Multiple sequence alignment - TraesCS4A01G336700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G336700 chr4A 100.000 2498 0 0 1 2498 619180209 619182706 0.000000e+00 4614.0
1 TraesCS4A01G336700 chr4A 96.386 166 6 0 4 169 628870419 628870254 8.800000e-70 274.0
2 TraesCS4A01G336700 chr4A 95.808 167 6 1 1 166 29035701 29035867 4.100000e-68 268.0
3 TraesCS4A01G336700 chr4A 95.783 166 7 0 1 166 619166145 619166310 4.100000e-68 268.0
4 TraesCS4A01G336700 chr4A 94.798 173 5 3 2051 2222 487887270 487887439 1.470000e-67 267.0
5 TraesCS4A01G336700 chr7D 94.752 1753 87 5 167 1917 98406349 98404600 0.000000e+00 2723.0
6 TraesCS4A01G336700 chr4D 94.514 1750 83 9 167 1914 504270290 504272028 0.000000e+00 2687.0
7 TraesCS4A01G336700 chr4D 94.185 1754 86 10 167 1914 466289320 466291063 0.000000e+00 2660.0
8 TraesCS4A01G336700 chr1D 94.245 1755 87 9 167 1920 421086803 421085062 0.000000e+00 2669.0
9 TraesCS4A01G336700 chr2A 93.796 1757 97 8 167 1917 68890404 68888654 0.000000e+00 2630.0
10 TraesCS4A01G336700 chr2A 93.825 1749 104 3 168 1915 165347618 165345873 0.000000e+00 2628.0
11 TraesCS4A01G336700 chr3D 93.771 1750 94 7 167 1914 479622678 479624414 0.000000e+00 2614.0
12 TraesCS4A01G336700 chr3A 93.200 1750 92 7 167 1914 113367112 113365388 0.000000e+00 2547.0
13 TraesCS4A01G336700 chr3A 95.266 169 7 1 4 171 512860413 512860245 1.470000e-67 267.0
14 TraesCS4A01G336700 chr6A 92.971 1750 117 6 170 1917 479912707 479910962 0.000000e+00 2545.0
15 TraesCS4A01G336700 chr3B 89.497 1771 131 18 168 1914 496764855 496766594 0.000000e+00 2189.0
16 TraesCS4A01G336700 chr3B 95.858 169 4 2 2054 2222 52711698 52711533 1.140000e-68 270.0
17 TraesCS4A01G336700 chr5A 96.450 169 4 2 4 172 688750792 688750626 6.800000e-71 278.0
18 TraesCS4A01G336700 chr5A 96.914 162 5 0 4 165 688757719 688757558 3.170000e-69 272.0
19 TraesCS4A01G336700 chr5A 95.833 168 5 1 2053 2220 568113480 568113315 1.140000e-68 270.0
20 TraesCS4A01G336700 chr2D 94.972 179 4 3 2046 2222 638883778 638883953 2.450000e-70 276.0
21 TraesCS4A01G336700 chr7B 95.402 174 5 2 2050 2222 663257895 663257724 8.800000e-70 274.0
22 TraesCS4A01G336700 chr5B 95.376 173 6 1 2050 2222 687668266 687668096 8.800000e-70 274.0
23 TraesCS4A01G336700 chr5B 95.294 170 6 1 2053 2222 253187371 253187204 4.100000e-68 268.0
24 TraesCS4A01G336700 chr5B 83.945 218 13 6 2265 2464 692558820 692559033 3.280000e-44 189.0
25 TraesCS4A01G336700 chr7A 96.933 163 4 1 4 166 2626385 2626224 3.170000e-69 272.0
26 TraesCS4A01G336700 chr7A 95.783 166 6 1 4 169 2619401 2619237 1.470000e-67 267.0
27 TraesCS4A01G336700 chr4B 94.798 173 5 3 2051 2222 665949496 665949327 1.470000e-67 267.0
28 TraesCS4A01G336700 chr1A 95.783 166 6 1 4 169 330753097 330752933 1.470000e-67 267.0
