Multiple sequence alignment - TraesCS4A01G340500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G340500 chr4A 100.000 5469 0 0 1 5469 621568500 621563032 0.000000e+00 10100.0
1 TraesCS4A01G340500 chr4A 88.273 631 61 10 3149 3768 24765543 24764915 0.000000e+00 743.0
2 TraesCS4A01G340500 chr4A 83.955 536 64 16 1050 1577 24768065 24767544 1.370000e-135 494.0
3 TraesCS4A01G340500 chr4A 88.618 246 28 0 1648 1893 24767410 24767165 3.200000e-77 300.0
4 TraesCS4A01G340500 chr4A 86.911 191 25 0 4292 4482 24764450 24764260 1.190000e-51 215.0
5 TraesCS4A01G340500 chr4A 79.048 315 53 12 4743 5052 621542986 621542680 2.580000e-48 204.0
6 TraesCS4A01G340500 chr4A 79.670 182 23 12 2480 2658 24766102 24765932 9.620000e-23 119.0
7 TraesCS4A01G340500 chr5D 94.095 2337 78 20 2982 5292 547608775 547606473 0.000000e+00 3496.0
8 TraesCS4A01G340500 chr5D 90.515 1592 60 33 630 2177 547611097 547609553 0.000000e+00 2019.0
9 TraesCS4A01G340500 chr5D 92.267 750 26 7 2191 2940 547609495 547608778 0.000000e+00 1035.0
10 TraesCS4A01G340500 chr5D 91.099 191 16 1 5279 5469 547606454 547606265 1.950000e-64 257.0
11 TraesCS4A01G340500 chr5D 89.381 113 12 0 1005 1117 547615891 547615779 5.710000e-30 143.0
12 TraesCS4A01G340500 chr5D 97.059 34 1 0 130 163 110522105 110522138 2.130000e-04 58.4
13 TraesCS4A01G340500 chr5B 91.627 2520 170 23 2208 4719 690907264 690909750 0.000000e+00 3446.0
14 TraesCS4A01G340500 chr5B 89.632 897 54 21 1005 1893 690906323 690907188 0.000000e+00 1105.0
15 TraesCS4A01G340500 chr5B 88.667 450 44 4 4843 5292 690909878 690910320 4.820000e-150 542.0
16 TraesCS4A01G340500 chr5B 80.986 426 28 16 501 878 690905802 690906222 6.930000e-74 289.0
17 TraesCS4A01G340500 chr5B 93.370 181 10 2 5279 5459 690910340 690910518 3.250000e-67 267.0
18 TraesCS4A01G340500 chr5B 93.333 45 2 1 885 929 416331611 416331654 1.270000e-06 65.8
19 TraesCS4A01G340500 chrUn 94.144 2254 75 19 2982 5211 68496684 68494464 0.000000e+00 3378.0
20 TraesCS4A01G340500 chrUn 91.888 1319 49 19 630 1916 68509626 68508334 0.000000e+00 1790.0
21 TraesCS4A01G340500 chrUn 91.582 689 47 6 4607 5292 68494466 68493786 0.000000e+00 941.0
22 TraesCS4A01G340500 chrUn 91.560 391 15 2 2550 2940 68497059 68496687 1.750000e-144 523.0
23 TraesCS4A01G340500 chrUn 93.539 356 9 3 2191 2546 68508216 68507875 8.120000e-143 518.0
24 TraesCS4A01G340500 chrUn 91.623 191 15 1 5279 5469 68493767 68493578 4.200000e-66 263.0
25 TraesCS4A01G340500 chrUn 93.103 58 0 2 2120 2177 68508327 68508274 1.260000e-11 82.4
26 TraesCS4A01G340500 chr4D 89.747 673 63 6 3101 3770 442897547 442898216 0.000000e+00 856.0
27 TraesCS4A01G340500 chr4D 84.321 523 67 9 1050 1570 442895147 442895656 1.060000e-136 497.0
28 TraesCS4A01G340500 chr4D 89.922 258 26 0 1636 1893 442895780 442896037 3.160000e-87 333.0
29 TraesCS4A01G340500 chr4D 90.000 160 16 0 4311 4470 442898703 442898862 2.000000e-49 207.0
30 TraesCS4A01G340500 chr4D 91.489 47 1 3 883 929 229525558 229525601 1.640000e-05 62.1
31 TraesCS4A01G340500 chr4B 88.988 672 65 8 3101 3768 552016607 552017273 0.000000e+00 822.0
32 TraesCS4A01G340500 chr4B 85.193 493 60 8 1078 1569 552014241 552014721 1.370000e-135 494.0
33 TraesCS4A01G340500 chr4B 87.984 258 31 0 1636 1893 552014849 552015106 6.880000e-79 305.0
34 TraesCS4A01G340500 chr4B 86.592 179 24 0 4292 4470 552017694 552017872 1.200000e-46 198.0
35 TraesCS4A01G340500 chr7D 95.699 279 10 1 1358 1636 180440130 180440406 1.080000e-121 448.0
36 TraesCS4A01G340500 chr3A 93.907 279 15 1 1358 1636 703853064 703852788 2.360000e-113 420.0
37 TraesCS4A01G340500 chr3D 93.548 279 15 2 1358 1636 86080900 86080625 3.940000e-111 412.0
38 TraesCS4A01G340500 chr1A 91.837 49 3 1 885 933 94626274 94626321 3.540000e-07 67.6
39 TraesCS4A01G340500 chr5A 100.000 31 0 0 133 163 142663570 142663600 2.130000e-04 58.4
40 TraesCS4A01G340500 chr3B 100.000 28 0 0 137 164 694443130 694443157 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G340500 chr4A 621563032 621568500 5468 True 10100.00 10100 100.000000 1 5469 1 chr4A.!!$R2 5468
1 TraesCS4A01G340500 chr4A 24764260 24768065 3805 True 374.20 743 85.485400 1050 4482 5 chr4A.!!$R3 3432
2 TraesCS4A01G340500 chr5D 547606265 547611097 4832 True 1701.75 3496 91.994000 630 5469 4 chr5D.!!$R2 4839
3 TraesCS4A01G340500 chr5B 690905802 690910518 4716 False 1129.80 3446 88.856400 501 5459 5 chr5B.!!$F2 4958
4 TraesCS4A01G340500 chrUn 68493578 68497059 3481 True 1276.25 3378 92.227250 2550 5469 4 chrUn.!!$R1 2919
5 TraesCS4A01G340500 chrUn 68507875 68509626 1751 True 796.80 1790 92.843333 630 2546 3 chrUn.!!$R2 1916
6 TraesCS4A01G340500 chr4D 442895147 442898862 3715 False 473.25 856 88.497500 1050 4470 4 chr4D.!!$F2 3420
7 TraesCS4A01G340500 chr4B 552014241 552017872 3631 False 454.75 822 87.189250 1078 4470 4 chr4B.!!$F1 3392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 486 0.030235 TCTCGTGTTCGTGTGGACAG 59.970 55.000 0.0 0.0 38.33 3.51 F
486 487 0.030235 CTCGTGTTCGTGTGGACAGA 59.970 55.000 0.0 0.0 38.33 3.41 F
2036 2716 0.041047 CATCGTGGTGCAGTTGTGTG 60.041 55.000 0.0 0.0 0.00 3.82 F
2852 3702 1.067495 AGTTGAGCCACGCTAGTTCTC 60.067 52.381 0.0 0.0 39.88 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2682 1.559682 ACGATGACACCCCTTAATGCT 59.440 47.619 0.00 0.0 0.00 3.79 R
2044 2724 3.009473 ACACATGAACCAGGAGCTAACAT 59.991 43.478 0.00 0.0 0.00 2.71 R
2880 3730 0.320374 CCAGTGGACGGCTGTTAAGA 59.680 55.000 1.68 0.0 32.41 2.10 R
4729 5744 0.031917 AATGATGGGATTGGCCTGCA 60.032 50.000 3.32 0.0 36.66 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.348080 TCTACAATCCAACATCGATAGTTCT 57.652 36.000 0.00 0.00 37.40 3.01
26 27 7.203218 TCTACAATCCAACATCGATAGTTCTG 58.797 38.462 0.00 3.26 37.40 3.02
27 28 5.118990 ACAATCCAACATCGATAGTTCTGG 58.881 41.667 0.00 5.17 37.40 3.86
28 29 5.118990 CAATCCAACATCGATAGTTCTGGT 58.881 41.667 0.00 0.00 37.40 4.00
29 30 4.123497 TCCAACATCGATAGTTCTGGTG 57.877 45.455 0.00 0.00 37.40 4.17
30 31 3.767131 TCCAACATCGATAGTTCTGGTGA 59.233 43.478 0.00 0.00 33.05 4.02
31 32 4.221924 TCCAACATCGATAGTTCTGGTGAA 59.778 41.667 0.00 0.00 33.05 3.18
32 33 4.568359 CCAACATCGATAGTTCTGGTGAAG 59.432 45.833 0.00 0.00 33.05 3.02
33 34 5.171476 CAACATCGATAGTTCTGGTGAAGT 58.829 41.667 0.00 0.00 39.08 3.01
34 35 4.748892 ACATCGATAGTTCTGGTGAAGTG 58.251 43.478 0.00 0.00 36.59 3.16
35 36 4.462834 ACATCGATAGTTCTGGTGAAGTGA 59.537 41.667 0.00 0.00 36.59 3.41
36 37 5.047306 ACATCGATAGTTCTGGTGAAGTGAA 60.047 40.000 0.00 0.00 36.59 3.18
37 38 5.060662 TCGATAGTTCTGGTGAAGTGAAG 57.939 43.478 0.00 0.00 36.59 3.02
38 39 4.082190 TCGATAGTTCTGGTGAAGTGAAGG 60.082 45.833 0.00 0.00 36.59 3.46
39 40 4.082190 CGATAGTTCTGGTGAAGTGAAGGA 60.082 45.833 0.00 0.00 36.59 3.36
40 41 3.477210 AGTTCTGGTGAAGTGAAGGAC 57.523 47.619 0.00 0.00 34.79 3.85
41 42 2.771943 AGTTCTGGTGAAGTGAAGGACA 59.228 45.455 0.00 0.00 34.79 4.02
42 43 3.134458 GTTCTGGTGAAGTGAAGGACAG 58.866 50.000 0.00 0.00 32.15 3.51
43 44 2.677914 TCTGGTGAAGTGAAGGACAGA 58.322 47.619 0.00 0.00 0.00 3.41
44 45 3.242867 TCTGGTGAAGTGAAGGACAGAT 58.757 45.455 0.00 0.00 0.00 2.90
45 46 4.416516 TCTGGTGAAGTGAAGGACAGATA 58.583 43.478 0.00 0.00 0.00 1.98
46 47 4.838423 TCTGGTGAAGTGAAGGACAGATAA 59.162 41.667 0.00 0.00 0.00 1.75
47 48 5.306937 TCTGGTGAAGTGAAGGACAGATAAA 59.693 40.000 0.00 0.00 0.00 1.40
48 49 6.013379 TCTGGTGAAGTGAAGGACAGATAAAT 60.013 38.462 0.00 0.00 0.00 1.40
49 50 7.180229 TCTGGTGAAGTGAAGGACAGATAAATA 59.820 37.037 0.00 0.00 0.00 1.40
50 51 7.861629 TGGTGAAGTGAAGGACAGATAAATAT 58.138 34.615 0.00 0.00 0.00 1.28
