Multiple sequence alignment - TraesCS4A01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G340600 chr4A 100.000 5557 0 0 1 5557 621660023 621665579 0.000000e+00 10262
1 TraesCS4A01G340600 chr4A 90.610 213 20 0 227 439 674746766 674746978 3.280000e-72 283
2 TraesCS4A01G340600 chr4A 76.575 508 77 19 2842 3317 622172270 622171773 2.000000e-59 241
3 TraesCS4A01G340600 chr5D 89.950 2796 164 56 2143 4875 547276008 547273267 0.000000e+00 3498
4 TraesCS4A01G340600 chr5D 92.054 1120 65 19 787 1887 547277456 547276342 0.000000e+00 1554
5 TraesCS4A01G340600 chr5D 91.582 392 24 6 5173 5557 189169167 189169556 2.950000e-147 532
6 TraesCS4A01G340600 chr5D 89.433 388 35 5 5171 5557 63104718 63105100 8.370000e-133 484
7 TraesCS4A01G340600 chr5D 93.077 260 17 1 1886 2144 547276312 547276053 4.060000e-101 379
8 TraesCS4A01G340600 chr5D 92.553 188 8 2 440 627 547277708 547277527 1.190000e-66 265
9 TraesCS4A01G340600 chr5D 93.210 162 7 1 4880 5041 547273081 547272924 9.310000e-58 235
10 TraesCS4A01G340600 chr5D 100.000 61 0 0 625 685 398867229 398867289 4.550000e-21 113
11 TraesCS4A01G340600 chr5B 93.660 2161 91 12 1886 4029 690706147 690704016 0.000000e+00 3190
12 TraesCS4A01G340600 chr5B 90.976 1219 67 23 692 1887 690707375 690706177 0.000000e+00 1602
13 TraesCS4A01G340600 chr5B 86.936 1064 52 21 4145 5140 690703986 690702942 0.000000e+00 1114
14 TraesCS4A01G340600 chr5B 85.647 425 44 12 5138 5551 677811825 677811407 1.110000e-116 431
15 TraesCS4A01G340600 chr5B 92.946 241 11 1 202 436 546498797 546498557 4.120000e-91 346
16 TraesCS4A01G340600 chr5B 99.408 169 1 0 1 169 546499324 546499156 1.940000e-79 307
17 TraesCS4A01G340600 chr5B 88.889 171 17 2 1 169 493093265 493093095 5.640000e-50 209
18 TraesCS4A01G340600 chr5B 86.923 130 15 2 687 814 375380139 375380010 1.610000e-30 145
19 TraesCS4A01G340600 chr7A 86.111 900 98 17 996 1884 298768526 298769409 0.000000e+00 944
20 TraesCS4A01G340600 chr7A 88.684 433 18 13 1889 2321 298769446 298769847 2.990000e-137 499
21 TraesCS4A01G340600 chr7A 86.179 123 12 5 694 814 725443073 725442954 1.620000e-25 128
22 TraesCS4A01G340600 chr7A 100.000 61 0 0 625 685 15109350 15109410 4.550000e-21 113
23 TraesCS4A01G340600 chr7D 91.304 391 33 1 5167 5557 436879654 436880043 2.950000e-147 532
24 TraesCS4A01G340600 chr7D 100.000 60 0 0 624 683 29137460 29137401 1.640000e-20 111
25 TraesCS4A01G340600 chr6A 90.933 386 33 1 5172 5557 548045293 548045676 8.250000e-143 518
26 TraesCS4A01G340600 chr6A 90.104 384 36 1 5176 5557 360610527 360610910 1.080000e-136 497
27 TraesCS4A01G340600 chr6A 90.244 205 16 4 236 439 100234664 100234463 1.190000e-66 265
28 TraesCS4A01G340600 chr3A 91.916 334 25 1 5224 5557 111087676 111088007 3.030000e-127 466
29 TraesCS4A01G340600 chr6D 87.940 398 37 8 5171 5557 47079701 47079304 5.070000e-125 459
30 TraesCS4A01G340600 chr6D 84.615 130 12 6 694 815 97928422 97928293 7.560000e-24 122
31 TraesCS4A01G340600 chr6D 83.846 130 19 2 687 814 383743561 383743432 7.560000e-24 122
32 TraesCS4A01G340600 chr6D 84.733 131 10 6 694 814 388209764 388209894 7.560000e-24 122
33 TraesCS4A01G340600 chr1A 96.970 264 8 0 176 439 399489360 399489623 1.420000e-120 444
34 TraesCS4A01G340600 chr1A 98.817 169 2 0 1 169 399488816 399488984 9.050000e-78 302
35 TraesCS4A01G340600 chr1A 85.165 182 24 3 229 409 567984565 567984744 3.420000e-42 183
36 TraesCS4A01G340600 chr1A 86.400 125 11 5 694 812 388749796 388749920 1.260000e-26 132
37 TraesCS4A01G340600 chr3D 86.432 398 42 7 5171 5557 517006150 517006546 5.150000e-115 425
38 TraesCS4A01G340600 chr4B 93.333 270 11 2 176 439 37089960 37090228 5.220000e-105 392
39 TraesCS4A01G340600 chr4B 93.750 176 3 2 1 169 37089390 37089564 1.990000e-64 257
40 TraesCS4A01G340600 chr4B 83.582 134 15 5 687 814 27243658 27243790 9.780000e-23 119
41 TraesCS4A01G340600 chr6B 89.151 212 21 2 227 438 471154187 471153978 4.270000e-66 263
42 TraesCS4A01G340600 chr4D 88.068 176 17 1 264 439 102115713 102115884 7.300000e-49 206
43 TraesCS4A01G340600 chr7B 81.395 215 33 7 227 439 673570565 673570774 9.570000e-38 169
44 TraesCS4A01G340600 chr7B 83.704 135 10 8 693 815 5054494 5054360 3.520000e-22 117
45 TraesCS4A01G340600 chr2D 100.000 64 0 0 625 688 647736376 647736313 9.780000e-23 119
46 TraesCS4A01G340600 chr1B 83.212 137 14 5 687 814 577610458 577610322 3.520000e-22 117
47 TraesCS4A01G340600 chrUn 100.000 61 0 0 625 685 332138325 332138265 4.550000e-21 113
48 TraesCS4A01G340600 chr2B 100.000 61 0 0 625 685 6881240 6881180 4.550000e-21 113
49 TraesCS4A01G340600 chr2B 100.000 61 0 0 625 685 6883272 6883212 4.550000e-21 113
50 TraesCS4A01G340600 chr2B 100.000 61 0 0 625 685 6963682 6963622 4.550000e-21 113
51 TraesCS4A01G340600 chr5A 98.413 63 1 0 623 685 447321388 447321450 1.640000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G340600 chr4A 621660023 621665579 5556 False 10262.000000 10262 100.0000 1 5557 1 chr4A.!!$F1 5556
1 TraesCS4A01G340600 chr5D 547272924 547277708 4784 True 1186.200000 3498 92.1688 440 5041 5 chr5D.!!$R1 4601
2 TraesCS4A01G340600 chr5B 690702942 690707375 4433 True 1968.666667 3190 90.5240 692 5140 3 chr5B.!!$R5 4448
3 TraesCS4A01G340600 chr5B 546498557 546499324 767 True 326.500000 346 96.1770 1 436 2 chr5B.!!$R4 435
4 TraesCS4A01G340600 chr7A 298768526 298769847 1321 False 721.500000 944 87.3975 996 2321 2 chr7A.!!$F2 1325
5 TraesCS4A01G340600 chr1A 399488816 399489623 807 False 373.000000 444 97.8935 1 439 2 chr1A.!!$F3 438
6 TraesCS4A01G340600 chr4B 37089390 37090228 838 False 324.500000 392 93.5415 1 439 2 chr4B.!!$F2 438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 1056 0.179029 ATAAGGGTGTGGCCGTATGC 60.179 55.000 0.00 0.00 38.44 3.14 F
1315 1759 0.321122 CTCGCCTCAGCTGTTTCCTT 60.321 55.000 14.67 0.00 36.60 3.36 F
1321 1765 1.288127 CAGCTGTTTCCTTGCTGCC 59.712 57.895 5.25 0.00 45.76 4.85 F
1440 1893 1.478510 AGGACACTATTGAGACTGCCG 59.521 52.381 0.00 0.00 0.00 5.69 F
1889 2380 1.699054 ATCCTTCCGGCATGCTAGCA 61.699 55.000 21.85 21.85 35.83 3.49 F
3174 3718 2.030540 CGTTCGTTTAGGAGTGGACTCA 60.031 50.000 8.99 0.00 44.60 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 2096 0.394565 GGCGGGCAGATTGAGTAGAT 59.605 55.000 0.00 0.0 0.00 1.98 R
2225 2763 0.738389 AGGCACAACCAAAACTGTCG 59.262 50.000 0.00 0.0 43.14 4.35 R
3221 3765 1.035923 GGAGATGATGCGGTCTCAGA 58.964 55.000 4.95 0.0 42.04 3.27 R
3378 3924 7.726216 CATGTATACCATGGTTCTAGTCAAGA 58.274 38.462 25.38 0.0 46.03 3.02 R
3674 4222 0.110486 GAAAGCCAACCTGTCTCCCA 59.890 55.000 0.00 0.0 0.00 4.37 R
5009 5838 0.033642 TGTTTGATGGGCGTCGTACA 59.966 50.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.625818 AGGATGCCTCAAAGTTCGTCT 59.374 47.619 0.00 0.00 0.00 4.18
170 178 2.511600 GGAACCCAGACATCCGCG 60.512 66.667 0.00 0.00 0.00 6.46
171 179 2.511600 GAACCCAGACATCCGCGG 60.512 66.667 22.12 22.12 0.00 6.46
172 180 4.096003 AACCCAGACATCCGCGGG 62.096 66.667 27.83 13.23 44.88 6.13