29 TraesCS4A01G336700 chr2B 94.286 175 6 3 2050 2222 551636431 551636603 5.300000e-67 265.0
30 TraesCS4A01G336700 chr5D 92.258 155 3 5 2325 2471 548347848 548348001 7.000000e-51 211.0
31 TraesCS4A01G336700 chr5D 94.118 51 1 2 1916 1964 548347709 548347759 2.660000e-10 76.8
32 TraesCS4A01G336700 chr5D 100.000 28 0 0 2471 2498 548348025 548348052 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G336700 chr4A 619180209 619182706 2497 False 4614 4614 100.000 1 2498 1 chr4A.!!$F4 2497
1 TraesCS4A01G336700 chr7D 98404600 98406349 1749 True 2723 2723 94.752 167 1917 1 chr7D.!!$R1 1750
2 TraesCS4A01G336700 chr4D 504270290 504272028 1738 False 2687 2687 94.514 167 1914 1 chr4D.!!$F2 1747
3 TraesCS4A01G336700 chr4D 466289320 466291063 1743 False 2660 2660 94.185 167 1914 1 chr4D.!!$F1 1747
4 TraesCS4A01G336700 chr1D 421085062 421086803 1741 True 2669 2669 94.245 167 1920 1 chr1D.!!$R1 1753
5 TraesCS4A01G336700 chr2A 68888654 68890404 1750 True 2630 2630 93.796 167 1917 1 chr2A.!!$R1 1750
6 TraesCS4A01G336700 chr2A 165345873 165347618 1745 True 2628 2628 93.825 168 1915 1 chr2A.!!$R2 1747
7 TraesCS4A01G336700 chr3D 479622678 479624414 1736 False 2614 2614 93.771 167 1914 1 chr3D.!!$F1 1747
8 TraesCS4A01G336700 chr3A 113365388 113367112 1724 True 2547 2547 93.200 167 1914 1 chr3A.!!$R1 1747
9 TraesCS4A01G336700 chr6A 479910962 479912707 1745 True 2545 2545 92.971 170 1917 1 chr6A.!!$R1 1747
10 TraesCS4A01G336700 chr3B 496764855 496766594 1739 False 2189 2189 89.497 168 1914 1 chr3B.!!$F1 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.0 15.01 15.01 46.2 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2047 0.035725 TAGACGCGTCTTCTGGGAGA 60.036 55.0 42.9 22.4 40.93 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.338620 TCAGTGCTTGACCGGTCG 59.661 61.111 28.70 16.96 0.00 4.79
18 19 2.738521 CAGTGCTTGACCGGTCGG 60.739 66.667 28.70 23.39 42.03 4.79
19 20 2.915659 AGTGCTTGACCGGTCGGA 60.916 61.111 28.70 18.78 38.96 4.55
20 21 2.264794 GTGCTTGACCGGTCGGAT 59.735 61.111 28.70 0.00 38.96 4.18
21 22 1.810030 GTGCTTGACCGGTCGGATC 60.810 63.158 28.70 17.53 38.96 3.36
22 23 2.582498 GCTTGACCGGTCGGATCG 60.582 66.667 28.70 15.46 38.96 3.69
23 24 2.882876 CTTGACCGGTCGGATCGT 59.117 61.111 28.70 0.00 38.96 3.73
24 25 1.516386 CTTGACCGGTCGGATCGTG 60.516 63.158 28.70 9.94 38.96 4.35
25 26 1.929806 CTTGACCGGTCGGATCGTGA 61.930 60.000 28.70 6.50 38.96 4.35
26 27 1.525718 TTGACCGGTCGGATCGTGAA 61.526 55.000 28.70 12.54 38.96 3.18
27 28 1.226603 GACCGGTCGGATCGTGAAG 60.227 63.158 20.85 0.00 38.96 3.02
28 29 1.651240 GACCGGTCGGATCGTGAAGA 61.651 60.000 20.85 0.00 38.96 2.87
29 30 1.226603 CCGGTCGGATCGTGAAGAC 60.227 63.158 10.10 0.00 37.50 3.01
30 31 2.914797 CCGGTCGGATCGTGAAGACG 62.915 65.000 10.10 0.00 41.70 4.18
