Multiple sequence alignment - TraesCS4A01G338700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G338700 chr4A 100.000 2531 0 0 1 2531 620585483 620588013 0.000000e+00 4674.0
1 TraesCS4A01G338700 chr4A 99.086 1969 16 1 563 2531 724630114 724632080 0.000000e+00 3535.0
2 TraesCS4A01G338700 chr4B 99.238 1969 14 1 563 2531 437234399 437236366 0.000000e+00 3552.0
3 TraesCS4A01G338700 chr7B 99.187 1969 14 1 563 2531 697603941 697601975 0.000000e+00 3546.0
4 TraesCS4A01G338700 chr6A 99.086 1969 16 1 563 2531 593775859 593773893 0.000000e+00 3535.0
5 TraesCS4A01G338700 chr7A 99.037 1972 16 1 560 2531 40032041 40034009 0.000000e+00 3533.0
6 TraesCS4A01G338700 chr7A 98.933 1969 18 1 563 2531 18280882 18278917 0.000000e+00 3517.0
7 TraesCS4A01G338700 chr7A 98.885 1973 17 3 559 2531 686635015 686636982 0.000000e+00 3517.0
8 TraesCS4A01G338700 chr3A 99.035 1969 12 3 563 2531 658743970 658742009 0.000000e+00 3524.0
9 TraesCS4A01G338700 chr5B 98.933 1969 18 1 563 2531 705811763 705813728 0.000000e+00 3517.0
10 TraesCS4A01G338700 chr2D 84.158 101 12 1 138 238 6124700 6124604 7.450000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G338700 chr4A 620585483 620588013 2530 False 4674 4674 100.000 1 2531 1 chr4A.!!$F1 2530
1 TraesCS4A01G338700 chr4A 724630114 724632080 1966 False 3535 3535 99.086 563 2531 1 chr4A.!!$F2 1968
2 TraesCS4A01G338700 chr4B 437234399 437236366 1967 False 3552 3552 99.238 563 2531 1 chr4B.!!$F1 1968
3 TraesCS4A01G338700 chr7B 697601975 697603941 1966 True 3546 3546 99.187 563 2531 1 chr7B.!!$R1 1968
4 TraesCS4A01G338700 chr6A 593773893 593775859 1966 True 3535 3535 99.086 563 2531 1 chr6A.!!$R1 1968
5 TraesCS4A01G338700 chr7A 40032041 40034009 1968 False 3533 3533 99.037 560 2531 1 chr7A.!!$F1 1971
6 TraesCS4A01G338700 chr7A 18278917 18280882 1965 True 3517 3517 98.933 563 2531 1 chr7A.!!$R1 1968
7 TraesCS4A01G338700 chr7A 686635015 686636982 1967 False 3517 3517 98.885 559 2531 1 chr7A.!!$F2 1972
8 TraesCS4A01G338700 chr3A 658742009 658743970 1961 True 3524 3524 99.035 563 2531 1 chr3A.!!$R1 1968
9 TraesCS4A01G338700 chr5B 705811763 705813728 1965 False 3517 3517 98.933 563 2531 1 chr5B.!!$F1 1968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.028374 AGAAACACGAAAAACCCGCG 59.972 50.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1765 0.827507 ATTCGGCAGCCCAGTTTTGT 60.828 50.0 5.63 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.571757 CGCCAGCACGGAGAAGTA 59.428 61.111 0.00 0.00 36.49 2.24
31 32 1.141881 CGCCAGCACGGAGAAGTAT 59.858 57.895 0.00 0.00 36.49 2.12
32 33 1.148157 CGCCAGCACGGAGAAGTATG 61.148 60.000 0.00 0.00 36.49 2.39
33 34 0.811616 GCCAGCACGGAGAAGTATGG 60.812 60.000 0.00 0.00 36.56 2.74
34 35 0.179073 CCAGCACGGAGAAGTATGGG 60.179 60.000 0.00 0.00 36.56 4.00
35 36 0.179073 CAGCACGGAGAAGTATGGGG 60.179 60.000 0.00 0.00 0.00 4.96
36 37 0.325296 AGCACGGAGAAGTATGGGGA 60.325 55.000 0.00 0.00 0.00 4.81
37 38 0.539986 GCACGGAGAAGTATGGGGAA 59.460 55.000 0.00 0.00 0.00 3.97
38 39 1.473434 GCACGGAGAAGTATGGGGAAG 60.473 57.143 0.00 0.00 0.00 3.46
39 40 1.831736 CACGGAGAAGTATGGGGAAGT 59.168 52.381 0.00 0.00 0.00 3.01
40 41 2.236395 CACGGAGAAGTATGGGGAAGTT 59.764 50.000 0.00 0.00 0.00 2.66
41 42 2.236395 ACGGAGAAGTATGGGGAAGTTG 59.764 50.000 0.00 0.00 0.00 3.16
42 43 2.420129 CGGAGAAGTATGGGGAAGTTGG 60.420 54.545 0.00 0.00 0.00 3.77
43 44 2.644676 GAGAAGTATGGGGAAGTTGGC 58.355 52.381 0.00 0.00 0.00 4.52
44 45 1.065418 AGAAGTATGGGGAAGTTGGCG 60.065 52.381 0.00 0.00 0.00 5.69
45 46 0.696501 AAGTATGGGGAAGTTGGCGT 59.303 50.000 0.00 0.00 0.00 5.68
46 47 0.252197 AGTATGGGGAAGTTGGCGTC 59.748 55.000 0.00 0.00 0.00 5.19
47 48 0.035820 GTATGGGGAAGTTGGCGTCA 60.036 55.000 0.00 0.00 0.00 4.35
48 49 0.693622 TATGGGGAAGTTGGCGTCAA 59.306 50.000 0.00 0.00 0.00 3.18
49 50 0.609131 ATGGGGAAGTTGGCGTCAAG 60.609 55.000 0.75 0.00 32.92 3.02
50 51 1.971695 GGGGAAGTTGGCGTCAAGG 60.972 63.158 0.75 0.00 32.92 3.61
51 52 1.072505 GGGAAGTTGGCGTCAAGGA 59.927 57.895 0.75 0.00 32.92 3.36
52 53 0.955919 GGGAAGTTGGCGTCAAGGAG 60.956 60.000 0.75 0.00 32.92 3.69
53 54 0.250338 GGAAGTTGGCGTCAAGGAGT 60.250 55.000 0.75 0.00 32.92 3.85
54 55 1.594331 GAAGTTGGCGTCAAGGAGTT 58.406 50.000 0.75 0.00 32.92 3.01
55 56 1.264288 GAAGTTGGCGTCAAGGAGTTG 59.736 52.381 0.75 0.00 32.92 3.16
56 57 0.535102 AGTTGGCGTCAAGGAGTTGG 60.535 55.000 0.75 0.00 34.09 3.77
57 58 1.228124 TTGGCGTCAAGGAGTTGGG 60.228 57.895 0.00 0.00 34.09 4.12
58 59 1.701031 TTGGCGTCAAGGAGTTGGGA 61.701 55.000 0.00 0.00 34.09 4.37
59 60 1.376037 GGCGTCAAGGAGTTGGGAG 60.376 63.158 0.00 0.00 34.09 4.30
60 61 2.035442 GCGTCAAGGAGTTGGGAGC 61.035 63.158 0.00 0.00 34.09 4.70
61 62 1.674057 CGTCAAGGAGTTGGGAGCT 59.326 57.895 0.00 0.00 34.09 4.09
62 63 0.035458 CGTCAAGGAGTTGGGAGCTT 59.965 55.000 0.00 0.00 34.09 3.74
63 64 1.814793 GTCAAGGAGTTGGGAGCTTC 58.185 55.000 0.00 0.00 34.09 3.86
64 65 1.072331 GTCAAGGAGTTGGGAGCTTCA 59.928 52.381 0.00 0.00 34.09 3.02
65 66 1.774254 TCAAGGAGTTGGGAGCTTCAA 59.226 47.619 0.00 0.00 34.09 2.69
66 67 2.157738 CAAGGAGTTGGGAGCTTCAAG 58.842 52.381 0.00 0.00 0.00 3.02
67 68 0.695347 AGGAGTTGGGAGCTTCAAGG 59.305 55.000 0.00 0.00 0.00 3.61
68 69 0.402121 GGAGTTGGGAGCTTCAAGGT 59.598 55.000 0.00 0.00 0.00 3.50
69 70 1.528129 GAGTTGGGAGCTTCAAGGTG 58.472 55.000 0.00 0.00 0.00 4.00
70 71 0.111253 AGTTGGGAGCTTCAAGGTGG 59.889 55.000 0.00 0.00 0.00 4.61
71 72 0.895559 GTTGGGAGCTTCAAGGTGGG 60.896 60.000 0.00 0.00 0.00 4.61
72 73 1.360393 TTGGGAGCTTCAAGGTGGGT 61.360 55.000 0.00 0.00 0.00 4.51
73 74 1.303643 GGGAGCTTCAAGGTGGGTG 60.304 63.158 0.00 0.00 0.00 4.61
74 75 1.761174 GGAGCTTCAAGGTGGGTGA 59.239 57.895 0.00 0.00 0.00 4.02
75 76 0.322008 GGAGCTTCAAGGTGGGTGAG 60.322 60.000 0.00 0.00 0.00 3.51
76 77 0.687354 GAGCTTCAAGGTGGGTGAGA 59.313 55.000 0.00 0.00 0.00 3.27
77 78 0.689623 AGCTTCAAGGTGGGTGAGAG 59.310 55.000 0.00 0.00 0.00 3.20
78 79 0.322008 GCTTCAAGGTGGGTGAGAGG 60.322 60.000 0.00 0.00 0.00 3.69
79 80 0.326264 CTTCAAGGTGGGTGAGAGGG 59.674 60.000 0.00 0.00 0.00 4.30
80 81 0.401395 TTCAAGGTGGGTGAGAGGGT 60.401 55.000 0.00 0.00 0.00 4.34
81 82 0.401395 TCAAGGTGGGTGAGAGGGTT 60.401 55.000 0.00 0.00 0.00 4.11
82 83 0.250901 CAAGGTGGGTGAGAGGGTTG 60.251 60.000 0.00 0.00 0.00 3.77
83 84 1.427072 AAGGTGGGTGAGAGGGTTGG 61.427 60.000 0.00 0.00 0.00 3.77