51 52 7.987458 TGGTGAAGTGAAGGACAGATAAATATC 59.013 37.037 0.00 0.00 0.00 1.63
52 53 7.987458 GGTGAAGTGAAGGACAGATAAATATCA 59.013 37.037 3.45 0.00 35.17 2.15
53 54 9.553064 GTGAAGTGAAGGACAGATAAATATCAT 57.447 33.333 3.45 0.00 35.17 2.45
148 149 9.814899 TTTAAAATCTTCACATTTTTCTGAGCA 57.185 25.926 0.00 0.00 37.23 4.26
149 150 9.814899 TTAAAATCTTCACATTTTTCTGAGCAA 57.185 25.926 0.00 0.00 37.23 3.91
150 151 8.897872 AAAATCTTCACATTTTTCTGAGCAAT 57.102 26.923 0.00 0.00 33.02 3.56
151 152 8.897872 AAATCTTCACATTTTTCTGAGCAATT 57.102 26.923 0.00 0.00 0.00 2.32
152 153 8.897872 AATCTTCACATTTTTCTGAGCAATTT 57.102 26.923 0.00 0.00 0.00 1.82
153 154 8.897872 ATCTTCACATTTTTCTGAGCAATTTT 57.102 26.923 0.00 0.00 0.00 1.82
154 155 8.356533 TCTTCACATTTTTCTGAGCAATTTTC 57.643 30.769 0.00 0.00 0.00 2.29
155 156 7.980662 TCTTCACATTTTTCTGAGCAATTTTCA 59.019 29.630 0.00 0.00 0.00 2.69
156 157 8.665643 TTCACATTTTTCTGAGCAATTTTCAT 57.334 26.923 0.00 0.00 0.00 2.57
157 158 9.761504 TTCACATTTTTCTGAGCAATTTTCATA 57.238 25.926 0.00 0.00 0.00 2.15
158 159 9.932207 TCACATTTTTCTGAGCAATTTTCATAT 57.068 25.926 0.00 0.00 0.00 1.78
233 234 6.702716 AAAAATACTTGAACCTGACCGAAA 57.297 33.333 0.00 0.00 0.00 3.46
234 235 6.702716 AAAATACTTGAACCTGACCGAAAA 57.297 33.333 0.00 0.00 0.00 2.29
235 236 6.702716 AAATACTTGAACCTGACCGAAAAA 57.297 33.333 0.00 0.00 0.00 1.94
261 262 2.950433 CTGCACAGCCCATTTGTTAAG 58.050 47.619 0.00 0.00 0.00 1.85
262 263 1.000731 TGCACAGCCCATTTGTTAAGC 59.999 47.619 0.00 0.00 0.00 3.09
263 264 1.273327 GCACAGCCCATTTGTTAAGCT 59.727 47.619 0.00 0.00 0.00 3.74
264 265 2.491693 GCACAGCCCATTTGTTAAGCTA 59.508 45.455 0.00 0.00 31.23 3.32
265 266 3.673323 GCACAGCCCATTTGTTAAGCTAC 60.673 47.826 0.00 0.00 31.23 3.58
266 267 3.758554 CACAGCCCATTTGTTAAGCTACT 59.241 43.478 0.00 0.00 31.23 2.57
267 268 4.218417 CACAGCCCATTTGTTAAGCTACTT 59.782 41.667 0.00 0.00 31.23 2.24
268 269 5.414454 CACAGCCCATTTGTTAAGCTACTTA 59.586 40.000 0.00 0.00 31.23 2.24
269 270 5.648092 ACAGCCCATTTGTTAAGCTACTTAG 59.352 40.000 0.00 0.00 31.23 2.18
270 271 5.066505 CAGCCCATTTGTTAAGCTACTTAGG 59.933 44.000 0.00 0.00 31.23 2.69
271 272 4.202020 GCCCATTTGTTAAGCTACTTAGGC 60.202 45.833 0.00 0.00 0.00 3.93
272 273 4.035208 CCCATTTGTTAAGCTACTTAGGCG 59.965 45.833 0.00 0.00 34.52 5.52
273 274 4.873827 CCATTTGTTAAGCTACTTAGGCGA 59.126 41.667 0.00 0.00 34.52 5.54
274 275 5.527582 CCATTTGTTAAGCTACTTAGGCGAT 59.472 40.000 0.00 0.00 34.52 4.58
275 276 6.704493 CCATTTGTTAAGCTACTTAGGCGATA 59.296 38.462 0.00 0.00 34.52 2.92
276 277 7.307219 CCATTTGTTAAGCTACTTAGGCGATAC 60.307 40.741 0.00 0.00 34.52 2.24
277 278 5.840243 TGTTAAGCTACTTAGGCGATACA 57.160 39.130 0.00 0.00 34.52 2.29
278 279 6.211587 TGTTAAGCTACTTAGGCGATACAA 57.788 37.500 0.00 0.00 34.52 2.41
279 280 6.038356 TGTTAAGCTACTTAGGCGATACAAC 58.962 40.000 0.00 0.00 34.52 3.32
280 281 6.127535 TGTTAAGCTACTTAGGCGATACAACT 60.128 38.462 0.00 0.00 34.52 3.16
281 282 4.571372 AGCTACTTAGGCGATACAACTC 57.429 45.455 0.00 0.00 34.52 3.01
282 283 4.208746 AGCTACTTAGGCGATACAACTCT 58.791 43.478 0.00 0.00 34.52 3.24
283 284 5.374921 AGCTACTTAGGCGATACAACTCTA 58.625 41.667 0.00 0.00 34.52 2.43
284 285 6.005198 AGCTACTTAGGCGATACAACTCTAT 58.995 40.000 0.00 0.00 34.52 1.98
285 286 6.149807 AGCTACTTAGGCGATACAACTCTATC 59.850 42.308 0.00 0.00 34.52 2.08
286 287 6.149807 GCTACTTAGGCGATACAACTCTATCT 59.850 42.308 0.00 0.00 0.00 1.98
287 288 6.963083 ACTTAGGCGATACAACTCTATCTT 57.037 37.500 0.00 0.00 0.00 2.40
288 289 9.217278 CTACTTAGGCGATACAACTCTATCTTA 57.783 37.037 0.00 0.00 0.00 2.10
289 290 7.873910 ACTTAGGCGATACAACTCTATCTTAC 58.126 38.462 0.00 0.00 0.00 2.34
290 291 5.359716 AGGCGATACAACTCTATCTTACG 57.640 43.478 0.00 0.00 0.00 3.18
291 292 3.913163 GGCGATACAACTCTATCTTACGC 59.087 47.826 0.00 0.00 41.22 4.42
292 293 3.913163 GCGATACAACTCTATCTTACGCC 59.087 47.826 0.00 0.00 37.13 5.68
293 294 4.320348 GCGATACAACTCTATCTTACGCCT 60.320 45.833 0.00 0.00 37.13 5.52
294 295 5.106791 GCGATACAACTCTATCTTACGCCTA 60.107 44.000 0.00 0.00 37.13 3.93
295 296 6.305639 CGATACAACTCTATCTTACGCCTAC 58.694 44.000 0.00 0.00 0.00 3.18
296 297 6.073385 CGATACAACTCTATCTTACGCCTACA 60.073 42.308 0.00 0.00 0.00 2.74
297 298 5.502153 ACAACTCTATCTTACGCCTACAG 57.498 43.478 0.00 0.00 0.00 2.74
298 299 5.191426 ACAACTCTATCTTACGCCTACAGA 58.809 41.667 0.00 0.00 0.00 3.41
299 300 5.651139 ACAACTCTATCTTACGCCTACAGAA 59.349 40.000 0.00 0.00 0.00 3.02
300 301 6.152323 ACAACTCTATCTTACGCCTACAGAAA 59.848 38.462 0.00 0.00 0.00 2.52
301 302 6.963083 ACTCTATCTTACGCCTACAGAAAT 57.037 37.500 0.00 0.00 0.00 2.17
302 303 7.349412 ACTCTATCTTACGCCTACAGAAATT 57.651 36.000 0.00 0.00 0.00 1.82
303 304 8.461249 ACTCTATCTTACGCCTACAGAAATTA 57.539 34.615 0.00 0.00 0.00 1.40
304 305 8.910944 ACTCTATCTTACGCCTACAGAAATTAA 58.089 33.333 0.00 0.00 0.00 1.40
305 306 9.400638 CTCTATCTTACGCCTACAGAAATTAAG 57.599 37.037 0.00 0.00 0.00 1.85
306 307 9.128404 TCTATCTTACGCCTACAGAAATTAAGA 57.872 33.333 0.00 0.00 0.00 2.10
307 308 9.745880 CTATCTTACGCCTACAGAAATTAAGAA 57.254 33.333 0.00 0.00 30.18 2.52
309 310 8.836268 TCTTACGCCTACAGAAATTAAGAAAA 57.164 30.769 0.00 0.00 0.00 2.29
310 311 9.275398 TCTTACGCCTACAGAAATTAAGAAAAA 57.725 29.630 0.00 0.00 0.00 1.94
333 334 6.892310 AAAAGACACAAAAAGTTGAGATGC 57.108 33.333 0.00 0.00 38.20 3.91
334 335 5.841957 AAGACACAAAAAGTTGAGATGCT 57.158 34.783 0.00 0.00 38.20 3.79
335 336 5.179045 AGACACAAAAAGTTGAGATGCTG 57.821 39.130 0.00 0.00 38.20 4.41
336 337 4.037208 AGACACAAAAAGTTGAGATGCTGG 59.963 41.667 0.00 0.00 38.20 4.85
337 338 3.068590 ACACAAAAAGTTGAGATGCTGGG 59.931 43.478 0.00 0.00 38.20 4.45
338 339 3.318839 CACAAAAAGTTGAGATGCTGGGA 59.681 43.478 0.00 0.00 38.20 4.37
339 340 4.021719 CACAAAAAGTTGAGATGCTGGGAT 60.022 41.667 0.00 0.00 38.20 3.85
340 341 4.590222 ACAAAAAGTTGAGATGCTGGGATT 59.410 37.500 0.00 0.00 38.20 3.01
341 342 5.166398 CAAAAAGTTGAGATGCTGGGATTC 58.834 41.667 0.00 0.00 36.83 2.52
342 343 3.726557 AAGTTGAGATGCTGGGATTCA 57.273 42.857 0.00 0.00 0.00 2.57
343 344 3.726557 AGTTGAGATGCTGGGATTCAA 57.273 42.857 0.00 0.00 0.00 2.69
344 345 4.038271 AGTTGAGATGCTGGGATTCAAA 57.962 40.909 0.00 0.00 30.43 2.69
345 346 3.760684 AGTTGAGATGCTGGGATTCAAAC 59.239 43.478 0.00 0.00 30.43 2.93
346 347 2.726821 TGAGATGCTGGGATTCAAACC 58.273 47.619 0.00 0.00 0.00 3.27
347 348 2.027385 GAGATGCTGGGATTCAAACCC 58.973 52.381 0.00 0.00 46.87 4.11
355 356 3.000684 GGGATTCAAACCCAGGACTAC 57.999 52.381 0.00 0.00 46.05 2.73
356 357 2.356844 GGGATTCAAACCCAGGACTACC 60.357 54.545 0.00 0.00 46.05 3.18
367 368 2.861147 AGGACTACCTGCTGGAAAAC 57.139 50.000 17.64 5.06 45.92 2.43
368 369 2.339769 AGGACTACCTGCTGGAAAACT 58.660 47.619 17.64 4.89 45.92 2.66
369 370 2.303311 AGGACTACCTGCTGGAAAACTC 59.697 50.000 17.64 3.28 45.92 3.01
370 371 2.303311 GGACTACCTGCTGGAAAACTCT 59.697 50.000 17.64 0.00 37.04 3.24
371 372 3.330267 GACTACCTGCTGGAAAACTCTG 58.670 50.000 17.64 0.03 37.04 3.35
372 373 2.039084 ACTACCTGCTGGAAAACTCTGG 59.961 50.000 17.64 0.00 37.04 3.86
373 374 1.140312 ACCTGCTGGAAAACTCTGGA 58.860 50.000 17.64 0.00 37.04 3.86
374 375 1.707427 ACCTGCTGGAAAACTCTGGAT 59.293 47.619 17.64 0.00 37.04 3.41
375 376 2.290577 ACCTGCTGGAAAACTCTGGATC 60.291 50.000 17.64 0.00 37.04 3.36
376 377 2.026449 CCTGCTGGAAAACTCTGGATCT 60.026 50.000 2.92 0.00 34.57 2.75
377 378 3.198635 CCTGCTGGAAAACTCTGGATCTA 59.801 47.826 2.92 0.00 34.57 1.98
378 379 4.323792 CCTGCTGGAAAACTCTGGATCTAA 60.324 45.833 2.92 0.00 34.57 2.10
379 380 4.579869 TGCTGGAAAACTCTGGATCTAAC 58.420 43.478 0.00 0.00 0.00 2.34