31 32 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
32 33 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
33 34 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
34 35 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
40 41 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
41 42 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
42 43 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
43 44 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
44 45 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
45 46 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
46 47 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
47 48 3.076621 AGACGTACGACTACATCAACCA 58.923 45.455 24.41 0.00 0.00 3.67
48 49 3.503363 AGACGTACGACTACATCAACCAA 59.497 43.478 24.41 0.00 0.00 3.67
49 50 4.022935 AGACGTACGACTACATCAACCAAA 60.023 41.667 24.41 0.00 0.00 3.28
50 51 3.983344 ACGTACGACTACATCAACCAAAC 59.017 43.478 24.41 0.00 0.00 2.93
51 52 3.982701 CGTACGACTACATCAACCAAACA 59.017 43.478 10.44 0.00 0.00 2.83
52 53 4.143473 CGTACGACTACATCAACCAAACAC 60.143 45.833 10.44 0.00 0.00 3.32
53 54 4.067972 ACGACTACATCAACCAAACACT 57.932 40.909 0.00 0.00 0.00 3.55
54 55 4.448210 ACGACTACATCAACCAAACACTT 58.552 39.130 0.00 0.00 0.00 3.16
55 56 4.510340 ACGACTACATCAACCAAACACTTC 59.490 41.667 0.00 0.00 0.00 3.01
56 57 4.084013 CGACTACATCAACCAAACACTTCC 60.084 45.833 0.00 0.00 0.00 3.46
57 58 3.813166 ACTACATCAACCAAACACTTCCG 59.187 43.478 0.00 0.00 0.00 4.30
58 59 2.650322 ACATCAACCAAACACTTCCGT 58.350 42.857 0.00 0.00 0.00 4.69
59 60 3.020984 ACATCAACCAAACACTTCCGTT 58.979 40.909 0.00 0.00 0.00 4.44
60 61 3.181491 ACATCAACCAAACACTTCCGTTG 60.181 43.478 0.00 0.00 36.09 4.10
61 62 2.438411 TCAACCAAACACTTCCGTTGT 58.562 42.857 0.00 0.00 36.17 3.32
62 63 2.420722 TCAACCAAACACTTCCGTTGTC 59.579 45.455 0.00 0.00 36.17 3.18
63 64 1.011333 ACCAAACACTTCCGTTGTCG 58.989 50.000 0.00 0.00 0.00 4.35
64 65 1.292061 CCAAACACTTCCGTTGTCGA 58.708 50.000 0.00 0.00 39.71 4.20
65 66 1.871039 CCAAACACTTCCGTTGTCGAT 59.129 47.619 0.00 0.00 39.71 3.59
66 67 2.096417 CCAAACACTTCCGTTGTCGATC 60.096 50.000 0.00 0.00 39.71 3.69
67 68 2.800544 CAAACACTTCCGTTGTCGATCT 59.199 45.455 0.00 0.00 39.71 2.75
68 69 3.928727 AACACTTCCGTTGTCGATCTA 57.071 42.857 0.00 0.00 39.71 1.98
69 70 3.213249 ACACTTCCGTTGTCGATCTAC 57.787 47.619 0.00 0.00 39.71 2.59
70 71 2.818432 ACACTTCCGTTGTCGATCTACT 59.182 45.455 0.00 0.00 39.71 2.57
71 72 4.005650 ACACTTCCGTTGTCGATCTACTA 58.994 43.478 0.00 0.00 39.71 1.82
72 73 4.094590 ACACTTCCGTTGTCGATCTACTAG 59.905 45.833 0.00 0.00 39.71 2.57
73 74 3.626670 ACTTCCGTTGTCGATCTACTAGG 59.373 47.826 0.00 0.00 39.71 3.02
74 75 3.272574 TCCGTTGTCGATCTACTAGGT 57.727 47.619 0.00 0.00 39.71 3.08
