Multiple sequence alignment - TraesCS4A01G339300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G339300 chr4A 100.000 8063 0 0 1 8063 621118082 621126144 0.000000e+00 14890.0
1 TraesCS4A01G339300 chr4A 92.515 334 24 1 1853 2186 621119603 621119935 2.040000e-130 477.0
2 TraesCS4A01G339300 chr4A 92.515 334 24 1 1522 1854 621119934 621120267 2.040000e-130 477.0
3 TraesCS4A01G339300 chr4A 89.189 370 40 0 7690 8059 141912438 141912069 5.700000e-126 462.0
4 TraesCS4A01G339300 chr4A 89.032 155 17 0 397 551 621118101 621118255 8.260000e-45 193.0
5 TraesCS4A01G339300 chr4A 89.032 155 17 0 20 174 621118478 621118632 8.260000e-45 193.0
6 TraesCS4A01G339300 chr4A 95.082 61 2 1 1794 1854 64155923 64155982 2.400000e-15 95.3
7 TraesCS4A01G339300 chr4A 92.453 53 4 0 546 598 115549425 115549373 8.680000e-10 76.8
8 TraesCS4A01G339300 chr5B 95.255 3182 121 14 1853 5009 701150140 701153316 0.000000e+00 5012.0
9 TraesCS4A01G339300 chr5B 87.797 1180 87 22 6349 7492 701154826 701155984 0.000000e+00 1328.0
10 TraesCS4A01G339300 chr5B 95.969 769 27 4 5247 6015 701153831 701154595 0.000000e+00 1245.0
11 TraesCS4A01G339300 chr5B 86.351 1099 74 27 819 1854 701149403 701150488 0.000000e+00 1129.0
12 TraesCS4A01G339300 chr5B 90.885 373 34 0 7691 8063 69638051 69637679 1.210000e-137 501.0
13 TraesCS4A01G339300 chr5B 85.255 373 49 6 7690 8059 253156763 253156394 5.910000e-101 379.0
14 TraesCS4A01G339300 chr5B 92.140 229 12 4 920 1143 700336287 700336060 1.310000e-82 318.0
15 TraesCS4A01G339300 chr5B 86.207 232 6 3 6080 6310 701154621 701154827 2.260000e-55 228.0
16 TraesCS4A01G339300 chr5B 90.598 117 6 3 2907 3018 153175389 153175505 5.040000e-32 150.0
17 TraesCS4A01G339300 chr5B 82.394 142 17 7 1157 1295 700336088 700335952 5.110000e-22 117.0
18 TraesCS4A01G339300 chr5B 88.679 53 3 3 18 68 216580922 216580871 2.430000e-05 62.1
19 TraesCS4A01G339300 chr5D 93.445 3173 137 26 1853 5009 549574250 549577367 0.000000e+00 4641.0
20 TraesCS4A01G339300 chr5D 91.792 1194 67 15 6059 7233 549578463 549579644 0.000000e+00 1633.0
21 TraesCS4A01G339300 chr5D 96.071 789 18 6 5247 6024 549577690 549578476 0.000000e+00 1273.0
22 TraesCS4A01G339300 chr5D 91.579 760 57 7 1099 1854 549573826 549574582 0.000000e+00 1042.0
23 TraesCS4A01G339300 chr5D 86.963 652 53 12 1220 1855 371032207 371031572 0.000000e+00 704.0
24 TraesCS4A01G339300 chr5D 86.963 652 53 12 1220 1855 479384685 479385320 0.000000e+00 704.0
25 TraesCS4A01G339300 chr5D 88.927 578 42 10 1859 2419 371031911 371031339 0.000000e+00 693.0
26 TraesCS4A01G339300 chr5D 87.838 592 46 14 1841 2413 479384963 479385547 0.000000e+00 671.0
27 TraesCS4A01G339300 chr5D 89.600 375 38 1 7689 8063 21451095 21450722 7.320000e-130 475.0
28 TraesCS4A01G339300 chr5D 87.601 371 42 2 7689 8059 31125672 31126038 2.080000e-115 427.0
29 TraesCS4A01G339300 chr5D 83.756 394 29 24 915 1289 522009609 522009986 2.790000e-89 340.0
30 TraesCS4A01G339300 chr5D 91.244 217 5 7 920 1131 549573612 549573819 4.760000e-72 283.0
31 TraesCS4A01G339300 chr5D 93.258 178 11 1 617 794 220494651 220494475 2.230000e-65 261.0
32 TraesCS4A01G339300 chr5D 83.556 225 23 11 1077 1289 522032195 522032417 1.770000e-46 198.0
33 TraesCS4A01G339300 chr5D 90.400 125 6 1 5130 5248 549577363 549577487 8.380000e-35 159.0
34 TraesCS4A01G339300 chr5D 82.609 138 4 11 915 1045 522031740 522031864 3.980000e-18 104.0
35 TraesCS4A01G339300 chr1D 86.810 652 54 12 1220 1855 469880666 469880031 0.000000e+00 699.0
36 TraesCS4A01G339300 chr1D 88.581 578 44 10 1859 2419 469880370 469879798 0.000000e+00 682.0
37 TraesCS4A01G339300 chr1D 93.855 179 8 3 617 794 191235468 191235292 4.800000e-67 267.0
38 TraesCS4A01G339300 chr1D 92.135 178 12 2 617 794 69911707 69911532 4.830000e-62 250.0
39 TraesCS4A01G339300 chr1D 92.135 178 13 1 617 794 329834120 329833944 4.830000e-62 250.0
40 TraesCS4A01G339300 chr1D 95.745 47 1 1 6012 6058 179905057 179905012 3.120000e-09 75.0
41 TraesCS4A01G339300 chr1D 94.000 50 2 1 6009 6058 222694567 222694615 3.120000e-09 75.0
42 TraesCS4A01G339300 chr1D 92.308 52 3 1 18 68 39639183 39639132 1.120000e-08 73.1
43 TraesCS4A01G339300 chr1D 100.000 39 0 0 6020 6058 160130425 160130387 1.120000e-08 73.1
44 TraesCS4A01G339300 chr1A 97.600 375 9 0 7689 8063 519843001 519843375 1.900000e-180 643.0
45 TraesCS4A01G339300 chr1A 96.800 375 12 0 7689 8063 101087361 101086987 1.910000e-175 627.0
46 TraesCS4A01G339300 chr1A 94.615 130 5 2 5006 5134 485564157 485564029 4.930000e-47 200.0
47 TraesCS4A01G339300 chr1A 78.723 329 40 20 2587 2907 253306878 253307184 8.260000e-45 193.0
48 TraesCS4A01G339300 chr1A 87.742 155 15 4 1160 1313 547729129 547728978 2.310000e-40 178.0
49 TraesCS4A01G339300 chr1A 93.805 113 4 1 7579 7688 519842859 519842971 5.010000e-37 167.0
50 TraesCS4A01G339300 chr1A 95.946 74 0 1 7617 7687 101087465 101087392 5.110000e-22 117.0
51 TraesCS4A01G339300 chr6B 91.727 411 32 2 185 594 374974887 374974478 3.270000e-158 569.0
52 TraesCS4A01G339300 chr6B 78.662 314 37 17 2569 2875 28012953 28012663 1.790000e-41 182.0
53 TraesCS4A01G339300 chr6B 86.335 161 20 2 15 174 374974680 374974521 2.990000e-39 174.0
54 TraesCS4A01G339300 chr2D 90.418 407 38 1 188 594 10052074 10052479 1.190000e-147 534.0
55 TraesCS4A01G339300 chr2D 94.030 134 8 0 5001 5134 536091159 536091026 3.810000e-48 204.0
56 TraesCS4A01G339300 chr2D 89.855 69 7 0 526 594 245277116 245277048 1.110000e-13 89.8
57 TraesCS4A01G339300 chr7D 91.644 371 31 0 7689 8059 37949562 37949932 1.550000e-141 514.0
58 TraesCS4A01G339300 chr7D 93.785 177 10 1 618 794 548196942 548197117 1.730000e-66 265.0
59 TraesCS4A01G339300 chr7D 94.737 38 2 0 4256 4293 36217073 36217110 8.740000e-05 60.2
60 TraesCS4A01G339300 chr1B 90.541 370 34 1 7690 8059 499552956 499552588 9.400000e-134 488.0
61 TraesCS4A01G339300 chr1B 92.715 151 7 3 4985 5133 270318585 270318437 1.760000e-51 215.0
62 TraesCS4A01G339300 chr1B 94.203 138 8 0 4999 5136 623731977 623732114 2.280000e-50 211.0
63 TraesCS4A01G339300 chr1B 93.443 61 3 1 1794 1854 253068573 253068514 1.110000e-13 89.8
64 TraesCS4A01G339300 chr1B 97.297 37 0 1 4264 4300 188263472 188263437 2.430000e-05 62.1
65 TraesCS4A01G339300 chr1B 92.857 42 3 0 4251 4292 583952480 583952439 2.430000e-05 62.1
