Multiple sequence alignment - TraesCS4A01G340300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G340300 chr4A 100.000 4832 0 0 1 4832 621505611 621510442 0.000000e+00 8924.0
1 TraesCS4A01G340300 chr4A 90.149 1208 65 17 63 1246 578170668 578169491 0.000000e+00 1522.0
2 TraesCS4A01G340300 chr4A 88.732 71 3 1 1 66 578170874 578170804 1.110000e-11 82.4
3 TraesCS4A01G340300 chr3B 97.885 4633 60 9 1 4631 756246487 756241891 0.000000e+00 7978.0
4 TraesCS4A01G340300 chr3B 79.116 249 22 20 1552 1777 782348943 782349184 1.400000e-30 145.0
5 TraesCS4A01G340300 chr1A 98.538 4445 53 9 1 4440 589458885 589463322 0.000000e+00 7838.0
6 TraesCS4A01G340300 chr1A 95.044 2482 86 15 1774 4235 514560949 514563413 0.000000e+00 3868.0
7 TraesCS4A01G340300 chr1A 93.178 1202 59 11 63 1246 514559759 514560955 0.000000e+00 1744.0
8 TraesCS4A01G340300 chr1A 89.916 119 12 0 1441 1559 541898239 541898121 2.330000e-33 154.0
9 TraesCS4A01G340300 chr1A 91.667 96 8 0 1434 1529 19492300 19492205 3.030000e-27 134.0
10 TraesCS4A01G340300 chr1A 94.118 51 3 0 15 65 514559572 514559622 1.440000e-10 78.7
11 TraesCS4A01G340300 chr6B 97.580 2769 47 5 1862 4628 696366732 696363982 0.000000e+00 4724.0
12 TraesCS4A01G340300 chr6B 96.392 2827 83 8 1774 4586 68671435 68674256 0.000000e+00 4638.0
13 TraesCS4A01G340300 chr6B 97.180 2376 56 8 1774 4146 49672954 49670587 0.000000e+00 4006.0
14 TraesCS4A01G340300 chr6B 97.482 2065 49 3 2561 4623 692809074 692811137 0.000000e+00 3522.0
15 TraesCS4A01G340300 chr6B 97.615 1761 34 6 63 1819 696368497 696366741 0.000000e+00 3013.0
16 TraesCS4A01G340300 chr6B 96.139 1839 52 8 2796 4630 38965005 38966828 0.000000e+00 2985.0
17 TraesCS4A01G340300 chr6B 97.735 1148 20 3 63 1206 692807125 692808270 0.000000e+00 1971.0
18 TraesCS4A01G340300 chr6B 94.857 1186 42 6 63 1246 68670273 68671441 0.000000e+00 1834.0
19 TraesCS4A01G340300 chr6B 94.398 1196 33 16 63 1246 38963243 38964416 0.000000e+00 1807.0
20 TraesCS4A01G340300 chr6B 96.694 726 14 3 1271 1988 692808352 692809075 0.000000e+00 1199.0
21 TraesCS4A01G340300 chr6B 100.000 65 0 0 1 65 38963043 38963107 2.360000e-23 121.0
22 TraesCS4A01G340300 chr6B 98.485 66 1 0 1 66 49693782 49693717 3.060000e-22 117.0
23 TraesCS4A01G340300 chr6B 98.485 66 1 0 1 66 68670076 68670141 3.060000e-22 117.0
24 TraesCS4A01G340300 chr6B 98.485 66 1 0 1 66 692806924 692806989 3.060000e-22 117.0
25 TraesCS4A01G340300 chr6A 93.715 2880 111 25 1774 4630 537821450 537824282 0.000000e+00 4252.0
26 TraesCS4A01G340300 chr6A 94.396 2427 91 15 1774 4180 115972651 115970250 0.000000e+00 3687.0
27 TraesCS4A01G340300 chr6A 93.089 1201 60 11 63 1246 537820262 537821456 0.000000e+00 1736.0
28 TraesCS4A01G340300 chr6A 91.438 1203 58 23 63 1246 115973821 115972645 0.000000e+00 1609.0
29 TraesCS4A01G340300 chr6A 83.265 245 35 5 63 304 49808997 49809238 2.260000e-53 220.0
30 TraesCS4A01G340300 chr7B 93.518 2854 117 32 1774 4613 707279219 707276420 0.000000e+00 4183.0
31 TraesCS4A01G340300 chr5B 98.548 2273 28 4 1 2270 649834984 649832714 0.000000e+00 4010.0
32 TraesCS4A01G340300 chr5B 98.128 1977 33 3 2657 4630 649832719 649830744 0.000000e+00 3443.0
33 TraesCS4A01G340300 chr5B 98.543 1579 21 2 3053 4630 684053714 684055291 0.000000e+00 2787.0
34 TraesCS4A01G340300 chr5B 86.511 556 46 13 398 944 527523204 527523739 6.970000e-163 584.0
35 TraesCS4A01G340300 chr5B 92.708 96 6 1 1434 1529 471283178 471283084 2.350000e-28 137.0
36 TraesCS4A01G340300 chr7A 96.804 2065 41 4 2567 4630 552980325 552978285 0.000000e+00 3424.0
37 TraesCS4A01G340300 chr7A 95.038 1955 64 18 63 1988 552982280 552980330 0.000000e+00 3042.0
38 TraesCS4A01G340300 chr7A 100.000 66 0 0 1 66 552982481 552982416 6.570000e-24 122.0
39 TraesCS4A01G340300 chr2A 90.879 1206 64 26 63 1246 707274425 707273244 0.000000e+00 1576.0
40 TraesCS4A01G340300 chr2A 77.919 394 27 36 1434 1776 774919117 774918733 1.780000e-44 191.0
41 TraesCS4A01G340300 chr2A 77.778 396 24 37 1434 1774 7746052 7745666 8.260000e-43 185.0
42 TraesCS4A01G340300 chr2A 77.157 394 28 37 1434 1774 723580845 723581229 6.430000e-39 172.0
43 TraesCS4A01G340300 chr2D 91.202 682 53 4 568 1246 72859797 72859120 0.000000e+00 920.0
44 TraesCS4A01G340300 chr4D 89.721 574 44 8 527 1098 294034304 294033744 0.000000e+00 719.0
45 TraesCS4A01G340300 chr4D 89.024 574 45 9 527 1098 294057521 294056964 0.000000e+00 695.0
46 TraesCS4A01G340300 chr4D 92.157 153 7 1 1094 1246 294033264 294033117 1.360000e-50 211.0
47 TraesCS4A01G340300 chr4D 92.381 105 8 0 1774 1878 294033123 294033019 3.010000e-32 150.0