75 76 4.406648 TCCGTTGTCGATCTACTAGGTA 57.593 45.455 0.00 0.00 39.71 3.08
76 77 4.965814 TCCGTTGTCGATCTACTAGGTAT 58.034 43.478 0.00 0.00 39.71 2.73
77 78 4.753610 TCCGTTGTCGATCTACTAGGTATG 59.246 45.833 0.00 0.00 39.71 2.39
78 79 4.514441 CCGTTGTCGATCTACTAGGTATGT 59.486 45.833 0.00 0.00 39.71 2.29
79 80 5.698089 CCGTTGTCGATCTACTAGGTATGTA 59.302 44.000 0.00 0.00 39.71 2.29
80 81 6.128607 CCGTTGTCGATCTACTAGGTATGTAG 60.129 46.154 0.00 0.00 39.71 2.74
81 82 6.644181 CGTTGTCGATCTACTAGGTATGTAGA 59.356 42.308 6.14 6.14 46.75 2.59
90 91 7.451732 TCTACTAGGTATGTAGATCACACTCC 58.548 42.308 0.00 4.44 40.72 3.85
91 92 5.386924 ACTAGGTATGTAGATCACACTCCC 58.613 45.833 0.00 0.00 40.86 4.30
92 93 3.577919 AGGTATGTAGATCACACTCCCC 58.422 50.000 0.00 0.00 40.86 4.81
93 94 2.633481 GGTATGTAGATCACACTCCCCC 59.367 54.545 0.00 0.00 40.86 5.40
109 110 2.457366 CCCCCTCGTTGCTATACATC 57.543 55.000 0.00 0.00 0.00 3.06
110 111 1.691976 CCCCCTCGTTGCTATACATCA 59.308 52.381 0.00 0.00 0.00 3.07
111 112 2.548067 CCCCCTCGTTGCTATACATCAC 60.548 54.545 0.00 0.00 0.00 3.06
112 113 2.548067 CCCCTCGTTGCTATACATCACC 60.548 54.545 0.00 0.00 0.00 4.02
113 114 2.102420 CCCTCGTTGCTATACATCACCA 59.898 50.000 0.00 0.00 0.00 4.17
114 115 3.244215 CCCTCGTTGCTATACATCACCAT 60.244 47.826 0.00 0.00 0.00 3.55
115 116 3.742882 CCTCGTTGCTATACATCACCATG 59.257 47.826 0.00 0.00 35.92 3.66
116 117 4.501400 CCTCGTTGCTATACATCACCATGA 60.501 45.833 0.00 0.00 33.72 3.07
117 118 5.213891 TCGTTGCTATACATCACCATGAT 57.786 39.130 0.00 0.00 37.65 2.45
118 119 5.230182 TCGTTGCTATACATCACCATGATC 58.770 41.667 0.00 0.00 34.28 2.92
119 120 5.011023 TCGTTGCTATACATCACCATGATCT 59.989 40.000 0.00 0.00 34.28 2.75
120 121 5.698089 CGTTGCTATACATCACCATGATCTT 59.302 40.000 0.00 0.00 34.28 2.40
121 122 6.347160 CGTTGCTATACATCACCATGATCTTG 60.347 42.308 0.00 1.60 34.28 3.02
122 123 4.999311 TGCTATACATCACCATGATCTTGC 59.001 41.667 3.07 0.00 34.28 4.01
123 124 4.999311 GCTATACATCACCATGATCTTGCA 59.001 41.667 3.07 0.00 34.28 4.08
124 125 5.646793 GCTATACATCACCATGATCTTGCAT 59.353 40.000 3.07 0.00 34.28 3.96
125 126 5.959618 ATACATCACCATGATCTTGCATG 57.040 39.130 3.07 7.27 44.05 4.06
126 127 3.628008 ACATCACCATGATCTTGCATGT 58.372 40.909 3.07 7.79 43.16 3.21
127 128 3.380320 ACATCACCATGATCTTGCATGTG 59.620 43.478 13.65 11.47 43.16 3.21
128 129 1.746787 TCACCATGATCTTGCATGTGC 59.253 47.619 3.07 0.00 43.16 4.57
129 130 0.736636 ACCATGATCTTGCATGTGCG 59.263 50.000 3.07 0.00 43.16 5.34
130 131 0.736636 CCATGATCTTGCATGTGCGT 59.263 50.000 3.07 0.00 43.16 5.24
131 132 1.941975 CCATGATCTTGCATGTGCGTA 59.058 47.619 3.07 0.00 43.16 4.42
132 133 2.551032 CCATGATCTTGCATGTGCGTAT 59.449 45.455 3.07 0.00 43.16 3.06
133 134 3.551551 CATGATCTTGCATGTGCGTATG 58.448 45.455 0.01 0.00 45.83 2.39