66 TraesCS4A01G339300 chr7B 84.677 372 55 2 7689 8059 679749621 679749251 3.550000e-98 370.0
67 TraesCS4A01G339300 chr7B 94.737 133 7 0 5002 5134 720066993 720066861 2.950000e-49 207.0
68 TraesCS4A01G339300 chr7B 90.196 51 4 1 19 68 134092500 134092550 1.880000e-06 65.8
69 TraesCS4A01G339300 chr7B 83.333 78 3 4 4225 4292 372831452 372831529 6.760000e-06 63.9
70 TraesCS4A01G339300 chr7B 88.235 51 5 1 19 68 345190208 345190258 8.740000e-05 60.2
71 TraesCS4A01G339300 chr7B 94.737 38 1 1 31 68 246344119 246344155 3.140000e-04 58.4
72 TraesCS4A01G339300 chr3D 92.935 184 11 2 612 794 581727570 581727388 4.800000e-67 267.0
73 TraesCS4A01G339300 chr3D 91.053 190 14 3 606 794 9631604 9631791 3.730000e-63 254.0
74 TraesCS4A01G339300 chr3D 95.455 132 6 0 5002 5133 614251087 614251218 2.280000e-50 211.0
75 TraesCS4A01G339300 chr3D 100.000 39 0 0 6020 6058 193721042 193721080 1.120000e-08 73.1
76 TraesCS4A01G339300 chr3D 100.000 39 0 0 6020 6058 337541848 337541886 1.120000e-08 73.1
77 TraesCS4A01G339300 chr3D 97.561 41 1 0 6018 6058 19827489 19827529 4.040000e-08 71.3
78 TraesCS4A01G339300 chr4D 92.655 177 12 1 618 794 4359394 4359569 3.730000e-63 254.0
79 TraesCS4A01G339300 chr4D 91.803 183 12 3 612 794 178988072 178987893 1.340000e-62 252.0
80 TraesCS4A01G339300 chr4D 90.385 52 5 0 6010 6061 198305470 198305419 1.450000e-07 69.4
81 TraesCS4A01G339300 chr4B 87.156 218 28 0 7842 8059 509015936 509016153 1.740000e-61 248.0
82 TraesCS4A01G339300 chr4B 91.304 46 3 1 4248 4292 666666960 666667005 2.430000e-05 62.1
83 TraesCS4A01G339300 chr4B 91.304 46 3 1 4248 4292 666703575 666703620 2.430000e-05 62.1
84 TraesCS4A01G339300 chr5A 92.398 171 12 1 7689 7859 332747921 332748090 8.080000e-60 243.0
85 TraesCS4A01G339300 chr5A 95.327 107 3 2 2914 3018 210486205 210486099 1.390000e-37 169.0
86 TraesCS4A01G339300 chr5A 100.000 40 0 0 6019 6058 49539076 49539115 3.120000e-09 75.0
87 TraesCS4A01G339300 chr6A 96.154 130 5 0 5005 5134 28664741 28664612 6.340000e-51 213.0
88 TraesCS4A01G339300 chr6A 92.857 42 3 0 556 597 389456793 389456752 2.430000e-05 62.1
89 TraesCS4A01G339300 chr3A 94.697 132 7 0 5002 5133 348834441 348834572 1.060000e-48 206.0
90 TraesCS4A01G339300 chr3B 94.074 135 7 1 5000 5134 22647469 22647336 3.810000e-48 204.0
91 TraesCS4A01G339300 chr3B 87.500 160 20 0 15 174 794667855 794668014 1.380000e-42 185.0
92 TraesCS4A01G339300 chr3B 100.000 39 0 0 6020 6058 154478514 154478552 1.120000e-08 73.1
93 TraesCS4A01G339300 chr2A 84.821 112 15 2 484 594 255912303 255912413 2.380000e-20 111.0
94 TraesCS4A01G339300 chrUn 84.314 102 2 9 922 1021 323093700 323093611 4.010000e-13 87.9
95 TraesCS4A01G339300 chr7A 97.561 41 1 0 4252 4292 116122555 116122595 4.040000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G339300 chr4A 621118082 621126144 8062 False 14890.000000 14890 100.000000 1 8063 1 chr4A.!!$F2 8062
1 TraesCS4A01G339300 chr4A 621118101 621120267 2166 False 335.000000 477 90.773500 20 2186 4 chr4A.!!$F3 2166
2 TraesCS4A01G339300 chr5B 701149403 701155984 6581 False 1788.400000 5012 90.315800 819 7492 5 chr5B.!!$F2 6673
3 TraesCS4A01G339300 chr5D 549573612 549579644 6032 False 1505.166667 4641 92.421833 920 7233 6 chr5D.!!$F5 6313
4 TraesCS4A01G339300 chr5D 371031339 371032207 868 True 698.500000 704 87.945000 1220 2419 2 chr5D.!!$R3 1199
5 TraesCS4A01G339300 chr5D 479384685 479385547 862 False 687.500000 704 87.400500 1220 2413 2 chr5D.!!$F3 1193
6 TraesCS4A01G339300 chr1D 469879798 469880666 868 True 690.500000 699 87.695500 1220 2419 2 chr1D.!!$R7 1199
7 TraesCS4A01G339300 chr1A 519842859 519843375 516 False 405.000000 643 95.702500 7579 8063 2 chr1A.!!$F2 484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 2327 3.949754 CACCCTCATTGCTGTCATGTTAT 59.050 43.478 0.00 0.0 0.00 1.89 F
2448 2540 1.429930 TACCCTGAACAGACTTGGCA 58.570 50.000 3.19 0.0 0.00 4.92 F
2699 2791 1.860906 TGGTAAAGTTCCCCCACCTTT 59.139 47.619 0.00 0.0 33.32 3.11 F
4236 4341 1.134560 GTACGCCCTCCGATCCATATC 59.865 57.143 0.00 0.0 41.02 1.63 F
5023 5130 0.252103 AGTACTCCCTCCGCCTCAAA 60.252 55.000 0.00 0.0 0.00 2.69 F
6765 7293 0.306533 GCGCTCCGACAGAAAACAAA 59.693 50.000 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3349 3446 1.795162 GCACTGCATGATAACAACGGC 60.795 52.381 0.00 0.0 0.00 5.68 R
3752 3851 3.007506 TCAAACAGCATCGTTTAGAGGGA 59.992 43.478 0.00 0.0 36.98 4.20 R
4639 4746 2.694109 CTCAGTCTCATCAGGATCAGCA 59.306 50.000 0.00 0.0 0.00 4.41 R
6046 6565 0.036875 GAGCTGTAGCAGTGGGGTTT 59.963 55.000 6.65 0.0 45.16 3.27 R
6767 7295 0.250467 ACGAGCACTTGATTGCCTGT 60.250 50.000 0.00 0.0 44.14 4.00 R
7731 8337 1.131638 GTGGATCCACTAGGCCATCA 58.868 55.000 33.47 0.0 43.12 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2238 2327 3.949754 CACCCTCATTGCTGTCATGTTAT 59.050 43.478 0.00 0.00 0.00 1.89
2240 2329 3.567164 CCCTCATTGCTGTCATGTTATCC 59.433 47.826 0.00 0.00 0.00 2.59
2255 2344 3.190874 GTTATCCTGCAAAGTCCTCTCG 58.809 50.000 0.00 0.00 0.00 4.04
2291 2380 5.186021 ACGTCTCTTCATAGTGATTTGACCT 59.814 40.000 0.00 0.00 0.00 3.85
2314 2405 3.009473 ACAGAGATTTGAGCTGGGCTTTA 59.991 43.478 0.00 0.00 39.88 1.85
2315 2406 3.376546 CAGAGATTTGAGCTGGGCTTTAC 59.623 47.826 0.00 0.00 39.88 2.01
2316 2407 3.265479 AGAGATTTGAGCTGGGCTTTACT 59.735 43.478 0.00 0.00 39.88 2.24
2317 2408 4.471386 AGAGATTTGAGCTGGGCTTTACTA 59.529 41.667 0.00 0.00 39.88 1.82
2320 2411 6.292150 AGATTTGAGCTGGGCTTTACTATAC 58.708 40.000 0.00 0.00 39.88 1.47
2372 2464 4.576330 TCATCAGGTCTGTACTCTGAGA 57.424 45.455 12.44 0.00 36.78 3.27
2439 2531 3.068873 GGTTTGTGCAATTACCCTGAACA 59.931 43.478 0.00 0.00 30.06 3.18
2448 2540 1.429930 TACCCTGAACAGACTTGGCA 58.570 50.000 3.19 0.00 0.00 4.92
2478 2570 3.002759 GCTTGTGAGGTCTTGTGTTTCTC 59.997 47.826 0.00 0.00 0.00 2.87
2699 2791 1.860906 TGGTAAAGTTCCCCCACCTTT 59.139 47.619 0.00 0.00 33.32 3.11
2757 2849 7.653647 CAACTTCATCTCTAGTACAGTATCCC 58.346 42.308 0.00 0.00 0.00 3.85
2873 2966 7.556275 TCAGTTCTCTTGTTGTCCAAACTATTT 59.444 33.333 0.00 0.00 31.20 1.40
2965 3062 4.763793 TCTCCTTTCTTGAGCATGAAAAGG 59.236 41.667 0.00 5.95 0.00 3.11
2987 3084 5.877491 GGTAATATACCCCTTAGCAAGCTT 58.123 41.667 0.00 0.00 43.18 3.74
3018 3115 4.816385 TGTTGAACCTGATGACTTCACTTC 59.184 41.667 0.00 0.00 0.00 3.01