380 381 4.287067 TGCTGGAAAACTCTGGATCTAACT 59.713 41.667 0.00 0.00 0.00 2.24
381 382 5.483937 TGCTGGAAAACTCTGGATCTAACTA 59.516 40.000 0.00 0.00 0.00 2.24
382 383 6.045955 GCTGGAAAACTCTGGATCTAACTAG 58.954 44.000 0.00 0.00 0.00 2.57
383 384 6.351456 GCTGGAAAACTCTGGATCTAACTAGT 60.351 42.308 0.00 0.00 0.00 2.57
384 385 6.936279 TGGAAAACTCTGGATCTAACTAGTG 58.064 40.000 0.00 0.00 0.00 2.74
385 386 6.070767 TGGAAAACTCTGGATCTAACTAGTGG 60.071 42.308 0.00 0.00 0.00 4.00
386 387 5.941555 AAACTCTGGATCTAACTAGTGGG 57.058 43.478 0.00 0.00 0.00 4.61
387 388 4.883021 ACTCTGGATCTAACTAGTGGGA 57.117 45.455 0.00 0.00 0.00 4.37
388 389 5.411103 ACTCTGGATCTAACTAGTGGGAT 57.589 43.478 0.00 3.23 0.00 3.85
389 390 5.782925 ACTCTGGATCTAACTAGTGGGATT 58.217 41.667 0.00 0.00 0.00 3.01
390 391 5.600484 ACTCTGGATCTAACTAGTGGGATTG 59.400 44.000 0.00 0.00 0.00 2.67
391 392 4.345257 TCTGGATCTAACTAGTGGGATTGC 59.655 45.833 0.00 0.00 0.00 3.56
392 393 3.391296 TGGATCTAACTAGTGGGATTGCC 59.609 47.826 0.00 3.14 0.00 4.52
393 394 3.648545 GGATCTAACTAGTGGGATTGCCT 59.351 47.826 0.00 0.00 0.00 4.75
394 395 4.503991 GGATCTAACTAGTGGGATTGCCTG 60.504 50.000 0.00 0.00 0.00 4.85
395 396 3.450904 TCTAACTAGTGGGATTGCCTGT 58.549 45.455 0.00 0.00 0.00 4.00
396 397 2.496899 AACTAGTGGGATTGCCTGTG 57.503 50.000 0.00 0.00 0.00 3.66
397 398 0.035056 ACTAGTGGGATTGCCTGTGC 60.035 55.000 0.00 0.00 38.26 4.57
410 411 4.628963 TGCCTGTGCAGATGTGATATAT 57.371 40.909 0.02 0.00 44.23 0.86
411 412 4.320870 TGCCTGTGCAGATGTGATATATG 58.679 43.478 0.02 0.00 44.23 1.78
412 413 3.688185 GCCTGTGCAGATGTGATATATGG 59.312 47.826 0.02 0.00 37.47 2.74
413 414 4.259356 CCTGTGCAGATGTGATATATGGG 58.741 47.826 0.02 0.00 0.00 4.00
414 415 3.678289 TGTGCAGATGTGATATATGGGC 58.322 45.455 0.00 0.00 0.00 5.36
415 416 2.674852 GTGCAGATGTGATATATGGGCG 59.325 50.000 0.00 0.00 0.00 6.13
416 417 2.566724 TGCAGATGTGATATATGGGCGA 59.433 45.455 0.00 0.00 0.00 5.54
417 418 2.932614 GCAGATGTGATATATGGGCGAC 59.067 50.000 0.00 0.00 0.00 5.19
429 430 4.937431 GGCGACCCATAGGCAGGC 62.937 72.222 0.00 0.00 36.11 4.85
430 431 4.937431 GCGACCCATAGGCAGGCC 62.937 72.222 0.97 0.97 36.11 5.19
431 432 4.256180 CGACCCATAGGCAGGCCC 62.256 72.222 6.70 0.00 36.11 5.80
432 433 4.256180 GACCCATAGGCAGGCCCG 62.256 72.222 6.70 0.00 39.21 6.13
433 434 4.815973 ACCCATAGGCAGGCCCGA 62.816 66.667 6.70 0.00 39.21 5.14
434 435 3.488569 CCCATAGGCAGGCCCGAA 61.489 66.667 6.70 0.00 39.21 4.30
435 436 2.111878 CCATAGGCAGGCCCGAAG 59.888 66.667 6.70 0.00 39.21 3.79
436 437 2.592861 CATAGGCAGGCCCGAAGC 60.593 66.667 6.70 0.00 39.21 3.86
437 438 3.089874 ATAGGCAGGCCCGAAGCA 61.090 61.111 6.70 0.00 46.50 3.91
438 439 3.112205 ATAGGCAGGCCCGAAGCAG 62.112 63.158 6.70 0.00 46.50 4.24
441 442 4.704833 GCAGGCCCGAAGCAGACA 62.705 66.667 0.00 0.00 46.50 3.41
442 443 2.743928 CAGGCCCGAAGCAGACAC 60.744 66.667 0.00 0.00 46.50 3.67
443 444 4.021925 AGGCCCGAAGCAGACACC 62.022 66.667 0.00 0.00 46.50 4.16
444 445 4.329545 GGCCCGAAGCAGACACCA 62.330 66.667 0.00 0.00 46.50 4.17
445 446 2.281484 GCCCGAAGCAGACACCAA 60.281 61.111 0.00 0.00 42.97 3.67
446 447 1.896660 GCCCGAAGCAGACACCAAA 60.897 57.895 0.00 0.00 42.97 3.28
447 448 1.244019 GCCCGAAGCAGACACCAAAT 61.244 55.000 0.00 0.00 42.97 2.32
448 449 0.523072 CCCGAAGCAGACACCAAATG 59.477 55.000 0.00 0.00 0.00 2.32
449 450 0.523072 CCGAAGCAGACACCAAATGG 59.477 55.000 0.00 0.00 42.17 3.16
450 451 1.522668 CGAAGCAGACACCAAATGGA 58.477 50.000 6.42 0.00 38.94 3.41
451 452 1.197721 CGAAGCAGACACCAAATGGAC 59.802 52.381 6.42 0.00 38.94 4.02
452 453 1.197721 GAAGCAGACACCAAATGGACG 59.802 52.381 6.42 0.00 38.94 4.79
453 454 1.210155 GCAGACACCAAATGGACGC 59.790 57.895 6.42 0.00 38.94 5.19
454 455 1.497278 CAGACACCAAATGGACGCG 59.503 57.895 3.53 3.53 38.94 6.01
455 456 2.175811 GACACCAAATGGACGCGC 59.824 61.111 5.73 0.00 38.94 6.86
456 457 3.645157 GACACCAAATGGACGCGCG 62.645 63.158 30.96 30.96 38.94 6.86
457 458 4.459331 CACCAAATGGACGCGCGG 62.459 66.667 35.22 15.89 38.94 6.46
473 474 4.719369 GGCGCTTCCGTCTCGTGT 62.719 66.667 7.64 0.00 35.86 4.49
474 475 2.733593 GCGCTTCCGTCTCGTGTT 60.734 61.111 0.00 0.00 36.67 3.32
475 476 2.717809 GCGCTTCCGTCTCGTGTTC 61.718 63.158 0.00 0.00 36.67 3.18
476 477 2.426183 CGCTTCCGTCTCGTGTTCG 61.426 63.158 0.00 0.00 38.55 3.95
477 478 1.371389 GCTTCCGTCTCGTGTTCGT 60.371 57.895 0.00 0.00 38.33 3.85
478 479 1.606350 GCTTCCGTCTCGTGTTCGTG 61.606 60.000 0.00 0.00 38.33 4.35
479 480 0.317603 CTTCCGTCTCGTGTTCGTGT 60.318 55.000 0.00 0.00 38.33 4.49
480 481 0.593008 TTCCGTCTCGTGTTCGTGTG 60.593 55.000 0.00 0.00 38.33 3.82
481 482 2.014554 CCGTCTCGTGTTCGTGTGG 61.015 63.158 0.00 0.00 38.33 4.17
482 483 1.009335 CGTCTCGTGTTCGTGTGGA 60.009 57.895 0.00 0.00 38.33 4.02
483 484 1.266786 CGTCTCGTGTTCGTGTGGAC 61.267 60.000 0.00 0.00 38.33 4.02
484 485 0.248743 GTCTCGTGTTCGTGTGGACA 60.249 55.000 0.00 0.00 38.33 4.02
485 486 0.030235 TCTCGTGTTCGTGTGGACAG 59.970 55.000 0.00 0.00 38.33 3.51
486 487 0.030235 CTCGTGTTCGTGTGGACAGA 59.970 55.000 0.00 0.00 38.33 3.41
487 488 0.456628 TCGTGTTCGTGTGGACAGAA 59.543 50.000 0.00 0.00 38.33 3.02
488 489 1.135053 TCGTGTTCGTGTGGACAGAAA 60.135 47.619 0.00 0.00 38.33 2.52
489 490 1.864711 CGTGTTCGTGTGGACAGAAAT 59.135 47.619 0.00 0.00 0.00 2.17
490 491 2.096909 CGTGTTCGTGTGGACAGAAATC 60.097 50.000 0.00 0.00 0.00 2.17
491 492 2.869801 GTGTTCGTGTGGACAGAAATCA 59.130 45.455 0.00 0.00 0.00 2.57
492 493 2.869801 TGTTCGTGTGGACAGAAATCAC 59.130 45.455 0.00 0.00 0.00 3.06
494 495 0.163788 CGTGTGGACAGAAATCACGC 59.836 55.000 0.00 0.00 43.39 5.34
495 496 1.225855 GTGTGGACAGAAATCACGCA 58.774 50.000 0.00 0.00 40.42 5.24
496 497 1.806542 GTGTGGACAGAAATCACGCAT 59.193 47.619 0.00 0.00 40.42 4.73
497 498 3.000041 GTGTGGACAGAAATCACGCATA 59.000 45.455 0.00 0.00 40.42 3.14
498 499 3.435327 GTGTGGACAGAAATCACGCATAA 59.565 43.478 0.00 0.00 40.42 1.90
499 500 4.068599 TGTGGACAGAAATCACGCATAAA 58.931 39.130 0.00 0.00 34.43 1.40
500 501 4.699735 TGTGGACAGAAATCACGCATAAAT 59.300 37.500 0.00 0.00 34.43 1.40
501 502 5.182950 TGTGGACAGAAATCACGCATAAATT 59.817 36.000 0.00 0.00 34.43 1.82
502 503 6.092748 GTGGACAGAAATCACGCATAAATTT 58.907 36.000 0.00 0.00 0.00 1.82
503 504 6.033831 GTGGACAGAAATCACGCATAAATTTG 59.966 38.462 0.00 0.00 0.00 2.32
504 505 5.516339 GGACAGAAATCACGCATAAATTTGG 59.484 40.000 0.00 0.00 0.00 3.28
505 506 5.410067 ACAGAAATCACGCATAAATTTGGG 58.590 37.500 0.00 0.00 35.79 4.12
506 507 4.268405 CAGAAATCACGCATAAATTTGGGC 59.732 41.667 0.00 3.45 33.14 5.36
507 508 2.888834 ATCACGCATAAATTTGGGCC 57.111 45.000 0.00 0.00 33.14 5.80
508 509 1.846007 TCACGCATAAATTTGGGCCT 58.154 45.000 4.53 0.00 33.14 5.19
509 510 1.476085 TCACGCATAAATTTGGGCCTG 59.524 47.619 4.53 5.01 33.14 4.85
510 511 1.476085 CACGCATAAATTTGGGCCTGA 59.524 47.619 4.53 0.00 33.14 3.86
511 512 2.094286 CACGCATAAATTTGGGCCTGAA 60.094 45.455 4.53 0.00 33.14 3.02
513 514 3.197549 ACGCATAAATTTGGGCCTGAAAT 59.802 39.130 4.53 5.02 33.14 2.17
537 538 2.740121 TCCACATGGACACGAGTCA 58.260 52.632 14.98 1.84 46.80 3.41
538 539 1.044611 TCCACATGGACACGAGTCAA 58.955 50.000 14.98 3.66 46.80 3.18
539 540 1.414550 TCCACATGGACACGAGTCAAA 59.585 47.619 14.98 2.86 46.80 2.69
540 541 1.531149 CCACATGGACACGAGTCAAAC 59.469 52.381 14.98 0.00 46.80 2.93
542 543 2.032894 CACATGGACACGAGTCAAACAC 60.033 50.000 14.98 0.00 46.80 3.32
543 544 2.209273 CATGGACACGAGTCAAACACA 58.791 47.619 14.98 3.56 46.80 3.72
544 545 2.388310 TGGACACGAGTCAAACACAA 57.612 45.000 14.98 0.00 46.80 3.33
545 546 2.912771 TGGACACGAGTCAAACACAAT 58.087 42.857 14.98 0.00 46.80 2.71