48 TraesCS4A01G340300 chr5D 93.069 202 14 0 4631 4832 547422704 547422503 3.660000e-76 296.0
49 TraesCS4A01G340300 chr5A 94.792 96 5 0 1434 1529 17477377 17477472 3.010000e-32 150.0
50 TraesCS4A01G340300 chr5A 93.902 82 4 1 1552 1632 17477531 17477612 6.570000e-24 122.0
51 TraesCS4A01G340300 chr5A 87.850 107 7 2 1669 1775 17478475 17478575 2.360000e-23 121.0
52 TraesCS4A01G340300 chr2B 88.462 104 6 3 1669 1772 726596206 726596303 2.360000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G340300 chr4A 621505611 621510442 4831 False 8924.000000 8924 100.000000 1 4832 1 chr4A.!!$F1 4831
1 TraesCS4A01G340300 chr4A 578169491 578170874 1383 True 802.200000 1522 89.440500 1 1246 2 chr4A.!!$R1 1245
2 TraesCS4A01G340300 chr3B 756241891 756246487 4596 True 7978.000000 7978 97.885000 1 4631 1 chr3B.!!$R1 4630
3 TraesCS4A01G340300 chr1A 589458885 589463322 4437 False 7838.000000 7838 98.538000 1 4440 1 chr1A.!!$F1 4439
4 TraesCS4A01G340300 chr1A 514559572 514563413 3841 False 1896.900000 3868 94.113333 15 4235 3 chr1A.!!$F2 4220
5 TraesCS4A01G340300 chr6B 49670587 49672954 2367 True 4006.000000 4006 97.180000 1774 4146 1 chr6B.!!$R1 2372
6 TraesCS4A01G340300 chr6B 696363982 696368497 4515 True 3868.500000 4724 97.597500 63 4628 2 chr6B.!!$R3 4565
7 TraesCS4A01G340300 chr6B 68670076 68674256 4180 False 2196.333333 4638 96.578000 1 4586 3 chr6B.!!$F2 4585
8 TraesCS4A01G340300 chr6B 692806924 692811137 4213 False 1702.250000 3522 97.599000 1 4623 4 chr6B.!!$F3 4622
9 TraesCS4A01G340300 chr6B 38963043 38966828 3785 False 1637.666667 2985 96.845667 1 4630 3 chr6B.!!$F1 4629
10 TraesCS4A01G340300 chr6A 537820262 537824282 4020 False 2994.000000 4252 93.402000 63 4630 2 chr6A.!!$F2 4567
11 TraesCS4A01G340300 chr6A 115970250 115973821 3571 True 2648.000000 3687 92.917000 63 4180 2 chr6A.!!$R1 4117
12 TraesCS4A01G340300 chr7B 707276420 707279219 2799 True 4183.000000 4183 93.518000 1774 4613 1 chr7B.!!$R1 2839
13 TraesCS4A01G340300 chr5B 649830744 649834984 4240 True 3726.500000 4010 98.338000 1 4630 2 chr5B.!!$R2 4629
14 TraesCS4A01G340300 chr5B 684053714 684055291 1577 False 2787.000000 2787 98.543000 3053 4630 1 chr5B.!!$F2 1577
15 TraesCS4A01G340300 chr5B 527523204 527523739 535 False 584.000000 584 86.511000 398 944 1 chr5B.!!$F1 546
16 TraesCS4A01G340300 chr7A 552978285 552982481 4196 True 2196.000000 3424 97.280667 1 4630 3 chr7A.!!$R1 4629
17 TraesCS4A01G340300 chr2A 707273244 707274425 1181 True 1576.000000 1576 90.879000 63 1246 1 chr2A.!!$R2 1183
18 TraesCS4A01G340300 chr2D 72859120 72859797 677 True 920.000000 920 91.202000 568 1246 1 chr2D.!!$R1 678
19 TraesCS4A01G340300 chr4D 294056964 294057521 557 True 695.000000 695 89.024000 527 1098 1 chr4D.!!$R1 571
20 TraesCS4A01G340300 chr4D 294033019 294034304 1285 True 360.000000 719 91.419667 527 1878 3 chr4D.!!$R2 1351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 851 1.209504 CACCTCGACCTCTCTCTCTCT 59.790 57.143 0.00 0.00 0.00 3.10 F
1244 2098 0.116342 TCCACTGCTGGGTCTTCCTA 59.884 55.000 0.00 0.00 38.25 2.94 F
1252 2106 0.178873 TGGGTCTTCCTAGGCTTGGT 60.179 55.000 14.66 0.00 36.20 3.67 F
1253 2107 0.253327 GGGTCTTCCTAGGCTTGGTG 59.747 60.000 14.66 9.18 0.00 4.17 F
1255 2109 0.324943 GTCTTCCTAGGCTTGGTGCA 59.675 55.000 14.66 0.18 45.15 4.57 F
3284 5268 0.040157 TTGCTCTGTTTCATGCGCAC 60.040 50.000 14.90 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2354 4318 1.000359 GGGGCTGGGCTTACACATT 60.000 57.895 0.00 0.0 0.00 2.71 R
3078 5062 1.346068 TGGTTGTCGTCATCATCCACA 59.654 47.619 0.00 0.0 32.06 4.17 R
3177 5161 2.503158 TCGATGCCGAACACGACG 60.503 61.111 0.00 0.0 42.51 5.12 R
3284 5268 2.507339 AGCACAAACAAAATCACCCG 57.493 45.000 0.00 0.0 0.00 5.28 R
3314 5298 4.462133 AGGAATGATCTTTCTCATGGCAG 58.538 43.478 17.92 0.0 36.03 4.85 R
4702 6746 0.034089 GTAAGCCCACCCTGATTGCT 60.034 55.000 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 355 1.749638 CGCCGGAGAGACTGTAGGT 60.750 63.158 5.05 0.00 0.00 3.08
516 851 1.209504 CACCTCGACCTCTCTCTCTCT 59.790 57.143 0.00 0.00 0.00 3.10
517 852 1.485066 ACCTCGACCTCTCTCTCTCTC 59.515 57.143 0.00 0.00 0.00 3.20
533 868 4.377760 TCCCCGCGACCCTTCTCT 62.378 66.667 8.23 0.00 0.00 3.10
660 1025 1.517257 CCGAGCAGATTCGTCGCTT 60.517 57.895 0.00 0.00 38.88 4.68
1242 2096 1.298014 CTCCACTGCTGGGTCTTCC 59.702 63.158 0.00 0.00 38.25 3.46
1243 2097 1.152030 TCCACTGCTGGGTCTTCCT 60.152 57.895 0.00 0.00 38.25 3.36
1244 2098 0.116342 TCCACTGCTGGGTCTTCCTA 59.884 55.000 0.00 0.00 38.25 2.94
1245 2099 0.539051 CCACTGCTGGGTCTTCCTAG 59.461 60.000 0.00 0.00 43.89 3.02
