATT 57.449 26.923 25.20 0.12 46.79 3.56
2497 3501 8.444715 ACACATAATTATGTTGCTTTTGCATTG 58.555 29.630 25.20 13.31 46.79 2.82
2498 3502 8.657729 CACATAATTATGTTGCTTTTGCATTGA 58.342 29.630 25.20 0.00 46.79 2.57
2499 3503 9.217278 ACATAATTATGTTGCTTTTGCATTGAA 57.783 25.926 22.70 0.00 43.99 2.69
2510 3514 7.771219 GCTTTTGCATTGAAAGAAATAAAGC 57.229 32.000 12.50 10.14 46.58 3.51
2512 3516 7.743400 GCTTTTGCATTGAAAGAAATAAAGCTC 59.257 33.333 12.50 0.00 46.58 4.09
2519 3523 8.950210 CATTGAAAGAAATAAAGCTCAGGACTA 58.050 33.333 0.00 0.00 0.00 2.59
2529 3533 9.819267 AATAAAGCTCAGGACTATACTTTGTAC 57.181 33.333 0.00 0.00 0.00 2.90
2544 3550 4.279169 ACTTTGTACGATAATAGCGGCCTA 59.721 41.667 0.00 0.00 0.00 3.93
2553 3559 7.145985 ACGATAATAGCGGCCTATACATAATG 58.854 38.462 0.00 0.00 33.14 1.90
2559 3565 6.985188 AGCGGCCTATACATAATGTAATTG 57.015 37.500 0.00 0.00 36.99 2.32
2629 3643 9.551734 TGAATCTTCTATTGTCATATTCTGGTG 57.448 33.333 0.00 0.00 0.00 4.17
2660 3674 1.430992 TCTCGGGACCTTGTTTTCCT 58.569 50.000 0.00 0.00 31.90 3.36
2665 3679 3.382227 TCGGGACCTTGTTTTCCTTTTTC 59.618 43.478 0.00 0.00 31.90 2.29
2827 3847 3.452755 TGAACTCTATGCACCATACCG 57.547 47.619 0.00 0.00 0.00 4.02
2843 3863 0.974383 ACCGTCCCGTTTCTCAAGAT 59.026 50.000 0.00 0.00 0.00 2.40
3036 4056 6.773976 GGAATTTGTCCAGTCAATCCATAA 57.226 37.500 0.00 0.00 46.97 1.90
3276 4303 7.624549 ACACTCATCTCTTGGTTGTATATGTT 58.375 34.615 0.00 0.00 0.00 2.71
3480 4510 2.752903 ACGGCTTGCTTAACTTAATGGG 59.247 45.455 0.00 0.00 0.00 4.00
3490 4520 6.013206 TGCTTAACTTAATGGGTAGACAGGAA 60.013 38.462 0.00 0.00 0.00 3.36
3645 4681 2.930826 ACTGTTTGGAACTCGATGGT 57.069 45.000 0.00 0.00 0.00 3.55
3647 4683 1.197721 CTGTTTGGAACTCGATGGTGC 59.802 52.381 0.00 0.00 0.00 5.01
3655 4691 1.744368 CTCGATGGTGCTGCTGCTT 60.744 57.895 17.00 0.00 40.48 3.91
3656 4692 0.460811 CTCGATGGTGCTGCTGCTTA 60.461 55.000 17.00 3.52 40.48 3.09
3657 4693 0.740868 TCGATGGTGCTGCTGCTTAC 60.741 55.000 17.00 7.29 40.48 2.34
3658 4694 0.742281 CGATGGTGCTGCTGCTTACT 60.742 55.000 17.00 0.00 40.48 2.24
3659 4695 1.012841 GATGGTGCTGCTGCTTACTC 58.987 55.000 17.00 5.29 40.48 2.59
3660 4696 0.393537 ATGGTGCTGCTGCTTACTCC 60.394 55.000 17.00 11.03 40.48 3.85
3665 4701 1.142748 CTGCTGCTTACTCCCTCCG 59.857 63.158 0.00 0.00 0.00 4.63
3667 4703 1.142097 GCTGCTTACTCCCTCCGTC 59.858 63.158 0.00 0.00 0.00 4.79
3668 4704 1.817209 CTGCTTACTCCCTCCGTCC 59.183 63.158 0.00 0.00 0.00 4.79
3670 4706 2.806237 CTTACTCCCTCCGTCCGC 59.194 66.667 0.00 0.00 0.00 5.54
3671 4707 3.122250 CTTACTCCCTCCGTCCGCG 62.122 68.421 0.00 0.00 37.95 6.46
3672 4708 3.626996 TTACTCCCTCCGTCCGCGA 62.627 63.158 8.23 0.00 41.33 5.87
3674 4710 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
3675 4711 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
3676 4712 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
3677 4713 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
3678 4714 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
3679 4715 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
3680 4716 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
3681 4717 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
3682 4718 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
3683 4719 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
3684 4720 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
3685 4721 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
3686 4722 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
3687 4723 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
3688 4724 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
3689 4725 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
3690 4726 4.537965 CGCGAATAAGTGTACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
3691 4727 4.976731 CGCGAATAAGTGTACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
3692 4728 5.459107 CGCGAATAAGTGTACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
3693 4729 6.019801 CGCGAATAAGTGTACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
3694 4730 7.119997 GCGAATAAGTGTACATCTAGCTTTTG 58.880 38.462 0.00 0.00 0.00 2.44
3695 4731 7.201530 GCGAATAAGTGTACATCTAGCTTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
3696 4732 8.656849 CGAATAAGTGTACATCTAGCTTTTGTT 58.343 33.333 0.00 0.00 0.00 2.83
3702 4738 9.338622 AGTGTACATCTAGCTTTTGTTTTAAGT 57.661 29.630 0.00 0.00 0.00 2.24
3703 4739 9.595357 GTGTACATCTAGCTTTTGTTTTAAGTC 57.405 33.333 0.00 0.00 0.00 3.01
3704 4740 9.332502 TGTACATCTAGCTTTTGTTTTAAGTCA 57.667 29.630 0.00 0.00 0.00 3.41
3707 4743 8.352942 ACATCTAGCTTTTGTTTTAAGTCAAGG 58.647 33.333 0.00 0.00 0.00 3.61
3708 4744 7.875327 TCTAGCTTTTGTTTTAAGTCAAGGT 57.125 32.000 0.00 0.00 0.00 3.50
3709 4745 8.288689 TCTAGCTTTTGTTTTAAGTCAAGGTT 57.711 30.769 0.00 0.00 0.00 3.50
3710 4746 8.745590 TCTAGCTTTTGTTTTAAGTCAAGGTTT 58.254 29.630 0.00 0.00 0.00 3.27
3711 4747 9.366216 CTAGCTTTTGTTTTAAGTCAAGGTTTT 57.634 29.630 0.00 0.00 0.00 2.43
3713 4749 9.713713 AGCTTTTGTTTTAAGTCAAGGTTTTAA 57.286 25.926 0.00 0.00 0.00 1.52
3726 4762 7.279750 TCAAGGTTTTAATACTTTGACCACC 57.720 36.000 16.08 0.00 38.65 4.61
3727 4763 7.064229 TCAAGGTTTTAATACTTTGACCACCT 58.936 34.615 16.08 0.00 38.65 4.00
3728 4764 7.562088 TCAAGGTTTTAATACTTTGACCACCTT 59.438 33.333 16.08 0.00 41.75 3.50
3729 4765 7.907841 AGGTTTTAATACTTTGACCACCTTT 57.092 32.000 0.00 0.00 0.00 3.11
3730 4766 8.999905 AGGTTTTAATACTTTGACCACCTTTA 57.000 30.769 0.00 0.00 0.00 1.85