134 135 2.903798 TGATCTTGCATGTGCGTATGA 58.096 42.857 4.36 0.00 45.83 2.15
135 136 3.269178 TGATCTTGCATGTGCGTATGAA 58.731 40.909 4.36 0.00 45.83 2.57
136 137 3.878699 TGATCTTGCATGTGCGTATGAAT 59.121 39.130 4.36 0.00 45.83 2.57
137 138 4.336153 TGATCTTGCATGTGCGTATGAATT 59.664 37.500 4.36 0.00 45.83 2.17
138 139 4.700268 TCTTGCATGTGCGTATGAATTT 57.300 36.364 4.36 0.00 45.83 1.82
139 140 5.058149 TCTTGCATGTGCGTATGAATTTT 57.942 34.783 4.36 0.00 45.83 1.82
140 141 5.468592 TCTTGCATGTGCGTATGAATTTTT 58.531 33.333 4.36 0.00 45.83 1.94
163 164 8.631676 TTTTTGAAATTACTACGAAACCCAAC 57.368 30.769 0.00 0.00 0.00 3.77
164 165 6.939132 TTGAAATTACTACGAAACCCAACA 57.061 33.333 0.00 0.00 0.00 3.33
165 166 6.548441 TGAAATTACTACGAAACCCAACAG 57.452 37.500 0.00 0.00 0.00 3.16
489 493 3.552132 TGTACTTGCACCACTTCTTCA 57.448 42.857 0.00 0.00 0.00 3.02
491 495 4.460263 TGTACTTGCACCACTTCTTCATT 58.540 39.130 0.00 0.00 0.00 2.57
557 561 4.695993 TCAACTGCCATCGCGCCA 62.696 61.111 0.00 0.00 38.08 5.69
578 582 1.639722 TCGTTGGGTCAGGAATCAGA 58.360 50.000 0.00 0.00 0.00 3.27
640 644 2.569059 AGATTCATTCTGCATGTCCGG 58.431 47.619 0.00 0.00 34.06 5.14
755 759 2.676471 CAAGGGAAGGGGTTGGCG 60.676 66.667 0.00 0.00 0.00 5.69
759 763 2.114411 GGAAGGGGTTGGCGTTGA 59.886 61.111 0.00 0.00 0.00 3.18
760 764 1.304134 GGAAGGGGTTGGCGTTGAT 60.304 57.895 0.00 0.00 0.00 2.57
793 797 1.692395 TCATGGCGATGGGGAGGAA 60.692 57.895 8.98 0.00 0.00 3.36
796 800 1.700042 ATGGCGATGGGGAGGAAGAC 61.700 60.000 0.00 0.00 0.00 3.01
892 898 2.830923 AGGAGAAGAGTGACAGTCATGG 59.169 50.000 6.51 0.00 0.00 3.66
962 968 1.532868 GACTCCATGACTTGTGTGCAC 59.467 52.381 10.75 10.75 0.00 4.57
1001 1022 3.055719 CCGGCCGTTGACAGCAAT 61.056 61.111 26.12 0.00 36.22 3.56
1074 1095 1.584380 CGAGGAAGACCCGAAGACGT 61.584 60.000 0.00 0.00 40.87 4.34
1178 1202 1.242076 CCAACTCACTTCTGCAAGGG 58.758 55.000 0.00 0.00 33.80 3.95
1373 1399 3.711086 CCGTTCATCAGATCAAGATCGT 58.289 45.455 4.54 0.00 42.48 3.73
1479 1505 2.034879 CGGGAAGCACAATGACGCT 61.035 57.895 0.00 0.00 41.20 5.07
1560 1592 7.147863 TGCTAGTTGATGGTTTATGCATTGAAT 60.148 33.333 3.54 0.00 0.00 2.57
1651 1683 0.320050 TGATGTGTGCTGCCGAAGTA 59.680 50.000 0.00 0.00 0.00 2.24
1699 1731 1.279271 GAGGTTACCACACATCAGGCT 59.721 52.381 3.51 0.00 0.00 4.58
1722 1754 2.961741 TGCATACAACCAAACACCATGT 59.038 40.909 0.00 0.00 0.00 3.21
1778 1813 1.768870 ACCAGACAGTGTGGTTTAGCT 59.231 47.619 16.80 0.00 46.73 3.32
1779 1814 2.146342 CCAGACAGTGTGGTTTAGCTG 58.854 52.381 8.67 0.00 35.31 4.24
1780 1815 1.532868 CAGACAGTGTGGTTTAGCTGC 59.467 52.381 0.00 0.00 32.65 5.25
1781 1816 0.875059 GACAGTGTGGTTTAGCTGCC 59.125 55.000 0.00 0.00 32.65 4.85
1824 1890 4.465660 AGGCAACCAAACAACATGCATATA 59.534 37.500 0.00 0.00 38.73 0.86
1884 1950 0.529773 GAAGTGTATGCGATGCGGGA 60.530 55.000 0.00 0.00 0.00 5.14