546 547 3.275143 TGGACACGAGTCAAACACAATT 58.725 40.909 14.98 0.00 46.80 2.32
547 548 3.692101 TGGACACGAGTCAAACACAATTT 59.308 39.130 14.98 0.00 46.80 1.82
548 549 4.035017 GGACACGAGTCAAACACAATTTG 58.965 43.478 14.98 0.00 46.80 2.32
549 550 4.027572 ACACGAGTCAAACACAATTTGG 57.972 40.909 0.78 0.00 0.00 3.28
550 551 3.181491 ACACGAGTCAAACACAATTTGGG 60.181 43.478 0.00 0.00 0.00 4.12
551 552 3.020984 ACGAGTCAAACACAATTTGGGT 58.979 40.909 0.00 0.00 33.89 4.51
552 553 8.761811 GACACGAGTCAAACACAATTTGGGTT 62.762 42.308 11.24 11.24 44.34 4.11
559 560 1.127701 CACAATTTGGGTTTGCGTCG 58.872 50.000 0.78 0.00 0.00 5.12
579 580 2.644992 CTGTTGGGCCAGCGTTTC 59.355 61.111 15.95 0.59 0.00 2.78
593 594 1.877165 GTTTCCGTCCGCTCCGATC 60.877 63.158 0.00 0.00 0.00 3.69
594 595 2.344981 TTTCCGTCCGCTCCGATCA 61.345 57.895 0.00 0.00 0.00 2.92
595 596 2.552585 TTTCCGTCCGCTCCGATCAC 62.553 60.000 0.00 0.00 0.00 3.06
596 597 4.907034 CCGTCCGCTCCGATCACG 62.907 72.222 0.00 0.00 39.43 4.35
609 619 1.656594 CGATCACGCGTGAACCAAATA 59.343 47.619 41.74 20.11 43.58 1.40
658 669 4.330074 CACAGTGTTAATCCTCGATGTTCC 59.670 45.833 0.00 0.00 0.00 3.62
746 772 7.805071 CACTTGCTTGATAAACTTTCCTAAGTG 59.195 37.037 0.00 0.00 43.74 3.16
756 782 4.826556 ACTTTCCTAAGTGAGTGCAGATC 58.173 43.478 0.00 0.00 42.91 2.75
886 936 8.117813 TCACACAAACTCTCGGCATATATATA 57.882 34.615 0.00 0.00 0.00 0.86
887 937 8.749354 TCACACAAACTCTCGGCATATATATAT 58.251 33.333 0.00 0.00 0.00 0.86
929 979 5.108385 ACGAACACCATCAAACAAAGATC 57.892 39.130 0.00 0.00 0.00 2.75
932 982 3.149196 ACACCATCAAACAAAGATCGCT 58.851 40.909 0.00 0.00 0.00 4.93
969 1028 1.284408 GCAATCGCAACCGGAAACA 59.716 52.632 9.46 0.00 38.36 2.83
970 1029 0.318275 GCAATCGCAACCGGAAACAA 60.318 50.000 9.46 0.00 38.36 2.83
971 1030 1.404477 CAATCGCAACCGGAAACAAC 58.596 50.000 9.46 0.00 34.56 3.32
993 1052 5.657474 ACGCTATCGATTTTTCTTGGTCTA 58.343 37.500 1.71 0.00 39.41 2.59
997 1056 8.761497 CGCTATCGATTTTTCTTGGTCTATTTA 58.239 33.333 1.71 0.00 38.10 1.40
1066 1143 3.822192 CCATCGAGACGGCGGTGA 61.822 66.667 13.24 3.23 44.79 4.02
1084 1161 3.492829 GGTGAACGAGAACCAGAAGAAGT 60.493 47.826 0.00 0.00 36.41 3.01
1203 1289 2.171209 TAGGCGCTTCTGCTCTGCAA 62.171 55.000 7.64 0.00 38.41 4.08
1205 1291 1.505353 GCGCTTCTGCTCTGCAATT 59.495 52.632 0.00 0.00 38.41 2.32
1207 1293 1.085091 CGCTTCTGCTCTGCAATTCT 58.915 50.000 0.00 0.00 38.41 2.40
1208 1294 1.202043 CGCTTCTGCTCTGCAATTCTG 60.202 52.381 0.00 0.00 38.41 3.02
1209 1295 1.467713 GCTTCTGCTCTGCAATTCTGC 60.468 52.381 0.00 0.00 41.76 4.26
1210 1296 4.023561 GCTTCTGCTCTGCAATTCTGCA 62.024 50.000 0.00 0.00 45.53 4.41
1223 1309 3.803186 ATTCTGCATTGCCCTAGCTAT 57.197 42.857 6.12 0.00 40.80 2.97
1248 1340 1.078759 CCAGTCTCGATGTCGGTTGC 61.079 60.000 2.25 0.00 40.29 4.17
1428 1529 2.524394 ATCCTCACGCCGCCCTAT 60.524 61.111 0.00 0.00 0.00 2.57
1429 1530 2.493907 GATCCTCACGCCGCCCTATC 62.494 65.000 0.00 0.00 0.00 2.08
1577 1678 2.899505 GCAGCAGGTCCCTCTCTC 59.100 66.667 0.00 0.00 0.00 3.20
1578 1679 1.986757 GCAGCAGGTCCCTCTCTCA 60.987 63.158 0.00 0.00 0.00 3.27
1579 1680 1.336632 GCAGCAGGTCCCTCTCTCAT 61.337 60.000 0.00 0.00 0.00 2.90
1580 1681 0.464870 CAGCAGGTCCCTCTCTCATG 59.535 60.000 0.00 0.00 0.00 3.07
1610 1752 8.564574 CATCTAGTTACTGAATACTCCTCTGAC 58.435 40.741 0.00 0.00 0.00 3.51
1626 1796 4.081198 CCTCTGACTGCTATTTCTCACCTT 60.081 45.833 0.00 0.00 0.00 3.50
1982 2661 2.287103 GTCCGTGAACCTGTGAAGTTTC 59.713 50.000 0.00 0.00 0.00 2.78
2002 2682 8.937207 AGTTTCTACTTCTAGTTTCCTAGTGA 57.063 34.615 0.00 0.00 41.31 3.41
2036 2716 0.041047 CATCGTGGTGCAGTTGTGTG 60.041 55.000 0.00 0.00 0.00 3.82
2039 2719 0.041047 CGTGGTGCAGTTGTGTGATG 60.041 55.000 0.00 0.00 0.00 3.07
2044 2724 3.138304 GGTGCAGTTGTGTGATGTTAGA 58.862 45.455 0.00 0.00 0.00 2.10
2065 2775 3.057969 TGTTAGCTCCTGGTTCATGTG 57.942 47.619 0.00 0.00 0.00 3.21
2133 2845 4.940463 TCCAACGGCATAGATTACTGTAC 58.060 43.478 0.00 0.00 0.00 2.90
2446 3214 4.525874 TGTTATGGCAATCATGTGTTCCAA 59.474 37.500 0.00 0.00 37.30 3.53
2453 3221 8.665471 ATGGCAATCATGTGTTCCAAAGAACTA 61.665 37.037 7.40 0.00 42.64 2.24
2546 3324 2.878406 GCTGCTTGTTGAACTTCTACCA 59.122 45.455 0.00 0.00 0.00 3.25
2548 3326 2.878406 TGCTTGTTGAACTTCTACCAGC 59.122 45.455 17.17 17.17 39.80 4.85
2602 3441 2.323599 TGGGTCATTTGGTGATGCAAA 58.676 42.857 0.00 0.00 39.48 3.68
2741 3590 7.331687 GGCATCATTGTTGTTGCTAGTTTAATT 59.668 33.333 8.44 0.00 44.46 1.40
2742 3591 9.352784 GCATCATTGTTGTTGCTAGTTTAATTA 57.647 29.630 0.00 0.00 42.66 1.40
2751 3600 8.470040 TGTTGCTAGTTTAATTAGGACTTACG 57.530 34.615 8.36 0.00 0.00 3.18
2847 3697 3.128938 ACTTAGTAGTTGAGCCACGCTAG 59.871 47.826 0.00 0.00 39.88 3.42
2852 3702 1.067495 AGTTGAGCCACGCTAGTTCTC 60.067 52.381 0.00 0.00 39.88 2.87
2874 3724 9.607333 TTCTCAAGGGTTATCATCTAGTCATAT 57.393 33.333 0.00 0.00 0.00 1.78
2953 3805 4.637483 ATATGGTGTTGATTTGCTTCGG 57.363 40.909 0.00 0.00 0.00 4.30
2955 3807 1.336440 TGGTGTTGATTTGCTTCGGTG 59.664 47.619 0.00 0.00 0.00 4.94
2958 3810 3.042887 GTGTTGATTTGCTTCGGTGTTC 58.957 45.455 0.00 0.00 0.00 3.18
2974 3827 2.094130 GTGTTCCACTAGCCTAGTCCAC 60.094 54.545 0.17 3.51 36.76 4.02
3049 3902 7.067008 GGATGTGCTATTCAAACTAGCCTTTTA 59.933 37.037 0.00 0.00 40.72 1.52
3064 3917 6.901081 AGCCTTTTATTATATGGTGCCTTC 57.099 37.500 0.00 0.00 0.00 3.46
3417 4302 8.703604 TGTGAGAACAAAGATAAGTACTATGC 57.296 34.615 0.00 0.00 0.00 3.14
3560 4445 1.089920 CAACTGATCTTCTTGCCCGG 58.910 55.000 0.00 0.00 0.00 5.73
3598 4497 4.097437 ACAGGTACTATGTGTGTCATACCG 59.903 45.833 3.86 0.00 37.61 4.02
3611 4510 6.312918 GTGTGTCATACCGATTTTACTCACAT 59.687 38.462 0.00 0.00 35.23 3.21
3921 4849 2.367894 TGACAAATGCAAATGGCTTGGA 59.632 40.909 9.13 0.00 45.15 3.53
4012 4952 4.645535 CCTGAGATTGAACTTCTCACCAA 58.354 43.478 0.00 0.00 43.49 3.67
4049 4989 9.202273 GTAATGTTGTGAATAAGATTTGGCAAA 57.798 29.630 16.01 16.01 0.00 3.68
4051 4991 8.851541 ATGTTGTGAATAAGATTTGGCAAAAT 57.148 26.923 17.70 0.00 38.74 1.82
4281 5272 9.553064 TTGTCCAATTACAATGCTTATTTTGTT 57.447 25.926 0.00 0.00 34.50 2.83
4545 5536 5.767665 ACTTATATGATTATGTTGCCGCCAA 59.232 36.000 0.00 0.00 0.00 4.52
4584 5575 2.647299 TGTACCAAACTGGATGGGTCAT 59.353 45.455 0.00 0.00 40.96 3.06
4585 5576 2.999185 ACCAAACTGGATGGGTCATT 57.001 45.000 0.00 0.00 40.96 2.57
4586 5577 2.528564 ACCAAACTGGATGGGTCATTG 58.471 47.619 0.00 0.00 40.96 2.82
4587 5578 2.158325 ACCAAACTGGATGGGTCATTGT 60.158 45.455 0.00 0.00 40.96 2.71
4588 5579 2.899256 CCAAACTGGATGGGTCATTGTT 59.101 45.455 0.00 0.00 40.96 2.83
4589 5580 3.324556 CCAAACTGGATGGGTCATTGTTT 59.675 43.478 0.00 0.00 40.96 2.83
4590 5581 4.309099 CAAACTGGATGGGTCATTGTTTG 58.691 43.478 14.11 14.11 35.71 2.93
4591 5582 2.528564 ACTGGATGGGTCATTGTTTGG 58.471 47.619 0.00 0.00 0.00 3.28
4592 5583 2.109834 ACTGGATGGGTCATTGTTTGGA 59.890 45.455 0.00 0.00 0.00 3.53
4593 5584 3.245730 ACTGGATGGGTCATTGTTTGGAT 60.246 43.478 0.00 0.00 0.00 3.41
4594 5585 3.770933 CTGGATGGGTCATTGTTTGGATT 59.229 43.478 0.00 0.00 0.00 3.01
4595 5586 4.940483 TGGATGGGTCATTGTTTGGATTA 58.060 39.130 0.00 0.00 0.00 1.75
4596 5587 5.336945 TGGATGGGTCATTGTTTGGATTAA 58.663 37.500 0.00 0.00 0.00 1.40
4597 5588 5.421693 TGGATGGGTCATTGTTTGGATTAAG 59.578 40.000 0.00 0.00 0.00 1.85
4598 5589 5.422012 GGATGGGTCATTGTTTGGATTAAGT 59.578 40.000 0.00 0.00 0.00 2.24
4599 5590 6.070824 GGATGGGTCATTGTTTGGATTAAGTT 60.071 38.462 0.00 0.00 0.00 2.66
4600 5591 6.095432 TGGGTCATTGTTTGGATTAAGTTG 57.905 37.500 0.00 0.00 0.00 3.16
4601 5592 5.600484 TGGGTCATTGTTTGGATTAAGTTGT 59.400 36.000 0.00 0.00 0.00 3.32
4602 5593 6.778069 TGGGTCATTGTTTGGATTAAGTTGTA 59.222 34.615 0.00 0.00 0.00 2.41