185 594 2.597510 GCGGGCCAAACCAGAGTT 60.598 61.111 4.39 0.00 42.05 3.01
378 799 1.872952 TCTTTTGCACACATCACCTCG 59.127 47.619 0.00 0.00 0.00 4.63
450 871 1.890979 CGCTCTCCCCATGCATGTC 60.891 63.158 24.58 4.59 0.00 3.06
452 873 1.524002 CTCTCCCCATGCATGTCGT 59.476 57.895 24.58 0.00 0.00 4.34
454 875 0.977627 TCTCCCCATGCATGTCGTCT 60.978 55.000 24.58 0.00 0.00 4.18
480 901 1.662517 TTGAACACATCACACACGCT 58.337 45.000 0.00 0.00 37.92 5.07
502 923 5.824624 GCTTTGAATTATGATCAGGGAGACA 59.175 40.000 0.09 0.00 0.00 3.41
516 937 4.027437 AGGGAGACAGAGAACAATCCTAC 58.973 47.826 0.00 0.00 0.00 3.18
562 983 9.429109 TTTATTTTCAAGGGGACTAAACTCTTT 57.571 29.630 0.00 0.00 42.68 2.52
563 984 6.709018 TTTTCAAGGGGACTAAACTCTTTG 57.291 37.500 0.00 0.00 42.68 2.77
564 985 3.751518 TCAAGGGGACTAAACTCTTTGC 58.248 45.455 0.00 0.00 42.68 3.68
565 986 3.137544 TCAAGGGGACTAAACTCTTTGCA 59.862 43.478 0.00 0.00 42.68 4.08
566 987 3.141767 AGGGGACTAAACTCTTTGCAC 57.858 47.619 0.00 0.00 40.61 4.57
582 1003 1.086696 GCACTTGTATGATGCCACGT 58.913 50.000 0.00 0.00 33.06 4.49
589 1010 2.161410 TGTATGATGCCACGTTTTCAGC 59.839 45.455 0.00 0.00 0.00 4.26
628 1049 9.830975 ATTTTATCAAAATAATAAGGGTGTGGC 57.169 29.630 0.00 0.00 39.21 5.01
629 1050 5.869649 ATCAAAATAATAAGGGTGTGGCC 57.130 39.130 0.00 0.00 0.00 5.36
630 1051 3.697045 TCAAAATAATAAGGGTGTGGCCG 59.303 43.478 0.00 0.00 38.44 6.13
631 1052 3.375647 AAATAATAAGGGTGTGGCCGT 57.624 42.857 0.00 0.00 38.44 5.68
632 1053 4.506937 AAATAATAAGGGTGTGGCCGTA 57.493 40.909 0.00 0.00 38.44 4.02
633 1054 4.717279 AATAATAAGGGTGTGGCCGTAT 57.283 40.909 0.00 0.00 38.44 3.06
634 1055 2.341846 AATAAGGGTGTGGCCGTATG 57.658 50.000 0.00 0.00 38.44 2.39
635 1056 0.179029 ATAAGGGTGTGGCCGTATGC 60.179 55.000 0.00 0.00 38.44 3.14
636 1057 1.554583 TAAGGGTGTGGCCGTATGCA 61.555 55.000 0.00 0.00 43.89 3.96
637 1058 2.124320 GGGTGTGGCCGTATGCAT 60.124 61.111 3.79 3.79 43.89 3.96
638 1059 2.186826 GGGTGTGGCCGTATGCATC 61.187 63.158 0.19 0.00 43.89 3.91
639 1060 2.534019 GGTGTGGCCGTATGCATCG 61.534 63.158 0.19 7.03 43.89 3.84
640 1061 2.894879 TGTGGCCGTATGCATCGC 60.895 61.111 0.19 3.34 43.89 4.58
641 1062 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
642 1063 4.927782 TGGCCGTATGCATCGCCC 62.928 66.667 22.75 16.75 43.89 6.13
643 1064 4.927782 GGCCGTATGCATCGCCCA 62.928 66.667 17.54 0.00 43.89 5.36
644 1065 3.349006 GCCGTATGCATCGCCCAG 61.349 66.667 0.19 0.00 40.77 4.45
645 1066 2.421314 CCGTATGCATCGCCCAGA 59.579 61.111 0.19 0.00 0.00 3.86
646 1067 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90
653 1074 4.247781 ATCGCCCAGATGCAAAGG 57.752 55.556 0.00 0.00 38.36 3.11
654 1075 2.123428 ATCGCCCAGATGCAAAGGC 61.123 57.895 9.03 9.03 42.18 4.35
655 1076 3.830192 CGCCCAGATGCAAAGGCC 61.830 66.667 12.39 0.00 42.66 5.19
656 1077 3.830192 GCCCAGATGCAAAGGCCG 61.830 66.667 0.00 0.00 39.60 6.13
657 1078 3.142838 CCCAGATGCAAAGGCCGG 61.143 66.667 0.00 0.00 40.13 6.13
658 1079 3.142838 CCAGATGCAAAGGCCGGG 61.143 66.667 2.18 0.00 40.13 5.73
659 1080 3.142838 CAGATGCAAAGGCCGGGG 61.143 66.667 2.18 0.00 40.13 5.73
660 1081 4.447342 AGATGCAAAGGCCGGGGG 62.447 66.667 2.18 0.00 40.13 5.40
661 1082 4.759205 GATGCAAAGGCCGGGGGT 62.759 66.667 2.18 0.00 40.13 4.95
662 1083 4.759205 ATGCAAAGGCCGGGGGTC 62.759 66.667 2.18 0.00 40.13 4.46
664 1085 4.759205 GCAAAGGCCGGGGGTCAT 62.759 66.667 2.18 0.00 0.00 3.06
665 1086 2.440247 CAAAGGCCGGGGGTCATC 60.440 66.667 2.18 0.00 0.00 2.92
666 1087 3.739613 AAAGGCCGGGGGTCATCC 61.740 66.667 2.18 0.00 0.00 3.51
667 1088 4.760220 AAGGCCGGGGGTCATCCT 62.760 66.667 2.18 0.00 35.33 3.24
678 1099 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
679 1100 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
680 1101 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
722 1143 7.009179 TGAGATTTAACCAAGTCTCAGTCAT 57.991 36.000 8.09 0.00 46.61 3.06
744 1165 8.935844 GTCATGTGACATAACATACAAAGAAGA 58.064 33.333 8.22 0.00 44.18 2.87
809 1230 7.087007 TCTCACGAATATAGCATCAATGAGAC 58.913 38.462 0.00 0.00 34.79 3.36
860 1283 5.665916 AATCAGTAAAGAAAATGCAGGGG 57.334 39.130 0.00 0.00 0.00 4.79
872 1295 1.139498 TGCAGGGGAGGATTTGGACA 61.139 55.000 0.00 0.00 0.00 4.02
1039 1468 2.281761 CTCACCACCACCACCAGC 60.282 66.667 0.00 0.00 0.00 4.85
1312 1756 2.394563 GCCTCGCCTCAGCTGTTTC 61.395 63.158 14.67 2.80 36.60 2.78
1315 1759 0.321122 CTCGCCTCAGCTGTTTCCTT 60.321 55.000 14.67 0.00 36.60 3.36
1320 1764 4.959446 CAGCTGTTTCCTTGCTGC 57.041 55.556 5.25 0.00 45.76 5.25
1321 1765 1.288127 CAGCTGTTTCCTTGCTGCC 59.712 57.895 5.25 0.00 45.76 4.85
1412 1865 3.570212 GCCGGCTGGGGGTATCAT 61.570 66.667 22.15 0.00 35.78 2.45
1420 1873 2.158623 GCTGGGGGTATCATTCATCACA 60.159 50.000 0.00 0.00 0.00 3.58
1421 1874 3.748083 CTGGGGGTATCATTCATCACAG 58.252 50.000 0.00 0.00 0.00 3.66
1422 1875 2.442878 TGGGGGTATCATTCATCACAGG 59.557 50.000 0.00 0.00 0.00 4.00
1423 1876 2.711009 GGGGGTATCATTCATCACAGGA 59.289 50.000 0.00 0.00 0.00 3.86
1424 1877 3.496870 GGGGGTATCATTCATCACAGGAC 60.497 52.174 0.00 0.00 0.00 3.85
1425 1878 3.136443 GGGGTATCATTCATCACAGGACA 59.864 47.826 0.00 0.00 0.00 4.02
1426 1879 4.130118 GGGTATCATTCATCACAGGACAC 58.870 47.826 0.00 0.00 0.00 3.67
1427 1880 4.141620 GGGTATCATTCATCACAGGACACT 60.142 45.833 0.00 0.00 0.00 3.55
1428 1881 5.070446 GGGTATCATTCATCACAGGACACTA 59.930 44.000 0.00 0.00 0.00 2.74
1429 1882 6.239714 GGGTATCATTCATCACAGGACACTAT 60.240 42.308 0.00 0.00 0.00 2.12
1440 1893 1.478510 AGGACACTATTGAGACTGCCG 59.521 52.381 0.00 0.00 0.00 5.69
1491 1944 3.345808 GTGCGCGCAGACAAGGAA 61.346 61.111 37.44 5.80 0.00 3.36
1515 1968 1.880340 GAAGATCCTCACGCTGCCG 60.880 63.158 0.00 0.00 41.14 5.69
1551 2004 2.272146 GGCGGGCTCATCCTGAAA 59.728 61.111 0.00 0.00 44.37 2.69
1642 2096 4.074799 TCCTCCTCCTTCCAGTTGATTA 57.925 45.455 0.00 0.00 0.00 1.75
1657 2111 6.426328 CCAGTTGATTATCTACTCAATCTGCC 59.574 42.308 6.35 0.00 34.18 4.85
1726 2181 3.057548 TGGATTGCGGCTGCTGTG 61.058 61.111 20.27 0.00 43.34 3.66
1743 2199 5.565509 TGCTGTGACTTAATTTATGGTCCA 58.434 37.500 0.00 0.00 0.00 4.02
1889 2380 1.699054 ATCCTTCCGGCATGCTAGCA 61.699 55.000 21.85 21.85 35.83 3.49
1924 2415 7.783042 ACTAATTAAGTGGATGGTAGACTCAC 58.217 38.462 0.00 0.00 36.93 3.51
2019 2511 9.726438 ATATGCTCCATAAAGTTGACCTTATAC 57.274 33.333 0.00 0.00 31.48 1.47
2032 2524 4.464951 TGACCTTATACCGTGACATGAACT 59.535 41.667 0.00 0.00 0.00 3.01
2067 2559 4.877282 TGGTTTTACTTACTGCATTTGGC 58.123 39.130 0.00 0.00 45.13 4.52
2214 2752 6.947644 TTCCCATGATCAGACACATATTTG 57.052 37.500 0.09 0.00 0.00 2.32
2225 2763 7.101054 TCAGACACATATTTGGTAGTTACACC 58.899 38.462 0.00 0.00 39.20 4.16
2854 3395 3.698029 ATGATCTTAATGCCGTGCAAC 57.302 42.857 2.68 0.00 43.62 4.17
2862 3403 3.354089 AATGCCGTGCAACTATAATGC 57.646 42.857 2.68 3.74 43.62 3.56
2877 3418 5.885912 ACTATAATGCACAGTGTTTTAGGGG 59.114 40.000 1.61 0.00 0.00 4.79
2928 3469 3.134442 TCAGGCATGCTTTCCTTTTGTTT 59.866 39.130 18.92 0.00 0.00 2.83
2937 3478 6.930731 TGCTTTCCTTTTGTTTCTTACAAGT 58.069 32.000 0.00 0.00 46.81 3.16