1886 1952 0.530650 AGTGTATGCGATGCGGGAAG 60.531 55.000 0.00 0.00 0.00 3.46
1917 1983 1.066454 GGCAACCAAATACGCCCATAC 59.934 52.381 0.00 0.00 38.67 2.39
1920 1986 1.675552 ACCAAATACGCCCATACTGC 58.324 50.000 0.00 0.00 0.00 4.40
1921 1987 0.951558 CCAAATACGCCCATACTGCC 59.048 55.000 0.00 0.00 0.00 4.85
1922 1988 0.951558 CAAATACGCCCATACTGCCC 59.048 55.000 0.00 0.00 0.00 5.36
1923 1989 0.843984 AAATACGCCCATACTGCCCT 59.156 50.000 0.00 0.00 0.00 5.19
1924 1990 1.724545 AATACGCCCATACTGCCCTA 58.275 50.000 0.00 0.00 0.00 3.53
1925 1991 0.974383 ATACGCCCATACTGCCCTAC 59.026 55.000 0.00 0.00 0.00 3.18
1926 1992 1.117142 TACGCCCATACTGCCCTACC 61.117 60.000 0.00 0.00 0.00 3.18
1927 1993 2.140792 CGCCCATACTGCCCTACCT 61.141 63.158 0.00 0.00 0.00 3.08
1928 1994 1.696097 CGCCCATACTGCCCTACCTT 61.696 60.000 0.00 0.00 0.00 3.50
1929 1995 0.179018 GCCCATACTGCCCTACCTTG 60.179 60.000 0.00 0.00 0.00 3.61
1930 1996 0.474184 CCCATACTGCCCTACCTTGG 59.526 60.000 0.00 0.00 0.00 3.61
1936 2002 3.335711 GCCCTACCTTGGCCATCT 58.664 61.111 6.09 0.00 43.33 2.90
1937 2003 1.152881 GCCCTACCTTGGCCATCTG 60.153 63.158 6.09 0.00 43.33 2.90
1938 2004 1.152881 CCCTACCTTGGCCATCTGC 60.153 63.158 6.09 0.00 40.16 4.26
1939 2005 1.524621 CCTACCTTGGCCATCTGCG 60.525 63.158 6.09 0.00 42.61 5.18
1940 2006 1.221840 CTACCTTGGCCATCTGCGT 59.778 57.895 6.09 0.71 42.61 5.24
1941 2007 1.078497 TACCTTGGCCATCTGCGTG 60.078 57.895 6.09 0.00 42.61 5.34
1942 2008 3.818787 CCTTGGCCATCTGCGTGC 61.819 66.667 6.09 0.00 42.61 5.34
1943 2009 2.749044 CTTGGCCATCTGCGTGCT 60.749 61.111 6.09 0.00 42.61 4.40
1944 2010 2.282391 TTGGCCATCTGCGTGCTT 60.282 55.556 6.09 0.00 42.61 3.91
1945 2011 2.537792 CTTGGCCATCTGCGTGCTTG 62.538 60.000 6.09 0.00 42.61 4.01
1946 2012 3.818787 GGCCATCTGCGTGCTTGG 61.819 66.667 0.00 0.00 42.61 3.61
1947 2013 2.747460 GCCATCTGCGTGCTTGGA 60.747 61.111 11.48 0.70 0.00 3.53
1948 2014 2.758089 GCCATCTGCGTGCTTGGAG 61.758 63.158 11.48 0.00 0.00 3.86
1949 2015 2.110967 CCATCTGCGTGCTTGGAGG 61.111 63.158 3.87 0.00 0.00 4.30
1950 2016 1.078918 CATCTGCGTGCTTGGAGGA 60.079 57.895 0.00 0.00 0.00 3.71
1951 2017 0.674581 CATCTGCGTGCTTGGAGGAA 60.675 55.000 0.00 0.00 0.00 3.36
1952 2018 0.036732 ATCTGCGTGCTTGGAGGAAA 59.963 50.000 0.00 0.00 0.00 3.13
1953 2019 0.884704 TCTGCGTGCTTGGAGGAAAC 60.885 55.000 0.00 0.00 0.00 2.78
1954 2020 1.153066 TGCGTGCTTGGAGGAAACA 60.153 52.632 0.00 0.00 0.00 2.83
1955 2021 1.282875 GCGTGCTTGGAGGAAACAC 59.717 57.895 0.00 0.00 0.00 3.32
1956 2022 1.444119 GCGTGCTTGGAGGAAACACA 61.444 55.000 0.00 0.00 0.00 3.72
1957 2023 0.307760 CGTGCTTGGAGGAAACACAC 59.692 55.000 0.00 0.00 0.00 3.82
1958 2024 1.388547 GTGCTTGGAGGAAACACACA 58.611 50.000 0.00 0.00 0.00 3.72
1959 2025 1.956477 GTGCTTGGAGGAAACACACAT 59.044 47.619 0.00 0.00 0.00 3.21