1246 2100 0.539051 CACTGCTGGGTCTTCCTAGG 59.461 60.000 0.82 0.82 41.76 3.02
1247 2101 1.268283 ACTGCTGGGTCTTCCTAGGC 61.268 60.000 2.96 0.00 41.76 3.93
1248 2102 0.980231 CTGCTGGGTCTTCCTAGGCT 60.980 60.000 2.96 0.00 41.76 4.58
1249 2103 0.547712 TGCTGGGTCTTCCTAGGCTT 60.548 55.000 2.96 0.00 41.76 4.35
1251 2105 0.543749 CTGGGTCTTCCTAGGCTTGG 59.456 60.000 8.84 8.84 38.45 3.61
1252 2106 0.178873 TGGGTCTTCCTAGGCTTGGT 60.179 55.000 14.66 0.00 36.20 3.67
1253 2107 0.253327 GGGTCTTCCTAGGCTTGGTG 59.747 60.000 14.66 9.18 0.00 4.17
1255 2109 0.324943 GTCTTCCTAGGCTTGGTGCA 59.675 55.000 14.66 0.18 45.15 4.57
1257 2111 0.615331 CTTCCTAGGCTTGGTGCAGA 59.385 55.000 14.66 0.00 45.15 4.26
1258 2112 1.211457 CTTCCTAGGCTTGGTGCAGAT 59.789 52.381 14.66 0.00 45.15 2.90
1260 2114 1.635487 TCCTAGGCTTGGTGCAGATTT 59.365 47.619 14.66 0.00 45.15 2.17
1261 2115 2.041620 TCCTAGGCTTGGTGCAGATTTT 59.958 45.455 14.66 0.00 45.15 1.82
1263 2117 3.629398 CCTAGGCTTGGTGCAGATTTTAG 59.371 47.826 6.84 0.00 45.15 1.85
1264 2118 3.439857 AGGCTTGGTGCAGATTTTAGA 57.560 42.857 0.00 0.00 45.15 2.10
1265 2119 3.973425 AGGCTTGGTGCAGATTTTAGAT 58.027 40.909 0.00 0.00 45.15 1.98
1266 2120 3.698040 AGGCTTGGTGCAGATTTTAGATG 59.302 43.478 0.00 0.00 45.15 2.90
1267 2121 3.442100 GCTTGGTGCAGATTTTAGATGC 58.558 45.455 0.00 0.00 42.31 3.91
1312 2183 1.065491 TGTTCTTGTCACCACTGCTGT 60.065 47.619 0.00 0.00 0.00 4.40
1872 3825 3.295397 CGATCGATTGAAACTTGTTTGCG 59.705 43.478 10.26 3.11 0.00 4.85
2281 4245 2.116238 CCGGATCCAGGAAGGTCTTTA 58.884 52.381 13.41 0.00 39.02 1.85
2354 4318 3.008375 CAGATCAACCTCCTTCTCAACCA 59.992 47.826 0.00 0.00 0.00 3.67
2478 4445 3.455910 TCCATTACTACCATCTTGCTGCT 59.544 43.478 0.00 0.00 0.00 4.24
2479 4446 3.812053 CCATTACTACCATCTTGCTGCTC 59.188 47.826 0.00 0.00 0.00 4.26
2505 4472 5.430886 TCGATATCCATGCCCTAATTCATG 58.569 41.667 0.00 0.00 39.67 3.07
2938 4922 1.478510 ACTAAGCTAGCTCACGCACAT 59.521 47.619 19.65 1.64 39.10 3.21
2977 4961 7.060059 CGATTGATTTCTGTAGATACTAGCACG 59.940 40.741 0.00 0.00 0.00 5.34
3284 5268 0.040157 TTGCTCTGTTTCATGCGCAC 60.040 50.000 14.90 0.00 0.00 5.34
3314 5298 1.202132 TGTTTGTGCTTGTCGTGCTTC 60.202 47.619 0.00 0.00 0.00 3.86
3428 5412 2.742589 GTTGGTTACTGCAGCTAGGTTC 59.257 50.000 15.27 0.00 0.00 3.62
3523 5521 5.124645 ACTCCTGTACTAGTAGTTCATCCG 58.875 45.833 8.40 3.60 0.00 4.18
3618 5617 9.558648 CGAACATCAGATCATTTACAATGAAAA 57.441 29.630 3.36 0.00 0.00 2.29
4587 6631 0.179018 GACGGGAAATGGCCTATGCT 60.179 55.000 3.32 0.00 37.74 3.79
4623 6667 2.435693 GGCATAGGTGGCGAGTCCT 61.436 63.158 0.00 0.00 41.35 3.85
4631 6675 1.982395 TGGCGAGTCCTGTAGTGGG 60.982 63.158 0.00 0.00 35.26 4.61
4632 6676 1.681327 GGCGAGTCCTGTAGTGGGA 60.681 63.158 0.00 0.00 0.00 4.37
4633 6677 1.043673 GGCGAGTCCTGTAGTGGGAT 61.044 60.000 0.00 0.00 35.15 3.85
4634 6678 0.103208 GCGAGTCCTGTAGTGGGATG 59.897 60.000 0.00 0.00 35.15 3.51
4635 6679 0.747255 CGAGTCCTGTAGTGGGATGG 59.253 60.000 0.00 0.00 35.15 3.51
4636 6680 0.466124 GAGTCCTGTAGTGGGATGGC 59.534 60.000 0.00 0.00 35.15 4.40
4637 6681 0.983378 AGTCCTGTAGTGGGATGGCC 60.983 60.000 0.00 0.00 35.15 5.36
4638 6682 0.983378 GTCCTGTAGTGGGATGGCCT 60.983 60.000 3.32 0.00 35.15 5.19
4639 6683 0.691078 TCCTGTAGTGGGATGGCCTC 60.691 60.000 3.32 0.00 0.00 4.70
4640 6684 1.700042 CCTGTAGTGGGATGGCCTCC 61.700 65.000 3.32 8.58 44.11 4.30
4641 6685 0.692419 CTGTAGTGGGATGGCCTCCT 60.692 60.000 17.51 4.57 44.28 3.69
4642 6686 0.639943 TGTAGTGGGATGGCCTCCTA 59.360 55.000 17.51 11.10 44.28 2.94
4645 6689 4.728780 TGGGATGGCCTCCTACTC 57.271 61.111 17.51 5.20 44.28 2.59
4646 6690 2.027802 TGGGATGGCCTCCTACTCT 58.972 57.895 17.51 0.00 44.28 3.24
4647 6691 1.241485 TGGGATGGCCTCCTACTCTA 58.759 55.000 17.51 0.00 44.28 2.43
4648 6692 1.133136 TGGGATGGCCTCCTACTCTAC 60.133 57.143 17.51 3.79 44.28 2.59
4649 6693 1.249407 GGATGGCCTCCTACTCTACG 58.751 60.000 3.32 0.00 41.29 3.51
4650 6694 1.249407 GATGGCCTCCTACTCTACGG 58.751 60.000 3.32 0.00 0.00 4.02
4651 6695 0.828343 ATGGCCTCCTACTCTACGGC 60.828 60.000 3.32 0.00 39.98 5.68
4652 6696 3.445888 GCCTCCTACTCTACGGCC 58.554 66.667 0.00 0.00 34.75 6.13
4653 6697 1.152715 GCCTCCTACTCTACGGCCT 60.153 63.158 0.00 0.00 34.75 5.19
4654 6698 0.756070 GCCTCCTACTCTACGGCCTT 60.756 60.000 0.00 0.00 34.75 4.35
4655 6699 1.320507 CCTCCTACTCTACGGCCTTC 58.679 60.000 0.00 0.00 0.00 3.46
4656 6700 1.133730 CCTCCTACTCTACGGCCTTCT 60.134 57.143 0.00 0.00 0.00 2.85
4657 6701 2.657143 CTCCTACTCTACGGCCTTCTT 58.343 52.381 0.00 0.00 0.00 2.52
4658 6702 2.619646 CTCCTACTCTACGGCCTTCTTC 59.380 54.545 0.00 0.00 0.00 2.87