3038 3579 4.141158 ACAAACAGGGAGAAGTCAAGGATT 60.141 41.667 0.00 0.00 0.00 3.01
3107 3648 7.877612 ACATTGGACAAAATTATTCCTTTGGTC 59.122 33.333 0.00 0.00 36.31 4.02
3125 3666 3.181455 TGGTCAGTTGCTGAATACACAGT 60.181 43.478 0.00 0.00 42.46 3.55
3145 3689 6.366332 CACAGTGTCTCAGGATGTTTTACTAC 59.634 42.308 0.00 0.00 37.40 2.73
3154 3698 6.866770 TCAGGATGTTTTACTACTCAACTTCG 59.133 38.462 0.00 0.00 37.40 3.79
3174 3718 2.030540 CGTTCGTTTAGGAGTGGACTCA 60.031 50.000 8.99 0.00 44.60 3.41
3208 3752 3.404899 TCATGTTTTGTAGGAACCCGAC 58.595 45.455 0.00 0.00 0.00 4.79
3221 3765 2.176247 ACCCGACCTATCACCTGATT 57.824 50.000 0.00 0.00 36.05 2.57
3321 3865 3.810941 GACGGGTATGTGTTCTGTTTGAA 59.189 43.478 0.00 0.00 0.00 2.69
3378 3924 6.038714 CACTTTAAGAGCAGTGTCCTTTTCTT 59.961 38.462 0.00 0.00 36.44 2.52
3387 3933 5.178438 GCAGTGTCCTTTTCTTCTTGACTAG 59.822 44.000 0.00 0.00 0.00 2.57
3429 3977 2.672961 TAGGTTCTGCCGTGATCTTG 57.327 50.000 0.00 0.00 43.70 3.02
3565 4113 6.636705 TGTATCGTCCTAAAGCACACTAATT 58.363 36.000 0.00 0.00 0.00 1.40
3589 4137 3.394674 TTACTCATCGAAGTTGCCACA 57.605 42.857 0.00 0.00 0.00 4.17
3910 4463 1.085091 CACTGCCATCTGTTGAGAGC 58.915 55.000 0.00 0.00 0.00 4.09
3927 4480 4.198625 CGAGCAGCAGAAGGGAAG 57.801 61.111 0.00 0.00 0.00 3.46
3928 4481 1.449246 CGAGCAGCAGAAGGGAAGG 60.449 63.158 0.00 0.00 0.00 3.46
3929 4482 1.077858 GAGCAGCAGAAGGGAAGGG 60.078 63.158 0.00 0.00 0.00 3.95
4038 4604 7.651808 ACCTGTTTATACATTGCTTGATATGC 58.348 34.615 0.00 0.00 32.86 3.14
4048 4614 1.929038 GCTTGATATGCCTGCAATGCG 60.929 52.381 0.00 0.00 0.00 4.73
4069 4635 0.536260 AAGCTGCCAAAACAAGTGCA 59.464 45.000 0.00 0.00 0.00 4.57
4070 4636 0.179103 AGCTGCCAAAACAAGTGCAC 60.179 50.000 9.40 9.40 0.00 4.57
4071 4637 1.153597 GCTGCCAAAACAAGTGCACC 61.154 55.000 14.63 0.00 0.00 5.01
4072 4638 0.461135 CTGCCAAAACAAGTGCACCT 59.539 50.000 14.63 0.00 0.00 4.00
4073 4639 0.459489 TGCCAAAACAAGTGCACCTC 59.541 50.000 14.63 0.00 0.00 3.85
4074 4640 0.459489 GCCAAAACAAGTGCACCTCA 59.541 50.000 14.63 0.00 0.00 3.86
4082 4648 3.106407 GTGCACCTCACGACGAGC 61.106 66.667 5.22 0.00 40.78 5.03
4083 4649 4.357947 TGCACCTCACGACGAGCC 62.358 66.667 0.00 0.00 40.78 4.70
4084 4650 4.357947 GCACCTCACGACGAGCCA 62.358 66.667 0.00 0.00 40.78 4.75
4085 4651 2.573869 CACCTCACGACGAGCCAT 59.426 61.111 0.00 0.00 40.78 4.40
4086 4652 1.807226 CACCTCACGACGAGCCATA 59.193 57.895 0.00 0.00 40.78 2.74
4087 4653 0.385751 CACCTCACGACGAGCCATAT 59.614 55.000 0.00 0.00 40.78 1.78
4088 4654 1.607148 CACCTCACGACGAGCCATATA 59.393 52.381 0.00 0.00 40.78 0.86
4089 4655 2.229062 CACCTCACGACGAGCCATATAT 59.771 50.000 0.00 0.00 40.78 0.86
4090 4656 2.488545 ACCTCACGACGAGCCATATATC 59.511 50.000 0.00 0.00 40.78 1.63
4091 4657 2.488153 CCTCACGACGAGCCATATATCA 59.512 50.000 0.00 0.00 40.78 2.15
4092 4658 3.493272 CTCACGACGAGCCATATATCAC 58.507 50.000 0.00 0.00 34.18 3.06
4093 4659 3.146847 TCACGACGAGCCATATATCACT 58.853 45.455 0.00 0.00 0.00 3.41
4094 4660 3.058224 TCACGACGAGCCATATATCACTG 60.058 47.826 0.00 0.00 0.00 3.66
4095 4661 2.254459 CGACGAGCCATATATCACTGC 58.746 52.381 0.00 0.00 0.00 4.40
4096 4662 2.611518 GACGAGCCATATATCACTGCC 58.388 52.381 0.00 0.00 0.00 4.85
4097 4663 1.970640 ACGAGCCATATATCACTGCCA 59.029 47.619 0.00 0.00 0.00 4.92
4098 4664 2.368548 ACGAGCCATATATCACTGCCAA 59.631 45.455 0.00 0.00 0.00 4.52
4099 4665 3.181455 ACGAGCCATATATCACTGCCAAA 60.181 43.478 0.00 0.00 0.00 3.28
4100 4666 3.814842 CGAGCCATATATCACTGCCAAAA 59.185 43.478 0.00 0.00 0.00 2.44
4101 4667 4.319766 CGAGCCATATATCACTGCCAAAAC 60.320 45.833 0.00 0.00 0.00 2.43
4102 4668 3.891366 AGCCATATATCACTGCCAAAACC 59.109 43.478 0.00 0.00 0.00 3.27
4103 4669 3.005791 GCCATATATCACTGCCAAAACCC 59.994 47.826 0.00 0.00 0.00 4.11
4104 4670 4.473444 CCATATATCACTGCCAAAACCCT 58.527 43.478 0.00 0.00 0.00 4.34
4105 4671 4.279169 CCATATATCACTGCCAAAACCCTG 59.721 45.833 0.00 0.00 0.00 4.45
4106 4672 2.214376 TATCACTGCCAAAACCCTGG 57.786 50.000 0.00 0.00 39.71 4.45
4107 4673 0.482446 ATCACTGCCAAAACCCTGGA 59.518 50.000 0.00 0.00 38.96 3.86
4108 4674 0.178992 TCACTGCCAAAACCCTGGAG 60.179 55.000 0.00 0.00 38.96 3.86
4109 4675 0.468029 CACTGCCAAAACCCTGGAGT 60.468 55.000 0.00 0.00 38.96 3.85
4160 4739 3.003275 ACACGCATAAACACCTTGTCTTG 59.997 43.478 0.00 0.00 0.00 3.02
4185 4768 4.083003 CGCTTTCAAACTGTAGGCCAAATA 60.083 41.667 5.01 0.00 0.00 1.40
4198 4781 9.107177 CTGTAGGCCAAATATTCATAGATGATC 57.893 37.037 5.01 0.00 36.56 2.92
4202 4785 9.240734 AGGCCAAATATTCATAGATGATCTTTC 57.759 33.333 5.01 0.00 36.56 2.62
4310 4895 4.070552 GGACGCGTTCCCTGAGCT 62.071 66.667 15.53 0.00 38.70 4.09
4312 4897 1.668151 GACGCGTTCCCTGAGCTTT 60.668 57.895 15.53 0.00 0.00 3.51
4386 4989 3.391049 ACTGAAGCCTAAACGACAGTTC 58.609 45.455 0.00 0.00 40.18 3.01
4424 5028 1.635487 TGAAACTCCATTCCTCCCAGG 59.365 52.381 0.00 0.00 36.46 4.45
4509 5121 1.202818 GCTGAACCAACTGAACCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
4563 5181 1.081094 ACGTACGTTTGCTAATGGCC 58.919 50.000 16.72 0.00 40.92 5.36
4564 5182 0.375803 CGTACGTTTGCTAATGGCCC 59.624 55.000 7.22 0.00 40.92 5.80
4594 5212 2.219325 CTGTGTCTCCCTCTCGTGGC 62.219 65.000 0.00 0.00 0.00 5.01
4602 5220 1.513158 CCTCTCGTGGCTTCGATGT 59.487 57.895 5.93 0.00 39.12 3.06
4603 5221 0.108615 CCTCTCGTGGCTTCGATGTT 60.109 55.000 5.93 0.00 39.12 2.71
4618 5236 4.801891 TCGATGTTGTTGTGTAGGACTAC 58.198 43.478 2.57 2.57 36.63 2.73
4623 5241 5.786311 TGTTGTTGTGTAGGACTACCATAC 58.214 41.667 7.00 0.24 38.94 2.39
4655 5273 2.514205 ATGGCTCACTTTGTGTTTGC 57.486 45.000 0.00 2.19 34.79 3.68
4692 5321 2.473760 CGTTTGGTTGGTCGCCACA 61.474 57.895 0.00 0.00 35.46 4.17
4700 5329 2.031919 GGTCGCCACACCATGACA 59.968 61.111 0.00 0.00 36.32 3.58
4704 5333 0.391528 TCGCCACACCATGACATGAG 60.392 55.000 17.24 11.05 0.00 2.90
4718 5347 5.268118 TGACATGAGTCTCGATAAGCAAT 57.732 39.130 0.00 0.00 45.20 3.56
4719 5348 5.045872 TGACATGAGTCTCGATAAGCAATG 58.954 41.667 0.00 0.00 45.20 2.82
4720 5349 3.806521 ACATGAGTCTCGATAAGCAATGC 59.193 43.478 0.00 0.00 0.00 3.56
4721 5350 3.525268 TGAGTCTCGATAAGCAATGCA 57.475 42.857 8.35 0.00 0.00 3.96
4746 5394 2.102925 CAGTCAAATTGGGTGGCAAGTT 59.897 45.455 0.00 0.00 0.00 2.66
4751 5399 2.307496 ATTGGGTGGCAAGTTCATCA 57.693 45.000 0.00 0.00 0.00 3.07
4762 5410 5.721000 TGGCAAGTTCATCATTTATTTCCCT 59.279 36.000 0.00 0.00 0.00 4.20
4813 5461 3.705051 ACAATCAATCTGGGTCAGCAAT 58.295 40.909 0.00 0.00 0.00 3.56
4875 5523 7.895975 AATTAGTTTACGGAGTTTGGAGTAC 57.104 36.000 0.00 0.00 37.78 2.73
4890 5719 6.592798 TTGGAGTACCGATTAATTAAAGCG 57.407 37.500 13.70 13.70 46.34 4.68
4992 5821 2.683867 GGGACGATCGATACCATCTAGG 59.316 54.545 24.34 0.00 45.67 3.02
5009 5838 0.383231 AGGTTCGTTCAGTCGACGTT 59.617 50.000 10.46 0.00 41.08 3.99
5093 5937 5.777850 AATTTAAAAGGGCAACACTACGT 57.222 34.783 0.00 0.00 39.74 3.57
5133 5977 4.340381 GCCTTGTGAGCTATTGGATTCAAT 59.660 41.667 4.25 4.25 44.87 2.57
5134 5978 5.532406 GCCTTGTGAGCTATTGGATTCAATA 59.468 40.000 6.28 6.28 42.90 1.90
5140 5984 9.716531 TGTGAGCTATTGGATTCAATATAAGAG 57.283 33.333 6.90 0.00 42.80 2.85