3731 4767 9.596308 AGGTTTTAATACTTTGACCACCTTTAT 57.404 29.630 0.00 0.00 0.00 1.40
3738 4774 9.462606 AATACTTTGACCACCTTTATAGGAAAG 57.537 33.333 6.19 7.36 45.05 2.62
3739 4775 7.086685 ACTTTGACCACCTTTATAGGAAAGA 57.913 36.000 6.19 0.00 45.05 2.52
3740 4776 7.168905 ACTTTGACCACCTTTATAGGAAAGAG 58.831 38.462 6.19 0.00 45.05 2.85
3741 4777 6.697641 TTGACCACCTTTATAGGAAAGAGT 57.302 37.500 6.19 0.00 45.05 3.24
3742 4778 7.801893 TTGACCACCTTTATAGGAAAGAGTA 57.198 36.000 6.19 0.00 45.05 2.59
3743 4779 7.801893 TGACCACCTTTATAGGAAAGAGTAA 57.198 36.000 6.19 0.00 45.05 2.24
3744 4780 8.209802 TGACCACCTTTATAGGAAAGAGTAAA 57.790 34.615 6.19 0.00 45.05 2.01
3745 4781 8.662255 TGACCACCTTTATAGGAAAGAGTAAAA 58.338 33.333 6.19 0.00 45.05 1.52
3746 4782 9.163899 GACCACCTTTATAGGAAAGAGTAAAAG 57.836 37.037 6.19 0.00 45.05 2.27
3747 4783 7.610692 ACCACCTTTATAGGAAAGAGTAAAAGC 59.389 37.037 6.19 0.00 45.05 3.51
3748 4784 7.829706 CCACCTTTATAGGAAAGAGTAAAAGCT 59.170 37.037 6.19 0.00 45.05 3.74
3749 4785 9.232473 CACCTTTATAGGAAAGAGTAAAAGCTT 57.768 33.333 6.19 0.00 45.05 3.74
3750 4786 9.809395 ACCTTTATAGGAAAGAGTAAAAGCTTT 57.191 29.630 5.69 5.69 45.05 3.51
3756 4792 6.925211 AGGAAAGAGTAAAAGCTTTTATGGC 58.075 36.000 29.16 21.33 35.35 4.40
3757 4793 6.493458 AGGAAAGAGTAAAAGCTTTTATGGCA 59.507 34.615 29.16 10.63 35.35 4.92
3758 4794 6.586463 GGAAAGAGTAAAAGCTTTTATGGCAC 59.414 38.462 29.16 20.41 35.35 5.01
3759 4795 5.644977 AGAGTAAAAGCTTTTATGGCACC 57.355 39.130 29.16 17.53 35.35 5.01
3760 4796 5.076873 AGAGTAAAAGCTTTTATGGCACCA 58.923 37.500 29.16 8.56 35.35 4.17
3761 4797 5.538433 AGAGTAAAAGCTTTTATGGCACCAA 59.462 36.000 29.16 7.88 35.35 3.67
3762 4798 6.041523 AGAGTAAAAGCTTTTATGGCACCAAA 59.958 34.615 29.16 7.19 35.35 3.28
3763 4799 6.768483 AGTAAAAGCTTTTATGGCACCAAAT 58.232 32.000 29.16 7.22 35.35 2.32
3764 4800 7.223584 AGTAAAAGCTTTTATGGCACCAAATT 58.776 30.769 29.16 5.36 35.35 1.82
3765 4801 8.371699 AGTAAAAGCTTTTATGGCACCAAATTA 58.628 29.630 29.16 6.11 35.35 1.40
3766 4802 7.671495 AAAAGCTTTTATGGCACCAAATTAG 57.329 32.000 22.70 0.00 0.00 1.73
3767 4803 4.758688 AGCTTTTATGGCACCAAATTAGC 58.241 39.130 10.11 10.11 0.00 3.09
3768 4804 4.222588 AGCTTTTATGGCACCAAATTAGCA 59.777 37.500 16.33 0.00 0.00 3.49
3769 4805 5.104817 AGCTTTTATGGCACCAAATTAGCAT 60.105 36.000 16.33 0.00 0.00 3.79
3770 4806 5.234972 GCTTTTATGGCACCAAATTAGCATC 59.765 40.000 12.03 0.00 0.00 3.91
3771 4807 5.929058 TTTATGGCACCAAATTAGCATCA 57.071 34.783 0.00 0.00 0.00 3.07
3772 4808 3.806625 ATGGCACCAAATTAGCATCAC 57.193 42.857 0.00 0.00 0.00 3.06
3773 4809 2.806434 TGGCACCAAATTAGCATCACT 58.194 42.857 0.00 0.00 0.00 3.41
3774 4810 2.492881 TGGCACCAAATTAGCATCACTG 59.507 45.455 0.00 0.00 0.00 3.66
3775 4811 2.754552 GGCACCAAATTAGCATCACTGA 59.245 45.455 0.00 0.00 0.00 3.41
3776 4812 3.382546 GGCACCAAATTAGCATCACTGAT 59.617 43.478 0.00 0.00 0.00 2.90
3777 4813 4.142093 GGCACCAAATTAGCATCACTGATT 60.142 41.667 0.00 0.00 36.20 2.57
3778 4814 5.413499 GCACCAAATTAGCATCACTGATTT 58.587 37.500 0.00 0.00 43.35 2.17
3786 4822 9.545105 AAATTAGCATCACTGATTTGTTTTGAA 57.455 25.926 0.00 0.00 41.59 2.69
3787 4823 9.545105 AATTAGCATCACTGATTTGTTTTGAAA 57.455 25.926 0.00 0.00 30.77 2.69
3788 4824 9.715121 ATTAGCATCACTGATTTGTTTTGAAAT 57.285 25.926 0.00 0.00 0.00 2.17
3789 4825 7.416154 AGCATCACTGATTTGTTTTGAAATG 57.584 32.000 0.00 0.00 0.00 2.32
3790 4826 6.987992 AGCATCACTGATTTGTTTTGAAATGT 59.012 30.769 0.00 0.00 0.00 2.71
3791 4827 8.143193 AGCATCACTGATTTGTTTTGAAATGTA 58.857 29.630 0.00 0.00 0.00 2.29
3792 4828 8.216453 GCATCACTGATTTGTTTTGAAATGTAC 58.784 33.333 0.00 0.00 0.00 2.90
3793 4829 9.467258 CATCACTGATTTGTTTTGAAATGTACT 57.533 29.630 0.00 0.00 0.00 2.73
3795 4831 9.868277 TCACTGATTTGTTTTGAAATGTACTTT 57.132 25.926 0.00 0.00 0.00 2.66
3899 4935 6.927294 GCAAAGGCTAGATGTACACTTATT 57.073 37.500 0.00 0.00 36.96 1.40
3900 4936 6.949449 GCAAAGGCTAGATGTACACTTATTC 58.051 40.000 0.00 0.00 36.96 1.75
3901 4937 6.292381 GCAAAGGCTAGATGTACACTTATTCG 60.292 42.308 0.00 0.00 36.96 3.34
3902 4938 4.872664 AGGCTAGATGTACACTTATTCGC 58.127 43.478 0.00 0.00 0.00 4.70
3903 4939 3.669122 GGCTAGATGTACACTTATTCGCG 59.331 47.826 0.00 0.00 0.00 5.87
3904 4940 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
3905 4941 4.556104 GCTAGATGTACACTTATTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
3906 4942 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
3907 4943 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
3908 4944 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
3909 4945 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
3910 4946 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
3911 4947 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
3912 4948 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
3913 4949 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
3914 4950 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
4045 5399 5.983720 CCATATTACAACCTCGAACTACCAG 59.016 44.000 0.00 0.00 0.00 4.00
4065 5419 5.594317 ACCAGCAAAGTCTAAAACACAATCT 59.406 36.000 0.00 0.00 0.00 2.40
4130 5484 4.217118 CAGGCTAGCTGAAACTGTTTGAAT 59.783 41.667 15.72 0.00 0.00 2.57
4141 5495 7.209475 TGAAACTGTTTGAATTTTGAGATCCC 58.791 34.615 11.03 0.00 0.00 3.85
4147 5501 6.072728 TGTTTGAATTTTGAGATCCCTGTACG 60.073 38.462 0.00 0.00 0.00 3.67
4199 5557 8.589701 AAAGATTAAAACCTACCAACCCATAG 57.410 34.615 0.00 0.00 0.00 2.23
4211 5569 5.133221 ACCAACCCATAGCATTCAATAGTC 58.867 41.667 0.00 0.00 0.00 2.59
4248 5606 7.736447 AACAATTCAGAGTGTAAAAGAGAGG 57.264 36.000 0.00 0.00 31.99 3.69