4659 6703 2.025605 TCCTACTCTACGGCCTTCTTCA 60.026 50.000 0.00 0.00 0.00 3.02
4660 6704 2.758979 CCTACTCTACGGCCTTCTTCAA 59.241 50.000 0.00 0.00 0.00 2.69
4661 6705 2.745515 ACTCTACGGCCTTCTTCAAC 57.254 50.000 0.00 0.00 0.00 3.18
4662 6706 1.067776 ACTCTACGGCCTTCTTCAACG 60.068 52.381 0.00 0.00 0.00 4.10
4663 6707 0.245539 TCTACGGCCTTCTTCAACGG 59.754 55.000 0.00 0.00 0.00 4.44
4664 6708 0.245539 CTACGGCCTTCTTCAACGGA 59.754 55.000 0.00 0.00 0.00 4.69
4665 6709 0.680618 TACGGCCTTCTTCAACGGAA 59.319 50.000 0.00 0.00 0.00 4.30
4672 6716 3.987404 CTTCAACGGAAGGGCTGG 58.013 61.111 0.00 0.00 45.52 4.85
4673 6717 1.374947 CTTCAACGGAAGGGCTGGA 59.625 57.895 0.00 0.00 45.52 3.86
4674 6718 0.955919 CTTCAACGGAAGGGCTGGAC 60.956 60.000 0.00 0.00 45.52 4.02
4675 6719 2.725203 TTCAACGGAAGGGCTGGACG 62.725 60.000 0.00 0.00 0.00 4.79
4676 6720 4.699522 AACGGAAGGGCTGGACGC 62.700 66.667 0.00 0.00 38.13 5.19
4694 6738 3.285215 CATGCCGGCATGCTCCTC 61.285 66.667 46.27 9.79 45.71 3.71
4695 6739 4.575973 ATGCCGGCATGCTCCTCC 62.576 66.667 40.10 0.49 35.03 4.30
4697 6741 4.925861 GCCGGCATGCTCCTCCTC 62.926 72.222 24.80 0.00 0.00 3.71
4698 6742 4.598894 CCGGCATGCTCCTCCTCG 62.599 72.222 18.92 10.42 0.00 4.63
4699 6743 3.531207 CGGCATGCTCCTCCTCGA 61.531 66.667 18.92 0.00 0.00 4.04
4700 6744 2.903357 GGCATGCTCCTCCTCGAA 59.097 61.111 18.92 0.00 0.00 3.71
4701 6745 1.221840 GGCATGCTCCTCCTCGAAA 59.778 57.895 18.92 0.00 0.00 3.46
4702 6746 0.392998 GGCATGCTCCTCCTCGAAAA 60.393 55.000 18.92 0.00 0.00 2.29
4703 6747 1.012841 GCATGCTCCTCCTCGAAAAG 58.987 55.000 11.37 0.00 0.00 2.27
4704 6748 1.012841 CATGCTCCTCCTCGAAAAGC 58.987 55.000 0.00 0.00 0.00 3.51
4705 6749 0.615331 ATGCTCCTCCTCGAAAAGCA 59.385 50.000 8.63 8.63 46.04 3.91
4706 6750 0.396435 TGCTCCTCCTCGAAAAGCAA 59.604 50.000 4.88 0.00 39.83 3.91
4707 6751 1.003580 TGCTCCTCCTCGAAAAGCAAT 59.996 47.619 4.88 0.00 39.83 3.56
4708 6752 1.668237 GCTCCTCCTCGAAAAGCAATC 59.332 52.381 0.00 0.00 33.21 2.67
4709 6753 2.936993 GCTCCTCCTCGAAAAGCAATCA 60.937 50.000 0.00 0.00 33.21 2.57
4710 6754 2.935201 CTCCTCCTCGAAAAGCAATCAG 59.065 50.000 0.00 0.00 0.00 2.90
4711 6755 2.012673 CCTCCTCGAAAAGCAATCAGG 58.987 52.381 0.00 0.00 0.00 3.86
4712 6756 2.012673 CTCCTCGAAAAGCAATCAGGG 58.987 52.381 0.00 0.00 0.00 4.45
4713 6757 1.351017 TCCTCGAAAAGCAATCAGGGT 59.649 47.619 0.00 0.00 0.00 4.34
4714 6758 1.470098 CCTCGAAAAGCAATCAGGGTG 59.530 52.381 0.00 0.00 0.00 4.61
4715 6759 1.470098 CTCGAAAAGCAATCAGGGTGG 59.530 52.381 0.00 0.00 0.00 4.61
4716 6760 0.527565 CGAAAAGCAATCAGGGTGGG 59.472 55.000 0.00 0.00 0.00 4.61
4717 6761 0.247460 GAAAAGCAATCAGGGTGGGC 59.753 55.000 0.00 0.00 0.00 5.36
4718 6762 0.178924 AAAAGCAATCAGGGTGGGCT 60.179 50.000 0.00 0.00 36.13 5.19
4719 6763 0.178924 AAAGCAATCAGGGTGGGCTT 60.179 50.000 0.00 0.00 45.92 4.35
4720 6764 0.704076 AAGCAATCAGGGTGGGCTTA 59.296 50.000 0.00 0.00 42.51 3.09
4721 6765 0.034089 AGCAATCAGGGTGGGCTTAC 60.034 55.000 0.00 0.00 0.00 2.34
4722 6766 1.037579 GCAATCAGGGTGGGCTTACC 61.038 60.000 3.33 3.33 40.10 2.85
4723 6767 0.625849 CAATCAGGGTGGGCTTACCT 59.374 55.000 10.46 0.73 40.66 3.08
4725 6769 3.495729 CAGGGTGGGCTTACCTGT 58.504 61.111 11.84 0.00 45.21 4.00
4726 6770 1.002134 CAGGGTGGGCTTACCTGTG 60.002 63.158 11.84 6.78 45.21 3.66
4727 6771 2.361230 GGGTGGGCTTACCTGTGC 60.361 66.667 10.46 0.00 40.66 4.57
4728 6772 2.746277 GGTGGGCTTACCTGTGCG 60.746 66.667 4.55 0.00 41.11 5.34
4729 6773 2.345991 GTGGGCTTACCTGTGCGA 59.654 61.111 0.00 0.00 41.11 5.10
4730 6774 1.078426 GTGGGCTTACCTGTGCGAT 60.078 57.895 0.00 0.00 41.11 4.58
4731 6775 1.078497 TGGGCTTACCTGTGCGATG 60.078 57.895 0.00 0.00 41.11 3.84
4732 6776 2.472909 GGGCTTACCTGTGCGATGC 61.473 63.158 0.00 0.00 35.85 3.91
4733 6777 2.472909 GGCTTACCTGTGCGATGCC 61.473 63.158 0.00 0.00 0.00 4.40
4734 6778 1.745115 GCTTACCTGTGCGATGCCA 60.745 57.895 0.00 0.00 0.00 4.92
4735 6779 1.982073 GCTTACCTGTGCGATGCCAC 61.982 60.000 0.00 0.00 36.28 5.01
4736 6780 0.673333 CTTACCTGTGCGATGCCACA 60.673 55.000 0.00 0.00 42.99 4.17
4740 6784 2.046988 TGTGCGATGCCACAGGAG 60.047 61.111 0.00 0.00 40.55 3.69
4741 6785 3.503363 GTGCGATGCCACAGGAGC 61.503 66.667 0.00 0.00 35.80 4.70
4742 6786 4.783621 TGCGATGCCACAGGAGCC 62.784 66.667 0.00 0.00 0.00 4.70
4743 6787 4.783621 GCGATGCCACAGGAGCCA 62.784 66.667 0.00 0.00 0.00 4.75
4744 6788 2.191375 CGATGCCACAGGAGCCAT 59.809 61.111 0.00 0.00 0.00 4.40
4745 6789 1.452651 CGATGCCACAGGAGCCATT 60.453 57.895 0.00 0.00 0.00 3.16
4746 6790 1.721664 CGATGCCACAGGAGCCATTG 61.722 60.000 0.00 0.00 0.00 2.82
4747 6791 0.682209 GATGCCACAGGAGCCATTGT 60.682 55.000 0.00 0.00 0.00 2.71