4603 5594 7.287927 TGGGTCATTGTTTGGATTAAGTTGTAA 59.712 33.333 0.00 0.00 0.00 2.41
4604 5595 7.597369 GGGTCATTGTTTGGATTAAGTTGTAAC 59.403 37.037 0.00 0.00 0.00 2.50
4605 5596 8.357402 GGTCATTGTTTGGATTAAGTTGTAACT 58.643 33.333 0.00 0.00 42.04 2.24
4719 5734 5.113446 TCGGATTCAAGTCCTAGACTAGT 57.887 43.478 8.68 0.00 42.59 2.57
4722 5737 6.056884 CGGATTCAAGTCCTAGACTAGTACT 58.943 44.000 8.68 5.36 42.59 2.73
4729 5744 4.018233 AGTCCTAGACTAGTACTGGTGCTT 60.018 45.833 17.50 4.89 41.51 3.91
4732 5747 2.248248 AGACTAGTACTGGTGCTTGCA 58.752 47.619 17.50 0.00 0.00 4.08
4742 5757 2.681064 TGCTTGCAGGCCAATCCC 60.681 61.111 19.11 0.00 34.51 3.85
4743 5758 2.681064 GCTTGCAGGCCAATCCCA 60.681 61.111 10.18 0.00 34.51 4.37
4777 5792 0.945265 CCACCTGCCACATTTTTGCG 60.945 55.000 0.00 0.00 0.00 4.85
4783 5798 0.654683 GCCACATTTTTGCGCAACAA 59.345 45.000 24.99 23.66 36.13 2.83
4792 5807 4.449870 TTTTGCGCAACAATTTGATGAC 57.550 36.364 24.99 2.76 38.31 3.06
4851 5866 5.071788 TCCACAAGGAACTATCACTTTCTGT 59.928 40.000 0.00 0.00 42.23 3.41
4898 5957 5.676552 TGTGTATTTGACTGTTGGTAGTGT 58.323 37.500 0.00 0.00 0.00 3.55
4907 5966 5.650266 TGACTGTTGGTAGTGTGTTGAAAAT 59.350 36.000 0.00 0.00 0.00 1.82
5074 6735 1.803943 CTCGGAAGTGCTAGCGTCT 59.196 57.895 10.77 8.31 0.00 4.18
5091 6754 4.574271 TGCTGCTGCAGGCTGTGT 62.574 61.111 29.05 0.00 45.31 3.72
5109 6772 1.272760 TGTTATGGACGCCCCCAAATT 60.273 47.619 0.00 0.00 40.04 1.82
5116 6779 0.402504 ACGCCCCCAAATTGACTACA 59.597 50.000 0.00 0.00 0.00 2.74
5123 6786 5.128663 GCCCCCAAATTGACTACATATTTGT 59.871 40.000 0.00 0.00 39.98 2.83
5178 6841 0.249573 TGGACGTTTGAGGAACCGTC 60.250 55.000 0.00 0.00 39.17 4.79
5203 6866 0.178975 TGGCAAAAATGGTCCGGACT 60.179 50.000 32.52 12.83 0.00 3.85
5232 6895 2.450160 CTGACTTTTTGTGTGCGGTTC 58.550 47.619 0.00 0.00 0.00 3.62
5233 6896 1.202087 TGACTTTTTGTGTGCGGTTCG 60.202 47.619 0.00 0.00 0.00 3.95
5295 6990 7.069331 ACCACTACCAAATTTTGAGTTTGATCA 59.931 33.333 10.72 0.00 38.51 2.92
5310 7005 8.122330 TGAGTTTGATCATAAATGTTCATACGC 58.878 33.333 14.98 14.98 40.34 4.42
5339 7034 6.988522 TGAATGGATCCTGATGCAATATTTG 58.011 36.000 14.23 0.00 42.36 2.32
5466 7161 4.963318 TGCATAACAAAATTTCCCCACA 57.037 36.364 0.00 0.00 0.00 4.17
5467 7162 4.892433 TGCATAACAAAATTTCCCCACAG 58.108 39.130 0.00 0.00 0.00 3.66
5468 7163 4.346418 TGCATAACAAAATTTCCCCACAGT 59.654 37.500 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.869937 CAGAACTATCGATGTTGGATTGTAGAT 59.130 37.037 8.54 0.00 31.31 1.98
2 3 6.422100 CCAGAACTATCGATGTTGGATTGTAG 59.578 42.308 8.54 0.00 31.31 2.74
3 4 6.127168 ACCAGAACTATCGATGTTGGATTGTA 60.127 38.462 8.54 0.00 31.31 2.41
4 5 5.118990 CCAGAACTATCGATGTTGGATTGT 58.881 41.667 8.54 0.00 32.55 2.71
5 6 5.007039 CACCAGAACTATCGATGTTGGATTG 59.993 44.000 8.54 6.28 0.00 2.67
6 7 5.104941 TCACCAGAACTATCGATGTTGGATT 60.105 40.000 8.54 0.00 0.00 3.01
7 8 4.405680 TCACCAGAACTATCGATGTTGGAT 59.594 41.667 8.54 0.00 0.00 3.41
9 10 4.123497 TCACCAGAACTATCGATGTTGG 57.877 45.455 8.54 11.52 0.00 3.77
10 11 5.062683 CACTTCACCAGAACTATCGATGTTG 59.937 44.000 8.54 0.68 0.00 3.33
11 12 5.047306 TCACTTCACCAGAACTATCGATGTT 60.047 40.000 8.54 10.31 0.00 2.71
12 13 4.462834 TCACTTCACCAGAACTATCGATGT 59.537 41.667 8.54 1.21 0.00 3.06
13 14 4.998788 TCACTTCACCAGAACTATCGATG 58.001 43.478 8.54 0.52 0.00 3.84
14 15 5.394663 CCTTCACTTCACCAGAACTATCGAT 60.395 44.000 2.16 2.16 0.00 3.59
15 16 4.082190 CCTTCACTTCACCAGAACTATCGA 60.082 45.833 0.00 0.00 0.00 3.59
16 17 4.082190 TCCTTCACTTCACCAGAACTATCG 60.082 45.833 0.00 0.00 0.00 2.92
17 18 5.172205 GTCCTTCACTTCACCAGAACTATC 58.828 45.833 0.00 0.00 0.00 2.08
18 19 4.593206 TGTCCTTCACTTCACCAGAACTAT 59.407 41.667 0.00 0.00 0.00 2.12
19 20 3.964688 TGTCCTTCACTTCACCAGAACTA 59.035 43.478 0.00 0.00 0.00 2.24
20 21 2.771943 TGTCCTTCACTTCACCAGAACT 59.228 45.455 0.00 0.00 0.00 3.01
21 22 3.134458 CTGTCCTTCACTTCACCAGAAC 58.866 50.000 0.00 0.00 0.00 3.01
22 23 3.038280 TCTGTCCTTCACTTCACCAGAA 58.962 45.455 0.00 0.00 0.00 3.02
23 24 2.677914 TCTGTCCTTCACTTCACCAGA 58.322 47.619 0.00 0.00 0.00 3.86
24 25 3.692257 ATCTGTCCTTCACTTCACCAG 57.308 47.619 0.00 0.00 0.00 4.00
25 26 5.560722 TTTATCTGTCCTTCACTTCACCA 57.439 39.130 0.00 0.00 0.00 4.17
26 27 7.987458 TGATATTTATCTGTCCTTCACTTCACC 59.013 37.037 0.00 0.00 33.88 4.02
27 28 8.948631 TGATATTTATCTGTCCTTCACTTCAC 57.051 34.615 0.00 0.00 33.88 3.18
122 123 9.814899 TGCTCAGAAAAATGTGAAGATTTTAAA 57.185 25.926 0.00 0.00 35.01 1.52
123 124 9.814899 TTGCTCAGAAAAATGTGAAGATTTTAA 57.185 25.926 0.00 0.00 35.01 1.52
124 125 9.985730 ATTGCTCAGAAAAATGTGAAGATTTTA 57.014 25.926 0.00 0.00 35.01 1.52
125 126 8.897872 ATTGCTCAGAAAAATGTGAAGATTTT 57.102 26.923 0.00 0.00 37.16 1.82
126 127 8.897872 AATTGCTCAGAAAAATGTGAAGATTT 57.102 26.923 0.00 0.00 0.00 2.17
127 128 8.897872 AAATTGCTCAGAAAAATGTGAAGATT 57.102 26.923 0.00 0.00 0.00 2.40
128 129 8.897872 AAAATTGCTCAGAAAAATGTGAAGAT 57.102 26.923 0.00 0.00 0.00 2.40
129 130 7.980662 TGAAAATTGCTCAGAAAAATGTGAAGA 59.019 29.630 0.00 0.00 0.00 2.87
130 131 8.133754 TGAAAATTGCTCAGAAAAATGTGAAG 57.866 30.769 0.00 0.00 0.00 3.02
131 132 8.665643 ATGAAAATTGCTCAGAAAAATGTGAA 57.334 26.923 0.00 0.00 0.00 3.18
132 133 9.932207 ATATGAAAATTGCTCAGAAAAATGTGA 57.068 25.926 0.00 0.00 0.00 3.58
210 211 6.702716 TTTCGGTCAGGTTCAAGTATTTTT 57.297 33.333 0.00 0.00 0.00 1.94
211 212 6.702716 TTTTCGGTCAGGTTCAAGTATTTT 57.297 33.333 0.00 0.00 0.00 1.82
212 213 6.702716 TTTTTCGGTCAGGTTCAAGTATTT 57.297 33.333 0.00 0.00 0.00 1.40
241 242 2.927871 GCTTAACAAATGGGCTGTGCAG 60.928 50.000 0.00 0.00 0.00 4.41
242 243 1.000731 GCTTAACAAATGGGCTGTGCA 59.999 47.619 0.00 0.00 0.00 4.57
243 244 1.273327 AGCTTAACAAATGGGCTGTGC 59.727 47.619 0.00 0.00 31.68 4.57
244 245 3.758554 AGTAGCTTAACAAATGGGCTGTG 59.241 43.478 0.00 0.00 34.88 3.66
245 246 4.034285 AGTAGCTTAACAAATGGGCTGT 57.966 40.909 0.00 0.00 34.88 4.40
246 247 5.066505 CCTAAGTAGCTTAACAAATGGGCTG 59.933 44.000 0.00 0.00 34.88 4.85
247 248 5.193679 CCTAAGTAGCTTAACAAATGGGCT 58.806 41.667 0.00 0.00 37.08 5.19
248 249 4.202020 GCCTAAGTAGCTTAACAAATGGGC 60.202 45.833 0.00 0.00 0.00 5.36
249 250 4.035208 CGCCTAAGTAGCTTAACAAATGGG 59.965 45.833 0.00 0.00 0.00 4.00
250 251 4.873827 TCGCCTAAGTAGCTTAACAAATGG 59.126 41.667 0.00 0.00 0.00 3.16
251 252 6.604735 ATCGCCTAAGTAGCTTAACAAATG 57.395 37.500 0.00 0.00 0.00 2.32
252 253 7.270047 TGTATCGCCTAAGTAGCTTAACAAAT 58.730 34.615 0.00 0.00 0.00 2.32
253 254 6.632909 TGTATCGCCTAAGTAGCTTAACAAA 58.367 36.000 0.00 0.00 0.00 2.83
254 255 6.211587 TGTATCGCCTAAGTAGCTTAACAA 57.788 37.500 0.00 0.00 0.00 2.83
255 256 5.840243 TGTATCGCCTAAGTAGCTTAACA 57.160 39.130 0.00 0.00 0.00 2.41
256 257 6.271566 AGTTGTATCGCCTAAGTAGCTTAAC 58.728 40.000 0.00 0.00 0.00 2.01
257 258 6.320672 AGAGTTGTATCGCCTAAGTAGCTTAA 59.679 38.462 0.00 0.00 0.00 1.85
258 259 5.826737 AGAGTTGTATCGCCTAAGTAGCTTA 59.173 40.000 0.00 0.00 0.00 3.09
259 260 4.645588 AGAGTTGTATCGCCTAAGTAGCTT 59.354 41.667 0.00 0.00 0.00 3.74
260 261 4.208746 AGAGTTGTATCGCCTAAGTAGCT 58.791 43.478 0.00 0.00 0.00 3.32
261 262 4.571372 AGAGTTGTATCGCCTAAGTAGC 57.429 45.455 0.00 0.00 0.00 3.58
262 263 7.675962 AGATAGAGTTGTATCGCCTAAGTAG 57.324 40.000 0.00 0.00 34.98 2.57
263 264 8.997323 GTAAGATAGAGTTGTATCGCCTAAGTA 58.003 37.037 0.00 0.00 34.98 2.24
264 265 6.963083 AAGATAGAGTTGTATCGCCTAAGT 57.037 37.500 0.00 0.00 34.98 2.24
265 266 7.016466 CGTAAGATAGAGTTGTATCGCCTAAG 58.984 42.308 0.00 0.00 43.02 2.18
266 267 6.567321 GCGTAAGATAGAGTTGTATCGCCTAA 60.567 42.308 0.00 0.00 43.02 2.69