5141 5985 8.663911 GTGAGCTATTGGATTCAATATAAGAGC 58.336 37.037 6.90 8.40 42.80 4.09
5142 5986 8.377799 TGAGCTATTGGATTCAATATAAGAGCA 58.622 33.333 17.04 4.49 42.80 4.26
5143 5987 9.393512 GAGCTATTGGATTCAATATAAGAGCAT 57.606 33.333 17.04 5.93 42.80 3.79
5144 5988 9.393512 AGCTATTGGATTCAATATAAGAGCATC 57.606 33.333 17.04 0.00 42.80 3.91
5145 5989 9.393512 GCTATTGGATTCAATATAAGAGCATCT 57.606 33.333 11.89 0.00 45.07 2.90
5147 5991 8.804912 ATTGGATTCAATATAAGAGCATCTCC 57.195 34.615 0.00 0.00 42.96 3.71
5148 5992 8.388589 ATTGGATTCAATATAAGAGCATCTCCA 58.611 33.333 0.00 0.00 42.96 3.86
5156 6000 2.777969 GAGCATCTCCAACAGCCAG 58.222 57.895 0.00 0.00 0.00 4.85
5157 6001 1.375098 GAGCATCTCCAACAGCCAGC 61.375 60.000 0.00 0.00 0.00 4.85
5158 6002 2.413142 GCATCTCCAACAGCCAGCC 61.413 63.158 0.00 0.00 0.00 4.85
5159 6003 1.001764 CATCTCCAACAGCCAGCCA 60.002 57.895 0.00 0.00 0.00 4.75
5160 6004 1.001641 ATCTCCAACAGCCAGCCAC 60.002 57.895 0.00 0.00 0.00 5.01
5161 6005 2.809861 ATCTCCAACAGCCAGCCACG 62.810 60.000 0.00 0.00 0.00 4.94
5165 6009 4.892965 AACAGCCAGCCACGCCAA 62.893 61.111 0.00 0.00 0.00 4.52
5166 6010 4.892965 ACAGCCAGCCACGCCAAA 62.893 61.111 0.00 0.00 0.00 3.28
5167 6011 3.604667 CAGCCAGCCACGCCAAAA 61.605 61.111 0.00 0.00 0.00 2.44
5168 6012 3.297620 AGCCAGCCACGCCAAAAG 61.298 61.111 0.00 0.00 0.00 2.27
5169 6013 3.294493 GCCAGCCACGCCAAAAGA 61.294 61.111 0.00 0.00 0.00 2.52
5170 6014 2.644992 CCAGCCACGCCAAAAGAC 59.355 61.111 0.00 0.00 0.00 3.01
5171 6015 2.252260 CAGCCACGCCAAAAGACG 59.748 61.111 0.00 0.00 0.00 4.18
5172 6016 3.660111 AGCCACGCCAAAAGACGC 61.660 61.111 0.00 0.00 0.00 5.19
5194 6038 3.799755 GGGACATTTTCGCGCGCT 61.800 61.111 30.48 8.24 0.00 5.92
5195 6039 2.276680 GGACATTTTCGCGCGCTC 60.277 61.111 30.48 17.47 0.00 5.03
5196 6040 2.740714 GGACATTTTCGCGCGCTCT 61.741 57.895 30.48 6.54 0.00 4.09
5197 6041 1.418342 GGACATTTTCGCGCGCTCTA 61.418 55.000 30.48 11.81 0.00 2.43
5198 6042 0.043822 GACATTTTCGCGCGCTCTAG 60.044 55.000 30.48 16.91 0.00 2.43
5199 6043 1.366961 CATTTTCGCGCGCTCTAGC 60.367 57.895 30.48 0.00 37.78 3.42
5210 6054 3.458163 CTCTAGCGGTGGCGGGAA 61.458 66.667 0.00 0.00 46.35 3.97
5211 6055 2.998480 TCTAGCGGTGGCGGGAAA 60.998 61.111 0.00 0.00 46.35 3.13
5212 6056 2.189521 CTAGCGGTGGCGGGAAAT 59.810 61.111 0.00 0.00 46.35 2.17
5213 6057 1.451387 CTAGCGGTGGCGGGAAATT 60.451 57.895 0.00 0.00 46.35 1.82
5214 6058 0.179067 CTAGCGGTGGCGGGAAATTA 60.179 55.000 0.00 0.00 46.35 1.40
5215 6059 0.179067 TAGCGGTGGCGGGAAATTAG 60.179 55.000 0.00 0.00 46.35 1.73
5216 6060 3.107447 CGGTGGCGGGAAATTAGC 58.893 61.111 0.00 0.00 0.00 3.09
5217 6061 2.819552 CGGTGGCGGGAAATTAGCG 61.820 63.158 0.00 0.00 0.00 4.26
5218 6062 2.407616 GTGGCGGGAAATTAGCGC 59.592 61.111 0.00 0.00 0.00 5.92
5219 6063 3.199190 TGGCGGGAAATTAGCGCG 61.199 61.111 0.00 0.00 43.43 6.86
5222 6066 3.560278 CGGGAAATTAGCGCGCGT 61.560 61.111 32.35 20.00 35.01 6.01
5223 6067 2.022762 GGGAAATTAGCGCGCGTG 59.977 61.111 32.35 16.86 0.00 5.34
5224 6068 2.022762 GGAAATTAGCGCGCGTGG 59.977 61.111 32.35 8.46 0.00 4.94
5225 6069 2.022762 GAAATTAGCGCGCGTGGG 59.977 61.111 32.35 8.91 0.00 4.61
5226 6070 2.435234 AAATTAGCGCGCGTGGGA 60.435 55.556 32.35 15.35 0.00 4.37
5227 6071 1.973137 GAAATTAGCGCGCGTGGGAA 61.973 55.000 32.35 19.46 0.00 3.97
5228 6072 1.579084 AAATTAGCGCGCGTGGGAAA 61.579 50.000 32.35 17.80 0.00 3.13
5229 6073 2.248274 AATTAGCGCGCGTGGGAAAC 62.248 55.000 32.35 12.72 0.00 2.78
5238 6082 2.202298 GTGGGAAACGATTGCGCG 60.202 61.111 0.00 0.00 42.48 6.86
5240 6084 2.202298 GGGAAACGATTGCGCGTG 60.202 61.111 8.43 0.00 44.86 5.34
5241 6085 2.202298 GGAAACGATTGCGCGTGG 60.202 61.111 8.43 0.00 44.86 4.94
5242 6086 2.202298 GAAACGATTGCGCGTGGG 60.202 61.111 8.43 0.00 44.86 4.61
5243 6087 3.661025 GAAACGATTGCGCGTGGGG 62.661 63.158 8.43 0.00 44.86 4.96
5247 6091 3.059386 GATTGCGCGTGGGGGAAA 61.059 61.111 8.43 0.00 29.32 3.13
5248 6092 2.598985 ATTGCGCGTGGGGGAAAA 60.599 55.556 8.43 0.00 29.32 2.29
5249 6093 2.542211 GATTGCGCGTGGGGGAAAAG 62.542 60.000 8.43 0.00 29.32 2.27
5255 6099 4.986708 GTGGGGGAAAAGGCGGCA 62.987 66.667 13.08 0.00 0.00 5.69
5256 6100 4.676951 TGGGGGAAAAGGCGGCAG 62.677 66.667 13.08 0.00 0.00 4.85
5259 6103 3.443925 GGGAAAAGGCGGCAGCTC 61.444 66.667 13.08 3.55 44.37 4.09
5260 6104 3.804193 GGAAAAGGCGGCAGCTCG 61.804 66.667 13.08 0.00 44.37 5.03
5271 6115 3.257561 CAGCTCGCGCGCTACATT 61.258 61.111 30.48 7.88 42.32 2.71
5272 6116 2.509336 AGCTCGCGCGCTACATTT 60.509 55.556 30.48 6.70 42.32 2.32
5273 6117 2.350091 GCTCGCGCGCTACATTTG 60.350 61.111 30.48 11.83 0.00 2.32
5274 6118 2.321060 CTCGCGCGCTACATTTGG 59.679 61.111 30.48 11.00 0.00 3.28
5275 6119 3.773649 CTCGCGCGCTACATTTGGC 62.774 63.158 30.48 0.00 0.00 4.52
5280 6124 4.886925 CGCTACATTTGGCGCGCC 62.887 66.667 42.35 42.35 44.64 6.53
5281 6125 4.886925 GCTACATTTGGCGCGCCG 62.887 66.667 41.73 30.38 39.42 6.46
5299 6143 3.401095 CGTTTGGCGCGCCTATAA 58.599 55.556 45.79 33.19 36.94 0.98
5300 6144 1.716760 CGTTTGGCGCGCCTATAAA 59.283 52.632 45.79 34.94 36.94 1.40
5301 6145 0.306533 CGTTTGGCGCGCCTATAAAT 59.693 50.000 45.79 0.00 36.94 1.40
5302 6146 1.268335 CGTTTGGCGCGCCTATAAATT 60.268 47.619 45.79 0.00 36.94 1.82
5303 6147 2.116366 GTTTGGCGCGCCTATAAATTG 58.884 47.619 45.79 0.00 36.94 2.32
5304 6148 0.030101 TTGGCGCGCCTATAAATTGC 59.970 50.000 45.79 19.89 36.94 3.56
5305 6149 1.098129 TGGCGCGCCTATAAATTGCA 61.098 50.000 45.79 23.01 36.94 4.08
5306 6150 0.385974 GGCGCGCCTATAAATTGCAG 60.386 55.000 41.71 0.00 0.00 4.41
5307 6151 0.998727 GCGCGCCTATAAATTGCAGC 60.999 55.000 23.24 0.00 0.00 5.25
5308 6152 0.722469 CGCGCCTATAAATTGCAGCG 60.722 55.000 0.00 8.18 45.91 5.18
5309 6153 3.077339 CGCCTATAAATTGCAGCGC 57.923 52.632 0.00 0.00 36.89 5.92
5310 6154 0.385974 CGCCTATAAATTGCAGCGCC 60.386 55.000 2.29 0.00 36.89 6.53
5311 6155 0.039165 GCCTATAAATTGCAGCGCCC 60.039 55.000 2.29 0.00 0.00 6.13
5312 6156 1.609208 CCTATAAATTGCAGCGCCCT 58.391 50.000 2.29 0.00 0.00 5.19
5313 6157 1.537202 CCTATAAATTGCAGCGCCCTC 59.463 52.381 2.29 0.00 0.00 4.30
5314 6158 2.498167 CTATAAATTGCAGCGCCCTCT 58.502 47.619 2.29 0.00 0.00 3.69
5315 6159 2.638480 ATAAATTGCAGCGCCCTCTA 57.362 45.000 2.29 0.00 0.00 2.43
5316 6160 1.663695 TAAATTGCAGCGCCCTCTAC 58.336 50.000 2.29 0.00 0.00 2.59
5317 6161 1.032114 AAATTGCAGCGCCCTCTACC 61.032 55.000 2.29 0.00 0.00 3.18
5318 6162 3.740128 ATTGCAGCGCCCTCTACCG 62.740 63.158 2.29 0.00 0.00 4.02
5323 6167 4.273257 GCGCCCTCTACCGCTCTC 62.273 72.222 0.00 0.00 46.14 3.20
5324 6168 2.517402 CGCCCTCTACCGCTCTCT 60.517 66.667 0.00 0.00 0.00 3.10
5325 6169 2.548295 CGCCCTCTACCGCTCTCTC 61.548 68.421 0.00 0.00 0.00 3.20
5326 6170 2.197605 GCCCTCTACCGCTCTCTCC 61.198 68.421 0.00 0.00 0.00 3.71
5327 6171 1.227664 CCCTCTACCGCTCTCTCCA 59.772 63.158 0.00 0.00 0.00 3.86
5328 6172 0.178975 CCCTCTACCGCTCTCTCCAT 60.179 60.000 0.00 0.00 0.00 3.41
5329 6173 1.243902 CCTCTACCGCTCTCTCCATC 58.756 60.000 0.00 0.00 0.00 3.51
5330 6174 1.202879 CCTCTACCGCTCTCTCCATCT 60.203 57.143 0.00 0.00 0.00 2.90