84 85 2.034221 GTGGGTGAGAGGGTTGGC 59.966 66.667 0.00 0.00 0.00 4.52
85 86 3.636231 TGGGTGAGAGGGTTGGCG 61.636 66.667 0.00 0.00 0.00 5.69
86 87 4.410400 GGGTGAGAGGGTTGGCGG 62.410 72.222 0.00 0.00 0.00 6.13
101 102 3.411351 CGGCGGACGTTGTGGAAG 61.411 66.667 0.00 0.00 37.93 3.46
102 103 3.047877 GGCGGACGTTGTGGAAGG 61.048 66.667 0.00 0.00 0.00 3.46
103 104 3.047877 GCGGACGTTGTGGAAGGG 61.048 66.667 0.00 0.00 0.00 3.95
104 105 2.358247 CGGACGTTGTGGAAGGGG 60.358 66.667 0.00 0.00 0.00 4.79
105 106 2.874664 CGGACGTTGTGGAAGGGGA 61.875 63.158 0.00 0.00 0.00 4.81
106 107 1.003718 GGACGTTGTGGAAGGGGAG 60.004 63.158 0.00 0.00 0.00 4.30
107 108 1.671379 GACGTTGTGGAAGGGGAGC 60.671 63.158 0.00 0.00 0.00 4.70
108 109 2.113243 GACGTTGTGGAAGGGGAGCT 62.113 60.000 0.00 0.00 0.00 4.09
109 110 1.376037 CGTTGTGGAAGGGGAGCTC 60.376 63.158 4.71 4.71 0.00 4.09
110 111 1.761174 GTTGTGGAAGGGGAGCTCA 59.239 57.895 17.19 0.00 0.00 4.26
111 112 0.606673 GTTGTGGAAGGGGAGCTCAC 60.607 60.000 17.19 12.85 0.00 3.51
112 113 1.779061 TTGTGGAAGGGGAGCTCACC 61.779 60.000 28.72 28.72 40.63 4.02
119 120 2.665603 GGGAGCTCACCTCACCAC 59.334 66.667 17.19 0.00 42.62 4.16
120 121 2.262915 GGAGCTCACCTCACCACG 59.737 66.667 17.19 0.00 42.62 4.94
121 122 2.574955 GGAGCTCACCTCACCACGT 61.575 63.158 17.19 0.00 42.62 4.49
122 123 1.373497 GAGCTCACCTCACCACGTG 60.373 63.158 9.40 9.08 40.45 4.49
123 124 2.088674 GAGCTCACCTCACCACGTGT 62.089 60.000 15.65 0.00 40.45 4.49
124 125 1.956170 GCTCACCTCACCACGTGTG 60.956 63.158 15.65 12.72 46.88 3.82
141 142 4.208686 GGCGACGGCGAGGAAGAT 62.209 66.667 18.90 0.00 41.24 2.40
142 143 2.956964 GCGACGGCGAGGAAGATG 60.957 66.667 18.90 0.00 40.82 2.90
143 144 2.278857 CGACGGCGAGGAAGATGG 60.279 66.667 16.62 0.00 40.82 3.51
144 145 2.107141 GACGGCGAGGAAGATGGG 59.893 66.667 16.62 0.00 0.00 4.00
145 146 3.447025 GACGGCGAGGAAGATGGGG 62.447 68.421 16.62 0.00 0.00 4.96
146 147 3.154473 CGGCGAGGAAGATGGGGA 61.154 66.667 0.00 0.00 0.00 4.81
147 148 2.511452 CGGCGAGGAAGATGGGGAT 61.511 63.158 0.00 0.00 0.00 3.85
148 149 1.373059 GGCGAGGAAGATGGGGATC 59.627 63.158 0.00 0.00 0.00 3.36
149 150 1.373059 GCGAGGAAGATGGGGATCC 59.627 63.158 1.92 1.92 0.00 3.36
150 151 1.124477 GCGAGGAAGATGGGGATCCT 61.124 60.000 12.58 0.00 0.00 3.24
151 152 0.683973 CGAGGAAGATGGGGATCCTG 59.316 60.000 12.58 0.00 0.00 3.86
152 153 1.063183 GAGGAAGATGGGGATCCTGG 58.937 60.000 12.58 0.00 0.00 4.45
153 154 0.649992 AGGAAGATGGGGATCCTGGA 59.350 55.000 12.58 0.00 0.00 3.86
154 155 1.063183 GGAAGATGGGGATCCTGGAG 58.937 60.000 12.58 0.00 0.00 3.86
155 156 1.063183 GAAGATGGGGATCCTGGAGG 58.937 60.000 12.58 0.00 0.00 4.30
156 157 0.348370 AAGATGGGGATCCTGGAGGT 59.652 55.000 12.58 0.00 36.34 3.85
157 158 0.401105 AGATGGGGATCCTGGAGGTG 60.401 60.000 12.58 0.00 36.34 4.00
158 159 1.386485 ATGGGGATCCTGGAGGTGG 60.386 63.158 12.58 0.00 36.34 4.61
159 160 2.774351 GGGGATCCTGGAGGTGGG 60.774 72.222 12.58 0.00 36.34 4.61
160 161 3.493303 GGGATCCTGGAGGTGGGC 61.493 72.222 12.58 0.00 36.34 5.36
161 162 3.866582 GGATCCTGGAGGTGGGCG 61.867 72.222 3.84 0.00 36.34 6.13
162 163 2.764128 GATCCTGGAGGTGGGCGA 60.764 66.667 1.52 0.00 36.34 5.54
163 164 2.765807 ATCCTGGAGGTGGGCGAG 60.766 66.667 1.52 0.00 36.34 5.03
164 165 3.317436 ATCCTGGAGGTGGGCGAGA 62.317 63.158 1.52 0.00 36.34 4.04
165 166 3.465403 CCTGGAGGTGGGCGAGAG 61.465 72.222 0.00 0.00 0.00 3.20
166 167 3.465403 CTGGAGGTGGGCGAGAGG 61.465 72.222 0.00 0.00 0.00 3.69
186 187 2.280389 CGATGGCGGAGGATGTGG 60.280 66.667 0.00 0.00 0.00 4.17
187 188 2.796193 CGATGGCGGAGGATGTGGA 61.796 63.158 0.00 0.00 0.00 4.02
188 189 1.070445 GATGGCGGAGGATGTGGAG 59.930 63.158 0.00 0.00 0.00 3.86
189 190 2.388890 GATGGCGGAGGATGTGGAGG 62.389 65.000 0.00 0.00 0.00 4.30
190 191 3.083997 GGCGGAGGATGTGGAGGT 61.084 66.667 0.00 0.00 0.00 3.85
191 192 2.187946 GCGGAGGATGTGGAGGTG 59.812 66.667 0.00 0.00 0.00 4.00
192 193 2.903357 CGGAGGATGTGGAGGTGG 59.097 66.667 0.00 0.00 0.00 4.61
193 194 2.735772 CGGAGGATGTGGAGGTGGG 61.736 68.421 0.00 0.00 0.00 4.61
194 195 2.592308 GAGGATGTGGAGGTGGGC 59.408 66.667 0.00 0.00 0.00 5.36
195 196 3.391665 GAGGATGTGGAGGTGGGCG 62.392 68.421 0.00 0.00 0.00 6.13
196 197 4.489771 GGATGTGGAGGTGGGCGG 62.490 72.222 0.00 0.00 0.00 6.13
197 198 4.489771 GATGTGGAGGTGGGCGGG 62.490 72.222 0.00 0.00 0.00 6.13
235 236 4.373116 GCAGAAGCACGGACGGGA 62.373 66.667 0.00 0.00 41.58 5.14
236 237 2.579201 CAGAAGCACGGACGGGAT 59.421 61.111 0.00 0.00 0.00 3.85
237 238 1.811266 CAGAAGCACGGACGGGATG 60.811 63.158 0.00 0.00 0.00 3.51
238 239 2.264794 GAAGCACGGACGGGATGT 59.735 61.111 0.00 0.00 0.00 3.06
239 240 2.047274 AAGCACGGACGGGATGTG 60.047 61.111 0.00 0.00 36.70 3.21
242 243 2.815211 CACGGACGGGATGTGCAG 60.815 66.667 0.00 0.00 39.19 4.41
243 244 4.760047 ACGGACGGGATGTGCAGC 62.760 66.667 0.00 0.00 39.19 5.25
244 245 4.758251 CGGACGGGATGTGCAGCA 62.758 66.667 0.00 0.00 39.19 4.41
245 246 2.124570 GGACGGGATGTGCAGCAT 60.125 61.111 0.00 0.00 39.04 3.79
246 247 2.475466 GGACGGGATGTGCAGCATG 61.475 63.158 0.00 0.00 39.04 4.06
247 248 2.438975 ACGGGATGTGCAGCATGG 60.439 61.111 0.00 0.38 38.06 3.66
248 249 2.438975 CGGGATGTGCAGCATGGT 60.439 61.111 0.00 0.00 38.06 3.55
249 250 2.767445 CGGGATGTGCAGCATGGTG 61.767 63.158 20.52 20.52 38.06 4.17
250 251 1.378911 GGGATGTGCAGCATGGTGA 60.379 57.895 28.34 8.20 38.06 4.02
251 252 1.381928 GGGATGTGCAGCATGGTGAG 61.382 60.000 28.34 3.25 38.06 3.51
252 253 1.381928 GGATGTGCAGCATGGTGAGG 61.382 60.000 28.34 2.45 38.06 3.86
253 254 0.393402 GATGTGCAGCATGGTGAGGA 60.393 55.000 28.34 10.53 38.06 3.71
254 255 0.393944 ATGTGCAGCATGGTGAGGAG 60.394 55.000 28.34 1.64 36.26 3.69
255 256 2.045634 TGCAGCATGGTGAGGAGC 60.046 61.111 28.34 12.88 35.86 4.70
256 257 2.045634 GCAGCATGGTGAGGAGCA 60.046 61.111 28.34 0.00 35.86 4.26
257 258 2.404995 GCAGCATGGTGAGGAGCAC 61.405 63.158 28.34 4.90 46.98 4.40
293 294 4.776322 CGGTGCGGATGCCAAGGA 62.776 66.667 0.00 0.00 41.78 3.36
294 295 2.124151 GGTGCGGATGCCAAGGAT 60.124 61.111 0.00 0.00 41.78 3.24
295 296 1.148273 GGTGCGGATGCCAAGGATA 59.852 57.895 0.00 0.00 41.78 2.59
296 297 0.465460 GGTGCGGATGCCAAGGATAA 60.465 55.000 0.00 0.00 41.78 1.75
297 298 0.947244 GTGCGGATGCCAAGGATAAG 59.053 55.000 0.00 0.00 41.78 1.73
298 299 0.819259 TGCGGATGCCAAGGATAAGC 60.819 55.000 0.00 0.00 41.78 3.09
299 300 1.845809 GCGGATGCCAAGGATAAGCG 61.846 60.000 0.00 0.00 33.98 4.68