267 268 5.106791 GCGTAAGATAGAGTTGTATCGCCTA 60.107 44.000 0.00 0.00 43.02 3.93
268 269 4.320348 GCGTAAGATAGAGTTGTATCGCCT 60.320 45.833 0.00 0.00 43.02 5.52
269 270 3.913163 GCGTAAGATAGAGTTGTATCGCC 59.087 47.826 0.00 0.00 43.02 5.54
270 271 3.913163 GGCGTAAGATAGAGTTGTATCGC 59.087 47.826 0.00 0.00 43.02 4.58
271 272 5.359716 AGGCGTAAGATAGAGTTGTATCG 57.640 43.478 0.00 0.00 43.02 2.92
272 273 7.172875 TCTGTAGGCGTAAGATAGAGTTGTATC 59.827 40.741 0.00 0.00 43.02 2.24
273 274 6.996879 TCTGTAGGCGTAAGATAGAGTTGTAT 59.003 38.462 0.00 0.00 43.02 2.29
274 275 6.351711 TCTGTAGGCGTAAGATAGAGTTGTA 58.648 40.000 0.00 0.00 43.02 2.41
275 276 5.191426 TCTGTAGGCGTAAGATAGAGTTGT 58.809 41.667 0.00 0.00 43.02 3.32
276 277 5.752892 TCTGTAGGCGTAAGATAGAGTTG 57.247 43.478 0.00 0.00 43.02 3.16
277 278 6.770746 TTTCTGTAGGCGTAAGATAGAGTT 57.229 37.500 0.00 0.00 43.02 3.01
278 279 6.963083 ATTTCTGTAGGCGTAAGATAGAGT 57.037 37.500 0.00 0.00 43.02 3.24
279 280 9.400638 CTTAATTTCTGTAGGCGTAAGATAGAG 57.599 37.037 0.00 0.00 43.02 2.43
280 281 9.128404 TCTTAATTTCTGTAGGCGTAAGATAGA 57.872 33.333 0.00 0.00 43.02 1.98
281 282 9.745880 TTCTTAATTTCTGTAGGCGTAAGATAG 57.254 33.333 0.00 0.00 43.02 2.08
283 284 9.444600 TTTTCTTAATTTCTGTAGGCGTAAGAT 57.555 29.630 0.00 0.00 43.02 2.40
284 285 8.836268 TTTTCTTAATTTCTGTAGGCGTAAGA 57.164 30.769 0.00 0.00 43.02 2.10
309 310 7.063780 CAGCATCTCAACTTTTTGTGTCTTTTT 59.936 33.333 0.00 0.00 34.02 1.94
310 311 6.532657 CAGCATCTCAACTTTTTGTGTCTTTT 59.467 34.615 0.00 0.00 34.02 2.27
311 312 6.038356 CAGCATCTCAACTTTTTGTGTCTTT 58.962 36.000 0.00 0.00 34.02 2.52
312 313 5.450965 CCAGCATCTCAACTTTTTGTGTCTT 60.451 40.000 0.00 0.00 34.02 3.01
313 314 4.037208 CCAGCATCTCAACTTTTTGTGTCT 59.963 41.667 0.00 0.00 34.02 3.41
314 315 4.293415 CCAGCATCTCAACTTTTTGTGTC 58.707 43.478 0.00 0.00 34.02 3.67
315 316 3.068590 CCCAGCATCTCAACTTTTTGTGT 59.931 43.478 0.00 0.00 34.02 3.72
316 317 3.318839 TCCCAGCATCTCAACTTTTTGTG 59.681 43.478 0.00 0.00 34.02 3.33
317 318 3.565307 TCCCAGCATCTCAACTTTTTGT 58.435 40.909 0.00 0.00 34.02 2.83
318 319 4.796038 ATCCCAGCATCTCAACTTTTTG 57.204 40.909 0.00 0.00 0.00 2.44
319 320 4.834496 TGAATCCCAGCATCTCAACTTTTT 59.166 37.500 0.00 0.00 0.00 1.94
320 321 4.410099 TGAATCCCAGCATCTCAACTTTT 58.590 39.130 0.00 0.00 0.00 2.27
321 322 4.038271 TGAATCCCAGCATCTCAACTTT 57.962 40.909 0.00 0.00 0.00 2.66
322 323 3.726557 TGAATCCCAGCATCTCAACTT 57.273 42.857 0.00 0.00 0.00 2.66
323 324 3.726557 TTGAATCCCAGCATCTCAACT 57.273 42.857 0.00 0.00 0.00 3.16
324 325 3.119352 GGTTTGAATCCCAGCATCTCAAC 60.119 47.826 0.00 0.00 0.00 3.18
325 326 3.091545 GGTTTGAATCCCAGCATCTCAA 58.908 45.455 0.00 0.00 0.00 3.02
326 327 2.621407 GGGTTTGAATCCCAGCATCTCA 60.621 50.000 6.45 0.00 44.05 3.27
327 328 2.027385 GGGTTTGAATCCCAGCATCTC 58.973 52.381 6.45 0.00 44.05 2.75
328 329 2.149973 GGGTTTGAATCCCAGCATCT 57.850 50.000 6.45 0.00 44.05 2.90
335 336 2.356844 GGTAGTCCTGGGTTTGAATCCC 60.357 54.545 4.32 4.32 44.81 3.85
336 337 2.576648 AGGTAGTCCTGGGTTTGAATCC 59.423 50.000 0.00 0.00 43.33 3.01
348 349 2.303311 GAGTTTTCCAGCAGGTAGTCCT 59.697 50.000 0.00 0.00 46.37 3.85
349 350 2.303311 AGAGTTTTCCAGCAGGTAGTCC 59.697 50.000 0.00 0.00 35.89 3.85
350 351 3.330267 CAGAGTTTTCCAGCAGGTAGTC 58.670 50.000 0.00 0.00 35.89 2.59
351 352 2.039084 CCAGAGTTTTCCAGCAGGTAGT 59.961 50.000 0.00 0.00 35.89 2.73
352 353 2.303022 TCCAGAGTTTTCCAGCAGGTAG 59.697 50.000 0.00 0.00 35.89 3.18
353 354 2.334977 TCCAGAGTTTTCCAGCAGGTA 58.665 47.619 0.00 0.00 35.89 3.08
354 355 1.140312 TCCAGAGTTTTCCAGCAGGT 58.860 50.000 0.00 0.00 35.89 4.00
355 356 2.026449 AGATCCAGAGTTTTCCAGCAGG 60.026 50.000 0.00 0.00 0.00 4.85
356 357 3.347077 AGATCCAGAGTTTTCCAGCAG 57.653 47.619 0.00 0.00 0.00 4.24
357 358 4.287067 AGTTAGATCCAGAGTTTTCCAGCA 59.713 41.667 0.00 0.00 0.00 4.41
358 359 4.837972 AGTTAGATCCAGAGTTTTCCAGC 58.162 43.478 0.00 0.00 0.00 4.85
359 360 7.038659 CACTAGTTAGATCCAGAGTTTTCCAG 58.961 42.308 0.00 0.00 0.00 3.86
360 361 6.070767 CCACTAGTTAGATCCAGAGTTTTCCA 60.071 42.308 0.00 0.00 0.00 3.53
361 362 6.342111 CCACTAGTTAGATCCAGAGTTTTCC 58.658 44.000 0.00 0.00 0.00 3.13
362 363 6.154706 TCCCACTAGTTAGATCCAGAGTTTTC 59.845 42.308 0.00 0.00 0.00 2.29
363 364 6.023603 TCCCACTAGTTAGATCCAGAGTTTT 58.976 40.000 0.00 0.00 0.00 2.43
364 365 5.590818 TCCCACTAGTTAGATCCAGAGTTT 58.409 41.667 0.00 0.00 0.00 2.66
365 366 5.208294 TCCCACTAGTTAGATCCAGAGTT 57.792 43.478 0.00 0.00 0.00 3.01
366 367 4.883021 TCCCACTAGTTAGATCCAGAGT 57.117 45.455 0.00 0.00 0.00 3.24
367 368 5.510520 GCAATCCCACTAGTTAGATCCAGAG 60.511 48.000 0.00 0.00 0.00 3.35
368 369 4.345257 GCAATCCCACTAGTTAGATCCAGA 59.655 45.833 0.00 0.00 0.00 3.86
369 370 4.503991 GGCAATCCCACTAGTTAGATCCAG 60.504 50.000 0.00 0.00 0.00 3.86
370 371 3.391296 GGCAATCCCACTAGTTAGATCCA 59.609 47.826 0.00 0.00 0.00 3.41
371 372 3.648545 AGGCAATCCCACTAGTTAGATCC 59.351 47.826 0.00 0.00 35.39 3.36
372 373 4.101741 ACAGGCAATCCCACTAGTTAGATC 59.898 45.833 0.00 0.00 35.39 2.75
373 374 4.040755 ACAGGCAATCCCACTAGTTAGAT 58.959 43.478 0.00 0.00 35.39 1.98
374 375 3.197766 CACAGGCAATCCCACTAGTTAGA 59.802 47.826 0.00 0.00 35.39 2.10
375 376 3.535561 CACAGGCAATCCCACTAGTTAG 58.464 50.000 0.00 0.00 35.39 2.34
376 377 2.355716 GCACAGGCAATCCCACTAGTTA 60.356 50.000 0.00 0.00 40.72 2.24
377 378 1.614317 GCACAGGCAATCCCACTAGTT 60.614 52.381 0.00 0.00 40.72 2.24
378 379 0.035056 GCACAGGCAATCCCACTAGT 60.035 55.000 0.00 0.00 40.72 2.57
379 380 2.785868 GCACAGGCAATCCCACTAG 58.214 57.895 0.00 0.00 40.72 2.57
390 391 3.688185 CCATATATCACATCTGCACAGGC 59.312 47.826 0.00 0.00 41.68 4.85
391 392 4.259356 CCCATATATCACATCTGCACAGG 58.741 47.826 0.00 0.00 0.00 4.00
392 393 3.688185 GCCCATATATCACATCTGCACAG 59.312 47.826 0.00 0.00 0.00 3.66
393 394 3.678289 GCCCATATATCACATCTGCACA 58.322 45.455 0.00 0.00 0.00 4.57
394 395 2.674852 CGCCCATATATCACATCTGCAC 59.325 50.000 0.00 0.00 0.00 4.57
395 396 2.566724 TCGCCCATATATCACATCTGCA 59.433 45.455 0.00 0.00 0.00 4.41
396 397 2.932614 GTCGCCCATATATCACATCTGC 59.067 50.000 0.00 0.00 0.00 4.26
397 398 3.525537 GGTCGCCCATATATCACATCTG 58.474 50.000 0.00 0.00 0.00 2.90
398 399 2.501723 GGGTCGCCCATATATCACATCT 59.498 50.000 9.72 0.00 44.65 2.90
399 400 2.906354 GGGTCGCCCATATATCACATC 58.094 52.381 9.72 0.00 44.65 3.06
411 412 4.256180 CCTGCCTATGGGTCGCCC 62.256 72.222 7.87 7.87 45.71 6.13
412 413 4.937431 GCCTGCCTATGGGTCGCC 62.937 72.222 0.00 0.00 34.45 5.54
413 414 4.937431 GGCCTGCCTATGGGTCGC 62.937 72.222 0.00 0.00 34.45 5.19
414 415 4.256180 GGGCCTGCCTATGGGTCG 62.256 72.222 8.29 0.00 36.10 4.79
415 416 4.256180 CGGGCCTGCCTATGGGTC 62.256 72.222 8.29 0.00 36.10 4.46
416 417 4.815973 TCGGGCCTGCCTATGGGT 62.816 66.667 6.73 0.00 36.10 4.51
417 418 3.482232 CTTCGGGCCTGCCTATGGG 62.482 68.421 6.73 0.00 36.10 4.00
418 419 2.111878 CTTCGGGCCTGCCTATGG 59.888 66.667 6.73 0.00 36.10 2.74
419 420 2.592861 GCTTCGGGCCTGCCTATG 60.593 66.667 6.73 0.00 36.10 2.23
420 421 3.089874 TGCTTCGGGCCTGCCTAT 61.090 61.111 6.73 0.00 40.92 2.57
421 422 3.785859 CTGCTTCGGGCCTGCCTA 61.786 66.667 6.73 0.00 40.92 3.93
424 425 4.704833 TGTCTGCTTCGGGCCTGC 62.705 66.667 6.73 5.14 40.92 4.85
425 426 2.743928 GTGTCTGCTTCGGGCCTG 60.744 66.667 4.71 4.71 40.92 4.85
426 427 4.021925 GGTGTCTGCTTCGGGCCT 62.022 66.667 0.84 0.00 40.92 5.19
427 428 3.842925 TTGGTGTCTGCTTCGGGCC 62.843 63.158 0.00 0.00 40.92 5.80
428 429 1.244019 ATTTGGTGTCTGCTTCGGGC 61.244 55.000 0.00 0.00 42.22 6.13
429 430 0.523072 CATTTGGTGTCTGCTTCGGG 59.477 55.000 0.00 0.00 0.00 5.14
430 431 0.523072 CCATTTGGTGTCTGCTTCGG 59.477 55.000 0.00 0.00 0.00 4.30