1960 2026 1.955778 TGCTTGGAGGAAACACACATG 59.044 47.619 0.00 0.00 0.00 3.21
1961 2027 1.270550 GCTTGGAGGAAACACACATGG 59.729 52.381 0.00 0.00 0.00 3.66
1962 2028 1.270550 CTTGGAGGAAACACACATGGC 59.729 52.381 0.00 0.00 0.00 4.40
1963 2029 0.184692 TGGAGGAAACACACATGGCA 59.815 50.000 0.00 0.00 0.00 4.92
1964 2030 1.327303 GGAGGAAACACACATGGCAA 58.673 50.000 0.00 0.00 0.00 4.52
1965 2031 1.270550 GGAGGAAACACACATGGCAAG 59.729 52.381 0.00 0.00 0.00 4.01
1966 2032 0.675633 AGGAAACACACATGGCAAGC 59.324 50.000 0.00 0.00 0.00 4.01
1967 2033 0.388659 GGAAACACACATGGCAAGCA 59.611 50.000 0.00 0.00 0.00 3.91
1968 2034 1.001181 GGAAACACACATGGCAAGCAT 59.999 47.619 0.00 0.00 0.00 3.79
1969 2035 2.063266 GAAACACACATGGCAAGCATG 58.937 47.619 0.00 0.00 36.22 4.06
1970 2036 0.319083 AACACACATGGCAAGCATGG 59.681 50.000 0.00 0.00 34.56 3.66
1971 2037 0.828762 ACACACATGGCAAGCATGGT 60.829 50.000 0.00 0.00 34.56 3.55
1972 2038 0.389296 CACACATGGCAAGCATGGTG 60.389 55.000 0.00 7.25 34.56 4.17
1973 2039 1.447140 CACATGGCAAGCATGGTGC 60.447 57.895 0.00 4.45 45.46 5.01
1987 2053 4.324471 GTGCATGCACATCTCCCA 57.676 55.556 39.12 5.13 45.53 4.37
1988 2054 2.104267 GTGCATGCACATCTCCCAG 58.896 57.895 39.12 0.00 45.53 4.45
1989 2055 0.393402 GTGCATGCACATCTCCCAGA 60.393 55.000 39.12 3.75 45.53 3.86
1990 2056 0.328926 TGCATGCACATCTCCCAGAA 59.671 50.000 18.46 0.00 0.00 3.02
1991 2057 1.022735 GCATGCACATCTCCCAGAAG 58.977 55.000 14.21 0.00 0.00 2.85
1992 2058 1.407851 GCATGCACATCTCCCAGAAGA 60.408 52.381 14.21 0.00 0.00 2.87
1993 2059 2.286872 CATGCACATCTCCCAGAAGAC 58.713 52.381 0.00 0.00 0.00 3.01
1994 2060 0.247460 TGCACATCTCCCAGAAGACG 59.753 55.000 0.00 0.00 0.00 4.18
1995 2061 1.086634 GCACATCTCCCAGAAGACGC 61.087 60.000 0.00 0.00 0.00 5.19
1996 2062 0.803768 CACATCTCCCAGAAGACGCG 60.804 60.000 3.53 3.53 0.00 6.01
1997 2063 1.251527 ACATCTCCCAGAAGACGCGT 61.252 55.000 13.85 13.85 0.00 6.01
1998 2064 0.526524 CATCTCCCAGAAGACGCGTC 60.527 60.000 31.30 31.30 0.00 5.19
1999 2065 0.681564 ATCTCCCAGAAGACGCGTCT 60.682 55.000 34.98 34.98 42.75 4.18
2000 2066 0.035725 TCTCCCAGAAGACGCGTCTA 60.036 55.000 39.33 22.84 39.39 2.59
2001 2067 1.025812 CTCCCAGAAGACGCGTCTAT 58.974 55.000 39.33 28.13 39.39 1.98
2002 2068 0.738975 TCCCAGAAGACGCGTCTATG 59.261 55.000 39.33 35.02 39.39 2.23
2003 2069 0.456221 CCCAGAAGACGCGTCTATGT 59.544 55.000 39.33 25.87 39.39 2.29
2004 2070 1.674441 CCCAGAAGACGCGTCTATGTA 59.326 52.381 39.33 0.00 39.39 2.29
2005 2071 2.541178 CCCAGAAGACGCGTCTATGTAC 60.541 54.545 39.33 25.80 39.39 2.90
2006 2072 2.541178 CCAGAAGACGCGTCTATGTACC 60.541 54.545 39.33 22.93 39.39 3.34
2007 2073 2.355132 CAGAAGACGCGTCTATGTACCT 59.645 50.000 39.33 23.57 39.39 3.08
2008 2074 3.015327 AGAAGACGCGTCTATGTACCTT 58.985 45.455 39.33 22.81 39.39 3.50