4249 5607 7.067496 ACAATTCAGAGTGTAAAAGAGAGGA 57.933 36.000 0.00 0.00 31.30 3.71
4250 5608 7.684529 ACAATTCAGAGTGTAAAAGAGAGGAT 58.315 34.615 0.00 0.00 31.30 3.24
4251 5609 8.160106 ACAATTCAGAGTGTAAAAGAGAGGATT 58.840 33.333 0.00 0.00 31.30 3.01
4252 5610 9.007901 CAATTCAGAGTGTAAAAGAGAGGATTT 57.992 33.333 0.00 0.00 0.00 2.17
4254 5612 6.702329 TCAGAGTGTAAAAGAGAGGATTTCC 58.298 40.000 0.00 0.00 0.00 3.13
4282 7048 6.897259 TTGAGAGTACGCAAAATATGTACC 57.103 37.500 0.00 0.00 39.36 3.34
4283 7049 6.216801 TGAGAGTACGCAAAATATGTACCT 57.783 37.500 0.00 0.00 39.36 3.08
4284 7050 6.636705 TGAGAGTACGCAAAATATGTACCTT 58.363 36.000 0.00 0.00 39.36 3.50
4285 7051 7.774134 TGAGAGTACGCAAAATATGTACCTTA 58.226 34.615 0.00 0.00 39.36 2.69
4286 7052 8.252417 TGAGAGTACGCAAAATATGTACCTTAA 58.748 33.333 0.00 0.00 39.36 1.85
4287 7053 8.416485 AGAGTACGCAAAATATGTACCTTAAC 57.584 34.615 0.00 0.00 39.36 2.01
4304 7070 6.890293 ACCTTAACTTTATAGAAGGCAGAGG 58.110 40.000 0.00 0.00 41.92 3.69
4305 7071 6.444171 ACCTTAACTTTATAGAAGGCAGAGGT 59.556 38.462 0.00 0.00 41.92 3.85
4307 7073 7.829706 CCTTAACTTTATAGAAGGCAGAGGTTT 59.170 37.037 0.00 0.00 32.54 3.27
4309 7075 9.886132 TTAACTTTATAGAAGGCAGAGGTTTAG 57.114 33.333 0.00 0.00 0.00 1.85
4310 7076 6.890293 ACTTTATAGAAGGCAGAGGTTTAGG 58.110 40.000 0.00 0.00 0.00 2.69
4316 7082 5.948842 AGAAGGCAGAGGTTTAGGTAAAAA 58.051 37.500 0.00 0.00 0.00 1.94
4338 7104 2.283101 TGGCAGTCCATTGGGCAC 60.283 61.111 10.50 0.63 37.47 5.01
4339 7105 2.283101 GGCAGTCCATTGGGCACA 60.283 61.111 10.50 0.00 0.00 4.57
4340 7106 1.907807 GGCAGTCCATTGGGCACAA 60.908 57.895 2.55 2.55 41.59 3.33
4341 7107 1.290009 GCAGTCCATTGGGCACAAC 59.710 57.895 1.86 0.00 39.87 3.32
4342 7108 1.580942 CAGTCCATTGGGCACAACG 59.419 57.895 1.86 0.00 39.87 4.10
4344 7110 3.361158 TCCATTGGGCACAACGCG 61.361 61.111 1.86 3.53 43.84 6.01
4345 7111 4.418401 CCATTGGGCACAACGCGG 62.418 66.667 12.47 0.46 43.84 6.46
4347 7113 3.361977 ATTGGGCACAACGCGGTC 61.362 61.111 12.47 0.00 43.84 4.79
4348 7114 4.858680 TTGGGCACAACGCGGTCA 62.859 61.111 12.47 0.00 43.84 4.02
4366 7132 4.083802 CGGTCACAAAAGAGAGGATTTCAC 60.084 45.833 0.00 0.00 0.00 3.18
4386 7990 7.482654 TTCACTAATAAGCGAAATGAGGATG 57.517 36.000 0.00 0.00 0.00 3.51
4462 8067 1.876156 CCTGTCTTTCTCTTGTGCCAC 59.124 52.381 0.00 0.00 0.00 5.01
4463 8068 1.528586 CTGTCTTTCTCTTGTGCCACG 59.471 52.381 0.00 0.00 0.00 4.94
4514 8120 0.458669 CCATTTCCTGCACCATCAGC 59.541 55.000 0.00 0.00 32.87 4.26
4526 8134 3.683847 GCACCATCAGCCTCTTTATCACT 60.684 47.826 0.00 0.00 0.00 3.41
4624 8232 0.536006 GCCTCAACCTTCACTGCACT 60.536 55.000 0.00 0.00 0.00 4.40
4641 8249 2.216488 GCACTCGCGTGTATGTATTCAG 59.784 50.000 14.12 0.00 43.16 3.02
4645 8253 4.023107 ACTCGCGTGTATGTATTCAGCTAT 60.023 41.667 12.81 0.00 0.00 2.97
4647 8255 3.181540 CGCGTGTATGTATTCAGCTATGC 60.182 47.826 0.00 0.00 0.00 3.14
4651 8259 5.223382 GTGTATGTATTCAGCTATGCGTCT 58.777 41.667 0.00 0.00 0.00 4.18
4652 8260 5.692204 GTGTATGTATTCAGCTATGCGTCTT 59.308 40.000 0.00 0.00 0.00 3.01
4691 8299 5.869344 GCTCCATCAAAATTTAGTTTGGTCC 59.131 40.000 3.23 0.00 38.72 4.46
4692 8300 6.518200 GCTCCATCAAAATTTAGTTTGGTCCA 60.518 38.462 3.23 0.00 38.72 4.02
4693 8301 6.754193 TCCATCAAAATTTAGTTTGGTCCAC 58.246 36.000 0.00 0.00 38.72 4.02
4694 8302 6.553100 TCCATCAAAATTTAGTTTGGTCCACT 59.447 34.615 0.00 0.00 38.72 4.00
4695 8303 6.868339 CCATCAAAATTTAGTTTGGTCCACTC 59.132 38.462 0.00 0.00 38.72 3.51
4696 8304 7.255942 CCATCAAAATTTAGTTTGGTCCACTCT 60.256 37.037 0.00 0.00 38.72 3.24
4697 8305 7.654022 TCAAAATTTAGTTTGGTCCACTCTT 57.346 32.000 0.00 0.00 38.72 2.85
4698 8306 7.488322 TCAAAATTTAGTTTGGTCCACTCTTG 58.512 34.615 0.00 0.00 38.72 3.02
4699 8307 7.123547 TCAAAATTTAGTTTGGTCCACTCTTGT 59.876 33.333 0.00 0.00 38.72 3.16
4700 8308 7.418337 AAATTTAGTTTGGTCCACTCTTGTT 57.582 32.000 0.00 0.00 0.00 2.83
4701 8309 8.528044 AAATTTAGTTTGGTCCACTCTTGTTA 57.472 30.769 0.00 0.00 0.00 2.41
4702 8310 7.745620 ATTTAGTTTGGTCCACTCTTGTTAG 57.254 36.000 0.00 0.00 0.00 2.34
4703 8311 4.772886 AGTTTGGTCCACTCTTGTTAGT 57.227 40.909 0.00 0.00 0.00 2.24
4704 8312 5.112129 AGTTTGGTCCACTCTTGTTAGTT 57.888 39.130 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 574 0.040499 AGGGTGAGGACTGAGAGGTC 59.960 60.000 0.00 0.00 35.66 3.85
51 594 2.362889 CGGCAAATGAAGGGGGCT 60.363 61.111 0.00 0.00 0.00 5.19
52 595 2.679996 ACGGCAAATGAAGGGGGC 60.680 61.111 0.00 0.00 0.00 5.80
68 611 2.962697 GATCTCGCCGCTGGGAAGAC 62.963 65.000 0.00 0.00 31.76 3.01
71 614 2.759973 AGATCTCGCCGCTGGGAA 60.760 61.111 0.00 0.00 34.06 3.97
77 620 2.354539 GCTCTCAGATCTCGCCGC 60.355 66.667 0.00 0.00 0.00 6.53
80 623 1.675483 TCTTGAGCTCTCAGATCTCGC 59.325 52.381 16.19 0.00 41.13 5.03
116 659 0.615331 ATCTCCGCTTGCCTTTGAGA 59.385 50.000 0.00 0.00 36.59 3.27
205 749 1.241165 CTGCACAAGACTTGATGGCA 58.759 50.000 21.95 22.39 35.64 4.92
255 799 9.442047 CCTCACTGACTGATTTAACTCTAATTT 57.558 33.333 0.00 0.00 0.00 1.82
296 840 5.684550 ACGAGAAACCAACAGATAAAACC 57.315 39.130 0.00 0.00 0.00 3.27
372 916 3.125829 ACATTATCTGAGCGCAAACTGTG 59.874 43.478 11.47 0.94 0.00 3.66
385 929 3.866910 GGCATTTGCACCAACATTATCTG 59.133 43.478 4.74 0.00 44.36 2.90
389 933 1.067283 CCGGCATTTGCACCAACATTA 60.067 47.619 4.74 0.00 44.36 1.90
406 950 6.992715 AGAGAATCACAATCCTTATAAACCGG 59.007 38.462 0.00 0.00 37.82 5.28
413 957 7.092444 TGGTACCAAGAGAATCACAATCCTTAT 60.092 37.037 13.60 0.00 37.82 1.73
415 959 5.014123 TGGTACCAAGAGAATCACAATCCTT 59.986 40.000 13.60 0.00 37.82 3.36