5331 6175 2.151202 CTCTACCGCTCTCTCCATCTC 58.849 57.143 0.00 0.00 0.00 2.75
5332 6176 1.771854 TCTACCGCTCTCTCCATCTCT 59.228 52.381 0.00 0.00 0.00 3.10
5333 6177 2.151202 CTACCGCTCTCTCCATCTCTC 58.849 57.143 0.00 0.00 0.00 3.20
5334 6178 0.467290 ACCGCTCTCTCCATCTCTCC 60.467 60.000 0.00 0.00 0.00 3.71
5335 6179 0.467106 CCGCTCTCTCCATCTCTCCA 60.467 60.000 0.00 0.00 0.00 3.86
5336 6180 1.619654 CGCTCTCTCCATCTCTCCAT 58.380 55.000 0.00 0.00 0.00 3.41
5337 6181 1.541147 CGCTCTCTCCATCTCTCCATC 59.459 57.143 0.00 0.00 0.00 3.51
5338 6182 1.541147 GCTCTCTCCATCTCTCCATCG 59.459 57.143 0.00 0.00 0.00 3.84
5339 6183 1.541147 CTCTCTCCATCTCTCCATCGC 59.459 57.143 0.00 0.00 0.00 4.58
5340 6184 0.602562 CTCTCCATCTCTCCATCGCC 59.397 60.000 0.00 0.00 0.00 5.54
5341 6185 0.829602 TCTCCATCTCTCCATCGCCC 60.830 60.000 0.00 0.00 0.00 6.13
5342 6186 0.831288 CTCCATCTCTCCATCGCCCT 60.831 60.000 0.00 0.00 0.00 5.19
5343 6187 0.829602 TCCATCTCTCCATCGCCCTC 60.830 60.000 0.00 0.00 0.00 4.30
5344 6188 0.831288 CCATCTCTCCATCGCCCTCT 60.831 60.000 0.00 0.00 0.00 3.69
5345 6189 0.317799 CATCTCTCCATCGCCCTCTG 59.682 60.000 0.00 0.00 0.00 3.35
5346 6190 1.470996 ATCTCTCCATCGCCCTCTGC 61.471 60.000 0.00 0.00 0.00 4.26
5347 6191 3.157252 TCTCCATCGCCCTCTGCC 61.157 66.667 0.00 0.00 36.24 4.85
5348 6192 4.598894 CTCCATCGCCCTCTGCCG 62.599 72.222 0.00 0.00 36.24 5.69
5350 6194 4.473520 CCATCGCCCTCTGCCGTT 62.474 66.667 0.00 0.00 36.24 4.44
5351 6195 3.197790 CATCGCCCTCTGCCGTTG 61.198 66.667 0.00 0.00 36.24 4.10
5352 6196 3.390521 ATCGCCCTCTGCCGTTGA 61.391 61.111 0.00 0.00 36.24 3.18
5353 6197 3.665675 ATCGCCCTCTGCCGTTGAC 62.666 63.158 0.00 0.00 36.24 3.18
5354 6198 4.680237 CGCCCTCTGCCGTTGACA 62.680 66.667 0.00 0.00 36.24 3.58
5355 6199 3.050275 GCCCTCTGCCGTTGACAC 61.050 66.667 0.00 0.00 0.00 3.67
5356 6200 2.738521 CCCTCTGCCGTTGACACG 60.739 66.667 0.00 0.00 46.71 4.49
5357 6201 3.414700 CCTCTGCCGTTGACACGC 61.415 66.667 0.00 0.00 45.72 5.34
5358 6202 3.414700 CTCTGCCGTTGACACGCC 61.415 66.667 0.00 0.00 45.72 5.68
5359 6203 4.228567 TCTGCCGTTGACACGCCA 62.229 61.111 0.00 0.00 45.72 5.69
5360 6204 3.049674 CTGCCGTTGACACGCCAT 61.050 61.111 0.00 0.00 45.72 4.40
5361 6205 3.027170 CTGCCGTTGACACGCCATC 62.027 63.158 0.00 0.00 45.72 3.51
5362 6206 3.047280 GCCGTTGACACGCCATCA 61.047 61.111 0.00 0.00 45.72 3.07
5363 6207 2.860293 CCGTTGACACGCCATCAC 59.140 61.111 0.00 0.00 45.72 3.06
5364 6208 2.677003 CCGTTGACACGCCATCACC 61.677 63.158 0.00 0.00 45.72 4.02
5365 6209 2.860293 GTTGACACGCCATCACCG 59.140 61.111 0.00 0.00 0.00 4.94
5366 6210 3.047280 TTGACACGCCATCACCGC 61.047 61.111 0.00 0.00 0.00 5.68
5373 6217 4.830765 GCCATCACCGCGCTACCA 62.831 66.667 5.56 0.00 0.00 3.25
5374 6218 2.108976 CCATCACCGCGCTACCAT 59.891 61.111 5.56 0.00 0.00 3.55
5375 6219 2.246739 CCATCACCGCGCTACCATG 61.247 63.158 5.56 2.49 0.00 3.66
5376 6220 2.588877 ATCACCGCGCTACCATGC 60.589 61.111 5.56 0.00 0.00 4.06
5377 6221 4.830765 TCACCGCGCTACCATGCC 62.831 66.667 5.56 0.00 0.00 4.40
5404 6248 4.528039 CCGGGGAGGTACGGGCTA 62.528 72.222 0.00 0.00 46.08 3.93
5405 6249 3.222121 CGGGGAGGTACGGGCTAC 61.222 72.222 0.00 0.00 0.00 3.58
5406 6250 2.841516 GGGGAGGTACGGGCTACC 60.842 72.222 0.00 0.00 45.19 3.18
5438 6282 4.487412 CGTCCGTCCGGCACCTAC 62.487 72.222 0.00 0.00 34.68 3.18
5439 6283 3.066814 GTCCGTCCGGCACCTACT 61.067 66.667 0.00 0.00 34.68 2.57
5440 6284 2.753043 TCCGTCCGGCACCTACTC 60.753 66.667 0.00 0.00 34.68 2.59
5441 6285 3.834799 CCGTCCGGCACCTACTCC 61.835 72.222 0.00 0.00 0.00 3.85
5442 6286 4.189188 CGTCCGGCACCTACTCCG 62.189 72.222 0.00 0.00 44.89 4.63
5443 6287 4.509737 GTCCGGCACCTACTCCGC 62.510 72.222 0.00 0.00 44.01 5.54
5447 6291 4.208686 GGCACCTACTCCGCCGAG 62.209 72.222 0.09 0.09 42.32 4.63
5448 6292 3.138798 GCACCTACTCCGCCGAGA 61.139 66.667 9.16 0.00 38.52 4.04
5449 6293 2.491022 GCACCTACTCCGCCGAGAT 61.491 63.158 9.16 0.00 38.52 2.75
5450 6294 2.017559 GCACCTACTCCGCCGAGATT 62.018 60.000 9.16 0.00 38.52 2.40
5451 6295 0.030908 CACCTACTCCGCCGAGATTC 59.969 60.000 9.16 0.00 38.52 2.52
5452 6296 1.283181 CCTACTCCGCCGAGATTCG 59.717 63.158 9.16 0.00 38.52 3.34
5461 6305 3.884350 CGAGATTCGGTCGGGCGA 61.884 66.667 0.00 0.00 36.00 5.54
5462 6306 2.278661 GAGATTCGGTCGGGCGAC 60.279 66.667 0.00 0.00 43.87 5.19
5463 6307 4.189188 AGATTCGGTCGGGCGACG 62.189 66.667 0.00 0.00 45.41 5.12
5492 6336 4.454554 CGTCTCGGAACCTTCGAC 57.545 61.111 0.00 0.00 32.86 4.20
5493 6337 1.577922 CGTCTCGGAACCTTCGACA 59.422 57.895 0.00 0.00 32.86 4.35
5494 6338 0.728466 CGTCTCGGAACCTTCGACAC 60.728 60.000 0.00 0.00 32.86 3.67
5495 6339 0.388263 GTCTCGGAACCTTCGACACC 60.388 60.000 0.00 0.00 32.86 4.16
5496 6340 1.443872 CTCGGAACCTTCGACACCG 60.444 63.158 0.00 0.00 44.09 4.94
5497 6341 3.110178 CGGAACCTTCGACACCGC 61.110 66.667 0.00 0.00 37.32 5.68
5498 6342 2.741211 GGAACCTTCGACACCGCC 60.741 66.667 0.00 0.00 35.37 6.13
5499 6343 2.741211 GAACCTTCGACACCGCCC 60.741 66.667 0.00 0.00 35.37 6.13
5500 6344 3.524648 GAACCTTCGACACCGCCCA 62.525 63.158 0.00 0.00 35.37 5.36
5501 6345 3.530910 AACCTTCGACACCGCCCAG 62.531 63.158 0.00 0.00 35.37 4.45
5503 6347 3.691342 CTTCGACACCGCCCAGGA 61.691 66.667 0.00 0.00 45.00 3.86
5504 6348 3.234630 CTTCGACACCGCCCAGGAA 62.235 63.158 0.00 0.00 45.00 3.36
5505 6349 3.234630 TTCGACACCGCCCAGGAAG 62.235 63.158 0.00 0.00 45.00 3.46
5506 6350 4.760047 CGACACCGCCCAGGAAGG 62.760 72.222 0.00 0.00 45.00 3.46
5555 6399 4.135153 CTCCTGCGGTCCCGTCAG 62.135 72.222 17.54 17.54 42.09 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 177 2.268076 CCAACTCTGGTTTGGCCCG 61.268 63.158 0.00 0.00 38.00 6.13
170 178 1.908299 CCCAACTCTGGTTTGGCCC 60.908 63.158 0.00 0.00 41.72 5.80
171 179 3.777556 CCCAACTCTGGTTTGGCC 58.222 61.111 0.00 0.00 41.72 5.36
173 181 1.908299 GGGCCCAACTCTGGTTTGG 60.908 63.158 19.95 0.00 41.72 3.28
174 182 2.268076 CGGGCCCAACTCTGGTTTG 61.268 63.158 24.92 0.00 41.72 2.93
185 594 2.236223 TTTATTACGTCGCGGGCCCA 62.236 55.000 24.92 0.00 0.00 5.36
231 652 2.279120 CGGTCCGCTCAGAGCATC 60.279 66.667 22.49 10.94 42.58 3.91
261 682 0.322322 TCGCCTGGTACGGTTTTGAT 59.678 50.000 0.00 0.00 0.00 2.57
426 847 2.040884 ATGGGGAGAGCGGCCTTA 60.041 61.111 0.00 0.00 0.00 2.69
478 899 5.824624 TGTCTCCCTGATCATAATTCAAAGC 59.175 40.000 0.00 0.00 0.00 3.51
480 901 7.126268 TCTCTGTCTCCCTGATCATAATTCAAA 59.874 37.037 0.00 0.00 0.00 2.69
562 983 1.085893 CGTGGCATCATACAAGTGCA 58.914 50.000 0.00 0.00 40.53 4.57
563 984 1.086696 ACGTGGCATCATACAAGTGC 58.913 50.000 0.00 0.00 38.12 4.40
564 985 3.829886 AAACGTGGCATCATACAAGTG 57.170 42.857 0.00 0.00 30.00 3.16
565 986 3.818210 TGAAAACGTGGCATCATACAAGT 59.182 39.130 0.00 0.00 0.00 3.16
566 987 4.406069 CTGAAAACGTGGCATCATACAAG 58.594 43.478 0.00 0.00 0.00 3.16
628 1049 1.004560 ATCTGGGCGATGCATACGG 60.005 57.895 16.56 6.65 0.00 4.02
629 1050 2.156542 CATCTGGGCGATGCATACG 58.843 57.895 0.00 6.68 42.75 3.06
636 1057 2.123428 GCCTTTGCATCTGGGCGAT 61.123 57.895 0.00 0.00 37.47 4.58