300 301 0.532862 CGGATGCCAAGGATAAGCGT 60.533 55.000 0.00 0.00 0.00 5.07
301 302 1.230324 GGATGCCAAGGATAAGCGTC 58.770 55.000 0.00 0.00 40.95 5.19
302 303 1.475034 GGATGCCAAGGATAAGCGTCA 60.475 52.381 5.86 0.00 42.97 4.35
303 304 1.869767 GATGCCAAGGATAAGCGTCAG 59.130 52.381 0.00 0.00 41.25 3.51
304 305 0.901827 TGCCAAGGATAAGCGTCAGA 59.098 50.000 0.00 0.00 0.00 3.27
305 306 1.291132 GCCAAGGATAAGCGTCAGAC 58.709 55.000 0.00 0.00 0.00 3.51
306 307 1.560923 CCAAGGATAAGCGTCAGACG 58.439 55.000 19.10 19.10 45.88 4.18
307 308 1.560923 CAAGGATAAGCGTCAGACGG 58.439 55.000 24.13 6.57 42.82 4.79
308 309 0.460311 AAGGATAAGCGTCAGACGGG 59.540 55.000 24.13 0.00 42.82 5.28
309 310 0.683504 AGGATAAGCGTCAGACGGGT 60.684 55.000 24.13 8.06 42.82 5.28
310 311 0.527817 GGATAAGCGTCAGACGGGTG 60.528 60.000 24.13 0.00 42.82 4.61
311 312 1.146358 GATAAGCGTCAGACGGGTGC 61.146 60.000 24.13 7.55 42.82 5.01
312 313 2.884087 ATAAGCGTCAGACGGGTGCG 62.884 60.000 24.13 0.00 42.82 5.34
315 316 4.657824 CGTCAGACGGGTGCGGTT 62.658 66.667 15.64 0.00 38.08 4.44
316 317 3.041940 GTCAGACGGGTGCGGTTG 61.042 66.667 0.00 0.00 0.00 3.77
317 318 4.308458 TCAGACGGGTGCGGTTGG 62.308 66.667 0.00 0.00 0.00 3.77
324 325 2.975799 GGTGCGGTTGGCTTCGAA 60.976 61.111 0.00 0.00 44.05 3.71
325 326 2.556287 GTGCGGTTGGCTTCGAAG 59.444 61.111 21.02 21.02 44.05 3.79
326 327 2.668212 TGCGGTTGGCTTCGAAGG 60.668 61.111 25.77 9.64 44.05 3.46
327 328 2.358247 GCGGTTGGCTTCGAAGGA 60.358 61.111 25.77 0.00 39.11 3.36
328 329 1.745489 GCGGTTGGCTTCGAAGGAT 60.745 57.895 25.77 0.00 39.11 3.24
329 330 1.982073 GCGGTTGGCTTCGAAGGATG 61.982 60.000 25.77 2.35 39.11 3.51
330 331 0.673644 CGGTTGGCTTCGAAGGATGT 60.674 55.000 25.77 0.00 0.00 3.06
331 332 1.404986 CGGTTGGCTTCGAAGGATGTA 60.405 52.381 25.77 0.00 0.00 2.29
332 333 2.280628 GGTTGGCTTCGAAGGATGTAG 58.719 52.381 25.77 0.02 0.00 2.74
333 334 2.093658 GGTTGGCTTCGAAGGATGTAGA 60.094 50.000 25.77 0.00 0.00 2.59
334 335 3.190874 GTTGGCTTCGAAGGATGTAGAG 58.809 50.000 25.77 0.00 0.00 2.43
335 336 1.757118 TGGCTTCGAAGGATGTAGAGG 59.243 52.381 25.77 0.00 0.00 3.69
336 337 2.032620 GGCTTCGAAGGATGTAGAGGA 58.967 52.381 25.77 0.00 0.00 3.71
337 338 2.035321 GGCTTCGAAGGATGTAGAGGAG 59.965 54.545 25.77 0.00 0.00 3.69
338 339 2.035321 GCTTCGAAGGATGTAGAGGAGG 59.965 54.545 25.77 0.00 0.00 4.30
339 340 2.366640 TCGAAGGATGTAGAGGAGGG 57.633 55.000 0.00 0.00 0.00 4.30
340 341 0.676736 CGAAGGATGTAGAGGAGGGC 59.323 60.000 0.00 0.00 0.00 5.19
341 342 0.676736 GAAGGATGTAGAGGAGGGCG 59.323 60.000 0.00 0.00 0.00 6.13
342 343 0.760945 AAGGATGTAGAGGAGGGCGG 60.761 60.000 0.00 0.00 0.00 6.13
343 344 2.737830 GATGTAGAGGAGGGCGGC 59.262 66.667 0.00 0.00 0.00 6.53
344 345 3.214250 GATGTAGAGGAGGGCGGCG 62.214 68.421 0.51 0.51 0.00 6.46
361 362 3.880846 GGCGGCGCTTGATGGAAG 61.881 66.667 32.30 0.00 34.41 3.46
362 363 3.880846 GCGGCGCTTGATGGAAGG 61.881 66.667 26.86 0.00 31.56 3.46
363 364 3.880846 CGGCGCTTGATGGAAGGC 61.881 66.667 7.64 0.00 31.56 4.35
364 365 3.880846 GGCGCTTGATGGAAGGCG 61.881 66.667 7.64 0.00 35.55 5.52
365 366 2.819595 GCGCTTGATGGAAGGCGA 60.820 61.111 10.30 0.00 34.86 5.54
366 367 2.398554 GCGCTTGATGGAAGGCGAA 61.399 57.895 10.30 0.00 34.86 4.70
367 368 1.425428 CGCTTGATGGAAGGCGAAC 59.575 57.895 0.00 0.00 34.86 3.95
368 369 1.298157 CGCTTGATGGAAGGCGAACA 61.298 55.000 0.00 0.00 34.86 3.18
369 370 0.449388 GCTTGATGGAAGGCGAACAG 59.551 55.000 0.00 0.00 31.56 3.16
370 371 1.945819 GCTTGATGGAAGGCGAACAGA 60.946 52.381 0.00 0.00 31.56 3.41
371 372 2.005451 CTTGATGGAAGGCGAACAGAG 58.995 52.381 0.00 0.00 0.00 3.35
372 373 1.266178 TGATGGAAGGCGAACAGAGA 58.734 50.000 0.00 0.00 0.00 3.10
373 374 1.833630 TGATGGAAGGCGAACAGAGAT 59.166 47.619 0.00 0.00 0.00 2.75
374 375 2.208431 GATGGAAGGCGAACAGAGATG 58.792 52.381 0.00 0.00 0.00 2.90
375 376 0.250234 TGGAAGGCGAACAGAGATGG 59.750 55.000 0.00 0.00 0.00 3.51
376 377 1.092345 GGAAGGCGAACAGAGATGGC 61.092 60.000 0.00 0.00 0.00 4.40
377 378 1.424493 GAAGGCGAACAGAGATGGCG 61.424 60.000 0.00 0.00 0.00 5.69
378 379 2.859273 AAGGCGAACAGAGATGGCGG 62.859 60.000 0.00 0.00 0.00 6.13
379 380 3.567797 GCGAACAGAGATGGCGGC 61.568 66.667 0.00 0.00 0.00 6.53
380 381 3.257561 CGAACAGAGATGGCGGCG 61.258 66.667 0.51 0.51 0.00 6.46
381 382 2.892425 GAACAGAGATGGCGGCGG 60.892 66.667 9.78 0.00 0.00 6.13
382 383 3.665675 GAACAGAGATGGCGGCGGT 62.666 63.158 9.78 0.00 0.00 5.68
383 384 3.958147 AACAGAGATGGCGGCGGTG 62.958 63.158 9.78 0.00 0.00 4.94
393 394 4.717629 CGGCGGTGCTTGACGAGA 62.718 66.667 0.00 0.00 0.00 4.04
394 395 2.125512 GGCGGTGCTTGACGAGAT 60.126 61.111 0.00 0.00 0.00 2.75
395 396 2.456119 GGCGGTGCTTGACGAGATG 61.456 63.158 0.00 0.00 0.00 2.90
396 397 3.084579 CGGTGCTTGACGAGATGC 58.915 61.111 0.00 0.00 0.00 3.91
397 398 1.446792 CGGTGCTTGACGAGATGCT 60.447 57.895 0.00 0.00 0.00 3.79
398 399 1.416813 CGGTGCTTGACGAGATGCTC 61.417 60.000 0.00 0.00 0.00 4.26
399 400 0.108424 GGTGCTTGACGAGATGCTCT 60.108 55.000 0.00 0.00 0.00 4.09
400 401 0.997932 GTGCTTGACGAGATGCTCTG 59.002 55.000 0.00 0.00 0.00 3.35
401 402 0.890683 TGCTTGACGAGATGCTCTGA 59.109 50.000 0.00 0.00 0.00 3.27
402 403 1.479730 TGCTTGACGAGATGCTCTGAT 59.520 47.619 0.00 0.00 0.00 2.90
403 404 2.126467 GCTTGACGAGATGCTCTGATC 58.874 52.381 0.00 0.00 0.00 2.92
404 405 2.383450 CTTGACGAGATGCTCTGATCG 58.617 52.381 0.00 0.00 40.86 3.69
405 406 1.668419 TGACGAGATGCTCTGATCGA 58.332 50.000 4.79 0.00 38.50 3.59
406 407 1.601430 TGACGAGATGCTCTGATCGAG 59.399 52.381 4.79 9.37 42.88 4.04
426 427 3.730761 GCGGCAGTGCTTGGTCTG 61.731 66.667 16.11 0.00 35.12 3.51
427 428 3.052082 CGGCAGTGCTTGGTCTGG 61.052 66.667 16.11 0.00 32.94 3.86
428 429 2.431683 GGCAGTGCTTGGTCTGGA 59.568 61.111 16.11 0.00 32.94 3.86
429 430 1.968540 GGCAGTGCTTGGTCTGGAC 60.969 63.158 16.11 0.00 32.94 4.02
430 431 2.320587 GCAGTGCTTGGTCTGGACG 61.321 63.158 8.18 0.00 32.94 4.79
431 432 2.031163 AGTGCTTGGTCTGGACGC 59.969 61.111 0.00 0.00 0.00 5.19
432 433 3.414700 GTGCTTGGTCTGGACGCG 61.415 66.667 3.53 3.53 0.00 6.01
433 434 3.611674 TGCTTGGTCTGGACGCGA 61.612 61.111 15.93 0.00 0.00 5.87
434 435 2.811317 GCTTGGTCTGGACGCGAG 60.811 66.667 15.93 0.00 0.00 5.03
435 436 2.962569 CTTGGTCTGGACGCGAGA 59.037 61.111 15.93 1.38 0.00 4.04
436 437 1.513158 CTTGGTCTGGACGCGAGAT 59.487 57.895 15.93 0.00 0.00 2.75
437 438 0.803768 CTTGGTCTGGACGCGAGATG 60.804 60.000 15.93 0.00 0.00 2.90