431 432 1.197721 GTCCATTTGGTGTCTGCTTCG 59.802 52.381 0.00 0.00 36.34 3.79
432 433 1.197721 CGTCCATTTGGTGTCTGCTTC 59.802 52.381 0.00 0.00 36.34 3.86
433 434 1.238439 CGTCCATTTGGTGTCTGCTT 58.762 50.000 0.00 0.00 36.34 3.91
434 435 1.237285 GCGTCCATTTGGTGTCTGCT 61.237 55.000 0.00 0.00 36.34 4.24
435 436 1.210155 GCGTCCATTTGGTGTCTGC 59.790 57.895 0.00 0.00 36.34 4.26
436 437 1.497278 CGCGTCCATTTGGTGTCTG 59.503 57.895 0.00 0.00 36.34 3.51
437 438 2.325082 GCGCGTCCATTTGGTGTCT 61.325 57.895 8.43 0.00 36.34 3.41
438 439 2.175811 GCGCGTCCATTTGGTGTC 59.824 61.111 8.43 0.00 36.34 3.67
439 440 3.722295 CGCGCGTCCATTTGGTGT 61.722 61.111 24.19 0.00 36.34 4.16
440 441 4.459331 CCGCGCGTCCATTTGGTG 62.459 66.667 29.95 4.86 36.34 4.17
456 457 4.719369 ACACGAGACGGAAGCGCC 62.719 66.667 2.29 0.00 0.00 6.53
457 458 2.717809 GAACACGAGACGGAAGCGC 61.718 63.158 0.00 0.00 0.00 5.92
458 459 2.426183 CGAACACGAGACGGAAGCG 61.426 63.158 0.00 0.00 0.00 4.68
459 460 1.371389 ACGAACACGAGACGGAAGC 60.371 57.895 0.00 0.00 0.00 3.86
460 461 0.317603 ACACGAACACGAGACGGAAG 60.318 55.000 0.00 0.00 0.00 3.46
461 462 0.593008 CACACGAACACGAGACGGAA 60.593 55.000 0.00 0.00 0.00 4.30
462 463 1.009335 CACACGAACACGAGACGGA 60.009 57.895 0.00 0.00 0.00 4.69
463 464 2.014554 CCACACGAACACGAGACGG 61.015 63.158 0.00 0.00 0.00 4.79
464 465 1.009335 TCCACACGAACACGAGACG 60.009 57.895 0.00 0.00 0.00 4.18
465 466 0.248743 TGTCCACACGAACACGAGAC 60.249 55.000 0.00 0.00 0.00 3.36
466 467 0.030235 CTGTCCACACGAACACGAGA 59.970 55.000 0.00 0.00 0.00 4.04
467 468 0.030235 TCTGTCCACACGAACACGAG 59.970 55.000 0.00 0.00 0.00 4.18
468 469 0.456628 TTCTGTCCACACGAACACGA 59.543 50.000 0.00 0.00 0.00 4.35
469 470 1.282817 TTTCTGTCCACACGAACACG 58.717 50.000 0.00 0.00 0.00 4.49
470 471 2.869801 TGATTTCTGTCCACACGAACAC 59.130 45.455 0.00 0.00 0.00 3.32
471 472 2.869801 GTGATTTCTGTCCACACGAACA 59.130 45.455 0.00 0.00 0.00 3.18
472 473 3.521524 GTGATTTCTGTCCACACGAAC 57.478 47.619 0.00 0.00 0.00 3.95
476 477 1.225855 TGCGTGATTTCTGTCCACAC 58.774 50.000 0.00 0.00 0.00 3.82
477 478 2.183478 ATGCGTGATTTCTGTCCACA 57.817 45.000 0.00 0.00 0.00 4.17
478 479 4.678509 TTTATGCGTGATTTCTGTCCAC 57.321 40.909 0.00 0.00 0.00 4.02
479 480 5.895636 AATTTATGCGTGATTTCTGTCCA 57.104 34.783 0.00 0.00 0.00 4.02
480 481 5.516339 CCAAATTTATGCGTGATTTCTGTCC 59.484 40.000 0.00 0.00 0.00 4.02
481 482 5.516339 CCCAAATTTATGCGTGATTTCTGTC 59.484 40.000 0.00 0.00 0.00 3.51
482 483 5.410067 CCCAAATTTATGCGTGATTTCTGT 58.590 37.500 0.00 0.00 0.00 3.41
483 484 4.268405 GCCCAAATTTATGCGTGATTTCTG 59.732 41.667 0.00 0.00 0.00 3.02
484 485 4.432712 GCCCAAATTTATGCGTGATTTCT 58.567 39.130 0.00 0.00 0.00 2.52
485 486 3.555547 GGCCCAAATTTATGCGTGATTTC 59.444 43.478 0.00 0.00 0.00 2.17
486 487 3.197549 AGGCCCAAATTTATGCGTGATTT 59.802 39.130 0.00 0.00 0.00 2.17
487 488 2.765699 AGGCCCAAATTTATGCGTGATT 59.234 40.909 0.00 0.00 0.00 2.57
488 489 2.101249 CAGGCCCAAATTTATGCGTGAT 59.899 45.455 20.52 1.55 40.88 3.06
489 490 1.476085 CAGGCCCAAATTTATGCGTGA 59.524 47.619 20.52 0.00 40.88 4.35
490 491 1.476085 TCAGGCCCAAATTTATGCGTG 59.524 47.619 19.69 19.69 40.05 5.34
491 492 1.846007 TCAGGCCCAAATTTATGCGT 58.154 45.000 0.00 0.00 0.00 5.24
492 493 2.957491 TTCAGGCCCAAATTTATGCG 57.043 45.000 0.00 0.00 0.00 4.73
493 494 6.203338 CACATATTTCAGGCCCAAATTTATGC 59.797 38.462 14.03 0.00 0.00 3.14
494 495 7.274447 ACACATATTTCAGGCCCAAATTTATG 58.726 34.615 14.03 14.00 0.00 1.90
495 496 7.418942 GGACACATATTTCAGGCCCAAATTTAT 60.419 37.037 14.03 2.41 0.00 1.40
496 497 6.127196 GGACACATATTTCAGGCCCAAATTTA 60.127 38.462 14.03 0.30 0.00 1.40
497 498 5.338300 GGACACATATTTCAGGCCCAAATTT 60.338 40.000 14.03 5.49 0.00 1.82
498 499 4.162131 GGACACATATTTCAGGCCCAAATT 59.838 41.667 14.03 2.27 0.00 1.82
499 500 3.706086 GGACACATATTTCAGGCCCAAAT 59.294 43.478 13.46 13.46 0.00 2.32
500 501 3.096092 GGACACATATTTCAGGCCCAAA 58.904 45.455 0.00 0.00 0.00 3.28
501 502 2.042297 TGGACACATATTTCAGGCCCAA 59.958 45.455 0.00 0.00 0.00 4.12
502 503 1.638070 TGGACACATATTTCAGGCCCA 59.362 47.619 0.00 0.00 0.00 5.36
503 504 2.024414 GTGGACACATATTTCAGGCCC 58.976 52.381 0.00 0.00 0.00 5.80
504 505 2.722094 TGTGGACACATATTTCAGGCC 58.278 47.619 0.13 0.00 36.21 5.19
525 526 2.388310 TTGTGTTTGACTCGTGTCCA 57.612 45.000 14.57 1.09 42.28 4.02
527 528 4.035017 CCAAATTGTGTTTGACTCGTGTC 58.965 43.478 10.62 10.62 43.20 3.67
531 532 3.708563 ACCCAAATTGTGTTTGACTCG 57.291 42.857 2.31 0.00 0.00 4.18
537 538 2.979240 ACGCAAACCCAAATTGTGTTT 58.021 38.095 0.82 0.82 46.23 2.83
538 539 2.682155 ACGCAAACCCAAATTGTGTT 57.318 40.000 0.02 0.00 46.23 3.32
540 541 1.127701 CGACGCAAACCCAAATTGTG 58.872 50.000 0.00 0.00 42.48 3.33
542 543 1.281566 GCCGACGCAAACCCAAATTG 61.282 55.000 0.00 0.00 34.03 2.32
543 544 1.006688 GCCGACGCAAACCCAAATT 60.007 52.632 0.00 0.00 34.03 1.82
544 545 2.648454 GCCGACGCAAACCCAAAT 59.352 55.556 0.00 0.00 34.03 2.32
545 546 3.597728 GGCCGACGCAAACCCAAA 61.598 61.111 0.00 0.00 36.38 3.28
546 547 4.572571 AGGCCGACGCAAACCCAA 62.573 61.111 0.00 0.00 36.38 4.12
549 550 3.284449 AACAGGCCGACGCAAACC 61.284 61.111 0.00 0.00 36.38 3.27
550 551 2.051345 CAACAGGCCGACGCAAAC 60.051 61.111 0.00 0.00 36.38 2.93
551 552 3.283684 CCAACAGGCCGACGCAAA 61.284 61.111 0.00 0.00 36.38 3.68
579 580 4.907034 CGTGATCGGAGCGGACGG 62.907 72.222 0.00 0.00 0.00 4.79
593 594 0.509499 ACGTATTTGGTTCACGCGTG 59.491 50.000 32.76 32.76 39.23 5.34
594 595 0.785979 GACGTATTTGGTTCACGCGT 59.214 50.000 5.58 5.58 39.23 6.01
595 596 0.246603 CGACGTATTTGGTTCACGCG 60.247 55.000 3.53 3.53 39.23 6.01
596 597 0.094046 CCGACGTATTTGGTTCACGC 59.906 55.000 0.00 0.00 39.23 5.34
597 598 0.094046 GCCGACGTATTTGGTTCACG 59.906 55.000 0.00 0.00 41.32 4.35
598 599 0.094046 CGCCGACGTATTTGGTTCAC 59.906 55.000 0.00 0.00 33.53 3.18
599 600 2.447408 CGCCGACGTATTTGGTTCA 58.553 52.632 0.00 0.00 33.53 3.18
658 669 1.170442 TGCTCACAAGTCATGCATGG 58.830 50.000 25.97 12.57 0.00 3.66
693 704 4.926140 TCACGTCCTAGTACGAGAGATA 57.074 45.455 15.30 0.00 45.68 1.98
746 772 3.545228 CGTCTTCGTCTAGATCTGCACTC 60.545 52.174 5.18 0.00 0.00 3.51
756 782 0.096628 CCGACACCGTCTTCGTCTAG 59.903 60.000 0.00 0.00 33.23 2.43
886 936 8.770828 GTTCGTTGCCAATGTAATAGTGTATAT 58.229 33.333 0.00 0.00 0.00 0.86
887 937 7.764901 TGTTCGTTGCCAATGTAATAGTGTATA 59.235 33.333 0.00 0.00 0.00 1.47
888 938 6.596106 TGTTCGTTGCCAATGTAATAGTGTAT 59.404 34.615 0.00 0.00 0.00 2.29
889 939 5.932883 TGTTCGTTGCCAATGTAATAGTGTA 59.067 36.000 0.00 0.00 0.00 2.90
890 940 4.757657 TGTTCGTTGCCAATGTAATAGTGT 59.242 37.500 0.00 0.00 0.00 3.55
891 941 5.086058 GTGTTCGTTGCCAATGTAATAGTG 58.914 41.667 0.00 0.00 0.00 2.74
929 979 1.678269 CCTCGAGCGAAAACTCAGCG 61.678 60.000 6.99 0.00 36.42 5.18
932 982 0.386858 CGACCTCGAGCGAAAACTCA 60.387 55.000 6.99 0.00 43.02 3.41
969 1028 4.935808 AGACCAAGAAAAATCGATAGCGTT 59.064 37.500 0.00 0.00 38.98 4.84
970 1029 4.504858 AGACCAAGAAAAATCGATAGCGT 58.495 39.130 0.00 0.00 38.98 5.07
971 1030 6.771188 ATAGACCAAGAAAAATCGATAGCG 57.229 37.500 0.00 0.00 39.35 4.26
993 1052 3.016736 CTCCAACTCGGCCATTGTAAAT 58.983 45.455 2.24 0.00 33.14 1.40
997 1056 0.400213 TTCTCCAACTCGGCCATTGT 59.600 50.000 2.24 0.00 33.14 2.71
1066 1143 3.134081 TCCAACTTCTTCTGGTTCTCGTT 59.866 43.478 0.00 0.00 34.11 3.85
1203 1289 3.560882 GGATAGCTAGGGCAATGCAGAAT 60.561 47.826 7.79 0.00 41.70 2.40
1205 1291 1.349026 GGATAGCTAGGGCAATGCAGA 59.651 52.381 7.79 0.00 41.70 4.26
1207 1293 1.139439 TGGATAGCTAGGGCAATGCA 58.861 50.000 7.79 0.00 41.70 3.96