637 1058 2.751436 GCCTTTGCATCTGGGCGA 60.751 61.111 0.00 0.00 37.47 5.54
638 1059 3.830192 GGCCTTTGCATCTGGGCG 61.830 66.667 10.08 0.00 44.91 6.13
639 1060 3.830192 CGGCCTTTGCATCTGGGC 61.830 66.667 14.03 14.03 43.42 5.36
640 1061 3.142838 CCGGCCTTTGCATCTGGG 61.143 66.667 0.00 0.00 40.13 4.45
641 1062 3.142838 CCCGGCCTTTGCATCTGG 61.143 66.667 0.00 0.00 40.13 3.86
642 1063 3.142838 CCCCGGCCTTTGCATCTG 61.143 66.667 0.00 0.00 40.13 2.90
643 1064 4.447342 CCCCCGGCCTTTGCATCT 62.447 66.667 0.00 0.00 40.13 2.90
644 1065 4.759205 ACCCCCGGCCTTTGCATC 62.759 66.667 0.00 0.00 40.13 3.91
645 1066 4.759205 GACCCCCGGCCTTTGCAT 62.759 66.667 0.00 0.00 40.13 3.96
647 1068 4.759205 ATGACCCCCGGCCTTTGC 62.759 66.667 0.00 0.00 0.00 3.68
648 1069 2.440247 GATGACCCCCGGCCTTTG 60.440 66.667 0.00 0.00 0.00 2.77
649 1070 3.739613 GGATGACCCCCGGCCTTT 61.740 66.667 0.00 0.00 0.00 3.11
650 1071 4.760220 AGGATGACCCCCGGCCTT 62.760 66.667 0.00 0.00 36.73 4.35
654 1075 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
655 1076 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
656 1077 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
657 1078 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
750 1171 5.182487 AGACCCGTGCAAAATTTTCTTTTT 58.818 33.333 0.00 0.00 0.00 1.94
760 1181 1.686355 ACATTGAGACCCGTGCAAAA 58.314 45.000 0.00 0.00 0.00 2.44
761 1182 2.552599 TACATTGAGACCCGTGCAAA 57.447 45.000 0.00 0.00 0.00 3.68
768 1189 4.098044 TCGTGAGATCTTACATTGAGACCC 59.902 45.833 16.95 0.00 33.31 4.46
835 1258 6.591448 CCCCTGCATTTTCTTTACTGATTTTC 59.409 38.462 0.00 0.00 0.00 2.29
838 1261 5.332743 TCCCCTGCATTTTCTTTACTGATT 58.667 37.500 0.00 0.00 0.00 2.57
860 1283 2.785258 GCGCGTGTCCAAATCCTC 59.215 61.111 8.43 0.00 0.00 3.71
1412 1865 5.481824 AGTCTCAATAGTGTCCTGTGATGAA 59.518 40.000 0.00 0.00 0.00 2.57
1420 1873 1.478510 CGGCAGTCTCAATAGTGTCCT 59.521 52.381 0.00 0.00 0.00 3.85
1421 1874 1.204941 ACGGCAGTCTCAATAGTGTCC 59.795 52.381 0.00 0.00 0.00 4.02
1422 1875 2.094700 TCACGGCAGTCTCAATAGTGTC 60.095 50.000 0.00 0.00 0.00 3.67
1423 1876 1.893137 TCACGGCAGTCTCAATAGTGT 59.107 47.619 0.00 0.00 0.00 3.55
1424 1877 2.654749 TCACGGCAGTCTCAATAGTG 57.345 50.000 0.00 0.00 0.00 2.74
1425 1878 2.739932 GCATCACGGCAGTCTCAATAGT 60.740 50.000 0.00 0.00 0.00 2.12
1426 1879 1.863454 GCATCACGGCAGTCTCAATAG 59.137 52.381 0.00 0.00 0.00 1.73
1427 1880 1.482182 AGCATCACGGCAGTCTCAATA 59.518 47.619 0.00 0.00 35.83 1.90
1428 1881 0.251354 AGCATCACGGCAGTCTCAAT 59.749 50.000 0.00 0.00 35.83 2.57
1429 1882 0.035317 AAGCATCACGGCAGTCTCAA 59.965 50.000 0.00 0.00 35.83 3.02
1440 1893 1.510623 CGCGAACTGCAAGCATCAC 60.511 57.895 0.00 0.00 46.97 3.06
1482 1935 2.118403 TCTTCCCCTGTTCCTTGTCT 57.882 50.000 0.00 0.00 0.00 3.41
1491 1944 1.617947 GCGTGAGGATCTTCCCCTGT 61.618 60.000 1.90 0.00 37.19 4.00
1548 2001 2.099756 GCCCTGCATGGAGTTGTATTTC 59.900 50.000 12.80 0.00 38.35 2.17
1551 2004 0.921896 AGCCCTGCATGGAGTTGTAT 59.078 50.000 12.80 0.00 38.35 2.29
1642 2096 0.394565 GGCGGGCAGATTGAGTAGAT 59.605 55.000 0.00 0.00 0.00 1.98
1657 2111 1.745489 GCTCAAAGTAGTGGGGCGG 60.745 63.158 0.00 0.00 0.00 6.13
1717 2172 4.399303 ACCATAAATTAAGTCACAGCAGCC 59.601 41.667 0.00 0.00 0.00 4.85
1726 2181 7.865706 ACAGACATGGACCATAAATTAAGTC 57.134 36.000 6.67 8.56 0.00 3.01
1743 2199 4.262164 GGATCTGCAAACCAAAACAGACAT 60.262 41.667 0.00 0.00 41.63 3.06
1941 2432 4.515567 GCCATTTGCCCTACTATGTAGAAC 59.484 45.833 6.33 0.00 0.00 3.01
2003 2495 6.343716 TGTCACGGTATAAGGTCAACTTTA 57.656 37.500 0.00 0.00 40.64 1.85
2019 2511 2.355197 TGGCAATAGTTCATGTCACGG 58.645 47.619 0.00 0.00 0.00 4.94
2059 2551 3.118592 AGTCTACCTCTACTGCCAAATGC 60.119 47.826 0.00 0.00 41.77 3.56
2067 2559 6.768861 ACTATTGCTGTAGTCTACCTCTACTG 59.231 42.308 7.56 0.00 38.67 2.74
2068 2560 6.902408 ACTATTGCTGTAGTCTACCTCTACT 58.098 40.000 7.56 0.00 38.67 2.57
2214 2752 3.495753 CCAAAACTGTCGGTGTAACTACC 59.504 47.826 0.00 0.00 36.74 3.18
2225 2763 0.738389 AGGCACAACCAAAACTGTCG 59.262 50.000 0.00 0.00 43.14 4.35
2256 2794 7.441458 GCTCATTTGGTAGAAATACCGAAGTAT 59.559 37.037 11.68 0.00 44.30 2.12
2854 3395 5.885912 ACCCCTAAAACACTGTGCATTATAG 59.114 40.000 7.90 4.11 0.00 1.31
2862 3403 5.160607 TCATCTACCCCTAAAACACTGTG 57.839 43.478 6.19 6.19 0.00 3.66
2952 3493 4.101585 TCTGATTCAAGATAAGACGCCCAT 59.898 41.667 0.00 0.00 0.00 4.00
2989 3530 3.496130 GGGAATGCAAGTATGTCAGATCG 59.504 47.826 0.00 0.00 0.00 3.69
3038 3579 5.022122 TCCAATTGCCTGATTGATAAACCA 58.978 37.500 0.00 0.00 38.93 3.67
3107 3648 4.060900 AGACACTGTGTATTCAGCAACTG 58.939 43.478 14.31 0.00 38.84 3.16
3125 3666 6.911250 TGAGTAGTAAAACATCCTGAGACA 57.089 37.500 0.00 0.00 0.00 3.41
3154 3698 3.655276 TGAGTCCACTCCTAAACGAAC 57.345 47.619 4.25 0.00 42.20 3.95
3174 3718 7.814107 CCTACAAAACATGATTGTTAACTGCAT 59.186 33.333 20.81 5.06 45.30 3.96
3208 3752 3.005261 CGGTCTCAGAATCAGGTGATAGG 59.995 52.174 0.00 0.00 33.73 2.57
3221 3765 1.035923 GGAGATGATGCGGTCTCAGA 58.964 55.000 4.95 0.00 42.04 3.27
3321 3865 8.087750 CCAACAATAAACAACTGGATAACACAT 58.912 33.333 0.00 0.00 0.00 3.21
3378 3924 7.726216 CATGTATACCATGGTTCTAGTCAAGA 58.274 38.462 25.38 0.00 46.03 3.02
3537 4085 4.440103 GTGTGCTTTAGGACGATACATACG 59.560 45.833 0.00 0.00 39.39 3.06
3565 4113 5.935206 TGTGGCAACTTCGATGAGTAATAAA 59.065 36.000 5.16 0.00 37.61 1.40
3582 4130 1.277842 ACCATACTCGTCATGTGGCAA 59.722 47.619 0.00 0.00 33.24 4.52
3589 4137 5.511373 CCCAATACATCACCATACTCGTCAT 60.511 44.000 0.00 0.00 0.00 3.06
3674 4222 0.110486 GAAAGCCAACCTGTCTCCCA 59.890 55.000 0.00 0.00 0.00 4.37
3877 4430 1.068474 GCAGTGTTTACGACTCGCAT 58.932 50.000 0.00 0.00 0.00 4.73
3910 4463 1.449246 CCTTCCCTTCTGCTGCTCG 60.449 63.158 0.00 0.00 0.00 5.03
3925 4478 2.494870 CAGCTGCATAAAAAGAGCCCTT 59.505 45.455 0.00 0.00 31.43 3.95
3926 4479 2.097825 CAGCTGCATAAAAAGAGCCCT 58.902 47.619 0.00 0.00 31.43 5.19
3927 4480 1.821136 ACAGCTGCATAAAAAGAGCCC 59.179 47.619 15.27 0.00 31.43 5.19
3928 4481 3.440173 TGTACAGCTGCATAAAAAGAGCC 59.560 43.478 15.27 0.00 31.43 4.70
3929 4482 4.685169 TGTACAGCTGCATAAAAAGAGC 57.315 40.909 15.27 0.00 0.00 4.09
3978 4532 1.336440 TGTGGCATGTGCTGTAAACAC 59.664 47.619 4.84 4.23 41.70 3.32
4048 4614 0.932399 CACTTGTTTTGGCAGCTTGC 59.068 50.000 0.00 0.00 44.08 4.01
4050 4616 0.536260 TGCACTTGTTTTGGCAGCTT 59.464 45.000 0.00 0.00 0.00 3.74
4069 4635 1.977056 TATATGGCTCGTCGTGAGGT 58.023 50.000 8.99 0.00 45.38 3.85
4070 4636 2.488153 TGATATATGGCTCGTCGTGAGG 59.512 50.000 8.99 0.00 45.38 3.86
4072 4638 3.058224 CAGTGATATATGGCTCGTCGTGA 60.058 47.826 0.00 0.00 0.00 4.35
4073 4639 3.237628 CAGTGATATATGGCTCGTCGTG 58.762 50.000 0.00 0.00 0.00 4.35
4074 4640 2.351835 GCAGTGATATATGGCTCGTCGT 60.352 50.000 0.00 0.00 0.00 4.34
4076 4642 2.029020 TGGCAGTGATATATGGCTCGTC 60.029 50.000 0.00 0.00 42.16 4.20
4077 4643 1.970640 TGGCAGTGATATATGGCTCGT 59.029 47.619 0.00 0.00 42.16 4.18
4078 4644 2.749280 TGGCAGTGATATATGGCTCG 57.251 50.000 0.00 0.00 42.16 5.03
4080 4646 3.891366 GGTTTTGGCAGTGATATATGGCT 59.109 43.478 0.00 0.00 42.16 4.75