419 963 4.253685 CGTGGTACCAAGAGAATCACAAT 58.746 43.478 21.87 0.00 37.82 2.71
437 981 2.981805 CAAATCAAACATGTCAGCGTGG 59.018 45.455 0.00 0.00 35.99 4.94
443 987 3.573538 CCCTGACCAAATCAAACATGTCA 59.426 43.478 0.00 0.00 36.69 3.58
464 1009 6.348050 GCAGCTTACTAGATGTCATAATTGCC 60.348 42.308 0.00 0.00 39.95 4.52
466 1011 7.719778 TGCAGCTTACTAGATGTCATAATTG 57.280 36.000 0.00 0.00 39.95 2.32
470 1015 5.233225 GCATGCAGCTTACTAGATGTCATA 58.767 41.667 14.21 0.00 39.95 2.15
482 1027 2.076207 AATGGATGGCATGCAGCTTA 57.924 45.000 25.65 3.05 44.79 3.09
487 1032 2.447408 AGAGAAATGGATGGCATGCA 57.553 45.000 24.08 24.08 34.26 3.96
519 1064 1.369839 TTGTTTCGTTGCTCCGCACA 61.370 50.000 0.00 0.00 38.71 4.57
556 1102 2.492088 TGGAATCTCACTCGTTCATCGT 59.508 45.455 0.00 0.00 40.80 3.73
608 1155 6.039382 AGTTGGTCAATTATCTATTTTCCGGC 59.961 38.462 0.00 0.00 0.00 6.13
626 1173 8.556213 TGTTAGTTGGTAATATGAAGTTGGTC 57.444 34.615 0.00 0.00 0.00 4.02
638 1185 7.007723 TCCTCACCATTTTGTTAGTTGGTAAT 58.992 34.615 0.00 0.00 40.44 1.89
641 1188 4.798882 TCCTCACCATTTTGTTAGTTGGT 58.201 39.130 0.00 0.00 43.14 3.67
661 1208 4.404715 TGTAGTATAAGGGTGTGAGCTTCC 59.595 45.833 0.00 0.00 0.00 3.46
670 1217 2.691526 TGTCGGCTGTAGTATAAGGGTG 59.308 50.000 0.00 0.00 0.00 4.61
671 1218 3.022557 TGTCGGCTGTAGTATAAGGGT 57.977 47.619 0.00 0.00 0.00 4.34
676 1223 7.640597 ATGCTATAATGTCGGCTGTAGTATA 57.359 36.000 0.00 0.00 0.00 1.47
677 1224 5.977489 TGCTATAATGTCGGCTGTAGTAT 57.023 39.130 0.00 0.00 0.00 2.12
685 1232 6.917477 TCAAAATTGAATGCTATAATGTCGGC 59.083 34.615 0.00 0.00 33.55 5.54
714 1261 7.820386 TGGTAAAATGCTTAAGTTATCGTCTCA 59.180 33.333 4.02 0.00 0.00 3.27
754 1304 8.661352 TGATGTGAAATGTGTATTCATCGTAT 57.339 30.769 0.00 0.00 38.89 3.06
755 1305 8.485976 TTGATGTGAAATGTGTATTCATCGTA 57.514 30.769 0.00 0.00 38.89 3.43
756 1306 6.983474 TGATGTGAAATGTGTATTCATCGT 57.017 33.333 0.00 0.00 38.89 3.73
757 1307 7.964559 AGTTTGATGTGAAATGTGTATTCATCG 59.035 33.333 0.00 0.00 38.89 3.84
819 1369 7.255801 GCCTGCAAGTAGAAATAGATACTCTCT 60.256 40.741 0.00 0.00 38.06 3.10
820 1370 6.866248 GCCTGCAAGTAGAAATAGATACTCTC 59.134 42.308 0.00 0.00 31.03 3.20
821 1371 6.325028 TGCCTGCAAGTAGAAATAGATACTCT 59.675 38.462 0.00 0.00 31.03 3.24
822 1372 6.516718 TGCCTGCAAGTAGAAATAGATACTC 58.483 40.000 0.00 0.00 31.03 2.59
823 1373 6.485830 TGCCTGCAAGTAGAAATAGATACT 57.514 37.500 0.00 0.00 33.67 2.12
824 1374 7.736447 ATTGCCTGCAAGTAGAAATAGATAC 57.264 36.000 10.64 0.00 39.47 2.24
871 1624 1.497309 AATTGGCCGGTCCCTCTTCA 61.497 55.000 2.12 0.00 0.00 3.02
872 1625 1.032114 CAATTGGCCGGTCCCTCTTC 61.032 60.000 2.12 0.00 0.00 2.87
1090 1843 4.659172 CCGCCTGCCTTTGGGTGA 62.659 66.667 0.00 0.00 35.33 4.02
1092 1845 4.351054 CTCCGCCTGCCTTTGGGT 62.351 66.667 0.00 0.00 34.45 4.51
1094 1847 2.117156 CATCTCCGCCTGCCTTTGG 61.117 63.158 0.00 0.00 0.00 3.28
1251 2004 5.070685 ACTGAAACTAAATTCACCCTCACC 58.929 41.667 0.00 0.00 35.55 4.02
1278 2031 2.940410 TGGAAACGAGAAACCAACAGAC 59.060 45.455 0.00 0.00 0.00 3.51
1302 2055 1.227943 CGCACCCCCACTATCCATG 60.228 63.158 0.00 0.00 0.00 3.66
1335 2089 5.644644 CCCAAACTGTCTAATGCTGAAATC 58.355 41.667 0.00 0.00 0.00 2.17
1357 2113 1.337167 GCCACCAACATTTTCTGAGCC 60.337 52.381 0.00 0.00 0.00 4.70
1362 2118 2.483538 GCACAAGCCACCAACATTTTCT 60.484 45.455 0.00 0.00 33.58 2.52
1391 2147 6.721318 AGGGAGTAGTTGCATCAAAATTAGA 58.279 36.000 0.00 0.00 0.00 2.10
1418 2174 1.060122 CCGCGACAAGTAAATCGGAAC 59.940 52.381 8.23 0.00 39.23 3.62
1419 2175 1.337074 ACCGCGACAAGTAAATCGGAA 60.337 47.619 8.23 0.00 40.04 4.30
1420 2176 0.244450 ACCGCGACAAGTAAATCGGA 59.756 50.000 8.23 0.00 40.04 4.55
1421 2177 1.073177 AACCGCGACAAGTAAATCGG 58.927 50.000 8.23 0.00 42.24 4.18
1422 2178 2.867456 AAACCGCGACAAGTAAATCG 57.133 45.000 8.23 0.00 41.32 3.34
1423 2179 5.273523 ACTAAAACCGCGACAAGTAAATC 57.726 39.130 8.23 0.00 0.00 2.17
1424 2180 5.236911 TGAACTAAAACCGCGACAAGTAAAT 59.763 36.000 8.23 0.00 0.00 1.40
1425 2181 4.569966 TGAACTAAAACCGCGACAAGTAAA 59.430 37.500 8.23 0.00 0.00 2.01
1426 2182 4.118410 TGAACTAAAACCGCGACAAGTAA 58.882 39.130 8.23 0.00 0.00 2.24
1427 2183 3.715495 TGAACTAAAACCGCGACAAGTA 58.285 40.909 8.23 0.00 0.00 2.24
1428 2184 2.542595 CTGAACTAAAACCGCGACAAGT 59.457 45.455 8.23 0.13 0.00 3.16
1429 2185 2.542595 ACTGAACTAAAACCGCGACAAG 59.457 45.455 8.23 0.00 0.00 3.16
1430 2186 2.553086 ACTGAACTAAAACCGCGACAA 58.447 42.857 8.23 0.00 0.00 3.18
1431 2187 2.228138 ACTGAACTAAAACCGCGACA 57.772 45.000 8.23 0.00 0.00 4.35
1432 2188 3.597377 AAACTGAACTAAAACCGCGAC 57.403 42.857 8.23 0.00 0.00 5.19
1433 2189 4.810491 ACTAAAACTGAACTAAAACCGCGA 59.190 37.500 8.23 0.00 0.00 5.87
1434 2190 5.086888 ACTAAAACTGAACTAAAACCGCG 57.913 39.130 0.00 0.00 0.00 6.46
1435 2191 6.488817 TGAACTAAAACTGAACTAAAACCGC 58.511 36.000 0.00 0.00 0.00 5.68
1436 2192 8.898983 TTTGAACTAAAACTGAACTAAAACCG 57.101 30.769 0.00 0.00 0.00 4.44
1456 2212 8.191446 TCGTCATGGTTTTAGTTCAAATTTGAA 58.809 29.630 26.01 26.01 44.31 2.69
1457 2213 7.708051 TCGTCATGGTTTTAGTTCAAATTTGA 58.292 30.769 16.91 16.91 34.92 2.69
1458 2214 7.647715 ACTCGTCATGGTTTTAGTTCAAATTTG 59.352 33.333 12.15 12.15 0.00 2.32
1459 2215 7.712797 ACTCGTCATGGTTTTAGTTCAAATTT 58.287 30.769 0.00 0.00 0.00 1.82
1460 2216 7.272037 ACTCGTCATGGTTTTAGTTCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
1461 2217 6.877611 ACTCGTCATGGTTTTAGTTCAAAT 57.122 33.333 0.00 0.00 0.00 2.32
1462 2218 7.789273 TTACTCGTCATGGTTTTAGTTCAAA 57.211 32.000 0.00 0.00 0.00 2.69
1463 2219 7.789273 TTTACTCGTCATGGTTTTAGTTCAA 57.211 32.000 0.00 0.00 0.00 2.69