3035 3132 5.108517 TCACTTCACTTTTGGCAAATGTTC 58.891 37.500 23.95 0.00 0.00 3.18
3039 3136 6.092533 ACTTCACTTTTGGCAAATGTTCTTTG 59.907 34.615 23.95 14.87 0.00 2.77
3042 3139 5.122082 CACTTTTGGCAAATGTTCTTTGTGT 59.878 36.000 23.95 2.27 0.00 3.72
3126 3223 3.069729 GGTTGGCTACCTGGTATCTACTG 59.930 52.174 11.03 0.00 44.10 2.74
3130 3227 3.158676 GCTACCTGGTATCTACTGGAGG 58.841 54.545 7.07 0.00 0.00 4.30
3143 3240 8.964772 GTATCTACTGGAGGTGTCTTAGTTTTA 58.035 37.037 0.00 0.00 0.00 1.52
3144 3241 7.224522 TCTACTGGAGGTGTCTTAGTTTTAC 57.775 40.000 0.00 0.00 0.00 2.01
3145 3242 4.879598 ACTGGAGGTGTCTTAGTTTTACG 58.120 43.478 0.00 0.00 0.00 3.18
3349 3446 9.077674 GTTATATATACGATCTGGCTTTGTCTG 57.922 37.037 0.00 0.00 0.00 3.51
3387 3484 3.632643 TGCAGTCCAGCAAAGATGATA 57.367 42.857 0.00 0.00 42.46 2.15
3388 3485 3.954200 TGCAGTCCAGCAAAGATGATAA 58.046 40.909 0.00 0.00 42.46 1.75
3531 3629 7.268586 TGCTGTAGGTCTATTTTTCTCATCTC 58.731 38.462 0.00 0.00 0.00 2.75
3653 3752 3.118482 AGCTGTCTCACGGAAATGATGAT 60.118 43.478 0.00 0.00 0.00 2.45
3752 3851 8.730680 GGTACACACAATTAGAACATTGAGATT 58.269 33.333 0.00 0.00 37.55 2.40
3818 3919 4.801147 ATCAGTGTGCTACATTAATGCG 57.199 40.909 15.48 8.03 0.00 4.73
4043 4144 9.049523 CAAGCTCTTTTATGAAGCAGATATGTA 57.950 33.333 0.00 0.00 0.00 2.29
4088 4189 8.719648 TGAGTCGTAACAAGTAAAAGTTTCAAA 58.280 29.630 0.00 0.00 0.00 2.69
4152 4253 5.946298 TCTAGACTGCATGCAATTTTTCTG 58.054 37.500 22.88 9.78 0.00 3.02
4236 4341 1.134560 GTACGCCCTCCGATCCATATC 59.865 57.143 0.00 0.00 41.02 1.63
4272 4377 6.907212 GGATTGTACTAAATCTGCGACAATTG 59.093 38.462 3.24 3.24 37.57 2.32
4337 4443 4.826733 TGCATCCTGTACTGTGAAAAATGT 59.173 37.500 0.00 0.00 0.00 2.71
4395 4501 8.623903 TCATGTACATTAGCAATTTTCAGATCC 58.376 33.333 5.37 0.00 0.00 3.36
4396 4502 7.936496 TGTACATTAGCAATTTTCAGATCCA 57.064 32.000 0.00 0.00 0.00 3.41
4398 4504 9.625747 TGTACATTAGCAATTTTCAGATCCATA 57.374 29.630 0.00 0.00 0.00 2.74
4549 4656 1.848652 TGGGTAGTCTTTCTCCCGAG 58.151 55.000 0.00 0.00 42.54 4.63
4639 4746 1.003355 CTCAACAGATGGCGGGTGT 60.003 57.895 0.00 0.00 0.00 4.16
4772 4879 1.743252 CAAACTCGGAGCTGCCCTC 60.743 63.158 4.58 0.00 39.98 4.30
4856 4963 9.525826 TCTCTGATATATGCTCTTGAGTATTGA 57.474 33.333 6.54 0.00 0.00 2.57
5015 5122 8.423906 TGATCAATATCTTTAGTACTCCCTCC 57.576 38.462 0.00 0.00 32.93 4.30
5016 5123 6.896021 TCAATATCTTTAGTACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
5017 5124 5.243283 TCAATATCTTTAGTACTCCCTCCGC 59.757 44.000 0.00 0.00 0.00 5.54
5018 5125 1.772836 TCTTTAGTACTCCCTCCGCC 58.227 55.000 0.00 0.00 0.00 6.13
5019 5126 1.287146 TCTTTAGTACTCCCTCCGCCT 59.713 52.381 0.00 0.00 0.00 5.52
5020 5127 1.682323 CTTTAGTACTCCCTCCGCCTC 59.318 57.143 0.00 0.00 0.00 4.70
5021 5128 0.627451 TTAGTACTCCCTCCGCCTCA 59.373 55.000 0.00 0.00 0.00 3.86
5022 5129 0.627451 TAGTACTCCCTCCGCCTCAA 59.373 55.000 0.00 0.00 0.00 3.02
5023 5130 0.252103 AGTACTCCCTCCGCCTCAAA 60.252 55.000 0.00 0.00 0.00 2.69
5024 5131 0.611714 GTACTCCCTCCGCCTCAAAA 59.388 55.000 0.00 0.00 0.00 2.44
5025 5132 1.209747 GTACTCCCTCCGCCTCAAAAT 59.790 52.381 0.00 0.00 0.00 1.82
5026 5133 0.698818 ACTCCCTCCGCCTCAAAATT 59.301 50.000 0.00 0.00 0.00 1.82
5027 5134 1.340114 ACTCCCTCCGCCTCAAAATTC 60.340 52.381 0.00 0.00 0.00 2.17
5028 5135 0.991920 TCCCTCCGCCTCAAAATTCT 59.008 50.000 0.00 0.00 0.00 2.40
5029 5136 1.354368 TCCCTCCGCCTCAAAATTCTT 59.646 47.619 0.00 0.00 0.00 2.52
5030 5137 1.474077 CCCTCCGCCTCAAAATTCTTG 59.526 52.381 0.00 0.00 0.00 3.02
5031 5138 2.162681 CCTCCGCCTCAAAATTCTTGT 58.837 47.619 0.00 0.00 0.00 3.16
5032 5139 2.162408 CCTCCGCCTCAAAATTCTTGTC 59.838 50.000 0.00 0.00 0.00 3.18
5033 5140 3.077359 CTCCGCCTCAAAATTCTTGTCT 58.923 45.455 0.00 0.00 0.00 3.41
5034 5141 3.486383 TCCGCCTCAAAATTCTTGTCTT 58.514 40.909 0.00 0.00 0.00 3.01
5035 5142 4.647611 TCCGCCTCAAAATTCTTGTCTTA 58.352 39.130 0.00 0.00 0.00 2.10
5036 5143 4.695455 TCCGCCTCAAAATTCTTGTCTTAG 59.305 41.667 0.00 0.00 0.00 2.18
5037 5144 4.695455 CCGCCTCAAAATTCTTGTCTTAGA 59.305 41.667 0.00 0.00 0.00 2.10
5038 5145 5.163814 CCGCCTCAAAATTCTTGTCTTAGAG 60.164 44.000 0.00 0.00 0.00 2.43
5039 5146 5.409826 CGCCTCAAAATTCTTGTCTTAGAGT 59.590 40.000 0.00 0.00 0.00 3.24
5040 5147 6.401581 CGCCTCAAAATTCTTGTCTTAGAGTC 60.402 42.308 0.00 0.00 0.00 3.36
5041 5148 6.401581 GCCTCAAAATTCTTGTCTTAGAGTCG 60.402 42.308 0.00 0.00 0.00 4.18
5042 5149 6.647067 CCTCAAAATTCTTGTCTTAGAGTCGT 59.353 38.462 0.00 0.00 0.00 4.34
5043 5150 7.148722 CCTCAAAATTCTTGTCTTAGAGTCGTC 60.149 40.741 0.00 0.00 0.00 4.20
5044 5151 7.434492 TCAAAATTCTTGTCTTAGAGTCGTCT 58.566 34.615 0.00 0.00 36.75 4.18
5045 5152 8.573885 TCAAAATTCTTGTCTTAGAGTCGTCTA 58.426 33.333 0.00 0.00 33.84 2.59
5046 5153 8.855279 CAAAATTCTTGTCTTAGAGTCGTCTAG 58.145 37.037 0.00 0.00 36.61 2.43
5047 5154 7.925043 AATTCTTGTCTTAGAGTCGTCTAGA 57.075 36.000 0.00 0.00 36.61 2.43
5048 5155 8.514330 AATTCTTGTCTTAGAGTCGTCTAGAT 57.486 34.615 0.00 0.00 36.61 1.98
5049 5156 9.616156 AATTCTTGTCTTAGAGTCGTCTAGATA 57.384 33.333 0.00 0.00 36.61 1.98
5050 5157 8.422973 TTCTTGTCTTAGAGTCGTCTAGATAC 57.577 38.462 0.00 0.00 36.61 2.24
5051 5158 6.696583 TCTTGTCTTAGAGTCGTCTAGATACG 59.303 42.308 0.00 0.00 44.19 3.06
5052 5159 5.288015 TGTCTTAGAGTCGTCTAGATACGG 58.712 45.833 0.00 0.00 43.05 4.02
5053 5160 5.068329 TGTCTTAGAGTCGTCTAGATACGGA 59.932 44.000 0.00 0.00 43.05 4.69
5054 5161 6.158598 GTCTTAGAGTCGTCTAGATACGGAT 58.841 44.000 0.00 0.00 43.05 4.18
5055 5162 6.089820 GTCTTAGAGTCGTCTAGATACGGATG 59.910 46.154 0.00 0.00 43.05 3.51
5056 5163 4.339872 AGAGTCGTCTAGATACGGATGT 57.660 45.455 0.00 0.00 43.05 3.06
5057 5164 5.465532 AGAGTCGTCTAGATACGGATGTA 57.534 43.478 0.00 0.00 43.05 2.29
5058 5165 6.040209 AGAGTCGTCTAGATACGGATGTAT 57.960 41.667 0.00 0.00 43.97 2.29
5059 5166 7.257003 TAGAGTCGTCTAGATACGGATGTATC 58.743 42.308 7.22 7.22 43.79 2.24
5088 5195 7.515957 ACTAAAACGTTACTTGATACATCCG 57.484 36.000 0.00 0.00 0.00 4.18
5089 5196 7.092716 ACTAAAACGTTACTTGATACATCCGT 58.907 34.615 0.00 0.00 0.00 4.69
5090 5197 8.243426 ACTAAAACGTTACTTGATACATCCGTA 58.757 33.333 0.00 0.00 0.00 4.02
5091 5198 9.241317 CTAAAACGTTACTTGATACATCCGTAT 57.759 33.333 0.00 0.00 41.16 3.06
5092 5199 8.483307 AAAACGTTACTTGATACATCCGTATT 57.517 30.769 0.00 0.00 38.48 1.89