4081 4647 3.005791 GGGTTTTGGCAGTGATATATGGC 59.994 47.826 0.00 2.64 42.01 4.40
4082 4648 4.279169 CAGGGTTTTGGCAGTGATATATGG 59.721 45.833 0.00 0.00 0.00 2.74
4083 4649 4.279169 CCAGGGTTTTGGCAGTGATATATG 59.721 45.833 0.00 0.00 0.00 1.78
4084 4650 4.167892 TCCAGGGTTTTGGCAGTGATATAT 59.832 41.667 0.00 0.00 38.16 0.86
4085 4651 3.525609 TCCAGGGTTTTGGCAGTGATATA 59.474 43.478 0.00 0.00 38.16 0.86
4086 4652 2.311542 TCCAGGGTTTTGGCAGTGATAT 59.688 45.455 0.00 0.00 38.16 1.63
4087 4653 1.707989 TCCAGGGTTTTGGCAGTGATA 59.292 47.619 0.00 0.00 38.16 2.15
4088 4654 0.482446 TCCAGGGTTTTGGCAGTGAT 59.518 50.000 0.00 0.00 38.16 3.06
4089 4655 0.178992 CTCCAGGGTTTTGGCAGTGA 60.179 55.000 0.00 0.00 38.16 3.41
4090 4656 0.468029 ACTCCAGGGTTTTGGCAGTG 60.468 55.000 0.00 0.00 38.16 3.66
4091 4657 0.261696 AACTCCAGGGTTTTGGCAGT 59.738 50.000 0.00 0.00 38.16 4.40
4092 4658 1.069049 CAAACTCCAGGGTTTTGGCAG 59.931 52.381 0.00 0.00 37.32 4.85
4093 4659 1.118838 CAAACTCCAGGGTTTTGGCA 58.881 50.000 0.00 0.00 37.32 4.92
4094 4660 1.341209 CTCAAACTCCAGGGTTTTGGC 59.659 52.381 11.72 0.00 37.32 4.52
4095 4661 2.944129 TCTCAAACTCCAGGGTTTTGG 58.056 47.619 11.72 5.44 37.32 3.28
4096 4662 4.682787 GTTTCTCAAACTCCAGGGTTTTG 58.317 43.478 7.17 7.17 37.32 2.44
4160 4739 1.197036 GGCCTACAGTTTGAAAGCGAC 59.803 52.381 0.00 0.00 0.00 5.19
4185 4768 9.258826 CGAGTTGAAGAAAGATCATCTATGAAT 57.741 33.333 0.00 0.00 40.69 2.57
4310 4895 3.745723 GGAACCTTCAGGCAGGAAA 57.254 52.632 0.00 0.00 39.32 3.13
4424 5028 1.884579 TGTACAACTCTCGGTCTCCAC 59.115 52.381 0.00 0.00 0.00 4.02
4563 5181 0.034059 AGACACAGTTTCTGCTCCGG 59.966 55.000 0.00 0.00 34.37 5.14
4564 5182 1.423395 GAGACACAGTTTCTGCTCCG 58.577 55.000 0.00 0.00 34.37 4.63
4594 5212 4.307432 AGTCCTACACAACAACATCGAAG 58.693 43.478 0.00 0.00 0.00 3.79
4602 5220 4.839550 TGGTATGGTAGTCCTACACAACAA 59.160 41.667 6.78 0.00 37.78 2.83
4603 5221 4.418359 TGGTATGGTAGTCCTACACAACA 58.582 43.478 6.78 0.00 37.78 3.33
4618 5236 0.036732 ATATGCCACCGCTGGTATGG 59.963 55.000 10.31 3.54 42.50 2.74
4623 5241 3.289834 GCCATATGCCACCGCTGG 61.290 66.667 0.00 0.00 41.13 4.85
4655 5273 2.128035 CGCTCCTAGTTGCTATTTCGG 58.872 52.381 3.32 0.00 0.00 4.30
4692 5321 4.500545 GCTTATCGAGACTCATGTCATGGT 60.501 45.833 12.90 9.43 45.20 3.55
4700 5329 4.063998 TGCATTGCTTATCGAGACTCAT 57.936 40.909 10.49 0.00 0.00 2.90
4704 5333 4.722194 TGTTTTGCATTGCTTATCGAGAC 58.278 39.130 10.49 0.00 0.00 3.36
4718 5347 3.529533 CACCCAATTTGACTGTTTTGCA 58.470 40.909 0.00 0.00 0.00 4.08
4719 5348 2.871633 CCACCCAATTTGACTGTTTTGC 59.128 45.455 0.00 0.00 0.00 3.68
4720 5349 2.871633 GCCACCCAATTTGACTGTTTTG 59.128 45.455 0.00 0.00 0.00 2.44
4721 5350 2.503356 TGCCACCCAATTTGACTGTTTT 59.497 40.909 0.00 0.00 0.00 2.43
4861 5509 2.667473 AATCGGTACTCCAAACTCCG 57.333 50.000 0.00 0.00 42.12 4.63
4875 5523 1.069500 CGGCCCGCTTTAATTAATCGG 60.069 52.381 22.48 22.48 39.79 4.18
4992 5821 1.194495 ACAACGTCGACTGAACGAAC 58.806 50.000 14.70 0.00 43.75 3.95
4993 5822 2.375110 GTACAACGTCGACTGAACGAA 58.625 47.619 14.70 0.00 43.75 3.85
4994 5823 1.657260 CGTACAACGTCGACTGAACGA 60.657 52.381 14.70 0.00 36.74 3.85
4995 5824 0.693817 CGTACAACGTCGACTGAACG 59.306 55.000 14.70 11.84 36.74 3.95
5009 5838 0.033642 TGTTTGATGGGCGTCGTACA 59.966 50.000 0.00 0.00 0.00 2.90
5062 5891 2.933492 GCCCTTTTAAATTTGGCGGGAC 60.933 50.000 16.28 7.56 31.85 4.46
5103 5947 0.461548 TAGCTCACAAGGCAGATCCG 59.538 55.000 0.00 0.00 40.77 4.18
5109 5953 3.282021 GAATCCAATAGCTCACAAGGCA 58.718 45.455 0.00 0.00 0.00 4.75
5133 5977 3.711190 TGGCTGTTGGAGATGCTCTTATA 59.289 43.478 0.00 0.00 0.00 0.98
5134 5978 2.507058 TGGCTGTTGGAGATGCTCTTAT 59.493 45.455 0.00 0.00 0.00 1.73
5140 5984 2.413142 GGCTGGCTGTTGGAGATGC 61.413 63.158 0.00 0.00 0.00 3.91
5141 5985 1.001764 TGGCTGGCTGTTGGAGATG 60.002 57.895 2.00 0.00 0.00 2.90
5142 5986 1.001641 GTGGCTGGCTGTTGGAGAT 60.002 57.895 2.00 0.00 0.00 2.75
5143 5987 2.431683 GTGGCTGGCTGTTGGAGA 59.568 61.111 2.00 0.00 0.00 3.71
5144 5988 3.052082 CGTGGCTGGCTGTTGGAG 61.052 66.667 2.00 0.00 0.00 3.86
5148 5992 4.892965 TTGGCGTGGCTGGCTGTT 62.893 61.111 2.00 0.00 35.06 3.16
5149 5993 4.892965 TTTGGCGTGGCTGGCTGT 62.893 61.111 2.00 0.00 35.06 4.40
5150 5994 3.562779 CTTTTGGCGTGGCTGGCTG 62.563 63.158 2.00 0.00 35.06 4.85
5151 5995 3.297620 CTTTTGGCGTGGCTGGCT 61.298 61.111 2.00 0.00 35.06 4.75
5152 5996 3.294493 TCTTTTGGCGTGGCTGGC 61.294 61.111 0.00 0.00 0.00 4.85
5153 5997 2.644992 GTCTTTTGGCGTGGCTGG 59.355 61.111 0.00 0.00 0.00 4.85
5154 5998 2.252260 CGTCTTTTGGCGTGGCTG 59.748 61.111 0.00 0.00 43.40 4.85
5177 6021 3.718480 GAGCGCGCGAAAATGTCCC 62.718 63.158 37.18 12.54 0.00 4.46
5178 6022 1.418342 TAGAGCGCGCGAAAATGTCC 61.418 55.000 37.18 13.39 0.00 4.02
5179 6023 0.043822 CTAGAGCGCGCGAAAATGTC 60.044 55.000 37.18 15.96 0.00 3.06
5180 6024 1.999051 CTAGAGCGCGCGAAAATGT 59.001 52.632 37.18 16.37 0.00 2.71
5181 6025 1.366961 GCTAGAGCGCGCGAAAATG 60.367 57.895 37.18 20.17 0.00 2.32
5182 6026 3.006706 GCTAGAGCGCGCGAAAAT 58.993 55.556 37.18 18.04 0.00 1.82
5193 6037 2.311688 ATTTCCCGCCACCGCTAGAG 62.312 60.000 0.00 0.00 0.00 2.43
5194 6038 1.906105 AATTTCCCGCCACCGCTAGA 61.906 55.000 0.00 0.00 0.00 2.43
5195 6039 0.179067 TAATTTCCCGCCACCGCTAG 60.179 55.000 0.00 0.00 0.00 3.42
5196 6040 0.179067 CTAATTTCCCGCCACCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
5197 6041 1.451387 CTAATTTCCCGCCACCGCT 60.451 57.895 0.00 0.00 0.00 5.52
5198 6042 3.107447 CTAATTTCCCGCCACCGC 58.893 61.111 0.00 0.00 0.00 5.68
5199 6043 2.819552 CGCTAATTTCCCGCCACCG 61.820 63.158 0.00 0.00 0.00 4.94
5200 6044 3.107447 CGCTAATTTCCCGCCACC 58.893 61.111 0.00 0.00 0.00 4.61
5201 6045 2.407616 GCGCTAATTTCCCGCCAC 59.592 61.111 0.00 0.00 41.72 5.01
5202 6046 3.199190 CGCGCTAATTTCCCGCCA 61.199 61.111 5.56 0.00 44.42 5.69
5203 6047 4.607606 GCGCGCTAATTTCCCGCC 62.608 66.667 26.67 0.00 44.42 6.13
5204 6048 4.938080 CGCGCGCTAATTTCCCGC 62.938 66.667 30.48 0.00 43.88 6.13
5205 6049 3.560278 ACGCGCGCTAATTTCCCG 61.560 61.111 32.58 12.54 0.00 5.14
5206 6050 2.022762 CACGCGCGCTAATTTCCC 59.977 61.111 32.58 0.00 0.00 3.97
5207 6051 2.022762 CCACGCGCGCTAATTTCC 59.977 61.111 32.58 0.00 0.00 3.13
5208 6052 1.973137 TTCCCACGCGCGCTAATTTC 61.973 55.000 32.58 0.00 0.00 2.17
5209 6053 1.579084 TTTCCCACGCGCGCTAATTT 61.579 50.000 32.58 6.00 0.00 1.82
5210 6054 2.036006 TTTCCCACGCGCGCTAATT 61.036 52.632 32.58 6.94 0.00 1.40
5211 6055 2.435234 TTTCCCACGCGCGCTAAT 60.435 55.556 32.58 11.87 0.00 1.73
5212 6056 3.416382 GTTTCCCACGCGCGCTAA 61.416 61.111 32.58 16.05 0.00 3.09
5221 6065 2.202298 CGCGCAATCGTTTCCCAC 60.202 61.111 8.75 0.00 38.14 4.61
5222 6066 2.666862 ACGCGCAATCGTTTCCCA 60.667 55.556 5.73 0.00 40.07 4.37
5223 6067 2.202298 CACGCGCAATCGTTTCCC 60.202 61.111 5.73 0.00 41.21 3.97
5224 6068 2.202298 CCACGCGCAATCGTTTCC 60.202 61.111 5.73 0.00 41.21 3.13
5225 6069 2.202298 CCCACGCGCAATCGTTTC 60.202 61.111 5.73 0.00 41.21 2.78
5226 6070 3.732892 CCCCACGCGCAATCGTTT 61.733 61.111 5.73 0.00 41.21 3.60