438 439 2.105128 GGTCTGGACGCGAGATGG 59.895 66.667 15.93 0.00 0.00 3.51
439 440 2.415608 GGTCTGGACGCGAGATGGA 61.416 63.158 15.93 0.85 0.00 3.41
440 441 1.511305 GTCTGGACGCGAGATGGAA 59.489 57.895 15.93 0.00 0.00 3.53
441 442 0.526524 GTCTGGACGCGAGATGGAAG 60.527 60.000 15.93 0.00 0.00 3.46
442 443 0.679960 TCTGGACGCGAGATGGAAGA 60.680 55.000 15.93 2.60 0.00 2.87
443 444 0.173481 CTGGACGCGAGATGGAAGAA 59.827 55.000 15.93 0.00 0.00 2.52
444 445 0.108804 TGGACGCGAGATGGAAGAAC 60.109 55.000 15.93 0.00 0.00 3.01
445 446 1.140407 GGACGCGAGATGGAAGAACG 61.140 60.000 15.93 0.00 0.00 3.95
446 447 1.140407 GACGCGAGATGGAAGAACGG 61.140 60.000 15.93 0.00 0.00 4.44
447 448 1.138883 CGCGAGATGGAAGAACGGA 59.861 57.895 0.00 0.00 0.00 4.69
448 449 0.867753 CGCGAGATGGAAGAACGGAG 60.868 60.000 0.00 0.00 0.00 4.63
449 450 0.456221 GCGAGATGGAAGAACGGAGA 59.544 55.000 0.00 0.00 0.00 3.71
450 451 1.067821 GCGAGATGGAAGAACGGAGAT 59.932 52.381 0.00 0.00 0.00 2.75
451 452 2.736978 CGAGATGGAAGAACGGAGATG 58.263 52.381 0.00 0.00 0.00 2.90
452 453 2.544694 CGAGATGGAAGAACGGAGATGG 60.545 54.545 0.00 0.00 0.00 3.51
453 454 1.765314 AGATGGAAGAACGGAGATGGG 59.235 52.381 0.00 0.00 0.00 4.00
454 455 0.839946 ATGGAAGAACGGAGATGGGG 59.160 55.000 0.00 0.00 0.00 4.96
455 456 0.252513 TGGAAGAACGGAGATGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
456 457 0.909623 GGAAGAACGGAGATGGGGAA 59.090 55.000 0.00 0.00 0.00 3.97
457 458 1.280998 GGAAGAACGGAGATGGGGAAA 59.719 52.381 0.00 0.00 0.00 3.13
458 459 2.290705 GGAAGAACGGAGATGGGGAAAA 60.291 50.000 0.00 0.00 0.00 2.29
459 460 2.789409 AGAACGGAGATGGGGAAAAG 57.211 50.000 0.00 0.00 0.00 2.27
460 461 1.095600 GAACGGAGATGGGGAAAAGC 58.904 55.000 0.00 0.00 0.00 3.51
461 462 0.323451 AACGGAGATGGGGAAAAGCC 60.323 55.000 0.00 0.00 0.00 4.35
462 463 1.302949 CGGAGATGGGGAAAAGCCA 59.697 57.895 0.00 0.00 38.95 4.75
463 464 0.323360 CGGAGATGGGGAAAAGCCAA 60.323 55.000 0.00 0.00 38.95 4.52
464 465 1.186200 GGAGATGGGGAAAAGCCAAC 58.814 55.000 0.00 0.00 38.95 3.77
465 466 0.811281 GAGATGGGGAAAAGCCAACG 59.189 55.000 0.00 0.00 38.95 4.10
466 467 0.404040 AGATGGGGAAAAGCCAACGA 59.596 50.000 0.00 0.00 38.95 3.85
467 468 0.526211 GATGGGGAAAAGCCAACGAC 59.474 55.000 0.00 0.00 38.95 4.34
468 469 0.112412 ATGGGGAAAAGCCAACGACT 59.888 50.000 0.00 0.00 38.95 4.18
469 470 0.821711 TGGGGAAAAGCCAACGACTG 60.822 55.000 0.00 0.00 38.95 3.51
470 471 0.536460 GGGGAAAAGCCAACGACTGA 60.536 55.000 0.00 0.00 38.95 3.41
471 472 0.875059 GGGAAAAGCCAACGACTGAG 59.125 55.000 0.00 0.00 38.95 3.35
472 473 0.238553 GGAAAAGCCAACGACTGAGC 59.761 55.000 0.00 0.00 36.34 4.26
473 474 0.238553 GAAAAGCCAACGACTGAGCC 59.761 55.000 0.00 0.00 0.00 4.70
474 475 0.179018 AAAAGCCAACGACTGAGCCT 60.179 50.000 0.00 0.00 0.00 4.58
475 476 0.886490 AAAGCCAACGACTGAGCCTG 60.886 55.000 0.00 0.00 0.00 4.85
476 477 3.426568 GCCAACGACTGAGCCTGC 61.427 66.667 0.00 0.00 0.00 4.85
477 478 2.031012 CCAACGACTGAGCCTGCA 59.969 61.111 0.00 0.00 0.00 4.41
478 479 2.320587 CCAACGACTGAGCCTGCAC 61.321 63.158 0.00 0.00 0.00 4.57
479 480 2.356313 AACGACTGAGCCTGCACG 60.356 61.111 0.00 0.00 0.00 5.34
482 483 4.724602 GACTGAGCCTGCACGCGA 62.725 66.667 15.93 0.00 0.00 5.87
483 484 4.731612 ACTGAGCCTGCACGCGAG 62.732 66.667 15.93 5.97 0.00 5.03
484 485 4.426112 CTGAGCCTGCACGCGAGA 62.426 66.667 15.93 0.00 0.00 4.04
485 486 3.921767 CTGAGCCTGCACGCGAGAA 62.922 63.158 15.93 0.00 0.00 2.87
486 487 2.738521 GAGCCTGCACGCGAGAAA 60.739 61.111 15.93 0.00 0.00 2.52
487 488 3.016474 GAGCCTGCACGCGAGAAAC 62.016 63.158 15.93 0.00 0.00 2.78
488 489 3.345808 GCCTGCACGCGAGAAACA 61.346 61.111 15.93 1.81 0.00 2.83
489 490 2.551270 CCTGCACGCGAGAAACAC 59.449 61.111 15.93 0.00 0.00 3.32
490 491 2.168621 CTGCACGCGAGAAACACG 59.831 61.111 15.93 0.00 0.00 4.49
491 492 2.278923 TGCACGCGAGAAACACGA 60.279 55.556 15.93 0.00 0.00 4.35
492 493 1.817217 CTGCACGCGAGAAACACGAA 61.817 55.000 15.93 0.00 0.00 3.85
493 494 1.274476 GCACGCGAGAAACACGAAA 59.726 52.632 15.93 0.00 0.00 3.46
494 495 0.315544 GCACGCGAGAAACACGAAAA 60.316 50.000 15.93 0.00 0.00 2.29
495 496 1.852861 GCACGCGAGAAACACGAAAAA 60.853 47.619 15.93 0.00 0.00 1.94
496 497 1.765750 CACGCGAGAAACACGAAAAAC 59.234 47.619 15.93 0.00 0.00 2.43
497 498 1.267682 ACGCGAGAAACACGAAAAACC 60.268 47.619 15.93 0.00 0.00 3.27
498 499 1.750351 GCGAGAAACACGAAAAACCC 58.250 50.000 0.00 0.00 0.00 4.11
499 500 1.918543 GCGAGAAACACGAAAAACCCG 60.919 52.381 0.00 0.00 0.00 5.28
500 501 1.750351 GAGAAACACGAAAAACCCGC 58.250 50.000 0.00 0.00 0.00 6.13
501 502 0.028374 AGAAACACGAAAAACCCGCG 59.972 50.000 0.00 0.00 0.00 6.46
502 503 0.248175 GAAACACGAAAAACCCGCGT 60.248 50.000 4.92 0.00 39.04 6.01
503 504 0.170784 AAACACGAAAAACCCGCGTT 59.829 45.000 4.92 0.00 35.90 4.84
504 505 0.170784 AACACGAAAAACCCGCGTTT 59.829 45.000 4.92 0.00 44.20 3.60
505 506 0.248175 ACACGAAAAACCCGCGTTTC 60.248 50.000 4.92 7.62 41.42 2.78
506 507 0.931202 CACGAAAAACCCGCGTTTCC 60.931 55.000 4.92 0.00 41.42 3.13
507 508 1.723197 CGAAAAACCCGCGTTTCCG 60.723 57.895 4.92 4.18 41.42 4.30
517 518 2.863153 CGTTTCCGCTCAGCCAAG 59.137 61.111 0.00 0.00 0.00 3.61
518 519 2.563427 GTTTCCGCTCAGCCAAGC 59.437 61.111 0.00 0.00 38.97 4.01
519 520 1.968540 GTTTCCGCTCAGCCAAGCT 60.969 57.895 6.39 0.00 40.23 3.74
539 540 2.724403 CGAAGCCGTTTTTGCATCC 58.276 52.632 0.00 0.00 0.00 3.51
540 541 1.065031 CGAAGCCGTTTTTGCATCCG 61.065 55.000 0.00 0.00 0.00 4.18
541 542 0.039527 GAAGCCGTTTTTGCATCCGT 60.040 50.000 0.00 0.00 0.00 4.69
542 543 0.039527 AAGCCGTTTTTGCATCCGTC 60.040 50.000 0.00 0.00 0.00 4.79
543 544 1.795962 GCCGTTTTTGCATCCGTCG 60.796 57.895 0.00 0.00 0.00 5.12
544 545 1.863491 CCGTTTTTGCATCCGTCGA 59.137 52.632 0.00 0.00 0.00 4.20
545 546 0.179225 CCGTTTTTGCATCCGTCGAG 60.179 55.000 0.00 0.00 0.00 4.04
546 547 0.789383 CGTTTTTGCATCCGTCGAGC 60.789 55.000 0.00 0.00 0.00 5.03
547 548 0.454452 GTTTTTGCATCCGTCGAGCC 60.454 55.000 0.00 0.00 0.00 4.70
548 549 0.886938 TTTTTGCATCCGTCGAGCCA 60.887 50.000 0.00 0.00 0.00 4.75
549 550 1.298157 TTTTGCATCCGTCGAGCCAG 61.298 55.000 0.00 0.00 0.00 4.85
550 551 2.449031 TTTGCATCCGTCGAGCCAGT 62.449 55.000 0.00 0.00 0.00 4.00
551 552 2.583593 GCATCCGTCGAGCCAGTC 60.584 66.667 0.00 0.00 0.00 3.51
552 553 2.105128 CATCCGTCGAGCCAGTCC 59.895 66.667 0.00 0.00 0.00 3.85
553 554 3.148279 ATCCGTCGAGCCAGTCCC 61.148 66.667 0.00 0.00 0.00 4.46