4748 6792 0.682209 ATGCCACAGGAGCCATTGTC 60.682 55.000 0.00 0.00 0.00 3.18
4749 6793 1.303561 GCCACAGGAGCCATTGTCA 60.304 57.895 0.00 0.00 0.00 3.58
4750 6794 1.589716 GCCACAGGAGCCATTGTCAC 61.590 60.000 0.00 0.00 0.00 3.67
4751 6795 0.250858 CCACAGGAGCCATTGTCACA 60.251 55.000 0.00 0.00 0.00 3.58
4752 6796 1.615116 CCACAGGAGCCATTGTCACAT 60.615 52.381 0.00 0.00 0.00 3.21
4753 6797 1.471287 CACAGGAGCCATTGTCACATG 59.529 52.381 0.00 0.00 0.00 3.21
4754 6798 0.454600 CAGGAGCCATTGTCACATGC 59.545 55.000 0.00 0.00 0.00 4.06
4755 6799 0.682209 AGGAGCCATTGTCACATGCC 60.682 55.000 0.00 0.00 0.00 4.40
4756 6800 1.430632 GAGCCATTGTCACATGCCG 59.569 57.895 0.00 0.00 0.00 5.69
4757 6801 2.202650 GCCATTGTCACATGCCGC 60.203 61.111 0.00 0.00 0.00 6.53
4758 6802 2.491152 CCATTGTCACATGCCGCC 59.509 61.111 0.00 0.00 0.00 6.13
4759 6803 2.341875 CCATTGTCACATGCCGCCA 61.342 57.895 0.00 0.00 0.00 5.69
4760 6804 1.669049 CCATTGTCACATGCCGCCAT 61.669 55.000 0.00 0.00 0.00 4.40
4761 6805 0.173935 CATTGTCACATGCCGCCATT 59.826 50.000 0.00 0.00 0.00 3.16
4762 6806 0.896923 ATTGTCACATGCCGCCATTT 59.103 45.000 0.00 0.00 0.00 2.32
4763 6807 0.038435 TTGTCACATGCCGCCATTTG 60.038 50.000 0.00 0.00 31.84 2.32
4764 6808 0.892814 TGTCACATGCCGCCATTTGA 60.893 50.000 0.00 0.00 36.18 2.69
4765 6809 0.457035 GTCACATGCCGCCATTTGAT 59.543 50.000 0.00 0.00 39.55 2.57
4766 6810 1.675483 GTCACATGCCGCCATTTGATA 59.325 47.619 0.00 0.00 39.55 2.15
4767 6811 1.948834 TCACATGCCGCCATTTGATAG 59.051 47.619 0.00 0.00 34.23 2.08
4768 6812 1.948834 CACATGCCGCCATTTGATAGA 59.051 47.619 0.00 0.00 32.18 1.98
4769 6813 2.555325 CACATGCCGCCATTTGATAGAT 59.445 45.455 0.00 0.00 32.18 1.98
4770 6814 2.555325 ACATGCCGCCATTTGATAGATG 59.445 45.455 0.00 0.00 0.00 2.90
4771 6815 1.608055 TGCCGCCATTTGATAGATGG 58.392 50.000 0.00 0.00 45.52 3.51
4772 6816 0.883833 GCCGCCATTTGATAGATGGG 59.116 55.000 5.38 0.00 43.45 4.00
4776 6820 3.795688 GCCATTTGATAGATGGGGAGA 57.204 47.619 5.38 0.00 43.45 3.71
4777 6821 4.104383 GCCATTTGATAGATGGGGAGAA 57.896 45.455 5.38 0.00 43.45 2.87
4778 6822 4.077822 GCCATTTGATAGATGGGGAGAAG 58.922 47.826 5.38 0.00 43.45 2.85
4779 6823 4.202503 GCCATTTGATAGATGGGGAGAAGA 60.203 45.833 5.38 0.00 43.45 2.87
4780 6824 5.516238 GCCATTTGATAGATGGGGAGAAGAT 60.516 44.000 5.38 0.00 43.45 2.40
4781 6825 6.179040 CCATTTGATAGATGGGGAGAAGATC 58.821 44.000 0.00 0.00 40.30 2.75
4799 6843 2.969628 TCCTCGCTGGAAAAGAGATC 57.030 50.000 0.00 0.00 42.94 2.75
4800 6844 1.135139 TCCTCGCTGGAAAAGAGATCG 59.865 52.381 0.00 0.00 42.94 3.69
4801 6845 1.134965 CCTCGCTGGAAAAGAGATCGT 60.135 52.381 0.00 0.00 38.35 3.73
4802 6846 2.611518 CTCGCTGGAAAAGAGATCGTT 58.388 47.619 0.00 0.00 33.88 3.85
4803 6847 3.428999 CCTCGCTGGAAAAGAGATCGTTA 60.429 47.826 0.00 0.00 38.35 3.18
4804 6848 4.363999 CTCGCTGGAAAAGAGATCGTTAT 58.636 43.478 0.00 0.00 33.88 1.89
4805 6849 5.507482 CCTCGCTGGAAAAGAGATCGTTATA 60.507 44.000 0.00 0.00 38.35 0.98
4806 6850 5.520632 TCGCTGGAAAAGAGATCGTTATAG 58.479 41.667 0.00 0.00 28.57 1.31
4807 6851 5.298527 TCGCTGGAAAAGAGATCGTTATAGA 59.701 40.000 0.00 0.00 28.57 1.98
4808 6852 6.016192 TCGCTGGAAAAGAGATCGTTATAGAT 60.016 38.462 0.00 0.00 28.57 1.98
4809 6853 6.088749 CGCTGGAAAAGAGATCGTTATAGATG 59.911 42.308 0.00 0.00 0.00 2.90
4810 6854 7.148641 GCTGGAAAAGAGATCGTTATAGATGA 58.851 38.462 0.00 0.00 0.00 2.92
4811 6855 7.115663 GCTGGAAAAGAGATCGTTATAGATGAC 59.884 40.741 0.00 0.00 0.00 3.06
4812 6856 7.434492 TGGAAAAGAGATCGTTATAGATGACC 58.566 38.462 0.00 0.00 0.00 4.02
4813 6857 6.583050 GGAAAAGAGATCGTTATAGATGACCG 59.417 42.308 0.00 0.00 0.00 4.79
4814 6858 6.636562 AAAGAGATCGTTATAGATGACCGT 57.363 37.500 0.00 0.00 0.00 4.83
4815 6859 5.614923 AGAGATCGTTATAGATGACCGTG 57.385 43.478 0.00 0.00 0.00 4.94
4816 6860 4.083217 AGAGATCGTTATAGATGACCGTGC 60.083 45.833 0.00 0.00 0.00 5.34
4817 6861 3.821600 AGATCGTTATAGATGACCGTGCT 59.178 43.478 0.00 0.00 0.00 4.40
4818 6862 5.001874 AGATCGTTATAGATGACCGTGCTA 58.998 41.667 0.00 0.00 0.00 3.49
4819 6863 5.648526 AGATCGTTATAGATGACCGTGCTAT 59.351 40.000 0.00 0.00 0.00 2.97
4820 6864 5.292671 TCGTTATAGATGACCGTGCTATC 57.707 43.478 0.00 0.00 0.00 2.08
4821 6865 5.001874 TCGTTATAGATGACCGTGCTATCT 58.998 41.667 0.00 0.00 35.49 1.98
4822 6866 5.121925 TCGTTATAGATGACCGTGCTATCTC 59.878 44.000 0.00 0.00 33.51 2.75
4823 6867 5.642686 GTTATAGATGACCGTGCTATCTCC 58.357 45.833 0.00 0.00 33.51 3.71
4824 6868 0.955178 AGATGACCGTGCTATCTCCG 59.045 55.000 0.00 0.00 0.00 4.63
4825 6869 0.669077 GATGACCGTGCTATCTCCGT 59.331 55.000 0.00 0.00 0.00 4.69