5093 5200 8.483307 AAACGTTACTTGATACATCCGTATTT 57.517 30.769 0.00 0.00 38.48 1.40
5094 5201 9.585099 AAACGTTACTTGATACATCCGTATTTA 57.415 29.630 0.00 0.00 38.48 1.40
5095 5202 8.792831 ACGTTACTTGATACATCCGTATTTAG 57.207 34.615 0.00 0.00 38.48 1.85
5096 5203 8.623903 ACGTTACTTGATACATCCGTATTTAGA 58.376 33.333 0.00 0.00 38.48 2.10
5097 5204 8.899776 CGTTACTTGATACATCCGTATTTAGAC 58.100 37.037 0.00 0.00 38.48 2.59
5098 5205 9.740239 GTTACTTGATACATCCGTATTTAGACA 57.260 33.333 0.00 0.00 38.48 3.41
5101 5208 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
5124 5231 9.463443 AAATTTAAGACAAGAATTTTGAGACGG 57.537 29.630 0.00 0.00 31.00 4.79
5125 5232 7.795482 TTTAAGACAAGAATTTTGAGACGGA 57.205 32.000 7.18 0.00 0.00 4.69
5126 5233 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
5127 5234 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
5128 5235 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
5141 5248 1.634459 ACGGAGGGAGTACAAGAGAGA 59.366 52.381 0.00 0.00 0.00 3.10
5158 5265 7.338703 ACAAGAGAGAACATCAATTACATGCAT 59.661 33.333 0.00 0.00 0.00 3.96
5159 5266 7.493743 AGAGAGAACATCAATTACATGCATC 57.506 36.000 0.00 0.00 0.00 3.91
5160 5267 6.485984 AGAGAGAACATCAATTACATGCATCC 59.514 38.462 0.00 0.00 0.00 3.51
5161 5268 6.124340 AGAGAACATCAATTACATGCATCCA 58.876 36.000 0.00 0.00 0.00 3.41
5162 5269 6.262496 AGAGAACATCAATTACATGCATCCAG 59.738 38.462 0.00 0.00 0.00 3.86
5216 5329 7.737869 TGTGGTAAATTTGTCAGAGGTAGTAA 58.262 34.615 0.00 0.00 0.00 2.24
5279 5788 9.559958 GATTTCACATGTTTGTTAGTCTTATGG 57.440 33.333 0.00 0.00 32.34 2.74
5384 5902 5.708230 TGTTACTTAATGTTAGCCAAGTGGG 59.292 40.000 0.00 0.00 40.85 4.61
5441 5959 6.152932 TGGTTACGTCTTTCTACTTGTTCT 57.847 37.500 0.00 0.00 0.00 3.01
5506 6024 6.207810 ACCATGGTGTTTTACGTTCATTATGT 59.792 34.615 18.99 0.00 0.00 2.29
5713 6231 7.555195 AGCATGTTTGAGATAATCATCTTCACA 59.445 33.333 0.00 0.00 41.78 3.58
5824 6342 3.134804 GTGTCTATGTGGAGGGCAACTAT 59.865 47.826 0.00 0.00 0.00 2.12
5926 6445 6.880484 ACCATACACGTTAGTTATTCATGGA 58.120 36.000 10.24 0.00 0.00 3.41
5933 6452 9.095065 ACACGTTAGTTATTCATGGATTAGTTC 57.905 33.333 0.00 0.00 0.00 3.01
5949 6468 6.819146 GGATTAGTTCTTTCTCCTGTTCGAAT 59.181 38.462 0.00 0.00 0.00 3.34
6015 6534 8.492673 TTTATTAGCACTGGTCTTCATTACAG 57.507 34.615 0.00 0.00 37.01 2.74
6016 6535 2.704572 AGCACTGGTCTTCATTACAGC 58.295 47.619 0.00 0.00 34.40 4.40
6017 6536 2.304180 AGCACTGGTCTTCATTACAGCT 59.696 45.455 0.00 0.00 34.40 4.24
6018 6537 3.515502 AGCACTGGTCTTCATTACAGCTA 59.484 43.478 0.00 0.00 34.40 3.32
6019 6538 4.163078 AGCACTGGTCTTCATTACAGCTAT 59.837 41.667 0.00 0.00 34.40 2.97
6020 6539 4.878397 GCACTGGTCTTCATTACAGCTATT 59.122 41.667 0.00 0.00 34.40 1.73
6021 6540 5.355350 GCACTGGTCTTCATTACAGCTATTT 59.645 40.000 0.00 0.00 34.40 1.40
6022 6541 6.127897 GCACTGGTCTTCATTACAGCTATTTT 60.128 38.462 0.00 0.00 34.40 1.82
6023 6542 7.575720 GCACTGGTCTTCATTACAGCTATTTTT 60.576 37.037 0.00 0.00 34.40 1.94
6058 6577 3.450282 GGGTAAAAACCCCACTGCT 57.550 52.632 1.88 0.00 44.18 4.24
6059 6578 2.590282 GGGTAAAAACCCCACTGCTA 57.410 50.000 1.88 0.00 44.18 3.49
6060 6579 2.165167 GGGTAAAAACCCCACTGCTAC 58.835 52.381 1.88 0.00 44.18 3.58
6061 6580 2.489437 GGGTAAAAACCCCACTGCTACA 60.489 50.000 1.88 0.00 44.18 2.74
6062 6581 2.817844 GGTAAAAACCCCACTGCTACAG 59.182 50.000 0.00 0.00 37.52 2.74
6121 6648 3.810386 GTCTGACTCTTCTTGGTTGTTCC 59.190 47.826 0.00 0.00 0.00 3.62
6141 6668 6.095300 TGTTCCGAAATAGCAACATGAATGAT 59.905 34.615 0.00 0.00 0.00 2.45
6168 6695 4.713321 TCCGTAAAACCTATCTTACTGGCT 59.287 41.667 0.00 0.00 0.00 4.75
6375 6903 7.657761 CAGTATCATGGGTGTAGTTAATTCCTC 59.342 40.741 0.00 0.00 0.00 3.71
6377 6905 5.036916 TCATGGGTGTAGTTAATTCCTCCT 58.963 41.667 0.00 0.00 0.00 3.69
6436 6964 6.972328 TCTTCATTCTGTTTTTGTGTAGCAAC 59.028 34.615 0.00 0.00 36.72 4.17
6459 6987 4.624125 CGAGTTTCCCCTTTATTCTCTGCT 60.624 45.833 0.00 0.00 0.00 4.24
6597 7125 0.535102 ACCCAAACGACAAGGAGCTG 60.535 55.000 0.00 0.00 0.00 4.24
6753 7281 3.793144 GCCAACTGAAGCGCTCCG 61.793 66.667 12.06 4.48 0.00 4.63
6764 7292 0.531974 AGCGCTCCGACAGAAAACAA 60.532 50.000 2.64 0.00 0.00 2.83
6765 7293 0.306533 GCGCTCCGACAGAAAACAAA 59.693 50.000 0.00 0.00 0.00 2.83
6766 7294 1.268335 GCGCTCCGACAGAAAACAAAA 60.268 47.619 0.00 0.00 0.00 2.44
6767 7295 2.793237 GCGCTCCGACAGAAAACAAAAA 60.793 45.455 0.00 0.00 0.00 1.94
6768 7296 2.781646 CGCTCCGACAGAAAACAAAAAC 59.218 45.455 0.00 0.00 0.00 2.43
6769 7297 3.729462 CGCTCCGACAGAAAACAAAAACA 60.729 43.478 0.00 0.00 0.00 2.83
6786 7314 0.250467 ACAGGCAATCAAGTGCTCGT 60.250 50.000 2.23 0.00 44.31 4.18
6898 7430 5.699097 TGGGCTGTTGTATGTTTCTAAAC 57.301 39.130 0.00 0.00 39.33 2.01
6939 7471 2.350522 CTTGTACAAGCAGTAGCCAGG 58.649 52.381 22.03 0.00 43.56 4.45
7019 7556 4.272018 CAGCATTGTAATAGGTCAGCAGAC 59.728 45.833 0.00 0.00 44.21 3.51
7043 7580 1.262950 TGTCGGAATTTGTTGTGCTCG 59.737 47.619 0.00 0.00 0.00 5.03
7084 7622 5.515626 GCATGTAGTTTCCAAGTAGAGTACG 59.484 44.000 0.00 0.00 0.00 3.67
7122 7664 4.540359 TTAGCTGCCAATTGAGCATTTT 57.460 36.364 18.33 11.20 40.04 1.82
7137 7680 7.202016 TGAGCATTTTAGCTTTTATATCCCG 57.798 36.000 0.00 0.00 46.75 5.14
7143 7686 6.497624 TTTAGCTTTTATATCCCGGTGGTA 57.502 37.500 0.00 0.00 0.00 3.25
7222 7778 3.205338 ACATGCCAAGAAAAACCAAAGC 58.795 40.909 0.00 0.00 0.00 3.51
7223 7779 3.118298 ACATGCCAAGAAAAACCAAAGCT 60.118 39.130 0.00 0.00 0.00 3.74
7229 7785 6.093404 GCCAAGAAAAACCAAAGCTAGTATC 58.907 40.000 0.00 0.00 0.00 2.24
7257 7813 3.520317 TCGGGGTTCATGGTTTACAGTAT 59.480 43.478 0.00 0.00 0.00 2.12
7261 7817 4.398044 GGGTTCATGGTTTACAGTATGGTG 59.602 45.833 0.00 0.00 43.62 4.17
7263 7819 6.174760 GGTTCATGGTTTACAGTATGGTGTA 58.825 40.000 0.00 0.00 43.62 2.90
7265 7821 7.988599 GGTTCATGGTTTACAGTATGGTGTATA 59.011 37.037 0.00 0.00 43.62 1.47
7318 7891 5.419788 GGTCGGGTTTCTTGGGTATAAAATT 59.580 40.000 0.00 0.00 0.00 1.82
7320 7893 6.151480 GTCGGGTTTCTTGGGTATAAAATTGA 59.849 38.462 0.00 0.00 0.00 2.57
7380 7954 5.799827 TTTTGAGGGGTGATTTCGATTTT 57.200 34.783 0.00 0.00 0.00 1.82
7381 7955 5.799827 TTTGAGGGGTGATTTCGATTTTT 57.200 34.783 0.00 0.00 0.00 1.94
7382 7956 6.902771 TTTGAGGGGTGATTTCGATTTTTA 57.097 33.333 0.00 0.00 0.00 1.52