1208 1294 2.089980 CATGGATAGCTAGGGCAATGC 58.910 52.381 0.00 0.00 41.70 3.56
1209 1295 2.089980 GCATGGATAGCTAGGGCAATG 58.910 52.381 0.00 2.14 41.70 2.82
1210 1296 1.005215 GGCATGGATAGCTAGGGCAAT 59.995 52.381 0.00 0.00 41.70 3.56
1218 1304 0.678395 CGAGACTGGCATGGATAGCT 59.322 55.000 0.00 0.00 0.00 3.32
1223 1309 0.461548 GACATCGAGACTGGCATGGA 59.538 55.000 0.00 0.00 0.00 3.41
1248 1340 2.167075 GGGAGCAAATCACCAAATCAGG 59.833 50.000 0.00 0.00 0.00 3.86
1282 1383 3.291101 ATTCGTACACCGTGCCGCT 62.291 57.895 0.00 0.00 37.94 5.52
1428 1529 3.610791 CTGCGCGACGAGGTTCTGA 62.611 63.158 12.10 0.00 0.00 3.27
1429 1530 3.175240 CTGCGCGACGAGGTTCTG 61.175 66.667 12.10 0.00 0.00 3.02
1577 1678 9.891828 GAGTATTCAGTAACTAGATGAGACATG 57.108 37.037 0.00 0.00 0.00 3.21
1578 1679 9.073475 GGAGTATTCAGTAACTAGATGAGACAT 57.927 37.037 0.00 0.00 0.00 3.06
1579 1680 8.275758 AGGAGTATTCAGTAACTAGATGAGACA 58.724 37.037 0.00 0.00 0.00 3.41
1580 1681 8.685838 AGGAGTATTCAGTAACTAGATGAGAC 57.314 38.462 0.00 0.00 0.00 3.36
1610 1752 9.512435 CATCAAATTAAAGGTGAGAAATAGCAG 57.488 33.333 0.00 0.00 0.00 4.24
1626 1796 7.339212 ACCAACGGATCAGATTCATCAAATTAA 59.661 33.333 0.00 0.00 0.00 1.40
1991 2670 4.200092 CCCCTTAATGCTCACTAGGAAAC 58.800 47.826 0.00 0.00 0.00 2.78
2002 2682 1.559682 ACGATGACACCCCTTAATGCT 59.440 47.619 0.00 0.00 0.00 3.79
2036 2716 5.283457 ACCAGGAGCTAACATCTAACATC 57.717 43.478 0.00 0.00 0.00 3.06
2039 2719 5.086104 TGAACCAGGAGCTAACATCTAAC 57.914 43.478 0.00 0.00 0.00 2.34
2044 2724 3.009473 ACACATGAACCAGGAGCTAACAT 59.991 43.478 0.00 0.00 0.00 2.71
2065 2775 3.454375 TCTTTTCGTCCACTCAGACAAC 58.546 45.455 0.00 0.00 36.52 3.32
2221 2985 6.457934 CCAGCACAAGAAAGCATACTCATTAG 60.458 42.308 0.00 0.00 0.00 1.73
2453 3221 9.506042 AGAACCCCCAAATATAAAGATTCAAAT 57.494 29.630 0.00 0.00 0.00 2.32
2483 3261 7.742767 AGTAGTACATAAACAGGTTGTTTCCT 58.257 34.615 10.17 4.14 46.61 3.36
2501 3279 6.455646 GCACATGAGCACATACAAAGTAGTAC 60.456 42.308 10.48 0.00 35.09 2.73
2503 3281 4.393062 GCACATGAGCACATACAAAGTAGT 59.607 41.667 10.48 0.00 35.09 2.73
2504 3282 4.633126 AGCACATGAGCACATACAAAGTAG 59.367 41.667 17.61 0.00 35.09 2.57
2546 3324 4.093011 CCCTCTACCTATCATTAGCAGCT 58.907 47.826 0.00 0.00 0.00 4.24
2548 3326 6.865834 AATCCCTCTACCTATCATTAGCAG 57.134 41.667 0.00 0.00 0.00 4.24
2602 3441 7.849322 AACTGGTAAAATTGAATACAACCCT 57.151 32.000 0.00 0.00 38.90 4.34
2741 3590 9.362539 GTACATGATTTCTTTTCGTAAGTCCTA 57.637 33.333 0.00 0.00 39.48 2.94
2742 3591 8.095169 AGTACATGATTTCTTTTCGTAAGTCCT 58.905 33.333 0.00 0.00 39.48 3.85
2788 3637 3.569701 AGTTCCCAATATGCAATTAGCCG 59.430 43.478 0.00 0.00 44.83 5.52
2847 3697 7.113658 TGACTAGATGATAACCCTTGAGAAC 57.886 40.000 0.00 0.00 0.00 3.01
2874 3724 4.708421 AGTGGACGGCTGTTAAGATTACTA 59.292 41.667 0.00 0.00 0.00 1.82
2875 3725 3.514309 AGTGGACGGCTGTTAAGATTACT 59.486 43.478 0.00 0.00 0.00 2.24
2876 3726 3.617263 CAGTGGACGGCTGTTAAGATTAC 59.383 47.826 0.00 0.00 0.00 1.89
2877 3727 3.369052 CCAGTGGACGGCTGTTAAGATTA 60.369 47.826 1.68 0.00 32.41 1.75
2878 3728 2.615493 CCAGTGGACGGCTGTTAAGATT 60.615 50.000 1.68 0.00 32.41 2.40
2879 3729 1.066143 CCAGTGGACGGCTGTTAAGAT 60.066 52.381 1.68 0.00 32.41 2.40
2880 3730 0.320374 CCAGTGGACGGCTGTTAAGA 59.680 55.000 1.68 0.00 32.41 2.10
2881 3731 0.673644 CCCAGTGGACGGCTGTTAAG 60.674 60.000 11.95 0.00 32.41 1.85
2882 3732 1.373435 CCCAGTGGACGGCTGTTAA 59.627 57.895 11.95 0.00 32.41 2.01
2955 3807 1.134560 CGTGGACTAGGCTAGTGGAAC 59.865 57.143 30.75 21.83 39.59 3.62
2958 3810 0.456221 CACGTGGACTAGGCTAGTGG 59.544 60.000 30.75 18.12 39.59 4.00
2974 3827 1.330521 CACAAAGGATTATCCGCCACG 59.669 52.381 5.50 0.00 42.75 4.94
3049 3902 6.663093 TGTTTTCACAGAAGGCACCATATAAT 59.337 34.615 0.00 0.00 0.00 1.28
3417 4302 8.975410 TCTTTTGTCAAAGCATTATGAAGATG 57.025 30.769 0.00 0.00 39.56 2.90
3560 4445 2.316108 ACCTGTGATTGGTCAAAACCC 58.684 47.619 0.00 0.00 45.83 4.11
3844 4743 9.734620 GCTGCATGTGATATTCTTTACAATTTA 57.265 29.630 0.00 0.00 0.00 1.40
3854 4753 2.627515 ACGGCTGCATGTGATATTCT 57.372 45.000 0.50 0.00 0.00 2.40
3857 4756 4.393062 GCTTATAACGGCTGCATGTGATAT 59.607 41.667 0.50 0.00 0.00 1.63
3921 4849 3.840666 TCAGGTTCAGTCTGCCTTTATCT 59.159 43.478 0.00 0.00 32.63 1.98
4051 4991 8.708378 TCATATCCTCATAAAGAAGCTCAGAAA 58.292 33.333 0.00 0.00 0.00 2.52
4149 5139 7.581213 TCAAGTAAATTGTGTGAACAATCCT 57.419 32.000 4.67 0.14 39.18 3.24
4216 5206 8.484641 AATATGGCATGAATAATACTCGTGAG 57.515 34.615 10.98 0.00 32.50 3.51
4281 5272 7.280876 GCATCGATTCAATTAGGAATATAGCCA 59.719 37.037 0.00 0.00 37.61 4.75
4589 5580 8.184192 GCGTACTACTAGTTACAACTTAATCCA 58.816 37.037 0.00 0.00 40.37 3.41
4590 5581 7.645735 GGCGTACTACTAGTTACAACTTAATCC 59.354 40.741 0.00 0.00 40.37 3.01
4591 5582 7.645735 GGGCGTACTACTAGTTACAACTTAATC 59.354 40.741 0.00 0.00 40.37 1.75
4592 5583 7.122650 TGGGCGTACTACTAGTTACAACTTAAT 59.877 37.037 0.00 0.00 40.37 1.40
4593 5584 6.432783 TGGGCGTACTACTAGTTACAACTTAA 59.567 38.462 0.00 0.00 40.37 1.85
4594 5585 5.943416 TGGGCGTACTACTAGTTACAACTTA 59.057 40.000 0.00 0.00 40.37 2.24
4595 5586 4.766891 TGGGCGTACTACTAGTTACAACTT 59.233 41.667 0.00 0.00 40.37 2.66
4596 5587 4.156739 GTGGGCGTACTACTAGTTACAACT 59.843 45.833 0.00 0.00 42.91 3.16
4597 5588 4.082787 TGTGGGCGTACTACTAGTTACAAC 60.083 45.833 0.00 0.00 0.00 3.32
4598 5589 4.078537 TGTGGGCGTACTACTAGTTACAA 58.921 43.478 0.00 0.00 0.00 2.41
4599 5590 3.440173 GTGTGGGCGTACTACTAGTTACA 59.560 47.826 0.00 0.00 0.00 2.41
4600 5591 3.691609 AGTGTGGGCGTACTACTAGTTAC 59.308 47.826 0.00 0.00 0.00 2.50
4601 5592 3.955471 AGTGTGGGCGTACTACTAGTTA 58.045 45.455 0.00 0.00 0.00 2.24
4602 5593 2.800250 AGTGTGGGCGTACTACTAGTT 58.200 47.619 0.00 0.00 0.00 2.24
4603 5594 2.503895 AGTGTGGGCGTACTACTAGT 57.496 50.000 0.00 0.00 0.00 2.57
4604 5595 3.057033 ACAAAGTGTGGGCGTACTACTAG 60.057 47.826 0.00 0.00 0.00 2.57
4605 5596 2.892852 ACAAAGTGTGGGCGTACTACTA 59.107 45.455 0.00 0.00 0.00 1.82
4606 5597 1.690352 ACAAAGTGTGGGCGTACTACT 59.310 47.619 0.00 0.00 0.00 2.57
4719 5734 2.034066 GGCCTGCAAGCACCAGTA 59.966 61.111 9.97 0.00 0.00 2.74
4722 5737 2.203669 ATTGGCCTGCAAGCACCA 60.204 55.556 9.97 0.89 36.94 4.17
4729 5744 0.031917 AATGATGGGATTGGCCTGCA 60.032 50.000 3.32 0.00 36.66 4.41
4732 5747 2.674420 CAAGAATGATGGGATTGGCCT 58.326 47.619 3.32 0.00 36.66 5.19
4742 5757 2.240667 AGGTGGGAGTCCAAGAATGATG 59.759 50.000 12.30 0.00 46.04 3.07
4743 5758 2.240667 CAGGTGGGAGTCCAAGAATGAT 59.759 50.000 12.30 0.00 46.04 2.45
4777 5792 2.063156 TGCCGTCATCAAATTGTTGC 57.937 45.000 0.00 0.00 34.50 4.17
4792 5807 0.811219 ATGGTGTGACATCGATGCCG 60.811 55.000 25.11 2.18 37.07 5.69
4851 5866 3.319405 TGGTTTATTGGCGAAGAAAAGCA 59.681 39.130 15.25 15.25 35.78 3.91
5083 6746 1.078426 GGCGTCCATAACACAGCCT 60.078 57.895 0.00 0.00 41.21 4.58
5091 6754 1.006043 TCAATTTGGGGGCGTCCATAA 59.994 47.619 9.07 0.00 36.58 1.90
5123 6786 5.126384 GGGTGTCCGAATTTCATATCCAAAA 59.874 40.000 0.00 0.00 0.00 2.44
5158 6821 3.226884 CGGTTCCTCAAACGTCCAT 57.773 52.632 0.00 0.00 37.97 3.41
5178 6841 2.674747 CGGACCATTTTTGCCATCCAAG 60.675 50.000 0.00 0.00 34.34 3.61
5213 6876 1.202087 CGAACCGCACACAAAAAGTCA 60.202 47.619 0.00 0.00 0.00 3.41
5232 6895 1.857217 CATCTCCAACGATGAGAAGCG 59.143 52.381 0.00 0.00 42.63 4.68
5233 6896 1.596727 GCATCTCCAACGATGAGAAGC 59.403 52.381 12.30 12.30 43.58 3.86
5295 6990 9.086336 CCATTCAAAAAGCGTATGAACATTTAT 57.914 29.630 3.55 0.00 36.03 1.40
5310 7005 5.333299 TGCATCAGGATCCATTCAAAAAG 57.667 39.130 15.82 0.00 0.00 2.27
5402 7097 8.289939 TGTCCTAGTTAGTATTGGTGTAAGAG 57.710 38.462 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.