4826 6870 0.669077 ATGACCGTGCTATCTCCGTC 59.331 55.000 0.00 0.00 0.00 4.79
4827 6871 1.009900 GACCGTGCTATCTCCGTCG 60.010 63.158 0.00 0.00 0.00 5.12
4828 6872 2.331805 CCGTGCTATCTCCGTCGG 59.668 66.667 4.39 4.39 0.00 4.79
4829 6873 2.331805 CGTGCTATCTCCGTCGGG 59.668 66.667 12.29 2.17 0.00 5.14
4830 6874 2.728817 GTGCTATCTCCGTCGGGG 59.271 66.667 12.29 8.52 37.02 5.73
4831 6875 2.125961 GTGCTATCTCCGTCGGGGT 61.126 63.158 11.82 1.01 37.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
516 851 4.377760 AGAGAAGGGTCGCGGGGA 62.378 66.667 6.13 0.00 0.00 4.81
517 852 4.148825 CAGAGAAGGGTCGCGGGG 62.149 72.222 6.13 0.00 0.00 5.73
660 1025 2.034532 TGACCGGTAGAGGACGCA 59.965 61.111 7.34 0.00 34.73 5.24
1242 2096 4.517285 TCTAAAATCTGCACCAAGCCTAG 58.483 43.478 0.00 0.00 44.83 3.02
1243 2097 4.568072 TCTAAAATCTGCACCAAGCCTA 57.432 40.909 0.00 0.00 44.83 3.93
1244 2098 3.439857 TCTAAAATCTGCACCAAGCCT 57.560 42.857 0.00 0.00 44.83 4.58
1245 2099 3.736126 GCATCTAAAATCTGCACCAAGCC 60.736 47.826 0.00 0.00 44.83 4.35
1246 2100 3.119388 TGCATCTAAAATCTGCACCAAGC 60.119 43.478 0.00 0.00 40.75 4.01
1247 2101 4.397103 TCTGCATCTAAAATCTGCACCAAG 59.603 41.667 0.00 0.00 40.75 3.61
1248 2102 4.334552 TCTGCATCTAAAATCTGCACCAA 58.665 39.130 0.00 0.00 40.75 3.67
1249 2103 3.954200 TCTGCATCTAAAATCTGCACCA 58.046 40.909 0.00 0.00 40.75 4.17
1251 2105 4.738740 GCAATCTGCATCTAAAATCTGCAC 59.261 41.667 0.00 0.00 44.26 4.57
1252 2106 4.928601 GCAATCTGCATCTAAAATCTGCA 58.071 39.130 0.00 0.00 44.26 4.41
1312 2183 3.133691 CAAGCAGACAAGCAGTGACTAA 58.866 45.455 0.00 0.00 36.85 2.24
1349 2220 5.178252 CAGAACATCTCAACTCGTCACAATT 59.822 40.000 0.00 0.00 0.00 2.32
2354 4318 1.000359 GGGGCTGGGCTTACACATT 60.000 57.895 0.00 0.00 0.00 2.71
2479 4446 5.105187 TGAATTAGGGCATGGATATCGAGAG 60.105 44.000 0.00 0.00 0.00 3.20
2505 4472 4.018484 AGCATCTAAGAATGGATCAGGC 57.982 45.455 0.00 0.00 0.00 4.85
2938 4922 3.949842 ATCAATCGAGCTAGCTATGCA 57.050 42.857 19.38 1.75 0.00 3.96
3078 5062 1.346068 TGGTTGTCGTCATCATCCACA 59.654 47.619 0.00 0.00 32.06 4.17
3177 5161 2.503158 TCGATGCCGAACACGACG 60.503 61.111 0.00 0.00 42.51 5.12
3284 5268 2.507339 AGCACAAACAAAATCACCCG 57.493 45.000 0.00 0.00 0.00 5.28
3314 5298 4.462133 AGGAATGATCTTTCTCATGGCAG 58.538 43.478 17.92 0.00 36.03 4.85
3428 5412 6.560253 AGATTAAACACCAACAGCTAACAG 57.440 37.500 0.00 0.00 0.00 3.16
3523 5521 6.357367 ACTGGGAAGGATCAATTACACATAC 58.643 40.000 0.00 0.00 0.00 2.39
3559 5557 9.935241 ATAGCTGATACAATACGATTTCTTCAT 57.065 29.630 0.00 0.00 0.00 2.57
3570 5568 4.143242 CGCACTGCATAGCTGATACAATAC 60.143 45.833 0.00 0.00 0.00 1.89
4623 6667 4.053025 AGTAGGAGGCCATCCCACTACA 62.053 54.545 16.64 0.00 46.87 2.74
4631 6675 1.249407 CCGTAGAGTAGGAGGCCATC 58.751 60.000 5.01 0.00 0.00 3.51
4632 6676 0.828343 GCCGTAGAGTAGGAGGCCAT 60.828 60.000 5.01 0.00 41.81 4.40
4633 6677 1.455217 GCCGTAGAGTAGGAGGCCA 60.455 63.158 5.01 0.00 41.81 5.36
4634 6678 3.445888 GCCGTAGAGTAGGAGGCC 58.554 66.667 0.00 0.00 41.81 5.19
4635 6679 0.756070 AAGGCCGTAGAGTAGGAGGC 60.756 60.000 0.00 0.00 46.51 4.70
4636 6680 1.133730 AGAAGGCCGTAGAGTAGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
4637 6681 2.351706 AGAAGGCCGTAGAGTAGGAG 57.648 55.000 0.00 0.00 0.00 3.69
4638 6682 2.025605 TGAAGAAGGCCGTAGAGTAGGA 60.026 50.000 0.00 0.00 0.00 2.94
4639 6683 2.376109 TGAAGAAGGCCGTAGAGTAGG 58.624 52.381 0.00 0.00 0.00 3.18
4640 6684 3.731264 CGTTGAAGAAGGCCGTAGAGTAG 60.731 52.174 0.00 0.00 0.00 2.57
4641 6685 2.163010 CGTTGAAGAAGGCCGTAGAGTA 59.837 50.000 0.00 0.00 0.00 2.59
4642 6686 1.067776 CGTTGAAGAAGGCCGTAGAGT 60.068 52.381 0.00 0.00 0.00 3.24
4643 6687 1.630148 CGTTGAAGAAGGCCGTAGAG 58.370 55.000 0.00 0.00 0.00 2.43
4644 6688 0.245539 CCGTTGAAGAAGGCCGTAGA 59.754 55.000 0.00 0.00 0.00 2.59
4645 6689 0.245539 TCCGTTGAAGAAGGCCGTAG 59.754 55.000 0.00 0.00 0.00 3.51
4646 6690 0.680618 TTCCGTTGAAGAAGGCCGTA 59.319 50.000 0.00 0.00 0.00 4.02
4647 6691 1.448497 TTCCGTTGAAGAAGGCCGT 59.552 52.632 0.00 0.00 0.00 5.68
4648 6692 4.371975 TTCCGTTGAAGAAGGCCG 57.628 55.556 0.00 0.00 0.00 6.13
4655 6699 0.955919 GTCCAGCCCTTCCGTTGAAG 60.956 60.000 0.00 0.00 46.29 3.02
4656 6700 1.072505 GTCCAGCCCTTCCGTTGAA 59.927 57.895 0.00 0.00 0.00 2.69
4657 6701 2.747686 GTCCAGCCCTTCCGTTGA 59.252 61.111 0.00 0.00 0.00 3.18
4658 6702 2.742372 CGTCCAGCCCTTCCGTTG 60.742 66.667 0.00 0.00 0.00 4.10
4659 6703 4.699522 GCGTCCAGCCCTTCCGTT 62.700 66.667 0.00 0.00 40.81 4.44
4678 6722 4.575973 GGAGGAGCATGCCGGCAT 62.576 66.667 36.10 36.10 37.08 4.40
4680 6724 4.925861 GAGGAGGAGCATGCCGGC 62.926 72.222 22.73 22.73 0.00 6.13