1464 2220 7.148705 CGATTTACTCGTCATGGTTTTAGTTCA 60.149 37.037 0.00 0.00 42.56 3.18
1465 2221 7.171434 CGATTTACTCGTCATGGTTTTAGTTC 58.829 38.462 0.00 0.00 42.56 3.01
1466 2222 6.091713 CCGATTTACTCGTCATGGTTTTAGTT 59.908 38.462 0.00 0.00 46.18 2.24
1467 2223 5.579511 CCGATTTACTCGTCATGGTTTTAGT 59.420 40.000 0.00 0.00 46.18 2.24
1468 2224 5.808540 TCCGATTTACTCGTCATGGTTTTAG 59.191 40.000 0.00 0.00 46.18 1.85
1469 2225 5.722263 TCCGATTTACTCGTCATGGTTTTA 58.278 37.500 0.00 0.00 46.18 1.52
1470 2226 4.571919 TCCGATTTACTCGTCATGGTTTT 58.428 39.130 0.00 0.00 46.18 2.43
1471 2227 4.196626 TCCGATTTACTCGTCATGGTTT 57.803 40.909 0.00 0.00 46.18 3.27
1472 2228 3.880047 TCCGATTTACTCGTCATGGTT 57.120 42.857 0.00 0.00 46.18 3.67
1473 2229 3.518590 GTTCCGATTTACTCGTCATGGT 58.481 45.455 0.00 0.00 46.18 3.55
1474 2230 2.534349 CGTTCCGATTTACTCGTCATGG 59.466 50.000 0.00 0.00 46.18 3.66
1475 2231 2.534349 CCGTTCCGATTTACTCGTCATG 59.466 50.000 0.00 0.00 46.18 3.07
1476 2232 2.424601 TCCGTTCCGATTTACTCGTCAT 59.575 45.455 0.00 0.00 46.18 3.06
1477 2233 1.811965 TCCGTTCCGATTTACTCGTCA 59.188 47.619 0.00 0.00 46.18 4.35
1478 2234 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
1479 2235 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
1481 2237 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
1482 2238 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
1483 2239 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
1484 2240 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
1485 2241 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
1486 2242 2.083628 ATACTCCCTCCGTTCCGATT 57.916 50.000 0.00 0.00 0.00 3.34
1487 2243 2.083628 AATACTCCCTCCGTTCCGAT 57.916 50.000 0.00 0.00 0.00 4.18
1488 2244 1.479323 CAAATACTCCCTCCGTTCCGA 59.521 52.381 0.00 0.00 0.00 4.55
1489 2245 1.472728 CCAAATACTCCCTCCGTTCCG 60.473 57.143 0.00 0.00 0.00 4.30
1490 2246 1.558294 ACCAAATACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
1491 2247 4.161001 TCTTACCAAATACTCCCTCCGTTC 59.839 45.833 0.00 0.00 0.00 3.95
1492 2248 4.098894 TCTTACCAAATACTCCCTCCGTT 58.901 43.478 0.00 0.00 0.00 4.44
1493 2249 3.716431 TCTTACCAAATACTCCCTCCGT 58.284 45.455 0.00 0.00 0.00 4.69
1494 2250 4.748277 TTCTTACCAAATACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
1495 2251 9.121658 CTTAATTTCTTACCAAATACTCCCTCC 57.878 37.037 0.00 0.00 0.00 4.30
1496 2252 9.901172 TCTTAATTTCTTACCAAATACTCCCTC 57.099 33.333 0.00 0.00 0.00 4.30
1497 2253 9.907229 CTCTTAATTTCTTACCAAATACTCCCT 57.093 33.333 0.00 0.00 0.00 4.20
1498 2254 9.682465 ACTCTTAATTTCTTACCAAATACTCCC 57.318 33.333 0.00 0.00 0.00 4.30
1532 2289 6.975772 GCAGAGTAACTGGTCTCATTAGTAAG 59.024 42.308 0.00 0.00 45.82 2.34
1597 2354 3.577649 TCGACTCTTTAGCAGTGAAGG 57.422 47.619 0.00 0.00 0.00 3.46
1599 2356 4.220821 AGGATTCGACTCTTTAGCAGTGAA 59.779 41.667 2.56 0.00 0.00 3.18
1604 2361 4.705507 ACTACAGGATTCGACTCTTTAGCA 59.294 41.667 2.56 0.00 0.00 3.49
1616 2373 5.346181 AGTTGGCTTCTACTACAGGATTC 57.654 43.478 0.00 0.00 0.00 2.52
1629 2386 5.818136 TTATCATGTAGCAAGTTGGCTTC 57.182 39.130 4.75 1.57 42.71 3.86
1670 2427 9.460906 GGAAGTAGAAAACAATACTATACGGAG 57.539 37.037 0.00 0.00 32.01 4.63
1672 2429 9.460906 GAGGAAGTAGAAAACAATACTATACGG 57.539 37.037 0.00 0.00 32.01 4.02
1673 2430 9.460906 GGAGGAAGTAGAAAACAATACTATACG 57.539 37.037 0.00 0.00 32.01 3.06
1674 2431 9.460906 CGGAGGAAGTAGAAAACAATACTATAC 57.539 37.037 0.00 0.00 32.01 1.47
1679 2443 5.579904 GGACGGAGGAAGTAGAAAACAATAC 59.420 44.000 0.00 0.00 0.00 1.89
1724 2544 7.649057 CACTGAAATACGTCTAGATACATCCA 58.351 38.462 0.00 0.00 0.00 3.41
1748 2568 2.068519 CGCAAACAGATGTGTCTAGCA 58.931 47.619 12.48 0.00 35.08 3.49
1749 2569 1.201965 GCGCAAACAGATGTGTCTAGC 60.202 52.381 0.30 0.14 35.08 3.42
1751 2571 2.162319 TGCGCAAACAGATGTGTCTA 57.838 45.000 8.16 0.00 35.08 2.59
1752 2572 1.466167 GATGCGCAAACAGATGTGTCT 59.534 47.619 17.11 0.00 35.08 3.41
1754 2574 1.237533 TGATGCGCAAACAGATGTGT 58.762 45.000 17.11 0.00 39.19 3.72
1755 2575 1.980844 GTTGATGCGCAAACAGATGTG 59.019 47.619 17.11 0.00 38.44 3.21
1756 2576 1.881973 AGTTGATGCGCAAACAGATGT 59.118 42.857 23.02 1.51 38.44 3.06
1757 2577 2.624316 AGTTGATGCGCAAACAGATG 57.376 45.000 23.02 0.00 38.44 2.90
1767 2587 4.129380 TCCATCTGGAATTAGTTGATGCG 58.871 43.478 0.00 0.00 42.18 4.73
1783 2603 6.069963 AGCACAACTAATTACTTCCTCCATCT 60.070 38.462 0.00 0.00 0.00 2.90
1809 2794 6.398234 ACAGACTCTATTGCCAGTAGTATG 57.602 41.667 0.00 0.00 35.93 2.39
1824 2809 7.335422 CCATCAAACTAAATGCTAACAGACTCT 59.665 37.037 0.00 0.00 0.00 3.24
2013 2998 5.428253 TGCTTCCTCATGTACCAAACTATC 58.572 41.667 0.00 0.00 0.00 2.08
2197 3189 4.163078 TGGGCAATTCAGAAAGGTCAAAAA 59.837 37.500 0.00 0.00 0.00 1.94
2220 3212 8.469200 CCATCATACAATGGTTTCAACAACTAT 58.531 33.333 0.00 0.00 41.18 2.12
2222 3214 6.690530 CCATCATACAATGGTTTCAACAACT 58.309 36.000 0.00 0.00 41.18 3.16
2223 3215 6.949578 CCATCATACAATGGTTTCAACAAC 57.050 37.500 0.00 0.00 41.18 3.32
2246 3241 1.904287 TAAGGCAACACCCATCACAC 58.096 50.000 0.00 0.00 40.58 3.82
2289 3293 1.388547 AATTATCACAACGCGGGCAT 58.611 45.000 12.47 0.75 0.00 4.40
2294 3298 1.910819 GGTGCAAATTATCACAACGCG 59.089 47.619 3.53 3.53 35.04 6.01
2409 3413 1.238439 ATTGGCCAGTCAAGTTGTCG 58.762 50.000 5.11 0.00 0.00 4.35
2439 3443 0.978907 GGAGGAGACGTTACCCCAAA 59.021 55.000 8.07 0.00 0.00 3.28
2478 3482 7.966246 TCTTTCAATGCAAAAGCAACATAAT 57.034 28.000 4.75 0.00 34.43 1.28
2479 3483 7.783090 TTCTTTCAATGCAAAAGCAACATAA 57.217 28.000 4.75 0.00 34.43 1.90