7384 7958 7.475137 TTGAGGGGTGATTTCGATTTTTATT 57.525 32.000 0.00 0.00 0.00 1.40
7387 7961 6.863275 AGGGGTGATTTCGATTTTTATTGAC 58.137 36.000 0.00 0.00 0.00 3.18
7397 7971 6.787225 TCGATTTTTATTGACAATTACCGGG 58.213 36.000 6.32 0.00 0.00 5.73
7403 7977 2.932855 TGACAATTACCGGGTGAACA 57.067 45.000 10.66 0.00 0.00 3.18
7415 7989 4.127171 CCGGGTGAACAGAAATTATCGAT 58.873 43.478 2.16 2.16 0.00 3.59
7420 7994 6.238484 GGGTGAACAGAAATTATCGATTGGAG 60.238 42.308 1.71 0.00 0.00 3.86
7427 8001 6.038603 CAGAAATTATCGATTGGAGGAAAGCA 59.961 38.462 1.71 0.00 0.00 3.91
7468 8042 1.165907 GCTGCTGGTGCTGTTGTACA 61.166 55.000 0.00 0.00 39.81 2.90
7478 8052 1.512926 CTGTTGTACAGTCCACCAGC 58.487 55.000 0.00 0.00 41.19 4.85
7479 8053 0.107831 TGTTGTACAGTCCACCAGCC 59.892 55.000 0.00 0.00 0.00 4.85
7480 8054 0.605589 GTTGTACAGTCCACCAGCCC 60.606 60.000 0.00 0.00 0.00 5.19
7481 8055 1.057275 TTGTACAGTCCACCAGCCCA 61.057 55.000 0.00 0.00 0.00 5.36
7482 8056 1.003718 GTACAGTCCACCAGCCCAC 60.004 63.158 0.00 0.00 0.00 4.61
7483 8057 2.221299 TACAGTCCACCAGCCCACC 61.221 63.158 0.00 0.00 0.00 4.61
7484 8058 2.974435 TACAGTCCACCAGCCCACCA 62.974 60.000 0.00 0.00 0.00 4.17
7485 8059 3.570212 AGTCCACCAGCCCACCAC 61.570 66.667 0.00 0.00 0.00 4.16
7486 8060 3.884774 GTCCACCAGCCCACCACA 61.885 66.667 0.00 0.00 0.00 4.17
7487 8061 3.884774 TCCACCAGCCCACCACAC 61.885 66.667 0.00 0.00 0.00 3.82
7488 8062 3.889692 CCACCAGCCCACCACACT 61.890 66.667 0.00 0.00 0.00 3.55
7489 8063 2.281761 CACCAGCCCACCACACTC 60.282 66.667 0.00 0.00 0.00 3.51
7490 8064 2.448542 ACCAGCCCACCACACTCT 60.449 61.111 0.00 0.00 0.00 3.24
7491 8065 2.348998 CCAGCCCACCACACTCTC 59.651 66.667 0.00 0.00 0.00 3.20
7492 8066 2.348998 CAGCCCACCACACTCTCC 59.651 66.667 0.00 0.00 0.00 3.71
7493 8067 2.930562 AGCCCACCACACTCTCCC 60.931 66.667 0.00 0.00 0.00 4.30
7494 8068 4.035102 GCCCACCACACTCTCCCC 62.035 72.222 0.00 0.00 0.00 4.81
7495 8069 2.203998 CCCACCACACTCTCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
7496 8070 2.294078 CCCACCACACTCTCCCCTC 61.294 68.421 0.00 0.00 0.00 4.30
7497 8071 1.536418 CCACCACACTCTCCCCTCA 60.536 63.158 0.00 0.00 0.00 3.86
7498 8072 1.127567 CCACCACACTCTCCCCTCAA 61.128 60.000 0.00 0.00 0.00 3.02
7499 8073 0.764890 CACCACACTCTCCCCTCAAA 59.235 55.000 0.00 0.00 0.00 2.69
7500 8074 1.142870 CACCACACTCTCCCCTCAAAA 59.857 52.381 0.00 0.00 0.00 2.44
7501 8075 1.850345 ACCACACTCTCCCCTCAAAAA 59.150 47.619 0.00 0.00 0.00 1.94
7530 8104 4.624364 CAGCCCACCACACGCTCA 62.624 66.667 0.00 0.00 0.00 4.26
7531 8105 4.626081 AGCCCACCACACGCTCAC 62.626 66.667 0.00 0.00 0.00 3.51
7534 8108 4.293648 CCACCACACGCTCACGGA 62.294 66.667 0.00 0.00 46.04 4.69
7535 8109 2.734723 CACCACACGCTCACGGAG 60.735 66.667 0.00 0.00 46.04 4.63
7536 8110 2.910479 ACCACACGCTCACGGAGA 60.910 61.111 5.24 0.00 46.04 3.71
7544 8118 4.504916 CTCACGGAGAGCTGGCGG 62.505 72.222 0.00 0.00 37.59 6.13
7549 8123 4.767255 GGAGAGCTGGCGGTGGTG 62.767 72.222 0.00 0.00 0.00 4.17
7550 8124 3.695606 GAGAGCTGGCGGTGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
7551 8125 3.655810 GAGAGCTGGCGGTGGTGAG 62.656 68.421 0.00 0.00 0.00 3.51
7603 8177 2.668280 GGAACGCAGCTTCGACCAC 61.668 63.158 13.98 0.56 33.06 4.16
7679 8256 1.414158 ATGTAGATGGTGGGGTCTCG 58.586 55.000 0.00 0.00 0.00 4.04
7688 8265 1.689233 TGGGGTCTCGAGGAATGGG 60.689 63.158 13.56 0.00 0.00 4.00
7689 8266 1.382695 GGGGTCTCGAGGAATGGGA 60.383 63.158 13.56 0.00 0.00 4.37
7690 8267 1.403687 GGGGTCTCGAGGAATGGGAG 61.404 65.000 13.56 0.00 0.00 4.30
7692 8269 1.710816 GGTCTCGAGGAATGGGAGAT 58.289 55.000 13.56 0.00 38.89 2.75
7695 8272 2.695666 GTCTCGAGGAATGGGAGATGAA 59.304 50.000 13.56 0.00 38.89 2.57
7697 8274 1.414181 TCGAGGAATGGGAGATGAAGC 59.586 52.381 0.00 0.00 0.00 3.86
7731 8337 3.134442 TGGGAGCTTCTGCAATTGTTTTT 59.866 39.130 7.40 0.00 42.74 1.94
7861 8467 5.913137 AGAGGTTTTGAACAACATCAACA 57.087 34.783 1.57 0.00 39.44 3.33
7866 8472 5.175127 GTTTTGAACAACATCAACAAGGGT 58.825 37.500 0.00 0.00 38.95 4.34
7956 8562 9.002080 GTTAAGTTTTCTTTCGAATTTCGTGAA 57.998 29.630 17.61 16.02 39.86 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.929836 CCTGATGTCGCTTGAAGCTAC 59.070 52.381 15.92 14.96 39.60 3.58
1 2 1.550524 ACCTGATGTCGCTTGAAGCTA 59.449 47.619 15.92 0.55 39.60 3.32
2 3 0.322975 ACCTGATGTCGCTTGAAGCT 59.677 50.000 15.92 0.00 39.60 3.74
3 4 0.723981 GACCTGATGTCGCTTGAAGC 59.276 55.000 7.20 7.20 38.02 3.86
4 5 1.338105 TGGACCTGATGTCGCTTGAAG 60.338 52.381 0.00 0.00 45.46 3.02
5 6 0.684535 TGGACCTGATGTCGCTTGAA 59.315 50.000 0.00 0.00 45.46 2.69
6 7 0.684535 TTGGACCTGATGTCGCTTGA 59.315 50.000 0.00 0.00 45.46 3.02
7 8 1.742761 ATTGGACCTGATGTCGCTTG 58.257 50.000 0.00 0.00 45.46 4.01
8 9 2.496899 AATTGGACCTGATGTCGCTT 57.503 45.000 0.00 0.00 45.46 4.68
9 10 3.270877 GTTAATTGGACCTGATGTCGCT 58.729 45.455 0.00 0.00 45.46 4.93
10 11 2.354821 GGTTAATTGGACCTGATGTCGC 59.645 50.000 5.77 0.00 45.46 5.19
11 12 2.943033 GGGTTAATTGGACCTGATGTCG 59.057 50.000 11.28 0.00 45.46 4.35
12 13 2.943033 CGGGTTAATTGGACCTGATGTC 59.057 50.000 13.64 0.00 44.70 3.06
13 14 2.574369 TCGGGTTAATTGGACCTGATGT 59.426 45.455 16.28 0.00 45.33 3.06
14 15 3.275617 TCGGGTTAATTGGACCTGATG 57.724 47.619 16.28 5.14 45.33 3.07
17 18 2.629051 GTCTCGGGTTAATTGGACCTG 58.371 52.381 12.97 12.97 43.54 4.00
18 19 1.206371 CGTCTCGGGTTAATTGGACCT 59.794 52.381 11.28 0.00 37.34 3.85
2238 2327 1.048601 AACGAGAGGACTTTGCAGGA 58.951 50.000 0.00 0.00 0.00 3.86
2240 2329 4.058817 ACTAAAACGAGAGGACTTTGCAG 58.941 43.478 0.00 0.00 0.00 4.41
2255 2344 3.240884 GAAGAGACGTCGGGACTAAAAC 58.759 50.000 10.46 0.00 0.00 2.43
2291 2380 2.191400 AGCCCAGCTCAAATCTCTGTA 58.809 47.619 0.00 0.00 30.62 2.74
2314 2405 6.492087 GAGAATCAGCTACCAGAAGGTATAGT 59.508 42.308 0.00 0.00 41.95 2.12
2315 2406 6.719370 AGAGAATCAGCTACCAGAAGGTATAG 59.281 42.308 0.00 0.00 43.76 1.31
2316 2407 6.615617 AGAGAATCAGCTACCAGAAGGTATA 58.384 40.000 0.00 0.00 43.76 1.47
2317 2408 5.463154 AGAGAATCAGCTACCAGAAGGTAT 58.537 41.667 0.00 0.00 43.76 2.73
2320 2411 4.161189 TGAAGAGAATCAGCTACCAGAAGG 59.839 45.833 0.00 0.00 37.82 3.46
2372 2464 5.508200 TTTCAACGCAAATGGAAGTAACT 57.492 34.783 0.00 0.00 0.00 2.24
2439 2531 0.471617 AGCACACTTCTGCCAAGTCT 59.528 50.000 0.00 0.00 37.96 3.24
2448 2540 1.765314 AGACCTCACAAGCACACTTCT 59.235 47.619 0.00 0.00 32.29 2.85