554 555 3.957435 ATCCGTCGAGCCAGTCCCA 62.957 63.158 0.00 0.00 0.00 4.37
555 556 4.135153 CCGTCGAGCCAGTCCCAG 62.135 72.222 0.00 0.00 0.00 4.45
556 557 3.374402 CGTCGAGCCAGTCCCAGT 61.374 66.667 0.00 0.00 0.00 4.00
557 558 2.932234 CGTCGAGCCAGTCCCAGTT 61.932 63.158 0.00 0.00 0.00 3.16
558 559 1.592400 CGTCGAGCCAGTCCCAGTTA 61.592 60.000 0.00 0.00 0.00 2.24
576 577 0.181824 TAAACGGGCCAATAGCTCCC 59.818 55.000 4.39 0.00 39.69 4.30
1047 1048 3.069443 GTGTGAGGGAAGAAAATGGCAAA 59.931 43.478 0.00 0.00 0.00 3.68
1101 1102 4.489771 CAGCCGGGGCAGGTTAGG 62.490 72.222 12.97 0.00 44.88 2.69
1621 1622 6.604795 AGGGATCATTTGTTAGATGAACTTGG 59.395 38.462 0.00 0.00 38.98 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.907897 ATACTTCTCCGTGCTGGCGC 62.908 60.000 0.00 0.00 37.80 6.53
13 14 1.141881 ATACTTCTCCGTGCTGGCG 59.858 57.895 0.00 0.00 37.80 5.69
14 15 0.811616 CCATACTTCTCCGTGCTGGC 60.812 60.000 0.00 0.00 37.80 4.85
15 16 0.179073 CCCATACTTCTCCGTGCTGG 60.179 60.000 0.00 0.00 40.09 4.85
16 17 0.179073 CCCCATACTTCTCCGTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
17 18 0.325296 TCCCCATACTTCTCCGTGCT 60.325 55.000 0.00 0.00 0.00 4.40
18 19 0.539986 TTCCCCATACTTCTCCGTGC 59.460 55.000 0.00 0.00 0.00 5.34
19 20 1.831736 ACTTCCCCATACTTCTCCGTG 59.168 52.381 0.00 0.00 0.00 4.94
20 21 2.236395 CAACTTCCCCATACTTCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
21 22 2.420129 CCAACTTCCCCATACTTCTCCG 60.420 54.545 0.00 0.00 0.00 4.63
22 23 2.684038 GCCAACTTCCCCATACTTCTCC 60.684 54.545 0.00 0.00 0.00 3.71
23 24 2.644676 GCCAACTTCCCCATACTTCTC 58.355 52.381 0.00 0.00 0.00 2.87
24 25 1.065418 CGCCAACTTCCCCATACTTCT 60.065 52.381 0.00 0.00 0.00 2.85
25 26 1.339727 ACGCCAACTTCCCCATACTTC 60.340 52.381 0.00 0.00 0.00 3.01
26 27 0.696501 ACGCCAACTTCCCCATACTT 59.303 50.000 0.00 0.00 0.00 2.24
27 28 0.252197 GACGCCAACTTCCCCATACT 59.748 55.000 0.00 0.00 0.00 2.12
28 29 0.035820 TGACGCCAACTTCCCCATAC 60.036 55.000 0.00 0.00 0.00 2.39
29 30 0.693622 TTGACGCCAACTTCCCCATA 59.306 50.000 0.00 0.00 0.00 2.74
30 31 0.609131 CTTGACGCCAACTTCCCCAT 60.609 55.000 0.00 0.00 0.00 4.00
31 32 1.228124 CTTGACGCCAACTTCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
32 33 1.971695 CCTTGACGCCAACTTCCCC 60.972 63.158 0.00 0.00 0.00 4.81
33 34 0.955919 CTCCTTGACGCCAACTTCCC 60.956 60.000 0.00 0.00 0.00 3.97
34 35 0.250338 ACTCCTTGACGCCAACTTCC 60.250 55.000 0.00 0.00 0.00 3.46
35 36 1.264288 CAACTCCTTGACGCCAACTTC 59.736 52.381 0.00 0.00 0.00 3.01
36 37 1.308998 CAACTCCTTGACGCCAACTT 58.691 50.000 0.00 0.00 0.00 2.66
37 38 0.535102 CCAACTCCTTGACGCCAACT 60.535 55.000 0.00 0.00 0.00 3.16
38 39 1.515521 CCCAACTCCTTGACGCCAAC 61.516 60.000 0.00 0.00 0.00 3.77
39 40 1.228124 CCCAACTCCTTGACGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
40 41 2.111999 CTCCCAACTCCTTGACGCCA 62.112 60.000 0.00 0.00 0.00 5.69
41 42 1.376037 CTCCCAACTCCTTGACGCC 60.376 63.158 0.00 0.00 0.00 5.68
42 43 2.035442 GCTCCCAACTCCTTGACGC 61.035 63.158 0.00 0.00 0.00 5.19
43 44 0.035458 AAGCTCCCAACTCCTTGACG 59.965 55.000 0.00 0.00 0.00 4.35
44 45 1.072331 TGAAGCTCCCAACTCCTTGAC 59.928 52.381 0.00 0.00 0.00 3.18
45 46 1.434188 TGAAGCTCCCAACTCCTTGA 58.566 50.000 0.00 0.00 0.00 3.02
46 47 2.157738 CTTGAAGCTCCCAACTCCTTG 58.842 52.381 0.00 0.00 0.00 3.61
47 48 1.074566 CCTTGAAGCTCCCAACTCCTT 59.925 52.381 0.00 0.00 0.00 3.36
48 49 0.695347 CCTTGAAGCTCCCAACTCCT 59.305 55.000 0.00 0.00 0.00 3.69
49 50 0.402121 ACCTTGAAGCTCCCAACTCC 59.598 55.000 0.00 0.00 0.00 3.85
50 51 1.528129 CACCTTGAAGCTCCCAACTC 58.472 55.000 0.00 0.00 0.00 3.01
51 52 0.111253 CCACCTTGAAGCTCCCAACT 59.889 55.000 0.00 0.00 0.00 3.16
52 53 0.895559 CCCACCTTGAAGCTCCCAAC 60.896 60.000 0.00 0.00 0.00 3.77
53 54 1.360393 ACCCACCTTGAAGCTCCCAA 61.360 55.000 0.00 0.00 0.00 4.12
54 55 1.774217 ACCCACCTTGAAGCTCCCA 60.774 57.895 0.00 0.00 0.00 4.37
55 56 1.303643 CACCCACCTTGAAGCTCCC 60.304 63.158 0.00 0.00 0.00 4.30
56 57 0.322008 CTCACCCACCTTGAAGCTCC 60.322 60.000 0.00 0.00 0.00 4.70
57 58 0.687354 TCTCACCCACCTTGAAGCTC 59.313 55.000 0.00 0.00 0.00 4.09
58 59 0.689623 CTCTCACCCACCTTGAAGCT 59.310 55.000 0.00 0.00 0.00 3.74
59 60 0.322008 CCTCTCACCCACCTTGAAGC 60.322 60.000 0.00 0.00 0.00 3.86
60 61 0.326264 CCCTCTCACCCACCTTGAAG 59.674 60.000 0.00 0.00 0.00 3.02
61 62 0.401395 ACCCTCTCACCCACCTTGAA 60.401 55.000 0.00 0.00 0.00 2.69
62 63 0.401395 AACCCTCTCACCCACCTTGA 60.401 55.000 0.00 0.00 0.00 3.02
63 64 0.250901 CAACCCTCTCACCCACCTTG 60.251 60.000 0.00 0.00 0.00 3.61
64 65 1.427072 CCAACCCTCTCACCCACCTT 61.427 60.000 0.00 0.00 0.00 3.50
65 66 1.847968 CCAACCCTCTCACCCACCT 60.848 63.158 0.00 0.00 0.00 4.00
66 67 2.757077 CCAACCCTCTCACCCACC 59.243 66.667 0.00 0.00 0.00 4.61
67 68 2.034221 GCCAACCCTCTCACCCAC 59.966 66.667 0.00 0.00 0.00 4.61
68 69 3.636231 CGCCAACCCTCTCACCCA 61.636 66.667 0.00 0.00 0.00 4.51
69 70 4.410400 CCGCCAACCCTCTCACCC 62.410 72.222 0.00 0.00 0.00 4.61
84 85 3.411351 CTTCCACAACGTCCGCCG 61.411 66.667 0.00 0.00 44.03 6.46
85 86 3.047877 CCTTCCACAACGTCCGCC 61.048 66.667 0.00 0.00 0.00 6.13
86 87 3.047877 CCCTTCCACAACGTCCGC 61.048 66.667 0.00 0.00 0.00 5.54
87 88 2.358247 CCCCTTCCACAACGTCCG 60.358 66.667 0.00 0.00 0.00 4.79
88 89 1.003718 CTCCCCTTCCACAACGTCC 60.004 63.158 0.00 0.00 0.00 4.79
89 90 1.671379 GCTCCCCTTCCACAACGTC 60.671 63.158 0.00 0.00 0.00 4.34
90 91 2.113243 GAGCTCCCCTTCCACAACGT 62.113 60.000 0.87 0.00 0.00 3.99
91 92 1.376037 GAGCTCCCCTTCCACAACG 60.376 63.158 0.87 0.00 0.00 4.10
92 93 0.606673 GTGAGCTCCCCTTCCACAAC 60.607 60.000 12.15 0.00 0.00 3.32
93 94 1.761174 GTGAGCTCCCCTTCCACAA 59.239 57.895 12.15 0.00 0.00 3.33
94 95 2.224159 GGTGAGCTCCCCTTCCACA 61.224 63.158 12.15 0.00 0.00 4.17
95 96 1.904990 GAGGTGAGCTCCCCTTCCAC 61.905 65.000 19.55 5.03 0.00 4.02
96 97 1.613630 GAGGTGAGCTCCCCTTCCA 60.614 63.158 19.55 0.00 0.00 3.53
97 98 1.613630 TGAGGTGAGCTCCCCTTCC 60.614 63.158 19.55 8.05 0.00 3.46
98 99 1.599576 GTGAGGTGAGCTCCCCTTC 59.400 63.158 19.55 12.47 0.00 3.46
99 100 1.920835 GGTGAGGTGAGCTCCCCTT 60.921 63.158 19.55 3.02 0.00 3.95
100 101 2.284995 GGTGAGGTGAGCTCCCCT 60.285 66.667 18.62 18.62 0.00 4.79
101 102 2.607750 TGGTGAGGTGAGCTCCCC 60.608 66.667 12.15 9.67 0.00 4.81
102 103 2.665603 GTGGTGAGGTGAGCTCCC 59.334 66.667 12.15 12.08 0.00 4.30