2481 3485 6.680874 TTTCTTTCAATGCAAAAGCAACAT 57.319 29.167 4.75 0.00 34.43 2.71
2482 3486 6.680874 ATTTCTTTCAATGCAAAAGCAACA 57.319 29.167 4.75 0.00 34.43 3.33
2483 3487 9.161684 CTTTATTTCTTTCAATGCAAAAGCAAC 57.838 29.630 4.75 0.00 34.43 4.17
2484 3488 7.856894 GCTTTATTTCTTTCAATGCAAAAGCAA 59.143 29.630 15.51 7.72 43.44 3.91
2485 3489 7.227116 AGCTTTATTTCTTTCAATGCAAAAGCA 59.773 29.630 20.11 2.99 45.31 3.91
2486 3490 7.578852 AGCTTTATTTCTTTCAATGCAAAAGC 58.421 30.769 13.49 13.49 43.99 3.51
2487 3491 8.767085 TGAGCTTTATTTCTTTCAATGCAAAAG 58.233 29.630 3.40 3.40 35.49 2.27
2488 3492 8.659925 TGAGCTTTATTTCTTTCAATGCAAAA 57.340 26.923 0.00 0.00 0.00 2.44
2489 3493 7.385752 CCTGAGCTTTATTTCTTTCAATGCAAA 59.614 33.333 0.00 0.00 0.00 3.68
2490 3494 6.869913 CCTGAGCTTTATTTCTTTCAATGCAA 59.130 34.615 0.00 0.00 0.00 4.08
2491 3495 6.209192 TCCTGAGCTTTATTTCTTTCAATGCA 59.791 34.615 0.00 0.00 0.00 3.96
2492 3496 6.529477 GTCCTGAGCTTTATTTCTTTCAATGC 59.471 38.462 0.00 0.00 0.00 3.56
2493 3497 7.824672 AGTCCTGAGCTTTATTTCTTTCAATG 58.175 34.615 0.00 0.00 0.00 2.82
2494 3498 9.692325 ATAGTCCTGAGCTTTATTTCTTTCAAT 57.308 29.630 0.00 0.00 0.00 2.57
2496 3500 9.601217 GTATAGTCCTGAGCTTTATTTCTTTCA 57.399 33.333 0.00 0.00 0.00 2.69
2497 3501 9.825109 AGTATAGTCCTGAGCTTTATTTCTTTC 57.175 33.333 0.00 0.00 0.00 2.62
2500 3504 9.606631 CAAAGTATAGTCCTGAGCTTTATTTCT 57.393 33.333 0.00 0.00 0.00 2.52
2501 3505 9.384764 ACAAAGTATAGTCCTGAGCTTTATTTC 57.615 33.333 0.00 0.00 0.00 2.17
2512 3516 9.557338 GCTATTATCGTACAAAGTATAGTCCTG 57.443 37.037 0.00 0.00 0.00 3.86
2519 3523 5.047519 AGGCCGCTATTATCGTACAAAGTAT 60.048 40.000 0.00 0.00 0.00 2.12
2529 3533 7.145985 ACATTATGTATAGGCCGCTATTATCG 58.854 38.462 0.00 0.00 0.00 2.92
2553 3559 9.191995 CAAACAAAAGGGTAGATTGACAATTAC 57.808 33.333 1.39 6.97 0.00 1.89
2559 3565 6.144078 ACACAAACAAAAGGGTAGATTGAC 57.856 37.500 0.00 0.00 0.00 3.18
2602 3616 9.775854 ACCAGAATATGACAATAGAAGATTCAG 57.224 33.333 0.00 0.00 0.00 3.02
2608 3622 8.722480 TGAACACCAGAATATGACAATAGAAG 57.278 34.615 0.00 0.00 0.00 2.85
2629 3643 3.829601 AGGTCCCGAGATGATATCTGAAC 59.170 47.826 3.98 0.00 40.38 3.18
2635 3649 5.368989 GAAAACAAGGTCCCGAGATGATAT 58.631 41.667 0.00 0.00 0.00 1.63
2665 3679 8.566260 ACGTAGTAGCATCATACCTAAAACTAG 58.434 37.037 0.00 0.00 41.94 2.57
2827 3847 3.933332 CCTGTAATCTTGAGAAACGGGAC 59.067 47.826 14.87 0.00 40.33 4.46
2843 3863 4.343814 TGAGTAATGATCGCATCCCTGTAA 59.656 41.667 0.00 0.00 32.35 2.41
3036 4056 9.659135 TTATCCATTGGATTAATCTGTTTGGAT 57.341 29.630 26.85 26.85 39.79 3.41
3480 4510 9.814899 CATATGATCCATATCTTTCCTGTCTAC 57.185 37.037 0.00 0.00 35.18 2.59
3645 4681 1.599047 GAGGGAGTAAGCAGCAGCA 59.401 57.895 3.17 0.00 45.49 4.41
3647 4683 1.142748 CGGAGGGAGTAAGCAGCAG 59.857 63.158 0.00 0.00 0.00 4.24
3655 4691 2.898920 ATTCGCGGACGGAGGGAGTA 62.899 60.000 6.13 0.00 40.63 2.59
3656 4692 2.898920 TATTCGCGGACGGAGGGAGT 62.899 60.000 6.13 0.00 40.63 3.85
3657 4693 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
3658 4694 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
3659 4695 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
3660 4696 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
3665 4701 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
3667 4703 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
3668 4704 4.537965 AGCTAGATGTACACTTATTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
3670 4706 8.186178 ACAAAAGCTAGATGTACACTTATTCG 57.814 34.615 0.00 0.00 0.00 3.34
3676 4712 9.338622 ACTTAAAACAAAAGCTAGATGTACACT 57.661 29.630 0.00 0.13 0.00 3.55
3677 4713 9.595357 GACTTAAAACAAAAGCTAGATGTACAC 57.405 33.333 0.00 0.00 0.00 2.90
3678 4714 9.332502 TGACTTAAAACAAAAGCTAGATGTACA 57.667 29.630 0.00 0.00 0.00 2.90
3681 4717 8.352942 CCTTGACTTAAAACAAAAGCTAGATGT 58.647 33.333 0.00 0.00 0.00 3.06
3682 4718 8.352942 ACCTTGACTTAAAACAAAAGCTAGATG 58.647 33.333 0.00 0.00 0.00 2.90
3683 4719 8.465273 ACCTTGACTTAAAACAAAAGCTAGAT 57.535 30.769 0.00 0.00 0.00 1.98
3684 4720 7.875327 ACCTTGACTTAAAACAAAAGCTAGA 57.125 32.000 0.00 0.00 0.00 2.43
3685 4721 8.926715 AAACCTTGACTTAAAACAAAAGCTAG 57.073 30.769 0.00 0.00 0.00 3.42
3687 4723 9.713713 TTAAAACCTTGACTTAAAACAAAAGCT 57.286 25.926 0.00 0.00 0.00 3.74
3698 4734 9.629878 TGGTCAAAGTATTAAAACCTTGACTTA 57.370 29.630 14.64 5.64 44.64 2.24
3699 4735 8.410912 GTGGTCAAAGTATTAAAACCTTGACTT 58.589 33.333 14.64 0.00 44.64 3.01
3700 4736 7.013942 GGTGGTCAAAGTATTAAAACCTTGACT 59.986 37.037 14.64 0.00 44.64 3.41
3701 4737 7.013942 AGGTGGTCAAAGTATTAAAACCTTGAC 59.986 37.037 9.08 9.08 44.57 3.18
3702 4738 7.064229 AGGTGGTCAAAGTATTAAAACCTTGA 58.936 34.615 0.00 0.00 31.53 3.02
3703 4739 7.284919 AGGTGGTCAAAGTATTAAAACCTTG 57.715 36.000 0.00 0.00 31.53 3.61
3704 4740 7.907841 AAGGTGGTCAAAGTATTAAAACCTT 57.092 32.000 0.00 0.00 39.93 3.50
3705 4741 7.907841 AAAGGTGGTCAAAGTATTAAAACCT 57.092 32.000 0.00 0.00 37.10 3.50
3712 4748 9.462606 CTTTCCTATAAAGGTGGTCAAAGTATT 57.537 33.333 0.00 0.00 44.09 1.89
3713 4749 8.832735 TCTTTCCTATAAAGGTGGTCAAAGTAT 58.167 33.333 0.00 0.00 44.09 2.12
3714 4750 8.209802 TCTTTCCTATAAAGGTGGTCAAAGTA 57.790 34.615 0.00 0.00 44.09 2.24
3715 4751 7.086685 TCTTTCCTATAAAGGTGGTCAAAGT 57.913 36.000 0.00 0.00 44.09 2.66
3716 4752 7.168905 ACTCTTTCCTATAAAGGTGGTCAAAG 58.831 38.462 0.00 0.00 44.09 2.77
3717 4753 7.086685 ACTCTTTCCTATAAAGGTGGTCAAA 57.913 36.000 0.00 0.00 44.09 2.69
3718 4754 6.697641 ACTCTTTCCTATAAAGGTGGTCAA 57.302 37.500 0.00 0.00 44.09 3.18