4681 6725 4.598894 CGAGGAGGAGCATGCCGG 62.599 72.222 15.66 0.00 0.00 6.13
4682 6726 2.578163 TTTCGAGGAGGAGCATGCCG 62.578 60.000 15.66 9.07 0.00 5.69
4683 6727 0.392998 TTTTCGAGGAGGAGCATGCC 60.393 55.000 15.66 5.80 0.00 4.40
4684 6728 1.012841 CTTTTCGAGGAGGAGCATGC 58.987 55.000 10.51 10.51 0.00 4.06
4685 6729 1.012841 GCTTTTCGAGGAGGAGCATG 58.987 55.000 0.00 0.00 33.68 4.06
4686 6730 0.615331 TGCTTTTCGAGGAGGAGCAT 59.385 50.000 6.28 0.00 38.33 3.79
4687 6731 0.396435 TTGCTTTTCGAGGAGGAGCA 59.604 50.000 6.28 6.28 41.19 4.26
4688 6732 1.668237 GATTGCTTTTCGAGGAGGAGC 59.332 52.381 0.00 0.00 0.00 4.70
4689 6733 2.935201 CTGATTGCTTTTCGAGGAGGAG 59.065 50.000 0.00 0.00 0.00 3.69
4690 6734 2.355108 CCTGATTGCTTTTCGAGGAGGA 60.355 50.000 0.00 0.00 0.00 3.71
4691 6735 2.012673 CCTGATTGCTTTTCGAGGAGG 58.987 52.381 0.00 0.00 0.00 4.30
4692 6736 2.012673 CCCTGATTGCTTTTCGAGGAG 58.987 52.381 0.00 0.00 0.00 3.69
4693 6737 1.351017 ACCCTGATTGCTTTTCGAGGA 59.649 47.619 0.00 0.00 0.00 3.71
4694 6738 1.470098 CACCCTGATTGCTTTTCGAGG 59.530 52.381 0.00 0.00 0.00 4.63
4695 6739 1.470098 CCACCCTGATTGCTTTTCGAG 59.530 52.381 0.00 0.00 0.00 4.04
4696 6740 1.533625 CCACCCTGATTGCTTTTCGA 58.466 50.000 0.00 0.00 0.00 3.71
4697 6741 0.527565 CCCACCCTGATTGCTTTTCG 59.472 55.000 0.00 0.00 0.00 3.46
4698 6742 0.247460 GCCCACCCTGATTGCTTTTC 59.753 55.000 0.00 0.00 0.00 2.29
4699 6743 0.178924 AGCCCACCCTGATTGCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
4700 6744 0.178924 AAGCCCACCCTGATTGCTTT 60.179 50.000 0.00 0.00 39.07 3.51
4701 6745 0.704076 TAAGCCCACCCTGATTGCTT 59.296 50.000 0.00 0.00 43.97 3.91
4702 6746 0.034089 GTAAGCCCACCCTGATTGCT 60.034 55.000 0.00 0.00 0.00 3.91
4703 6747 1.037579 GGTAAGCCCACCCTGATTGC 61.038 60.000 0.00 0.00 31.91 3.56
4704 6748 0.625849 AGGTAAGCCCACCCTGATTG 59.374 55.000 0.74 0.00 39.62 2.67
4705 6749 3.120976 AGGTAAGCCCACCCTGATT 57.879 52.632 0.74 0.00 39.62 2.57
4706 6750 4.942900 AGGTAAGCCCACCCTGAT 57.057 55.556 0.74 0.00 39.62 2.90
4709 6753 2.907179 GCACAGGTAAGCCCACCCT 61.907 63.158 0.74 0.00 39.62 4.34
4710 6754 2.361230 GCACAGGTAAGCCCACCC 60.361 66.667 0.74 0.00 39.62 4.61
4711 6755 2.536997 ATCGCACAGGTAAGCCCACC 62.537 60.000 0.00 0.00 39.02 4.61
4712 6756 1.078426 ATCGCACAGGTAAGCCCAC 60.078 57.895 0.00 0.00 34.66 4.61
4713 6757 1.078497 CATCGCACAGGTAAGCCCA 60.078 57.895 0.00 0.00 34.66 5.36
4714 6758 2.472909 GCATCGCACAGGTAAGCCC 61.473 63.158 0.00 0.00 34.57 5.19
4715 6759 2.472909 GGCATCGCACAGGTAAGCC 61.473 63.158 0.00 0.00 0.00 4.35
4716 6760 1.745115 TGGCATCGCACAGGTAAGC 60.745 57.895 0.00 0.00 0.00 3.09
4717 6761 0.673333 TGTGGCATCGCACAGGTAAG 60.673 55.000 0.00 0.00 0.00 2.34
4718 6762 0.673333 CTGTGGCATCGCACAGGTAA 60.673 55.000 11.69 0.00 43.53 2.85
4719 6763 1.079197 CTGTGGCATCGCACAGGTA 60.079 57.895 11.69 0.00 43.53 3.08
4720 6764 2.359107 CTGTGGCATCGCACAGGT 60.359 61.111 11.69 0.00 43.53 4.00
4722 6766 2.046988 TCCTGTGGCATCGCACAG 60.047 61.111 12.37 12.37 45.97 3.66
4723 6767 2.046988 CTCCTGTGGCATCGCACA 60.047 61.111 0.00 0.00 0.00 4.57
4724 6768 3.503363 GCTCCTGTGGCATCGCAC 61.503 66.667 0.00 0.00 0.00 5.34
4725 6769 4.783621 GGCTCCTGTGGCATCGCA 62.784 66.667 0.00 0.00 0.00 5.10
4726 6770 4.783621 TGGCTCCTGTGGCATCGC 62.784 66.667 0.00 0.00 37.59 4.58
4730 6774 1.303561 GACAATGGCTCCTGTGGCA 60.304 57.895 0.00 0.00 46.31 4.92
4731 6775 1.303561 TGACAATGGCTCCTGTGGC 60.304 57.895 0.00 0.00 0.00 5.01
4732 6776 0.250858 TGTGACAATGGCTCCTGTGG 60.251 55.000 0.00 0.00 0.00 4.17
4733 6777 1.471287 CATGTGACAATGGCTCCTGTG 59.529 52.381 0.00 0.00 0.00 3.66
4734 6778 1.830279 CATGTGACAATGGCTCCTGT 58.170 50.000 0.00 0.00 0.00 4.00
4735 6779 0.454600 GCATGTGACAATGGCTCCTG 59.545 55.000 0.00 0.00 0.00 3.86
4736 6780 0.682209 GGCATGTGACAATGGCTCCT 60.682 55.000 12.00 0.00 46.63 3.69
4737 6781 1.811860 GGCATGTGACAATGGCTCC 59.188 57.895 12.00 0.00 46.63 4.70
4740 6784 2.202650 GCGGCATGTGACAATGGC 60.203 61.111 10.09 10.09 46.67 4.40
4741 6785 1.669049 ATGGCGGCATGTGACAATGG 61.669 55.000 25.20 0.00 0.00 3.16
4742 6786 0.173935 AATGGCGGCATGTGACAATG 59.826 50.000 26.50 0.00 0.00 2.82
4743 6787 0.896923 AAATGGCGGCATGTGACAAT 59.103 45.000 26.50 4.54 0.00 2.71
4744 6788 0.038435 CAAATGGCGGCATGTGACAA 60.038 50.000 32.67 0.00 0.00 3.18
4745 6789 0.892814 TCAAATGGCGGCATGTGACA 60.893 50.000 34.11 18.25 0.00 3.58
4746 6790 0.457035 ATCAAATGGCGGCATGTGAC 59.543 50.000 38.31 0.00 32.19 3.67
4747 6791 1.948834 CTATCAAATGGCGGCATGTGA 59.051 47.619 37.77 37.77 33.75 3.58
4748 6792 1.948834 TCTATCAAATGGCGGCATGTG 59.051 47.619 30.97 30.97 0.00 3.21