103 104 2.262915 CGTGGTGAGGTGAGCTCC 59.737 66.667 12.15 2.19 0.00 4.70
104 105 1.373497 CACGTGGTGAGGTGAGCTC 60.373 63.158 7.95 6.82 39.85 4.09
105 106 2.134287 ACACGTGGTGAGGTGAGCT 61.134 57.895 21.57 0.00 39.85 4.09
106 107 2.421739 ACACGTGGTGAGGTGAGC 59.578 61.111 21.57 0.00 39.85 4.26
124 125 4.208686 ATCTTCCTCGCCGTCGCC 62.209 66.667 0.00 0.00 35.26 5.54
125 126 2.956964 CATCTTCCTCGCCGTCGC 60.957 66.667 0.00 0.00 35.26 5.19
126 127 2.278857 CCATCTTCCTCGCCGTCG 60.279 66.667 0.00 0.00 0.00 5.12
127 128 2.107141 CCCATCTTCCTCGCCGTC 59.893 66.667 0.00 0.00 0.00 4.79
128 129 3.470888 CCCCATCTTCCTCGCCGT 61.471 66.667 0.00 0.00 0.00 5.68
129 130 2.441822 GATCCCCATCTTCCTCGCCG 62.442 65.000 0.00 0.00 0.00 6.46
130 131 1.373059 GATCCCCATCTTCCTCGCC 59.627 63.158 0.00 0.00 0.00 5.54
131 132 1.124477 AGGATCCCCATCTTCCTCGC 61.124 60.000 8.55 0.00 34.80 5.03
132 133 0.683973 CAGGATCCCCATCTTCCTCG 59.316 60.000 8.55 0.00 37.80 4.63
133 134 1.063183 CCAGGATCCCCATCTTCCTC 58.937 60.000 8.55 0.00 37.80 3.71
134 135 0.649992 TCCAGGATCCCCATCTTCCT 59.350 55.000 8.55 0.00 40.55 3.36
135 136 1.063183 CTCCAGGATCCCCATCTTCC 58.937 60.000 8.55 0.00 33.88 3.46
136 137 1.063183 CCTCCAGGATCCCCATCTTC 58.937 60.000 8.55 0.00 37.39 2.87
137 138 0.348370 ACCTCCAGGATCCCCATCTT 59.652 55.000 8.55 0.00 38.94 2.40
138 139 0.401105 CACCTCCAGGATCCCCATCT 60.401 60.000 8.55 0.00 38.94 2.90
139 140 1.422161 CCACCTCCAGGATCCCCATC 61.422 65.000 8.55 0.00 38.94 3.51
140 141 1.386485 CCACCTCCAGGATCCCCAT 60.386 63.158 8.55 0.00 38.94 4.00
141 142 2.042762 CCACCTCCAGGATCCCCA 59.957 66.667 8.55 0.00 38.94 4.96
142 143 2.774351 CCCACCTCCAGGATCCCC 60.774 72.222 8.55 0.00 38.94 4.81
143 144 3.493303 GCCCACCTCCAGGATCCC 61.493 72.222 8.55 0.00 38.94 3.85
144 145 3.866582 CGCCCACCTCCAGGATCC 61.867 72.222 2.48 2.48 38.94 3.36
145 146 2.764128 TCGCCCACCTCCAGGATC 60.764 66.667 0.00 0.00 38.94 3.36
146 147 2.765807 CTCGCCCACCTCCAGGAT 60.766 66.667 0.00 0.00 38.94 3.24
147 148 3.965026 CTCTCGCCCACCTCCAGGA 62.965 68.421 0.00 0.00 38.94 3.86
148 149 3.465403 CTCTCGCCCACCTCCAGG 61.465 72.222 0.00 0.00 42.17 4.45
149 150 3.465403 CCTCTCGCCCACCTCCAG 61.465 72.222 0.00 0.00 0.00 3.86
169 170 2.280389 CCACATCCTCCGCCATCG 60.280 66.667 0.00 0.00 0.00 3.84
170 171 1.070445 CTCCACATCCTCCGCCATC 59.930 63.158 0.00 0.00 0.00 3.51
171 172 2.446848 CCTCCACATCCTCCGCCAT 61.447 63.158 0.00 0.00 0.00 4.40
172 173 3.083349 CCTCCACATCCTCCGCCA 61.083 66.667 0.00 0.00 0.00 5.69
173 174 3.083997 ACCTCCACATCCTCCGCC 61.084 66.667 0.00 0.00 0.00 6.13
174 175 2.187946 CACCTCCACATCCTCCGC 59.812 66.667 0.00 0.00 0.00 5.54
175 176 2.735772 CCCACCTCCACATCCTCCG 61.736 68.421 0.00 0.00 0.00 4.63
176 177 3.049080 GCCCACCTCCACATCCTCC 62.049 68.421 0.00 0.00 0.00 4.30
177 178 2.592308 GCCCACCTCCACATCCTC 59.408 66.667 0.00 0.00 0.00 3.71
178 179 3.402681 CGCCCACCTCCACATCCT 61.403 66.667 0.00 0.00 0.00 3.24
179 180 4.489771 CCGCCCACCTCCACATCC 62.490 72.222 0.00 0.00 0.00 3.51
180 181 4.489771 CCCGCCCACCTCCACATC 62.490 72.222 0.00 0.00 0.00 3.06
218 219 3.665675 ATCCCGTCCGTGCTTCTGC 62.666 63.158 0.00 0.00 40.20 4.26
219 220 1.811266 CATCCCGTCCGTGCTTCTG 60.811 63.158 0.00 0.00 0.00 3.02
220 221 2.283529 ACATCCCGTCCGTGCTTCT 61.284 57.895 0.00 0.00 0.00 2.85
221 222 2.100631 CACATCCCGTCCGTGCTTC 61.101 63.158 0.00 0.00 0.00 3.86
222 223 2.047274 CACATCCCGTCCGTGCTT 60.047 61.111 0.00 0.00 0.00 3.91
225 226 2.815211 CTGCACATCCCGTCCGTG 60.815 66.667 0.00 0.00 0.00 4.94
226 227 4.760047 GCTGCACATCCCGTCCGT 62.760 66.667 0.00 0.00 0.00 4.69
227 228 4.758251 TGCTGCACATCCCGTCCG 62.758 66.667 0.00 0.00 0.00 4.79
228 229 2.124570 ATGCTGCACATCCCGTCC 60.125 61.111 3.57 0.00 31.52 4.79
229 230 2.475466 CCATGCTGCACATCCCGTC 61.475 63.158 3.57 0.00 36.64 4.79
230 231 2.438975 CCATGCTGCACATCCCGT 60.439 61.111 3.57 0.00 36.64 5.28
231 232 2.438975 ACCATGCTGCACATCCCG 60.439 61.111 3.57 0.00 36.64 5.14
232 233 1.378911 TCACCATGCTGCACATCCC 60.379 57.895 3.57 0.00 36.64 3.85
233 234 1.381928 CCTCACCATGCTGCACATCC 61.382 60.000 3.57 0.00 36.64 3.51
234 235 0.393402 TCCTCACCATGCTGCACATC 60.393 55.000 3.57 0.00 36.64 3.06
235 236 0.393944 CTCCTCACCATGCTGCACAT 60.394 55.000 3.57 0.00 40.66 3.21
236 237 1.002990 CTCCTCACCATGCTGCACA 60.003 57.895 3.57 0.00 0.00 4.57
237 238 2.404995 GCTCCTCACCATGCTGCAC 61.405 63.158 3.57 0.00 0.00 4.57
238 239 2.045634 GCTCCTCACCATGCTGCA 60.046 61.111 4.13 4.13 0.00 4.41
239 240 2.045634 TGCTCCTCACCATGCTGC 60.046 61.111 0.00 0.00 0.00 5.25
240 241 2.104859 CGTGCTCCTCACCATGCTG 61.105 63.158 0.00 0.00 42.69 4.41
241 242 2.267006 CGTGCTCCTCACCATGCT 59.733 61.111 0.00 0.00 42.69 3.79
242 243 3.503363 GCGTGCTCCTCACCATGC 61.503 66.667 0.00 0.00 42.69 4.06
243 244 2.821366 GGCGTGCTCCTCACCATG 60.821 66.667 0.00 0.00 42.69 3.66
244 245 4.101448 GGGCGTGCTCCTCACCAT 62.101 66.667 0.00 0.00 42.69 3.55
276 277 2.658679 TATCCTTGGCATCCGCACCG 62.659 60.000 0.00 0.00 41.24 4.94
277 278 0.465460 TTATCCTTGGCATCCGCACC 60.465 55.000 0.00 0.00 41.24 5.01
278 279 0.947244 CTTATCCTTGGCATCCGCAC 59.053 55.000 0.00 0.00 41.24 5.34
279 280 0.819259 GCTTATCCTTGGCATCCGCA 60.819 55.000 0.00 0.00 41.24 5.69
280 281 1.845809 CGCTTATCCTTGGCATCCGC 61.846 60.000 0.00 0.00 37.44 5.54
281 282 0.532862 ACGCTTATCCTTGGCATCCG 60.533 55.000 0.00 0.00 0.00 4.18
282 283 1.230324 GACGCTTATCCTTGGCATCC 58.770 55.000 0.00 0.00 0.00 3.51
283 284 1.869767 CTGACGCTTATCCTTGGCATC 59.130 52.381 0.00 0.00 0.00 3.91
284 285 1.486310 TCTGACGCTTATCCTTGGCAT 59.514 47.619 0.00 0.00 0.00 4.40
285 286 0.901827 TCTGACGCTTATCCTTGGCA 59.098 50.000 0.00 0.00 0.00 4.92
286 287 1.291132 GTCTGACGCTTATCCTTGGC 58.709 55.000 0.00 0.00 0.00 4.52
287 288 1.560923 CGTCTGACGCTTATCCTTGG 58.439 55.000 17.94 0.00 33.65 3.61
288 289 1.560923 CCGTCTGACGCTTATCCTTG 58.439 55.000 23.87 3.94 40.91 3.61
289 290 0.460311 CCCGTCTGACGCTTATCCTT 59.540 55.000 23.87 0.00 40.91 3.36
290 291 0.683504 ACCCGTCTGACGCTTATCCT 60.684 55.000 23.87 0.00 40.91 3.24
291 292 0.527817 CACCCGTCTGACGCTTATCC 60.528 60.000 23.87 0.00 40.91 2.59
292 293 1.146358 GCACCCGTCTGACGCTTATC 61.146 60.000 23.87 8.07 40.91 1.75
293 294 1.153628 GCACCCGTCTGACGCTTAT 60.154 57.895 23.87 6.32 40.91 1.73
294 295 2.260434 GCACCCGTCTGACGCTTA 59.740 61.111 23.87 0.00 40.91 3.09
298 299 4.657824 AACCGCACCCGTCTGACG 62.658 66.667 22.49 22.49 42.11 4.35