3719 4755 7.801893 TTACTCTTTCCTATAAAGGTGGTCA 57.198 36.000 0.00 0.00 44.09 4.02
3720 4756 9.163899 CTTTTACTCTTTCCTATAAAGGTGGTC 57.836 37.037 0.00 0.00 44.09 4.02
3721 4757 7.610692 GCTTTTACTCTTTCCTATAAAGGTGGT 59.389 37.037 0.00 0.00 44.09 4.16
3722 4758 7.829706 AGCTTTTACTCTTTCCTATAAAGGTGG 59.170 37.037 0.00 0.00 44.09 4.61
3723 4759 8.794335 AGCTTTTACTCTTTCCTATAAAGGTG 57.206 34.615 0.00 0.00 44.09 4.00
3724 4760 9.809395 AAAGCTTTTACTCTTTCCTATAAAGGT 57.191 29.630 5.69 0.00 44.09 3.50
3730 4766 8.687242 GCCATAAAAGCTTTTACTCTTTCCTAT 58.313 33.333 29.11 11.33 35.65 2.57
3731 4767 7.668052 TGCCATAAAAGCTTTTACTCTTTCCTA 59.332 33.333 29.11 9.58 35.65 2.94
3732 4768 6.493458 TGCCATAAAAGCTTTTACTCTTTCCT 59.507 34.615 29.11 11.73 35.65 3.36
3733 4769 6.586463 GTGCCATAAAAGCTTTTACTCTTTCC 59.414 38.462 29.11 15.44 35.65 3.13
3734 4770 6.586463 GGTGCCATAAAAGCTTTTACTCTTTC 59.414 38.462 29.11 18.30 35.65 2.62
3735 4771 6.041523 TGGTGCCATAAAAGCTTTTACTCTTT 59.958 34.615 29.11 13.70 35.65 2.52
3736 4772 5.538433 TGGTGCCATAAAAGCTTTTACTCTT 59.462 36.000 29.11 14.04 35.65 2.85
3737 4773 5.076873 TGGTGCCATAAAAGCTTTTACTCT 58.923 37.500 29.11 14.37 35.65 3.24
3738 4774 5.385509 TGGTGCCATAAAAGCTTTTACTC 57.614 39.130 29.11 20.94 35.65 2.59
3739 4775 5.799827 TTGGTGCCATAAAAGCTTTTACT 57.200 34.783 29.11 17.33 35.65 2.24
3740 4776 7.433708 AATTTGGTGCCATAAAAGCTTTTAC 57.566 32.000 29.11 20.01 35.65 2.01
3741 4777 7.333174 GCTAATTTGGTGCCATAAAAGCTTTTA 59.667 33.333 28.78 28.78 37.08 1.52
3742 4778 6.149308 GCTAATTTGGTGCCATAAAAGCTTTT 59.851 34.615 26.50 26.50 0.00 2.27
3743 4779 5.643348 GCTAATTTGGTGCCATAAAAGCTTT 59.357 36.000 5.69 5.69 0.00 3.51
3744 4780 5.178061 GCTAATTTGGTGCCATAAAAGCTT 58.822 37.500 0.00 0.00 0.00 3.74
3745 4781 4.222588 TGCTAATTTGGTGCCATAAAAGCT 59.777 37.500 14.53 0.00 0.00 3.74
3746 4782 4.502962 TGCTAATTTGGTGCCATAAAAGC 58.497 39.130 9.80 9.80 0.00 3.51
3747 4783 6.256321 GTGATGCTAATTTGGTGCCATAAAAG 59.744 38.462 0.00 0.00 0.00 2.27
3748 4784 6.070881 AGTGATGCTAATTTGGTGCCATAAAA 60.071 34.615 0.00 0.00 0.00 1.52
3749 4785 5.421693 AGTGATGCTAATTTGGTGCCATAAA 59.578 36.000 0.00 0.00 0.00 1.40
3750 4786 4.955450 AGTGATGCTAATTTGGTGCCATAA 59.045 37.500 0.00 0.00 0.00 1.90
3751 4787 4.338964 CAGTGATGCTAATTTGGTGCCATA 59.661 41.667 0.00 0.00 0.00 2.74
3752 4788 3.131577 CAGTGATGCTAATTTGGTGCCAT 59.868 43.478 0.00 0.00 0.00 4.40
3753 4789 2.492881 CAGTGATGCTAATTTGGTGCCA 59.507 45.455 0.00 0.00 0.00 4.92
3754 4790 2.754552 TCAGTGATGCTAATTTGGTGCC 59.245 45.455 0.00 0.00 0.00 5.01
3755 4791 4.644103 ATCAGTGATGCTAATTTGGTGC 57.356 40.909 4.39 0.00 0.00 5.01
3756 4792 6.392354 ACAAATCAGTGATGCTAATTTGGTG 58.608 36.000 6.34 0.00 40.13 4.17
3757 4793 6.594788 ACAAATCAGTGATGCTAATTTGGT 57.405 33.333 6.34 0.00 40.13 3.67
3758 4794 7.894376 AAACAAATCAGTGATGCTAATTTGG 57.106 32.000 6.34 0.00 40.13 3.28
3759 4795 8.980610 TCAAAACAAATCAGTGATGCTAATTTG 58.019 29.630 6.34 13.74 41.08 2.32
3760 4796 9.545105 TTCAAAACAAATCAGTGATGCTAATTT 57.455 25.926 6.34 2.83 0.00 1.82
3761 4797 9.545105 TTTCAAAACAAATCAGTGATGCTAATT 57.455 25.926 6.34 0.00 0.00 1.40
3762 4798 9.715121 ATTTCAAAACAAATCAGTGATGCTAAT 57.285 25.926 6.34 0.00 0.00 1.73
3763 4799 8.980610 CATTTCAAAACAAATCAGTGATGCTAA 58.019 29.630 6.34 0.00 0.00 3.09
3764 4800 8.143193 ACATTTCAAAACAAATCAGTGATGCTA 58.857 29.630 6.34 0.00 0.00 3.49
3765 4801 6.987992 ACATTTCAAAACAAATCAGTGATGCT 59.012 30.769 6.34 0.00 0.00 3.79
3766 4802 7.181143 ACATTTCAAAACAAATCAGTGATGC 57.819 32.000 6.34 0.00 0.00 3.91
3767 4803 9.467258 AGTACATTTCAAAACAAATCAGTGATG 57.533 29.630 6.34 0.00 0.00 3.07
3769 4805 9.868277 AAAGTACATTTCAAAACAAATCAGTGA 57.132 25.926 0.00 0.00 0.00 3.41
3856 4892 9.581099 CCTTTGCTCTAAGTCAAAGTTTTAAAA 57.419 29.630 12.03 0.00 44.51 1.52
3857 4893 7.704899 GCCTTTGCTCTAAGTCAAAGTTTTAAA 59.295 33.333 12.03 0.00 44.51 1.52
3858 4894 7.200455 GCCTTTGCTCTAAGTCAAAGTTTTAA 58.800 34.615 12.03 0.00 44.51 1.52
3859 4895 6.735130 GCCTTTGCTCTAAGTCAAAGTTTTA 58.265 36.000 12.03 0.00 44.51 1.52
3860 4896 5.592054 GCCTTTGCTCTAAGTCAAAGTTTT 58.408 37.500 12.03 0.00 44.51 2.43
3861 4897 5.188327 GCCTTTGCTCTAAGTCAAAGTTT 57.812 39.130 12.03 0.00 44.51 2.66
3862 4898 4.837896 GCCTTTGCTCTAAGTCAAAGTT 57.162 40.909 12.03 0.00 44.51 2.66
3876 4912 6.292381 CGAATAAGTGTACATCTAGCCTTTGC 60.292 42.308 0.00 0.00 37.95 3.68
3877 4913 6.292381 GCGAATAAGTGTACATCTAGCCTTTG 60.292 42.308 0.00 0.00 0.00 2.77
3878 4914 5.753921 GCGAATAAGTGTACATCTAGCCTTT 59.246 40.000 0.00 0.00 0.00 3.11
3879 4915 5.290386 GCGAATAAGTGTACATCTAGCCTT 58.710 41.667 0.00 0.00 0.00 4.35
3880 4916 4.556898 CGCGAATAAGTGTACATCTAGCCT 60.557 45.833 0.00 0.00 0.00 4.58
3881 4917 3.669122 CGCGAATAAGTGTACATCTAGCC 59.331 47.826 0.00 0.00 0.00 3.93
3882 4918 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
3883 4919 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
3884 4920 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
3885 4921 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
3886 4922 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
3887 4923 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
3888 4924 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
3889 4925 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
3890 4926 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
3891 4927 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
3892 4928 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
3893 4929 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