2965 3062 7.677892 AGTAAGCTTGCTAAGGGGTATATTAC 58.322 38.462 16.06 0.00 0.00 1.89
2987 3084 6.591935 AGTCATCAGGTTCAACAAAGAAGTA 58.408 36.000 0.00 0.00 0.00 2.24
3018 3115 5.122082 ACACAAAGAACATTTGCCAAAAGTG 59.878 36.000 0.00 0.00 32.93 3.16
3035 3132 7.063780 GCCAATTGAAGGAATAATCACACAAAG 59.936 37.037 7.12 0.00 0.00 2.77
3039 3136 6.038356 CAGCCAATTGAAGGAATAATCACAC 58.962 40.000 7.12 0.00 0.00 3.82
3042 3139 5.517924 TCCAGCCAATTGAAGGAATAATCA 58.482 37.500 7.12 0.00 0.00 2.57
3126 3223 3.922910 AGCGTAAAACTAAGACACCTCC 58.077 45.455 0.00 0.00 0.00 4.30
3130 3227 6.518736 GCAATGTTAGCGTAAAACTAAGACAC 59.481 38.462 0.00 0.00 30.48 3.67
3143 3240 5.411361 TCAACAATTAGAGCAATGTTAGCGT 59.589 36.000 0.00 0.00 37.01 5.07
3144 3241 5.734498 GTCAACAATTAGAGCAATGTTAGCG 59.266 40.000 0.00 0.00 37.01 4.26
3145 3242 6.846350 AGTCAACAATTAGAGCAATGTTAGC 58.154 36.000 0.00 0.00 0.00 3.09
3210 3307 9.177608 CATAGAGATGTTAATTTTCTTCCACCA 57.822 33.333 0.00 0.00 0.00 4.17
3349 3446 1.795162 GCACTGCATGATAACAACGGC 60.795 52.381 0.00 0.00 0.00 5.68
3387 3484 6.016276 ACGGTATTCAGTTTTCAGCTCATTTT 60.016 34.615 0.00 0.00 0.00 1.82
3388 3485 5.473504 ACGGTATTCAGTTTTCAGCTCATTT 59.526 36.000 0.00 0.00 0.00 2.32
3482 3580 8.687242 GCATACACATATCTCAGGTATAGCTTA 58.313 37.037 0.55 0.00 0.00 3.09
3531 3629 6.037786 TGAGGTTCATAGTTGTAGTCTTGG 57.962 41.667 0.00 0.00 0.00 3.61
3752 3851 3.007506 TCAAACAGCATCGTTTAGAGGGA 59.992 43.478 0.00 0.00 36.98 4.20
3818 3919 7.859875 CCAAGTTACTAGATACTAACGGCTTAC 59.140 40.741 0.00 0.00 0.00 2.34
4011 4112 8.618677 TCTGCTTCATAAAAGAGCTTGATAATG 58.381 33.333 0.00 0.00 0.00 1.90
4088 4189 5.746990 AGCAAATACAGTGACTAAGGACT 57.253 39.130 0.00 0.00 0.00 3.85
4152 4253 8.807581 GCAGCCATACAATAAAACAAATAAGAC 58.192 33.333 0.00 0.00 0.00 3.01
4236 4341 5.794687 TTAGTACAATCCTGCGACAATTG 57.205 39.130 3.24 3.24 36.64 2.32
4272 4377 4.282496 ACATACTCCCTCCGATCCATATC 58.718 47.826 0.00 0.00 0.00 1.63
4337 4443 6.393990 GGTGTTGTGTTGGCATAAATAATCA 58.606 36.000 0.00 0.00 0.00 2.57
4395 4501 8.426881 TGCATGGATGTGAAAATTCAAATATG 57.573 30.769 0.00 2.71 35.32 1.78
4549 4656 6.402983 GCATTGCAAGATATATAGCAGACACC 60.403 42.308 4.94 0.00 38.35 4.16
4639 4746 2.694109 CTCAGTCTCATCAGGATCAGCA 59.306 50.000 0.00 0.00 0.00 4.41
4772 4879 0.107831 TCAAGGACAAGGGTGGTTCG 59.892 55.000 0.00 0.00 0.00 3.95
4922 5029 3.385115 AGGGGGTAATGTAGAGAAGTGG 58.615 50.000 0.00 0.00 0.00 4.00
4925 5032 5.959583 AAAGAGGGGGTAATGTAGAGAAG 57.040 43.478 0.00 0.00 0.00 2.85
4939 5046 3.282885 GCTCATAACAGGAAAAGAGGGG 58.717 50.000 0.00 0.00 0.00 4.79
4990 5097 7.176865 CGGAGGGAGTACTAAAGATATTGATCA 59.823 40.741 0.00 0.00 34.17 2.92
5000 5107 1.682323 GAGGCGGAGGGAGTACTAAAG 59.318 57.143 0.00 0.00 0.00 1.85
5004 5111 0.252103 TTTGAGGCGGAGGGAGTACT 60.252 55.000 0.00 0.00 0.00 2.73
5005 5112 0.611714 TTTTGAGGCGGAGGGAGTAC 59.388 55.000 0.00 0.00 0.00 2.73
5006 5113 1.580059 ATTTTGAGGCGGAGGGAGTA 58.420 50.000 0.00 0.00 0.00 2.59
5007 5114 0.698818 AATTTTGAGGCGGAGGGAGT 59.301 50.000 0.00 0.00 0.00 3.85
5008 5115 1.065126 AGAATTTTGAGGCGGAGGGAG 60.065 52.381 0.00 0.00 0.00 4.30
5009 5116 0.991920 AGAATTTTGAGGCGGAGGGA 59.008 50.000 0.00 0.00 0.00 4.20
5010 5117 1.474077 CAAGAATTTTGAGGCGGAGGG 59.526 52.381 0.00 0.00 0.00 4.30
5011 5118 2.162408 GACAAGAATTTTGAGGCGGAGG 59.838 50.000 7.18 0.00 0.00 4.30
5012 5119 3.077359 AGACAAGAATTTTGAGGCGGAG 58.923 45.455 7.18 0.00 0.00 4.63
5013 5120 3.140325 AGACAAGAATTTTGAGGCGGA 57.860 42.857 7.18 0.00 0.00 5.54
5014 5121 3.923017 AAGACAAGAATTTTGAGGCGG 57.077 42.857 7.18 0.00 0.00 6.13
5015 5122 5.409826 ACTCTAAGACAAGAATTTTGAGGCG 59.590 40.000 7.18 0.00 31.11 5.52
5016 5123 6.401581 CGACTCTAAGACAAGAATTTTGAGGC 60.402 42.308 7.18 0.00 31.26 4.70
5017 5124 6.647067 ACGACTCTAAGACAAGAATTTTGAGG 59.353 38.462 0.00 0.00 31.11 3.86
5018 5125 7.596995 AGACGACTCTAAGACAAGAATTTTGAG 59.403 37.037 0.00 0.00 32.46 3.02
5019 5126 7.434492 AGACGACTCTAAGACAAGAATTTTGA 58.566 34.615 0.00 0.00 0.00 2.69
5020 5127 7.644986 AGACGACTCTAAGACAAGAATTTTG 57.355 36.000 0.00 0.00 0.00 2.44
5021 5128 8.794553 TCTAGACGACTCTAAGACAAGAATTTT 58.205 33.333 0.00 0.00 0.00 1.82
5022 5129 8.338072 TCTAGACGACTCTAAGACAAGAATTT 57.662 34.615 0.00 0.00 0.00 1.82
5023 5130 7.925043 TCTAGACGACTCTAAGACAAGAATT 57.075 36.000 0.00 0.00 0.00 2.17
5024 5131 9.048446 GTATCTAGACGACTCTAAGACAAGAAT 57.952 37.037 0.00 0.00 0.00 2.40
5025 5132 7.222417 CGTATCTAGACGACTCTAAGACAAGAA 59.778 40.741 0.00 0.00 45.82 2.52
5026 5133 6.696583 CGTATCTAGACGACTCTAAGACAAGA 59.303 42.308 0.00 0.00 45.82 3.02
5027 5134 6.074195 CCGTATCTAGACGACTCTAAGACAAG 60.074 46.154 5.60 0.00 45.82 3.16
5028 5135 5.752472 CCGTATCTAGACGACTCTAAGACAA 59.248 44.000 5.60 0.00 45.82 3.18
5029 5136 5.068329 TCCGTATCTAGACGACTCTAAGACA 59.932 44.000 5.60 0.00 45.82 3.41
5030 5137 5.527951 TCCGTATCTAGACGACTCTAAGAC 58.472 45.833 5.60 0.00 45.82 3.01
5031 5138 5.781210 TCCGTATCTAGACGACTCTAAGA 57.219 43.478 5.60 0.00 45.82 2.10
5032 5139 5.927689 ACATCCGTATCTAGACGACTCTAAG 59.072 44.000 5.60 0.00 45.82 2.18
5033 5140 5.851720 ACATCCGTATCTAGACGACTCTAA 58.148 41.667 5.60 0.00 45.82 2.10
5034 5141 5.465532 ACATCCGTATCTAGACGACTCTA 57.534 43.478 5.60 0.00 45.82 2.43
5035 5142 4.339872 ACATCCGTATCTAGACGACTCT 57.660 45.455 5.60 0.00 45.82 3.24
5062 5169 9.241317 CGGATGTATCAAGTAACGTTTTAGTAT 57.759 33.333 5.91 0.00 0.00 2.12
5063 5170 8.243426 ACGGATGTATCAAGTAACGTTTTAGTA 58.757 33.333 5.91 0.00 0.00 1.82
5064 5171 7.092716 ACGGATGTATCAAGTAACGTTTTAGT 58.907 34.615 5.91 0.00 0.00 2.24
5065 5172 7.515957 ACGGATGTATCAAGTAACGTTTTAG 57.484 36.000 5.91 0.00 0.00 1.85
5066 5173 9.585099 AATACGGATGTATCAAGTAACGTTTTA 57.415 29.630 5.91 0.00 40.42 1.52
5067 5174 8.483307 AATACGGATGTATCAAGTAACGTTTT 57.517 30.769 5.91 0.00 40.42 2.43
5068 5175 8.483307 AAATACGGATGTATCAAGTAACGTTT 57.517 30.769 5.91 0.00 40.42 3.60
5069 5176 9.241317 CTAAATACGGATGTATCAAGTAACGTT 57.759 33.333 5.88 5.88 40.42 3.99
5070 5177 8.623903 TCTAAATACGGATGTATCAAGTAACGT 58.376 33.333 0.00 0.00 40.42 3.99
5071 5178 8.899776 GTCTAAATACGGATGTATCAAGTAACG 58.100 37.037 0.00 0.00 40.42 3.18
5072 5179 9.740239 TGTCTAAATACGGATGTATCAAGTAAC 57.260 33.333 0.00 0.72 40.42 2.50
5075 5182 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