299 300 3.041940 CAACCGCACCCGTCTGAC 61.042 66.667 0.00 0.00 0.00 3.51
300 301 4.308458 CCAACCGCACCCGTCTGA 62.308 66.667 0.00 0.00 0.00 3.27
307 308 2.966309 CTTCGAAGCCAACCGCACC 61.966 63.158 13.09 0.00 41.38 5.01
308 309 2.556287 CTTCGAAGCCAACCGCAC 59.444 61.111 13.09 0.00 41.38 5.34
309 310 2.463589 ATCCTTCGAAGCCAACCGCA 62.464 55.000 19.99 0.00 41.38 5.69
310 311 1.745489 ATCCTTCGAAGCCAACCGC 60.745 57.895 19.99 0.00 37.98 5.68
311 312 0.673644 ACATCCTTCGAAGCCAACCG 60.674 55.000 19.99 5.11 0.00 4.44
312 313 2.093658 TCTACATCCTTCGAAGCCAACC 60.094 50.000 19.99 0.00 0.00 3.77
313 314 3.190874 CTCTACATCCTTCGAAGCCAAC 58.809 50.000 19.99 0.00 0.00 3.77
314 315 2.168521 CCTCTACATCCTTCGAAGCCAA 59.831 50.000 19.99 7.56 0.00 4.52
315 316 1.757118 CCTCTACATCCTTCGAAGCCA 59.243 52.381 19.99 8.53 0.00 4.75
316 317 2.032620 TCCTCTACATCCTTCGAAGCC 58.967 52.381 19.99 0.00 0.00 4.35
317 318 2.035321 CCTCCTCTACATCCTTCGAAGC 59.965 54.545 19.99 0.00 0.00 3.86
318 319 2.625790 CCCTCCTCTACATCCTTCGAAG 59.374 54.545 18.51 18.51 0.00 3.79
319 320 2.667470 CCCTCCTCTACATCCTTCGAA 58.333 52.381 0.00 0.00 0.00 3.71
320 321 1.754555 GCCCTCCTCTACATCCTTCGA 60.755 57.143 0.00 0.00 0.00 3.71
321 322 0.676736 GCCCTCCTCTACATCCTTCG 59.323 60.000 0.00 0.00 0.00 3.79
322 323 0.676736 CGCCCTCCTCTACATCCTTC 59.323 60.000 0.00 0.00 0.00 3.46
323 324 0.760945 CCGCCCTCCTCTACATCCTT 60.761 60.000 0.00 0.00 0.00 3.36
324 325 1.152440 CCGCCCTCCTCTACATCCT 60.152 63.158 0.00 0.00 0.00 3.24
325 326 2.873525 GCCGCCCTCCTCTACATCC 61.874 68.421 0.00 0.00 0.00 3.51
326 327 2.737830 GCCGCCCTCCTCTACATC 59.262 66.667 0.00 0.00 0.00 3.06
327 328 3.227276 CGCCGCCCTCCTCTACAT 61.227 66.667 0.00 0.00 0.00 2.29
344 345 3.880846 CTTCCATCAAGCGCCGCC 61.881 66.667 4.98 0.00 0.00 6.13
345 346 3.880846 CCTTCCATCAAGCGCCGC 61.881 66.667 2.29 0.00 0.00 6.53
346 347 3.880846 GCCTTCCATCAAGCGCCG 61.881 66.667 2.29 0.00 0.00 6.46
347 348 3.880846 CGCCTTCCATCAAGCGCC 61.881 66.667 2.29 0.00 0.00 6.53
348 349 2.398554 TTCGCCTTCCATCAAGCGC 61.399 57.895 0.00 0.00 33.94 5.92
349 350 1.298157 TGTTCGCCTTCCATCAAGCG 61.298 55.000 0.00 0.00 34.71 4.68
350 351 0.449388 CTGTTCGCCTTCCATCAAGC 59.551 55.000 0.00 0.00 0.00 4.01
351 352 2.005451 CTCTGTTCGCCTTCCATCAAG 58.995 52.381 0.00 0.00 0.00 3.02
352 353 1.623311 TCTCTGTTCGCCTTCCATCAA 59.377 47.619 0.00 0.00 0.00 2.57
353 354 1.266178 TCTCTGTTCGCCTTCCATCA 58.734 50.000 0.00 0.00 0.00 3.07
354 355 2.208431 CATCTCTGTTCGCCTTCCATC 58.792 52.381 0.00 0.00 0.00 3.51
355 356 1.134280 CCATCTCTGTTCGCCTTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
356 357 0.250234 CCATCTCTGTTCGCCTTCCA 59.750 55.000 0.00 0.00 0.00 3.53
357 358 1.092345 GCCATCTCTGTTCGCCTTCC 61.092 60.000 0.00 0.00 0.00 3.46
358 359 1.424493 CGCCATCTCTGTTCGCCTTC 61.424 60.000 0.00 0.00 0.00 3.46
359 360 1.448540 CGCCATCTCTGTTCGCCTT 60.449 57.895 0.00 0.00 0.00 4.35
360 361 2.185350 CGCCATCTCTGTTCGCCT 59.815 61.111 0.00 0.00 0.00 5.52
361 362 2.892425 CCGCCATCTCTGTTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
362 363 3.567797 GCCGCCATCTCTGTTCGC 61.568 66.667 0.00 0.00 0.00 4.70
363 364 3.257561 CGCCGCCATCTCTGTTCG 61.258 66.667 0.00 0.00 0.00 3.95
364 365 2.892425 CCGCCGCCATCTCTGTTC 60.892 66.667 0.00 0.00 0.00 3.18
365 366 3.706373 ACCGCCGCCATCTCTGTT 61.706 61.111 0.00 0.00 0.00 3.16
366 367 4.457496 CACCGCCGCCATCTCTGT 62.457 66.667 0.00 0.00 0.00 3.41
376 377 3.989698 ATCTCGTCAAGCACCGCCG 62.990 63.158 0.00 0.00 0.00 6.46
377 378 2.125512 ATCTCGTCAAGCACCGCC 60.126 61.111 0.00 0.00 0.00 6.13
378 379 3.084579 CATCTCGTCAAGCACCGC 58.915 61.111 0.00 0.00 0.00 5.68
379 380 1.416813 GAGCATCTCGTCAAGCACCG 61.417 60.000 0.00 0.00 0.00 4.94
380 381 2.378028 GAGCATCTCGTCAAGCACC 58.622 57.895 0.00 0.00 0.00 5.01
409 410 3.730761 CAGACCAAGCACTGCCGC 61.731 66.667 0.00 0.00 0.00 6.53
410 411 3.052082 CCAGACCAAGCACTGCCG 61.052 66.667 0.00 0.00 33.40 5.69
411 412 1.968540 GTCCAGACCAAGCACTGCC 60.969 63.158 0.00 0.00 33.40 4.85
412 413 2.320587 CGTCCAGACCAAGCACTGC 61.321 63.158 0.00 0.00 33.40 4.40
413 414 2.320587 GCGTCCAGACCAAGCACTG 61.321 63.158 0.00 0.00 0.00 3.66
414 415 2.031163 GCGTCCAGACCAAGCACT 59.969 61.111 0.00 0.00 0.00 4.40
415 416 3.414700 CGCGTCCAGACCAAGCAC 61.415 66.667 0.00 0.00 0.00 4.40
416 417 3.573772 CTCGCGTCCAGACCAAGCA 62.574 63.158 5.77 0.00 0.00 3.91
417 418 2.564553 ATCTCGCGTCCAGACCAAGC 62.565 60.000 5.77 0.00 0.00 4.01
418 419 0.803768 CATCTCGCGTCCAGACCAAG 60.804 60.000 5.77 0.00 0.00 3.61
419 420 1.215382 CATCTCGCGTCCAGACCAA 59.785 57.895 5.77 0.00 0.00 3.67
420 421 2.710902 CCATCTCGCGTCCAGACCA 61.711 63.158 5.77 0.00 0.00 4.02
421 422 1.945354 TTCCATCTCGCGTCCAGACC 61.945 60.000 5.77 0.00 0.00 3.85
422 423 0.526524 CTTCCATCTCGCGTCCAGAC 60.527 60.000 5.77 0.00 0.00 3.51
423 424 0.679960 TCTTCCATCTCGCGTCCAGA 60.680 55.000 5.77 1.33 0.00 3.86
424 425 0.173481 TTCTTCCATCTCGCGTCCAG 59.827 55.000 5.77 0.00 0.00 3.86
425 426 0.108804 GTTCTTCCATCTCGCGTCCA 60.109 55.000 5.77 0.00 0.00 4.02
426 427 1.140407 CGTTCTTCCATCTCGCGTCC 61.140 60.000 5.77 0.00 0.00 4.79
427 428 1.140407 CCGTTCTTCCATCTCGCGTC 61.140 60.000 5.77 0.00 0.00 5.19
428 429 1.153823 CCGTTCTTCCATCTCGCGT 60.154 57.895 5.77 0.00 0.00 6.01
429 430 0.867753 CTCCGTTCTTCCATCTCGCG 60.868 60.000 0.00 0.00 0.00 5.87
430 431 0.456221 TCTCCGTTCTTCCATCTCGC 59.544 55.000 0.00 0.00 0.00 5.03
431 432 2.544694 CCATCTCCGTTCTTCCATCTCG 60.545 54.545 0.00 0.00 0.00 4.04
432 433 2.224161 CCCATCTCCGTTCTTCCATCTC 60.224 54.545 0.00 0.00 0.00 2.75
433 434 1.765314 CCCATCTCCGTTCTTCCATCT 59.235 52.381 0.00 0.00 0.00 2.90
434 435 1.202698 CCCCATCTCCGTTCTTCCATC 60.203 57.143 0.00 0.00 0.00 3.51
435 436 0.839946 CCCCATCTCCGTTCTTCCAT 59.160 55.000 0.00 0.00 0.00 3.41
436 437 0.252513 TCCCCATCTCCGTTCTTCCA 60.253 55.000 0.00 0.00 0.00 3.53
437 438 0.909623 TTCCCCATCTCCGTTCTTCC 59.090 55.000 0.00 0.00 0.00 3.46
438 439 2.781681 TTTCCCCATCTCCGTTCTTC 57.218 50.000 0.00 0.00 0.00 2.87
439 440 2.880167 GCTTTTCCCCATCTCCGTTCTT 60.880 50.000 0.00 0.00 0.00 2.52
440 441 1.340114 GCTTTTCCCCATCTCCGTTCT 60.340 52.381 0.00 0.00 0.00 3.01
441 442 1.095600 GCTTTTCCCCATCTCCGTTC 58.904 55.000 0.00 0.00 0.00 3.95
442 443 0.323451 GGCTTTTCCCCATCTCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
443 444 1.303282 GGCTTTTCCCCATCTCCGT 59.697 57.895 0.00 0.00 0.00 4.69