3894 4930 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
3895 4931 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
3896 4932 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
3897 4933 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
3898 4934 2.898920 ATACTCCCTCCGTCCGCGAA 62.899 60.000 8.23 0.00 41.33 4.70
3899 4935 2.043604 TATACTCCCTCCGTCCGCGA 62.044 60.000 8.23 0.00 41.33 5.87
3900 4936 0.959372 ATATACTCCCTCCGTCCGCG 60.959 60.000 0.00 0.00 37.95 6.46
3901 4937 0.526662 CATATACTCCCTCCGTCCGC 59.473 60.000 0.00 0.00 0.00 5.54
3902 4938 1.174783 CCATATACTCCCTCCGTCCG 58.825 60.000 0.00 0.00 0.00 4.79
3903 4939 2.299297 CAACCATATACTCCCTCCGTCC 59.701 54.545 0.00 0.00 0.00 4.79
3904 4940 2.963782 ACAACCATATACTCCCTCCGTC 59.036 50.000 0.00 0.00 0.00 4.79
3905 4941 3.042059 ACAACCATATACTCCCTCCGT 57.958 47.619 0.00 0.00 0.00 4.69
3906 4942 5.740290 AATACAACCATATACTCCCTCCG 57.260 43.478 0.00 0.00 0.00 4.63
3907 4943 7.074653 TGAAATACAACCATATACTCCCTCC 57.925 40.000 0.00 0.00 0.00 4.30
3913 4949 9.204570 GCGAGTTATGAAATACAACCATATACT 57.795 33.333 0.00 0.00 0.00 2.12
3914 4950 8.984764 TGCGAGTTATGAAATACAACCATATAC 58.015 33.333 0.00 0.00 0.00 1.47
3994 5348 7.309177 TCGACTTCTCTCATTTAACTCTTCAG 58.691 38.462 0.00 0.00 0.00 3.02
3995 5349 7.215719 TCGACTTCTCTCATTTAACTCTTCA 57.784 36.000 0.00 0.00 0.00 3.02
3996 5350 7.434013 GGATCGACTTCTCTCATTTAACTCTTC 59.566 40.741 0.00 0.00 0.00 2.87
3997 5351 7.093727 TGGATCGACTTCTCTCATTTAACTCTT 60.094 37.037 0.00 0.00 0.00 2.85
3998 5352 6.378564 TGGATCGACTTCTCTCATTTAACTCT 59.621 38.462 0.00 0.00 0.00 3.24
3999 5353 6.565234 TGGATCGACTTCTCTCATTTAACTC 58.435 40.000 0.00 0.00 0.00 3.01
4045 5399 7.702348 AGTTCAAGATTGTGTTTTAGACTTTGC 59.298 33.333 0.00 0.00 0.00 3.68
4107 5461 3.141398 TCAAACAGTTTCAGCTAGCCTG 58.859 45.455 12.13 13.40 43.17 4.85
4130 5484 4.345859 ACAACGTACAGGGATCTCAAAA 57.654 40.909 0.00 0.00 0.00 2.44
4141 5495 2.096909 GTGTAGCTGCAACAACGTACAG 60.097 50.000 5.91 0.00 0.00 2.74
4147 5501 1.164041 ACCCGTGTAGCTGCAACAAC 61.164 55.000 5.91 0.00 0.00 3.32
4225 5583 7.067496 TCCTCTCTTTTACACTCTGAATTGT 57.933 36.000 0.00 0.00 0.00 2.71
4226 5584 8.558973 AATCCTCTCTTTTACACTCTGAATTG 57.441 34.615 0.00 0.00 0.00 2.32
4262 7028 8.255905 AGTTAAGGTACATATTTTGCGTACTCT 58.744 33.333 0.00 0.00 36.56 3.24
4280 7046 6.444171 ACCTCTGCCTTCTATAAAGTTAAGGT 59.556 38.462 0.00 0.00 40.55 3.50
4281 7047 6.890293 ACCTCTGCCTTCTATAAAGTTAAGG 58.110 40.000 0.00 0.00 41.23 2.69
4282 7048 8.794335 AAACCTCTGCCTTCTATAAAGTTAAG 57.206 34.615 0.00 0.00 0.00 1.85
4283 7049 9.886132 CTAAACCTCTGCCTTCTATAAAGTTAA 57.114 33.333 0.00 0.00 0.00 2.01
4284 7050 8.483758 CCTAAACCTCTGCCTTCTATAAAGTTA 58.516 37.037 0.00 0.00 0.00 2.24
4285 7051 7.037514 ACCTAAACCTCTGCCTTCTATAAAGTT 60.038 37.037 0.00 0.00 0.00 2.66
4286 7052 6.444171 ACCTAAACCTCTGCCTTCTATAAAGT 59.556 38.462 0.00 0.00 0.00 2.66
4287 7053 6.890293 ACCTAAACCTCTGCCTTCTATAAAG 58.110 40.000 0.00 0.00 0.00 1.85
4291 7057 6.886178 TTTACCTAAACCTCTGCCTTCTAT 57.114 37.500 0.00 0.00 0.00 1.98
4292 7058 6.691255 TTTTACCTAAACCTCTGCCTTCTA 57.309 37.500 0.00 0.00 0.00 2.10
4322 7088 1.907807 TTGTGCCCAATGGACTGCC 60.908 57.895 0.00 0.00 0.00 4.85
4323 7089 1.290009 GTTGTGCCCAATGGACTGC 59.710 57.895 0.00 0.00 32.11 4.40
4324 7090 1.580942 CGTTGTGCCCAATGGACTG 59.419 57.895 0.00 0.00 34.54 3.51
4325 7091 2.268076 GCGTTGTGCCCAATGGACT 61.268 57.895 0.00 0.00 37.92 3.85
4326 7092 2.258286 GCGTTGTGCCCAATGGAC 59.742 61.111 0.00 0.00 37.92 4.02
4328 7094 4.418401 CCGCGTTGTGCCCAATGG 62.418 66.667 4.92 0.00 42.08 3.16
4331 7097 4.858680 TGACCGCGTTGTGCCCAA 62.859 61.111 4.92 0.00 42.08 4.12
4334 7100 2.600122 TTTTGTGACCGCGTTGTGCC 62.600 55.000 4.92 0.00 42.08 5.01
4335 7101 1.199852 CTTTTGTGACCGCGTTGTGC 61.200 55.000 4.92 0.00 41.47 4.57
4337 7103 0.655733 CTCTTTTGTGACCGCGTTGT 59.344 50.000 4.92 0.00 0.00 3.32
4338 7104 0.934496 TCTCTTTTGTGACCGCGTTG 59.066 50.000 4.92 0.00 0.00 4.10
4339 7105 1.217882 CTCTCTTTTGTGACCGCGTT 58.782 50.000 4.92 0.00 0.00 4.84
4340 7106 0.600255 CCTCTCTTTTGTGACCGCGT 60.600 55.000 4.92 0.00 0.00 6.01
4341 7107 0.319555 TCCTCTCTTTTGTGACCGCG 60.320 55.000 0.00 0.00 0.00 6.46
4342 7108 2.100605 ATCCTCTCTTTTGTGACCGC 57.899 50.000 0.00 0.00 0.00 5.68
4344 7110 5.066593 AGTGAAATCCTCTCTTTTGTGACC 58.933 41.667 0.00 0.00 0.00 4.02
4345 7111 7.730364 TTAGTGAAATCCTCTCTTTTGTGAC 57.270 36.000 0.00 0.00 0.00 3.67
4348 7114 8.951243 GCTTATTAGTGAAATCCTCTCTTTTGT 58.049 33.333 0.00 0.00 0.00 2.83
4349 7115 8.119226 CGCTTATTAGTGAAATCCTCTCTTTTG 58.881 37.037 0.00 0.00 33.62 2.44
4366 7132 7.148507 GGATGTCATCCTCATTTCGCTTATTAG 60.149 40.741 22.64 0.00 46.19 1.73
4401 8005 1.895707 CCTGCCATCGGAATGCTCC 60.896 63.158 4.15 0.00 38.52 4.70
4462 8067 1.431488 CTCGGATTGTGGATGTGCCG 61.431 60.000 0.00 0.00 40.66 5.69
4463 8068 1.718757 GCTCGGATTGTGGATGTGCC 61.719 60.000 0.00 0.00 37.10 5.01
4514 8120 9.276590 TCATACAATGCATAAGTGATAAAGAGG 57.723 33.333 13.34 0.00 0.00 3.69
4526 8134 9.353431 ACCACTATTGAATCATACAATGCATAA 57.647 29.630 0.00 0.00 38.25 1.90
4548 8156 1.747355 CAGGATTCAGATGCCAACCAC 59.253 52.381 0.00 0.00 0.00 4.16
4624 8232 2.863401 AGCTGAATACATACACGCGA 57.137 45.000 15.93 0.00 0.00 5.87
4647 8255 2.784380 GCTATTGCTCTCGTACAAGACG 59.216 50.000 0.00 0.00 43.87 4.18
4663 8271 8.815912 ACCAAACTAAATTTTGATGGAGCTATT 58.184 29.630 23.88 8.14 38.54 1.73
4677 8285 7.778382 ACTAACAAGAGTGGACCAAACTAAATT 59.222 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.