5098 5205 9.463443 CCGTCTCAAAATTCTTGTCTTAAATTT 57.537 29.630 0.00 0.00 34.86 1.82
5099 5206 8.846211 TCCGTCTCAAAATTCTTGTCTTAAATT 58.154 29.630 0.00 0.00 0.00 1.82
5100 5207 8.391075 TCCGTCTCAAAATTCTTGTCTTAAAT 57.609 30.769 0.00 0.00 0.00 1.40
5101 5208 7.041372 CCTCCGTCTCAAAATTCTTGTCTTAAA 60.041 37.037 0.00 0.00 0.00 1.52
5102 5209 6.426937 CCTCCGTCTCAAAATTCTTGTCTTAA 59.573 38.462 0.00 0.00 0.00 1.85
5103 5210 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
5104 5211 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
5105 5212 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
5106 5213 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
5107 5214 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
5108 5215 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
5109 5216 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
5110 5217 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
5111 5218 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
5112 5219 3.581332 TGTACTCCCTCCGTCTCAAAATT 59.419 43.478 0.00 0.00 0.00 1.82
5113 5220 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
5114 5221 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
5115 5222 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
5116 5223 2.168496 CTTGTACTCCCTCCGTCTCAA 58.832 52.381 0.00 0.00 0.00 3.02
5117 5224 1.353358 TCTTGTACTCCCTCCGTCTCA 59.647 52.381 0.00 0.00 0.00 3.27
5118 5225 2.018515 CTCTTGTACTCCCTCCGTCTC 58.981 57.143 0.00 0.00 0.00 3.36
5119 5226 1.634459 TCTCTTGTACTCCCTCCGTCT 59.366 52.381 0.00 0.00 0.00 4.18
5120 5227 2.018515 CTCTCTTGTACTCCCTCCGTC 58.981 57.143 0.00 0.00 0.00 4.79
5121 5228 1.634459 TCTCTCTTGTACTCCCTCCGT 59.366 52.381 0.00 0.00 0.00 4.69
5122 5229 2.421751 TCTCTCTTGTACTCCCTCCG 57.578 55.000 0.00 0.00 0.00 4.63
5123 5230 3.432378 TGTTCTCTCTTGTACTCCCTCC 58.568 50.000 0.00 0.00 0.00 4.30
5124 5231 4.707448 TGATGTTCTCTCTTGTACTCCCTC 59.293 45.833 0.00 0.00 0.00 4.30
5125 5232 4.678256 TGATGTTCTCTCTTGTACTCCCT 58.322 43.478 0.00 0.00 0.00 4.20
5126 5233 5.407407 TTGATGTTCTCTCTTGTACTCCC 57.593 43.478 0.00 0.00 0.00 4.30
5127 5234 8.035394 TGTAATTGATGTTCTCTCTTGTACTCC 58.965 37.037 0.00 0.00 0.00 3.85
5128 5235 8.988064 TGTAATTGATGTTCTCTCTTGTACTC 57.012 34.615 0.00 0.00 0.00 2.59
5141 5248 6.534475 AACTGGATGCATGTAATTGATGTT 57.466 33.333 2.46 0.00 0.00 2.71
5158 5265 0.251165 GCACCCTTGCCTTAACTGGA 60.251 55.000 0.00 0.00 43.66 3.86
5159 5266 2.267045 GCACCCTTGCCTTAACTGG 58.733 57.895 0.00 0.00 43.66 4.00
5216 5329 7.624360 TTTCATCTGCCATTACTATTCGTTT 57.376 32.000 0.00 0.00 0.00 3.60
5257 5766 6.539173 ACCCATAAGACTAACAAACATGTGA 58.461 36.000 0.00 0.00 0.00 3.58
5279 5788 5.762825 AATGATGATCATGTTGCAGTACC 57.237 39.130 14.30 0.00 37.15 3.34
5355 5872 8.565416 ACTTGGCTAACATTAAGTAACAAGTTC 58.435 33.333 0.00 0.00 42.07 3.01
5372 5889 2.896685 CCACAAAATCCCACTTGGCTAA 59.103 45.455 0.00 0.00 0.00 3.09
5384 5902 0.388659 TGGTGCACAGCCACAAAATC 59.611 50.000 20.43 0.00 37.46 2.17
5459 5977 8.749026 TGGTTACAAATAAGAACTAACACCAA 57.251 30.769 0.00 0.00 0.00 3.67
5506 6024 6.877322 GCTTCAGGTTAGGTTAACACTGAATA 59.123 38.462 20.42 9.79 44.77 1.75
5713 6231 6.968263 TCTGCATAGATACTTTGACTAGCT 57.032 37.500 0.00 0.00 0.00 3.32
5824 6342 6.828785 GCCCAAGAACAGATAGATCCTTTAAA 59.171 38.462 0.00 0.00 0.00 1.52
5926 6445 8.622948 AAATTCGAACAGGAGAAAGAACTAAT 57.377 30.769 0.00 0.00 0.00 1.73
5933 6452 6.017109 TCCAGAAAAATTCGAACAGGAGAAAG 60.017 38.462 0.00 0.00 34.02 2.62
5937 6456 5.689383 TTCCAGAAAAATTCGAACAGGAG 57.311 39.130 0.00 0.00 34.02 3.69
6025 6544 9.958180 GGGTTTTTACCCTACTGTTTATAGTAA 57.042 33.333 6.11 0.00 46.39 2.24
6041 6560 2.817844 CTGTAGCAGTGGGGTTTTTACC 59.182 50.000 0.00 0.00 0.00 2.85
6042 6561 2.228103 GCTGTAGCAGTGGGGTTTTTAC 59.772 50.000 0.00 0.00 41.59 2.01
6043 6562 2.107552 AGCTGTAGCAGTGGGGTTTTTA 59.892 45.455 6.65 0.00 45.16 1.52
6044 6563 1.133482 AGCTGTAGCAGTGGGGTTTTT 60.133 47.619 6.65 0.00 45.16 1.94
6045 6564 0.478507 AGCTGTAGCAGTGGGGTTTT 59.521 50.000 6.65 0.00 45.16 2.43
6046 6565 0.036875 GAGCTGTAGCAGTGGGGTTT 59.963 55.000 6.65 0.00 45.16 3.27
6047 6566 1.127567 TGAGCTGTAGCAGTGGGGTT 61.128 55.000 6.65 0.00 45.16 4.11
6048 6567 1.127567 TTGAGCTGTAGCAGTGGGGT 61.128 55.000 6.65 0.00 45.16 4.95
6049 6568 0.254178 ATTGAGCTGTAGCAGTGGGG 59.746 55.000 6.65 0.00 45.16 4.96
6050 6569 2.119801 AATTGAGCTGTAGCAGTGGG 57.880 50.000 6.65 0.00 45.16 4.61
6051 6570 5.220931 GGATAAAATTGAGCTGTAGCAGTGG 60.221 44.000 6.65 0.00 45.16 4.00
6052 6571 5.587844 AGGATAAAATTGAGCTGTAGCAGTG 59.412 40.000 6.65 0.00 45.16 3.66
6053 6572 5.587844 CAGGATAAAATTGAGCTGTAGCAGT 59.412 40.000 6.65 0.00 45.16 4.40
6054 6573 5.008415 CCAGGATAAAATTGAGCTGTAGCAG 59.992 44.000 6.65 0.00 45.16 4.24
6055 6574 4.883585 CCAGGATAAAATTGAGCTGTAGCA 59.116 41.667 6.65 0.00 45.16 3.49
6056 6575 4.884164 ACCAGGATAAAATTGAGCTGTAGC 59.116 41.667 0.00 0.00 42.49 3.58
6057 6576 7.396540 AAACCAGGATAAAATTGAGCTGTAG 57.603 36.000 0.00 0.00 0.00 2.74
6058 6577 8.902806 CATAAACCAGGATAAAATTGAGCTGTA 58.097 33.333 0.00 0.00 0.00 2.74
6059 6578 7.147846 CCATAAACCAGGATAAAATTGAGCTGT 60.148 37.037 0.00 0.00 0.00 4.40
6060 6579 7.147846 ACCATAAACCAGGATAAAATTGAGCTG 60.148 37.037 0.00 0.00 0.00 4.24
6061 6580 6.897413 ACCATAAACCAGGATAAAATTGAGCT 59.103 34.615 0.00 0.00 0.00 4.09
6062 6581 7.112452 ACCATAAACCAGGATAAAATTGAGC 57.888 36.000 0.00 0.00 0.00 4.26
6121 6648 8.173775 GGATAGATCATTCATGTTGCTATTTCG 58.826 37.037 0.00 0.00 0.00 3.46
6141 6668 7.255730 GCCAGTAAGATAGGTTTTACGGATAGA 60.256 40.741 0.00 0.00 35.47 1.98
6168 6695 6.269307 ACTGAAGGAAACTAGTTAAGGCACTA 59.731 38.462 8.92 0.00 42.68 2.74
6182 6709 6.310467 GTGAAAGGTTCAAAACTGAAGGAAAC 59.690 38.462 0.00 0.00 42.15 2.78
6317 6845 0.951040 GAGGAGCCACAACAGGAACG 60.951 60.000 0.00 0.00 0.00 3.95
6377 6905 3.414269 TGAGAATCTCATTGCACAGCAA 58.586 40.909 9.18 6.90 44.69 3.91
6421 6949 4.497966 GGAAACTCGTTGCTACACAAAAAC 59.502 41.667 0.00 0.00 40.82 2.43
6436 6964 3.623510 GCAGAGAATAAAGGGGAAACTCG 59.376 47.826 0.00 0.00 34.16 4.18
6459 6987 7.435305 TGCTAACATGTGTGTTTGTAGTACTA 58.565 34.615 0.00 0.00 46.07 1.82
6480 7008 3.102972 AGACCTCTTGCTTCATCTGCTA 58.897 45.455 0.00 0.00 0.00 3.49