444 445 0.323360 TTGGCTTTTCCCCATCTCCG 60.323 55.000 0.00 0.00 31.26 4.63
445 446 1.186200 GTTGGCTTTTCCCCATCTCC 58.814 55.000 0.00 0.00 31.26 3.71
446 447 0.811281 CGTTGGCTTTTCCCCATCTC 59.189 55.000 0.00 0.00 31.26 2.75
447 448 0.404040 TCGTTGGCTTTTCCCCATCT 59.596 50.000 0.00 0.00 31.26 2.90
448 449 0.526211 GTCGTTGGCTTTTCCCCATC 59.474 55.000 0.00 0.00 31.26 3.51
449 450 0.112412 AGTCGTTGGCTTTTCCCCAT 59.888 50.000 0.00 0.00 31.26 4.00
450 451 0.821711 CAGTCGTTGGCTTTTCCCCA 60.822 55.000 0.00 0.00 0.00 4.96
451 452 0.536460 TCAGTCGTTGGCTTTTCCCC 60.536 55.000 0.00 0.00 0.00 4.81
452 453 0.875059 CTCAGTCGTTGGCTTTTCCC 59.125 55.000 0.00 0.00 0.00 3.97
453 454 0.238553 GCTCAGTCGTTGGCTTTTCC 59.761 55.000 0.00 0.00 0.00 3.13
454 455 0.238553 GGCTCAGTCGTTGGCTTTTC 59.761 55.000 0.00 0.00 0.00 2.29
455 456 0.179018 AGGCTCAGTCGTTGGCTTTT 60.179 50.000 0.00 0.00 32.59 2.27
456 457 0.886490 CAGGCTCAGTCGTTGGCTTT 60.886 55.000 0.00 0.00 34.31 3.51
457 458 1.302033 CAGGCTCAGTCGTTGGCTT 60.302 57.895 0.00 0.00 34.31 4.35
458 459 2.345244 CAGGCTCAGTCGTTGGCT 59.655 61.111 0.00 0.00 37.06 4.75
459 460 3.426568 GCAGGCTCAGTCGTTGGC 61.427 66.667 0.00 0.00 0.00 4.52
460 461 2.031012 TGCAGGCTCAGTCGTTGG 59.969 61.111 0.00 0.00 0.00 3.77
461 462 2.661566 CGTGCAGGCTCAGTCGTTG 61.662 63.158 0.00 0.00 0.00 4.10
462 463 2.356313 CGTGCAGGCTCAGTCGTT 60.356 61.111 0.00 0.00 0.00 3.85
465 466 4.724602 TCGCGTGCAGGCTCAGTC 62.725 66.667 27.01 0.00 0.00 3.51
466 467 4.731612 CTCGCGTGCAGGCTCAGT 62.732 66.667 27.01 0.00 0.00 3.41
467 468 3.921767 TTCTCGCGTGCAGGCTCAG 62.922 63.158 27.01 21.45 0.00 3.35
468 469 3.513768 TTTCTCGCGTGCAGGCTCA 62.514 57.895 27.01 13.71 0.00 4.26
469 470 2.738521 TTTCTCGCGTGCAGGCTC 60.739 61.111 27.01 1.93 0.00 4.70
470 471 3.044305 GTTTCTCGCGTGCAGGCT 61.044 61.111 27.01 0.00 0.00 4.58
471 472 3.345808 TGTTTCTCGCGTGCAGGC 61.346 61.111 21.16 21.16 0.00 4.85
472 473 2.551270 GTGTTTCTCGCGTGCAGG 59.449 61.111 5.77 1.01 0.00 4.85
473 474 2.168621 CGTGTTTCTCGCGTGCAG 59.831 61.111 5.77 0.00 43.87 4.41
479 480 1.750351 GGGTTTTTCGTGTTTCTCGC 58.250 50.000 0.00 0.00 0.00 5.03
480 481 1.918543 GCGGGTTTTTCGTGTTTCTCG 60.919 52.381 0.00 0.00 0.00 4.04
481 482 1.750351 GCGGGTTTTTCGTGTTTCTC 58.250 50.000 0.00 0.00 0.00 2.87
482 483 0.028374 CGCGGGTTTTTCGTGTTTCT 59.972 50.000 0.00 0.00 33.99 2.52
483 484 2.487006 CGCGGGTTTTTCGTGTTTC 58.513 52.632 0.00 0.00 33.99 2.78
484 485 4.694102 CGCGGGTTTTTCGTGTTT 57.306 50.000 0.00 0.00 33.99 2.83
487 488 0.931202 GGAAACGCGGGTTTTTCGTG 60.931 55.000 28.31 0.00 46.04 4.35
488 489 1.356270 GGAAACGCGGGTTTTTCGT 59.644 52.632 28.31 9.05 46.04 3.85
489 490 4.215330 GGAAACGCGGGTTTTTCG 57.785 55.556 28.31 3.35 46.04 3.46
501 502 2.563427 GCTTGGCTGAGCGGAAAC 59.437 61.111 0.00 0.00 32.23 2.78
513 514 2.406452 AAAACGGCTTCGCAGCTTGG 62.406 55.000 7.07 0.00 46.44 3.61
514 515 0.594796 AAAAACGGCTTCGCAGCTTG 60.595 50.000 7.07 2.64 46.44 4.01
515 516 0.594796 CAAAAACGGCTTCGCAGCTT 60.595 50.000 7.07 0.00 46.44 3.74
516 517 1.008538 CAAAAACGGCTTCGCAGCT 60.009 52.632 7.07 0.00 46.44 4.24
517 518 2.648318 GCAAAAACGGCTTCGCAGC 61.648 57.895 0.00 0.00 46.52 5.25
518 519 0.664166 ATGCAAAAACGGCTTCGCAG 60.664 50.000 0.00 0.00 37.41 5.18
519 520 0.662970 GATGCAAAAACGGCTTCGCA 60.663 50.000 0.00 0.00 37.41 5.10
520 521 1.344226 GGATGCAAAAACGGCTTCGC 61.344 55.000 0.00 0.00 36.58 4.70
521 522 1.065031 CGGATGCAAAAACGGCTTCG 61.065 55.000 0.00 0.00 36.58 3.79
522 523 0.039527 ACGGATGCAAAAACGGCTTC 60.040 50.000 0.00 0.00 35.40 3.86
523 524 0.039527 GACGGATGCAAAAACGGCTT 60.040 50.000 0.00 0.00 0.00 4.35
524 525 1.579429 GACGGATGCAAAAACGGCT 59.421 52.632 0.00 0.00 0.00 5.52
525 526 1.795962 CGACGGATGCAAAAACGGC 60.796 57.895 0.00 0.00 0.00 5.68
526 527 0.179225 CTCGACGGATGCAAAAACGG 60.179 55.000 0.00 0.00 0.00 4.44
527 528 0.789383 GCTCGACGGATGCAAAAACG 60.789 55.000 0.00 0.00 0.00 3.60
528 529 0.454452 GGCTCGACGGATGCAAAAAC 60.454 55.000 0.00 0.00 0.00 2.43
529 530 0.886938 TGGCTCGACGGATGCAAAAA 60.887 50.000 0.00 0.00 0.00 1.94
530 531 1.298157 CTGGCTCGACGGATGCAAAA 61.298 55.000 0.00 0.00 0.00 2.44
531 532 1.741401 CTGGCTCGACGGATGCAAA 60.741 57.895 0.00 0.00 0.00 3.68
532 533 2.125552 CTGGCTCGACGGATGCAA 60.126 61.111 0.00 0.00 0.00 4.08
533 534 3.356639 GACTGGCTCGACGGATGCA 62.357 63.158 0.00 0.00 0.00 3.96
534 535 2.583593 GACTGGCTCGACGGATGC 60.584 66.667 0.00 0.00 0.00 3.91
535 536 2.105128 GGACTGGCTCGACGGATG 59.895 66.667 0.00 0.00 0.00 3.51
536 537 3.148279 GGGACTGGCTCGACGGAT 61.148 66.667 0.00 0.00 0.00 4.18
537 538 4.671590 TGGGACTGGCTCGACGGA 62.672 66.667 0.00 0.00 0.00 4.69
538 539 4.135153 CTGGGACTGGCTCGACGG 62.135 72.222 0.00 0.00 0.00 4.79
539 540 1.592400 TAACTGGGACTGGCTCGACG 61.592 60.000 0.00 0.00 0.00 5.12
540 541 0.606604 TTAACTGGGACTGGCTCGAC 59.393 55.000 0.00 0.00 0.00 4.20
541 542 1.001633 GTTTAACTGGGACTGGCTCGA 59.998 52.381 0.00 0.00 0.00 4.04
542 543 1.439679 GTTTAACTGGGACTGGCTCG 58.560 55.000 0.00 0.00 0.00 5.03
543 544 1.439679 CGTTTAACTGGGACTGGCTC 58.560 55.000 0.00 0.00 0.00 4.70
544 545 0.036306 CCGTTTAACTGGGACTGGCT 59.964 55.000 0.00 0.00 0.00 4.75
545 546 2.551644 CCGTTTAACTGGGACTGGC 58.448 57.895 0.00 0.00 0.00 4.85
552 553 1.404035 GCTATTGGCCCGTTTAACTGG 59.596 52.381 0.00 1.02 34.27 4.00
553 554 2.354821 GAGCTATTGGCCCGTTTAACTG 59.645 50.000 0.00 0.00 43.05 3.16
554 555 2.640184 GAGCTATTGGCCCGTTTAACT 58.360 47.619 0.00 0.00 43.05 2.24
555 556 1.674441 GGAGCTATTGGCCCGTTTAAC 59.326 52.381 0.00 0.00 43.05 2.01
556 557 1.409101 GGGAGCTATTGGCCCGTTTAA 60.409 52.381 0.00 0.00 43.05 1.52
557 558 0.181824 GGGAGCTATTGGCCCGTTTA 59.818 55.000 0.00 0.00 43.05 2.01
558 559 1.076995 GGGAGCTATTGGCCCGTTT 60.077 57.895 0.00 0.00 43.05 3.60
962 963 0.396435 TCTTGTCAACGGCAGTGGAT 59.604 50.000 0.00 0.00 32.03 3.41
1047 1048 4.903010 ACAAACTCGCGCCCACGT 62.903 61.111 0.00 0.00 42.83 4.49
1101 1102 6.128172 CCATAGAATTGGTCAAGAACACAGAC 60.128 42.308 0.00 0.00 31.74 3.51
1621 1622 4.936396 CAAGTTTTGCTTCACACGAATC 57.064 40.909 0.00 0.00 34.69 2.52
1761 1764 1.040339 TTCGGCAGCCCAGTTTTGTT 61.040 50.000 5.63 0.00 0.00 2.83
1762 1765 0.827507 ATTCGGCAGCCCAGTTTTGT 60.828 50.000 5.63 0.00 0.00 2.83
2357 2361 9.263538 CCGATCTATCTAGCTTATCGTATTAGT 57.736 37.037 0.00 0.00 38.15 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.