4749 6793 2.346766 TCTATCAAATGGCGGCATGT 57.653 45.000 26.50 18.28 0.00 3.21
4750 6794 2.094906 CCATCTATCAAATGGCGGCATG 60.095 50.000 26.50 15.91 37.46 4.06
4751 6795 2.165167 CCATCTATCAAATGGCGGCAT 58.835 47.619 20.18 20.18 37.46 4.40
4752 6796 1.608055 CCATCTATCAAATGGCGGCA 58.392 50.000 16.34 16.34 37.46 5.69
4753 6797 0.883833 CCCATCTATCAAATGGCGGC 59.116 55.000 0.00 0.00 42.03 6.53
4754 6798 1.073763 TCCCCATCTATCAAATGGCGG 59.926 52.381 0.00 1.04 42.03 6.13
4755 6799 2.038952 TCTCCCCATCTATCAAATGGCG 59.961 50.000 0.00 0.00 42.03 5.69
4756 6800 3.795688 TCTCCCCATCTATCAAATGGC 57.204 47.619 0.00 0.00 42.03 4.40
4757 6801 5.573380 TCTTCTCCCCATCTATCAAATGG 57.427 43.478 0.00 0.00 42.84 3.16
4758 6802 6.012683 AGGATCTTCTCCCCATCTATCAAATG 60.013 42.308 0.00 0.00 46.27 2.32
4759 6803 6.097062 AGGATCTTCTCCCCATCTATCAAAT 58.903 40.000 0.00 0.00 46.27 2.32
4760 6804 5.480710 AGGATCTTCTCCCCATCTATCAAA 58.519 41.667 0.00 0.00 46.27 2.69
4761 6805 5.090139 GAGGATCTTCTCCCCATCTATCAA 58.910 45.833 0.00 0.00 46.27 2.57
4762 6806 4.682563 GAGGATCTTCTCCCCATCTATCA 58.317 47.826 0.00 0.00 46.27 2.15
4763 6807 3.699038 CGAGGATCTTCTCCCCATCTATC 59.301 52.174 3.09 0.00 46.27 2.08
4764 6808 3.707316 CGAGGATCTTCTCCCCATCTAT 58.293 50.000 3.09 0.00 46.27 1.98
4765 6809 2.819726 GCGAGGATCTTCTCCCCATCTA 60.820 54.545 3.09 0.00 46.27 1.98
4766 6810 2.008242 CGAGGATCTTCTCCCCATCT 57.992 55.000 3.09 0.00 46.27 2.90
4767 6811 0.320050 GCGAGGATCTTCTCCCCATC 59.680 60.000 3.09 0.00 46.27 3.51
4768 6812 0.105246 AGCGAGGATCTTCTCCCCAT 60.105 55.000 3.09 0.00 46.27 4.00
4769 6813 1.045350 CAGCGAGGATCTTCTCCCCA 61.045 60.000 3.09 0.00 46.27 4.96
4770 6814 1.745264 CAGCGAGGATCTTCTCCCC 59.255 63.158 3.09 0.00 46.27 4.81
4771 6815 0.757188 TCCAGCGAGGATCTTCTCCC 60.757 60.000 3.09 0.00 46.27 4.30
4772 6816 2.814023 TCCAGCGAGGATCTTCTCC 58.186 57.895 3.09 0.00 43.07 3.71
4781 6825 1.134965 ACGATCTCTTTTCCAGCGAGG 60.135 52.381 0.00 0.00 39.47 4.63
4782 6826 2.285827 ACGATCTCTTTTCCAGCGAG 57.714 50.000 0.00 0.00 0.00 5.03
4783 6827 2.743636 AACGATCTCTTTTCCAGCGA 57.256 45.000 0.00 0.00 0.00 4.93
4784 6828 5.520632 TCTATAACGATCTCTTTTCCAGCG 58.479 41.667 0.00 0.00 0.00 5.18
4785 6829 7.115663 GTCATCTATAACGATCTCTTTTCCAGC 59.884 40.741 0.00 0.00 0.00 4.85
4786 6830 7.596995 GGTCATCTATAACGATCTCTTTTCCAG 59.403 40.741 0.00 0.00 0.00 3.86
4787 6831 7.434492 GGTCATCTATAACGATCTCTTTTCCA 58.566 38.462 0.00 0.00 0.00 3.53
4788 6832 6.583050 CGGTCATCTATAACGATCTCTTTTCC 59.417 42.308 0.00 0.00 0.00 3.13
4789 6833 7.113684 CACGGTCATCTATAACGATCTCTTTTC 59.886 40.741 0.00 0.00 0.00 2.29
4790 6834 6.918569 CACGGTCATCTATAACGATCTCTTTT 59.081 38.462 0.00 0.00 0.00 2.27
4791 6835 6.439599 CACGGTCATCTATAACGATCTCTTT 58.560 40.000 0.00 0.00 0.00 2.52
4792 6836 5.563085 GCACGGTCATCTATAACGATCTCTT 60.563 44.000 0.00 0.00 0.00 2.85
4793 6837 4.083217 GCACGGTCATCTATAACGATCTCT 60.083 45.833 0.00 0.00 0.00 3.10
4794 6838 4.083217 AGCACGGTCATCTATAACGATCTC 60.083 45.833 0.00 0.00 0.00 2.75
4795 6839 3.821600 AGCACGGTCATCTATAACGATCT 59.178 43.478 0.00 0.00 0.00 2.75
4796 6840 4.162096 AGCACGGTCATCTATAACGATC 57.838 45.455 0.00 0.00 0.00 3.69
4797 6841 5.648526 AGATAGCACGGTCATCTATAACGAT 59.351 40.000 0.00 0.00 0.00 3.73
4798 6842 5.001874 AGATAGCACGGTCATCTATAACGA 58.998 41.667 0.00 0.00 0.00 3.85
4799 6843 5.298197 AGATAGCACGGTCATCTATAACG 57.702 43.478 0.00 0.00 0.00 3.18
4800 6844 5.642686 GGAGATAGCACGGTCATCTATAAC 58.357 45.833 0.00 0.00 0.00 1.89
4801 6845 4.395231 CGGAGATAGCACGGTCATCTATAA 59.605 45.833 0.00 0.00 0.00 0.98
4802 6846 3.939592 CGGAGATAGCACGGTCATCTATA 59.060 47.826 0.00 0.00 0.00 1.31
4803 6847 2.750166 CGGAGATAGCACGGTCATCTAT 59.250 50.000 0.00 0.00 0.00 1.98
4804 6848 2.152016 CGGAGATAGCACGGTCATCTA 58.848 52.381 0.00 0.00 0.00 1.98
4805 6849 0.955178 CGGAGATAGCACGGTCATCT 59.045 55.000 0.00 0.00 0.00 2.90
4806 6850 0.669077 ACGGAGATAGCACGGTCATC 59.331 55.000 0.47 0.00 0.00 2.92
4807 6851 0.669077 GACGGAGATAGCACGGTCAT 59.331 55.000 10.40 0.00 35.85 3.06
4808 6852 1.712018 CGACGGAGATAGCACGGTCA 61.712 60.000 14.41 0.00 35.65 4.02
4809 6853 1.009900 CGACGGAGATAGCACGGTC 60.010 63.158 6.14 6.14 33.68 4.79
4810 6854 2.478890 CCGACGGAGATAGCACGGT 61.479 63.158 8.64 0.00 36.38 4.83
4811 6855 2.331805 CCGACGGAGATAGCACGG 59.668 66.667 8.64 0.00 34.77 4.94
4812 6856 2.331805 CCCGACGGAGATAGCACG 59.668 66.667 17.49 0.00 0.00 5.34
4813 6857 2.125961 ACCCCGACGGAGATAGCAC 61.126 63.158 17.49 0.00 34.64 4.40
4814 6858 2.277737 ACCCCGACGGAGATAGCA 59.722 61.111 17.49 0.00 34.64 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.