6753 7281 5.580297 TGATTGCCTGTTTTTGTTTTCTGTC 59.420 36.000 0.00 0.00 0.00 3.51
6764 7292 2.287788 CGAGCACTTGATTGCCTGTTTT 60.288 45.455 0.00 0.00 44.14 2.43
6765 7293 1.267806 CGAGCACTTGATTGCCTGTTT 59.732 47.619 0.00 0.00 44.14 2.83
6766 7294 0.877071 CGAGCACTTGATTGCCTGTT 59.123 50.000 0.00 0.00 44.14 3.16
6767 7295 0.250467 ACGAGCACTTGATTGCCTGT 60.250 50.000 0.00 0.00 44.14 4.00
6768 7296 1.725641 TACGAGCACTTGATTGCCTG 58.274 50.000 0.00 0.00 44.14 4.85
6769 7297 2.350522 CTTACGAGCACTTGATTGCCT 58.649 47.619 0.00 0.00 44.14 4.75
6847 7375 2.338620 CGTCTGTCTGGCGGTTCA 59.661 61.111 0.00 0.00 40.56 3.18
6898 7430 3.199289 AGGTTCCCTAAAGATTACCGGTG 59.801 47.826 19.93 0.00 28.47 4.94
6960 7493 1.375908 ATCGCGCAACATGGTCACT 60.376 52.632 8.75 0.00 0.00 3.41
6967 7500 2.717485 GCATCCATCGCGCAACAT 59.283 55.556 8.75 0.00 0.00 2.71
7019 7556 4.050553 AGCACAACAAATTCCGACAAATG 58.949 39.130 0.00 0.00 0.00 2.32
7043 7580 2.490328 TGCTGCAACACAACTTTAGC 57.510 45.000 0.00 0.00 0.00 3.09
7084 7622 4.006319 AGCTAAAATCCTCACTGACTTGC 58.994 43.478 0.00 0.00 0.00 4.01
7101 7643 4.540359 AAAATGCTCAATTGGCAGCTAA 57.460 36.364 21.00 0.00 43.15 3.09
7122 7664 6.691255 ATTACCACCGGGATATAAAAGCTA 57.309 37.500 6.32 0.00 38.05 3.32
7137 7680 4.448060 GCAGACGAAAGCTATATTACCACC 59.552 45.833 0.00 0.00 0.00 4.61
7143 7686 3.557595 GCACAGCAGACGAAAGCTATATT 59.442 43.478 0.00 0.00 39.50 1.28
7236 7792 2.194201 ACTGTAAACCATGAACCCCG 57.806 50.000 0.00 0.00 0.00 5.73
7237 7793 3.951680 CCATACTGTAAACCATGAACCCC 59.048 47.826 0.00 0.00 0.00 4.95
7238 7794 4.398044 CACCATACTGTAAACCATGAACCC 59.602 45.833 0.00 0.00 0.00 4.11
7274 7830 9.534565 CCCGACCATTGTATGATCTTTATATAG 57.465 37.037 0.00 0.00 0.00 1.31
7275 7831 9.042450 ACCCGACCATTGTATGATCTTTATATA 57.958 33.333 0.00 0.00 0.00 0.86
7276 7832 7.918076 ACCCGACCATTGTATGATCTTTATAT 58.082 34.615 0.00 0.00 0.00 0.86
7278 7834 6.187727 ACCCGACCATTGTATGATCTTTAT 57.812 37.500 0.00 0.00 0.00 1.40
7280 7836 4.503714 ACCCGACCATTGTATGATCTTT 57.496 40.909 0.00 0.00 0.00 2.52
7281 7837 4.503714 AACCCGACCATTGTATGATCTT 57.496 40.909 0.00 0.00 0.00 2.40
7282 7838 4.164221 AGAAACCCGACCATTGTATGATCT 59.836 41.667 0.00 0.00 0.00 2.75
7283 7839 4.451900 AGAAACCCGACCATTGTATGATC 58.548 43.478 0.00 0.00 0.00 2.92
7284 7840 4.503714 AGAAACCCGACCATTGTATGAT 57.496 40.909 0.00 0.00 0.00 2.45
7287 7843 3.352648 CCAAGAAACCCGACCATTGTAT 58.647 45.455 0.00 0.00 0.00 2.29
7298 7871 9.733556 AAAATCAATTTTATACCCAAGAAACCC 57.266 29.630 0.00 0.00 38.14 4.11
7360 7934 7.177568 TCAATAAAAATCGAAATCACCCCTCAA 59.822 33.333 0.00 0.00 0.00 3.02
7362 7936 6.972901 GTCAATAAAAATCGAAATCACCCCTC 59.027 38.462 0.00 0.00 0.00 4.30
7363 7937 6.435904 TGTCAATAAAAATCGAAATCACCCCT 59.564 34.615 0.00 0.00 0.00 4.79
7364 7938 6.626302 TGTCAATAAAAATCGAAATCACCCC 58.374 36.000 0.00 0.00 0.00 4.95
7365 7939 8.702163 ATTGTCAATAAAAATCGAAATCACCC 57.298 30.769 0.00 0.00 0.00 4.61
7370 7944 9.296400 CCGGTAATTGTCAATAAAAATCGAAAT 57.704 29.630 0.00 0.00 0.00 2.17
7372 7946 7.094291 ACCCGGTAATTGTCAATAAAAATCGAA 60.094 33.333 0.00 0.00 0.00 3.71
7373 7947 6.374894 ACCCGGTAATTGTCAATAAAAATCGA 59.625 34.615 0.00 0.00 0.00 3.59
7374 7948 6.470877 CACCCGGTAATTGTCAATAAAAATCG 59.529 38.462 0.00 0.00 0.00 3.34
7375 7949 7.540299 TCACCCGGTAATTGTCAATAAAAATC 58.460 34.615 0.00 0.00 0.00 2.17
7376 7950 7.469537 TCACCCGGTAATTGTCAATAAAAAT 57.530 32.000 0.00 0.00 0.00 1.82
7380 7954 5.314529 TGTTCACCCGGTAATTGTCAATAA 58.685 37.500 0.00 0.00 0.00 1.40
7381 7955 4.907809 TGTTCACCCGGTAATTGTCAATA 58.092 39.130 0.00 0.00 0.00 1.90
7382 7956 3.756434 CTGTTCACCCGGTAATTGTCAAT 59.244 43.478 0.00 0.00 0.00 2.57
7384 7958 2.369203 TCTGTTCACCCGGTAATTGTCA 59.631 45.455 0.00 0.00 0.00 3.58
7387 7961 5.385509 AATTTCTGTTCACCCGGTAATTG 57.614 39.130 0.00 0.00 0.00 2.32
7392 7966 3.055675 TCGATAATTTCTGTTCACCCGGT 60.056 43.478 0.00 0.00 0.00 5.28
7394 7968 5.501715 CAATCGATAATTTCTGTTCACCCG 58.498 41.667 0.00 0.00 0.00 5.28
7397 7971 6.538742 TCCTCCAATCGATAATTTCTGTTCAC 59.461 38.462 0.00 0.00 0.00 3.18
7403 7977 6.038714 GTGCTTTCCTCCAATCGATAATTTCT 59.961 38.462 0.00 0.00 0.00 2.52
7415 7989 1.228552 GGGCTGTGCTTTCCTCCAA 60.229 57.895 0.00 0.00 0.00 3.53
7468 8042 3.570212 GTGGTGGGCTGGTGGACT 61.570 66.667 0.00 0.00 0.00 3.85
7472 8046 2.281761 GAGTGTGGTGGGCTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
7473 8047 2.448542 AGAGTGTGGTGGGCTGGT 60.449 61.111 0.00 0.00 0.00 4.00
7474 8048 2.348998 GAGAGTGTGGTGGGCTGG 59.651 66.667 0.00 0.00 0.00 4.85
7475 8049 2.348998 GGAGAGTGTGGTGGGCTG 59.651 66.667 0.00 0.00 0.00 4.85
7476 8050 2.930562 GGGAGAGTGTGGTGGGCT 60.931 66.667 0.00 0.00 0.00 5.19
7477 8051 4.035102 GGGGAGAGTGTGGTGGGC 62.035 72.222 0.00 0.00 0.00 5.36
7478 8052 2.203998 AGGGGAGAGTGTGGTGGG 60.204 66.667 0.00 0.00 0.00 4.61
7479 8053 1.127567 TTGAGGGGAGAGTGTGGTGG 61.128 60.000 0.00 0.00 0.00 4.61
7480 8054 0.764890 TTTGAGGGGAGAGTGTGGTG 59.235 55.000 0.00 0.00 0.00 4.17
7481 8055 1.518367 TTTTGAGGGGAGAGTGTGGT 58.482 50.000 0.00 0.00 0.00 4.16
7482 8056 2.656947 TTTTTGAGGGGAGAGTGTGG 57.343 50.000 0.00 0.00 0.00 4.17
7507 8081 1.671901 CGTGTGGTGGGCTGGTTTTT 61.672 55.000 0.00 0.00 0.00 1.94
7508 8082 2.124693 CGTGTGGTGGGCTGGTTTT 61.125 57.895 0.00 0.00 0.00 2.43
7509 8083 2.518349 CGTGTGGTGGGCTGGTTT 60.518 61.111 0.00 0.00 0.00 3.27
7532 8106 4.767255 CACCACCGCCAGCTCTCC 62.767 72.222 0.00 0.00 0.00 3.71
7533 8107 3.655810 CTCACCACCGCCAGCTCTC 62.656 68.421 0.00 0.00 0.00 3.20
7534 8108 3.699894 CTCACCACCGCCAGCTCT 61.700 66.667 0.00 0.00 0.00 4.09
7596 8170 4.357947 GGTGCGCTCTGTGGTCGA 62.358 66.667 9.73 0.00 0.00 4.20
7603 8177 1.739562 GTCCTCTTGGTGCGCTCTG 60.740 63.158 9.73 0.09 34.23 3.35
7638 8212 2.901051 ATCTTCGCGTTAGTGGCCGG 62.901 60.000 5.77 0.00 0.00 6.13
7679 8256 1.542108 CCGCTTCATCTCCCATTCCTC 60.542 57.143 0.00 0.00 0.00 3.71
7716 8322 3.814283 GGCCATCAAAAACAATTGCAGAA 59.186 39.130 5.05 0.00 0.00 3.02
7731 8337 1.131638 GTGGATCCACTAGGCCATCA 58.868 55.000 33.47 0.00 43.12 3.07
7861 8467 4.335647 CACAGGCGCTCCACCCTT 62.336 66.667 7.64 0.00 33.74 3.95
7866 8472 2.238847 GACCATACACAGGCGCTCCA 62.239 60.000 7.64 0.00 33.74 3.86
7951 8557 4.105486 TGAGCTTCATAGTTCGATTCACG 58.895 43.478 0.00 0.00 44.09 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.