5230 6074 2.542211 CTTTTCCCCCACGCGCAATC 62.542 60.000 5.73 0.00 0.00 2.67
5231 6075 2.598985 TTTTCCCCCACGCGCAAT 60.599 55.556 5.73 0.00 0.00 3.56
5232 6076 3.291383 CTTTTCCCCCACGCGCAA 61.291 61.111 5.73 0.00 0.00 4.85
5238 6082 4.986708 TGCCGCCTTTTCCCCCAC 62.987 66.667 0.00 0.00 0.00 4.61
5239 6083 4.676951 CTGCCGCCTTTTCCCCCA 62.677 66.667 0.00 0.00 0.00 4.96
5242 6086 3.443925 GAGCTGCCGCCTTTTCCC 61.444 66.667 0.00 0.00 36.60 3.97
5243 6087 3.804193 CGAGCTGCCGCCTTTTCC 61.804 66.667 0.00 0.00 36.60 3.13
5257 6101 2.321060 CCAAATGTAGCGCGCGAG 59.679 61.111 37.18 8.39 0.00 5.03
5258 6102 3.860125 GCCAAATGTAGCGCGCGA 61.860 61.111 37.18 19.65 0.00 5.87
5264 6108 4.886925 CGGCGCGCCAAATGTAGC 62.887 66.667 45.26 18.93 35.37 3.58
5287 6131 0.385974 CTGCAATTTATAGGCGCGCC 60.386 55.000 42.34 42.34 0.00 6.53
5288 6132 0.998727 GCTGCAATTTATAGGCGCGC 60.999 55.000 25.94 25.94 0.00 6.86
5289 6133 0.722469 CGCTGCAATTTATAGGCGCG 60.722 55.000 0.00 0.00 41.22 6.86
5290 6134 3.077339 CGCTGCAATTTATAGGCGC 57.923 52.632 0.00 0.00 36.46 6.53
5291 6135 0.385974 GGCGCTGCAATTTATAGGCG 60.386 55.000 7.64 8.18 44.40 5.52
5292 6136 0.039165 GGGCGCTGCAATTTATAGGC 60.039 55.000 7.64 0.00 0.00 3.93
5293 6137 1.537202 GAGGGCGCTGCAATTTATAGG 59.463 52.381 8.56 0.00 0.00 2.57
5294 6138 2.498167 AGAGGGCGCTGCAATTTATAG 58.502 47.619 8.56 0.00 0.00 1.31
5295 6139 2.638480 AGAGGGCGCTGCAATTTATA 57.362 45.000 8.56 0.00 0.00 0.98
5296 6140 2.222027 GTAGAGGGCGCTGCAATTTAT 58.778 47.619 8.56 0.00 0.00 1.40
5297 6141 1.663695 GTAGAGGGCGCTGCAATTTA 58.336 50.000 8.56 0.00 0.00 1.40
5298 6142 1.032114 GGTAGAGGGCGCTGCAATTT 61.032 55.000 8.56 0.00 0.00 1.82
5299 6143 1.452108 GGTAGAGGGCGCTGCAATT 60.452 57.895 8.56 0.00 0.00 2.32
5300 6144 2.190578 GGTAGAGGGCGCTGCAAT 59.809 61.111 8.56 0.00 0.00 3.56
5301 6145 4.451150 CGGTAGAGGGCGCTGCAA 62.451 66.667 8.56 0.00 0.00 4.08
5304 6148 4.577246 GAGCGGTAGAGGGCGCTG 62.577 72.222 8.56 0.00 37.86 5.18
5305 6149 4.824515 AGAGCGGTAGAGGGCGCT 62.825 66.667 7.64 1.38 40.62 5.92
5306 6150 4.273257 GAGAGCGGTAGAGGGCGC 62.273 72.222 0.00 0.00 0.00 6.53
5307 6151 2.517402 AGAGAGCGGTAGAGGGCG 60.517 66.667 0.00 0.00 0.00 6.13
5308 6152 2.197605 GGAGAGAGCGGTAGAGGGC 61.198 68.421 0.00 0.00 0.00 5.19
5309 6153 0.178975 ATGGAGAGAGCGGTAGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
5310 6154 1.202879 AGATGGAGAGAGCGGTAGAGG 60.203 57.143 0.00 0.00 0.00 3.69
5311 6155 2.151202 GAGATGGAGAGAGCGGTAGAG 58.849 57.143 0.00 0.00 0.00 2.43
5312 6156 1.771854 AGAGATGGAGAGAGCGGTAGA 59.228 52.381 0.00 0.00 0.00 2.59
5313 6157 2.151202 GAGAGATGGAGAGAGCGGTAG 58.849 57.143 0.00 0.00 0.00 3.18
5314 6158 1.202830 GGAGAGATGGAGAGAGCGGTA 60.203 57.143 0.00 0.00 0.00 4.02
5315 6159 0.467290 GGAGAGATGGAGAGAGCGGT 60.467 60.000 0.00 0.00 0.00 5.68
5316 6160 0.467106 TGGAGAGATGGAGAGAGCGG 60.467 60.000 0.00 0.00 0.00 5.52
5317 6161 1.541147 GATGGAGAGATGGAGAGAGCG 59.459 57.143 0.00 0.00 0.00 5.03
5318 6162 1.541147 CGATGGAGAGATGGAGAGAGC 59.459 57.143 0.00 0.00 0.00 4.09
5319 6163 1.541147 GCGATGGAGAGATGGAGAGAG 59.459 57.143 0.00 0.00 0.00 3.20
5320 6164 1.614996 GCGATGGAGAGATGGAGAGA 58.385 55.000 0.00 0.00 0.00 3.10
5321 6165 0.602562 GGCGATGGAGAGATGGAGAG 59.397 60.000 0.00 0.00 0.00 3.20
5322 6166 0.829602 GGGCGATGGAGAGATGGAGA 60.830 60.000 0.00 0.00 0.00 3.71
5323 6167 0.831288 AGGGCGATGGAGAGATGGAG 60.831 60.000 0.00 0.00 0.00 3.86
5324 6168 0.829602 GAGGGCGATGGAGAGATGGA 60.830 60.000 0.00 0.00 0.00 3.41
5325 6169 0.831288 AGAGGGCGATGGAGAGATGG 60.831 60.000 0.00 0.00 0.00 3.51
5326 6170 0.317799 CAGAGGGCGATGGAGAGATG 59.682 60.000 0.00 0.00 0.00 2.90
5327 6171 1.470996 GCAGAGGGCGATGGAGAGAT 61.471 60.000 0.00 0.00 0.00 2.75
5328 6172 2.130426 GCAGAGGGCGATGGAGAGA 61.130 63.158 0.00 0.00 0.00 3.10
5329 6173 2.420890 GCAGAGGGCGATGGAGAG 59.579 66.667 0.00 0.00 0.00 3.20
5330 6174 3.157252 GGCAGAGGGCGATGGAGA 61.157 66.667 0.00 0.00 46.16 3.71
5338 6182 3.050275 GTGTCAACGGCAGAGGGC 61.050 66.667 0.00 0.00 43.74 5.19
5339 6183 2.738521 CGTGTCAACGGCAGAGGG 60.739 66.667 0.00 0.00 46.25 4.30
5348 6192 2.860293 CGGTGATGGCGTGTCAAC 59.140 61.111 0.00 0.00 0.00 3.18
5349 6193 3.047280 GCGGTGATGGCGTGTCAA 61.047 61.111 0.00 0.00 0.00 3.18
5356 6200 4.830765 TGGTAGCGCGGTGATGGC 62.831 66.667 23.02 5.63 0.00 4.40
5357 6201 2.108976 ATGGTAGCGCGGTGATGG 59.891 61.111 23.02 0.00 0.00 3.51
5358 6202 2.885676 GCATGGTAGCGCGGTGATG 61.886 63.158 23.02 19.50 0.00 3.07
5359 6203 2.588877 GCATGGTAGCGCGGTGAT 60.589 61.111 23.02 7.28 0.00 3.06
5360 6204 4.830765 GGCATGGTAGCGCGGTGA 62.831 66.667 23.02 4.89 34.64 4.02
5387 6231 4.528039 TAGCCCGTACCTCCCCGG 62.528 72.222 0.00 0.00 43.82 5.73
5388 6232 3.222121 GTAGCCCGTACCTCCCCG 61.222 72.222 0.00 0.00 0.00 5.73
5421 6265 4.487412 GTAGGTGCCGGACGGACG 62.487 72.222 15.99 0.00 37.50 4.79
5422 6266 3.061260 GAGTAGGTGCCGGACGGAC 62.061 68.421 15.99 9.55 37.50 4.79
5423 6267 2.753043 GAGTAGGTGCCGGACGGA 60.753 66.667 15.99 0.00 37.50 4.69
5424 6268 3.834799 GGAGTAGGTGCCGGACGG 61.835 72.222 5.05 6.35 38.57 4.79
5425 6269 4.189188 CGGAGTAGGTGCCGGACG 62.189 72.222 5.05 0.00 43.67 4.79
5430 6274 4.208686 CTCGGCGGAGTAGGTGCC 62.209 72.222 12.89 0.00 45.39 5.01
5431 6275 2.017559 AATCTCGGCGGAGTAGGTGC 62.018 60.000 19.51 0.00 41.26 5.01
5432 6276 0.030908 GAATCTCGGCGGAGTAGGTG 59.969 60.000 19.51 0.00 41.26 4.00
5433 6277 1.445716 CGAATCTCGGCGGAGTAGGT 61.446 60.000 19.51 5.10 41.26 3.08
5434 6278 1.283181 CGAATCTCGGCGGAGTAGG 59.717 63.158 19.51 5.77 41.26 3.18
5435 6279 4.924924 CGAATCTCGGCGGAGTAG 57.075 61.111 19.51 0.00 41.26 2.57
5444 6288 3.884350 TCGCCCGACCGAATCTCG 61.884 66.667 0.00 0.00 40.07 4.04
5445 6289 2.278661 GTCGCCCGACCGAATCTC 60.279 66.667 9.53 0.00 39.17 2.75
5446 6290 4.189188 CGTCGCCCGACCGAATCT 62.189 66.667 14.40 0.00 41.76 2.40
5475 6319 0.728466 GTGTCGAAGGTTCCGAGACG 60.728 60.000 0.00 0.00 39.75 4.18
5476 6320 0.388263 GGTGTCGAAGGTTCCGAGAC 60.388 60.000 0.00 0.00 45.66 3.36
5477 6321 1.859427 CGGTGTCGAAGGTTCCGAGA 61.859 60.000 8.56 0.00 43.22 4.04
5478 6322 1.443872 CGGTGTCGAAGGTTCCGAG 60.444 63.158 8.56 0.00 43.22 4.63
5479 6323 2.646719 CGGTGTCGAAGGTTCCGA 59.353 61.111 8.56 0.00 43.22 4.55
5480 6324 3.110178 GCGGTGTCGAAGGTTCCG 61.110 66.667 9.50 9.50 43.37 4.30
5481 6325 2.741211 GGCGGTGTCGAAGGTTCC 60.741 66.667 0.00 0.00 39.00 3.62
5482 6326 2.741211 GGGCGGTGTCGAAGGTTC 60.741 66.667 0.00 0.00 39.00 3.62
5483 6327 3.530910 CTGGGCGGTGTCGAAGGTT 62.531 63.158 0.00 0.00 39.00 3.50
5484 6328 4.003788 CTGGGCGGTGTCGAAGGT 62.004 66.667 0.00 0.00 39.00 3.50
5485 6329 4.760047 CCTGGGCGGTGTCGAAGG 62.760 72.222 0.00 0.00 39.00 3.46
5486 6330 3.234630 TTCCTGGGCGGTGTCGAAG 62.235 63.158 0.00 0.00 39.00 3.79
5487 6331 3.234630 CTTCCTGGGCGGTGTCGAA 62.235 63.158 0.00 0.00 39.00 3.71
5488 6332 3.691342 CTTCCTGGGCGGTGTCGA 61.691 66.667 0.00 0.00 39.00 4.20
5489 6333 4.760047 CCTTCCTGGGCGGTGTCG 62.760 72.222 0.00 0.00 39.81 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.