2009 2075 3.442977 AGAAGACGCGTCTATGTACCTTT 59.557 43.478 39.33 22.05 39.39 3.11
2010 2076 4.637534 AGAAGACGCGTCTATGTACCTTTA 59.362 41.667 39.33 0.00 39.39 1.85
2011 2077 4.970662 AGACGCGTCTATGTACCTTTAA 57.029 40.909 38.67 0.00 38.35 1.52
2012 2078 5.314923 AGACGCGTCTATGTACCTTTAAA 57.685 39.130 38.67 0.00 38.35 1.52
2013 2079 5.098211 AGACGCGTCTATGTACCTTTAAAC 58.902 41.667 38.67 7.28 38.35 2.01
2014 2080 3.853671 ACGCGTCTATGTACCTTTAAACG 59.146 43.478 5.58 0.00 0.00 3.60
2015 2081 3.241322 CGCGTCTATGTACCTTTAAACGG 59.759 47.826 0.00 3.10 0.00 4.44
2016 2082 4.423732 GCGTCTATGTACCTTTAAACGGA 58.576 43.478 9.75 0.00 0.00 4.69
2017 2083 4.266265 GCGTCTATGTACCTTTAAACGGAC 59.734 45.833 9.75 2.39 0.00 4.79
2018 2084 4.496895 CGTCTATGTACCTTTAAACGGACG 59.503 45.833 9.75 0.00 37.19 4.79
2019 2085 4.800471 GTCTATGTACCTTTAAACGGACGG 59.200 45.833 9.75 0.72 0.00 4.79
2020 2086 3.959535 ATGTACCTTTAAACGGACGGA 57.040 42.857 9.75 0.00 0.00 4.69
2021 2087 3.959535 TGTACCTTTAAACGGACGGAT 57.040 42.857 9.75 0.00 0.00 4.18
2022 2088 3.848726 TGTACCTTTAAACGGACGGATC 58.151 45.455 9.75 0.00 0.00 3.36
2023 2089 3.257873 TGTACCTTTAAACGGACGGATCA 59.742 43.478 9.75 1.47 0.00 2.92
2024 2090 3.405823 ACCTTTAAACGGACGGATCAA 57.594 42.857 9.75 0.00 0.00 2.57
2025 2091 3.069289 ACCTTTAAACGGACGGATCAAC 58.931 45.455 9.75 0.00 0.00 3.18
2026 2092 2.417586 CCTTTAAACGGACGGATCAACC 59.582 50.000 0.00 0.00 0.00 3.77
2027 2093 2.097680 TTAAACGGACGGATCAACCC 57.902 50.000 0.00 0.00 34.64 4.11
2028 2094 0.975135 TAAACGGACGGATCAACCCA 59.025 50.000 0.00 0.00 34.64 4.51
2029 2095 0.108963 AAACGGACGGATCAACCCAA 59.891 50.000 0.00 0.00 34.64 4.12
2030 2096 0.321298 AACGGACGGATCAACCCAAG 60.321 55.000 0.00 0.00 34.64 3.61
2031 2097 1.189524 ACGGACGGATCAACCCAAGA 61.190 55.000 0.00 0.00 34.64 3.02
2032 2098 0.036765 CGGACGGATCAACCCAAGAA 60.037 55.000 0.00 0.00 34.64 2.52
2033 2099 1.406887 CGGACGGATCAACCCAAGAAT 60.407 52.381 0.00 0.00 34.64 2.40
2034 2100 2.159014 CGGACGGATCAACCCAAGAATA 60.159 50.000 0.00 0.00 34.64 1.75
2035 2101 3.203716 GGACGGATCAACCCAAGAATAC 58.796 50.000 0.00 0.00 34.64 1.89
2036 2102 3.118371 GGACGGATCAACCCAAGAATACT 60.118 47.826 0.00 0.00 34.64 2.12
2037 2103 4.100498 GGACGGATCAACCCAAGAATACTA 59.900 45.833 0.00 0.00 34.64 1.82
2038 2104 5.019785 ACGGATCAACCCAAGAATACTAC 57.980 43.478 0.00 0.00 34.64 2.73
2039 2105 4.049186 CGGATCAACCCAAGAATACTACG 58.951 47.826 0.00 0.00 34.64 3.51
2040 2106 3.808174 GGATCAACCCAAGAATACTACGC 59.192 47.826 0.00 0.00 0.00 4.42
2041 2107 3.965379 TCAACCCAAGAATACTACGCA 57.035 42.857 0.00 0.00 0.00 5.24
2042 2108 3.592059 TCAACCCAAGAATACTACGCAC 58.408 45.455 0.00 0.00 0.00 5.34
2043 2109 3.007074 TCAACCCAAGAATACTACGCACA 59.993 43.478 0.00 0.00 0.00 4.57
2044 2110 3.906720 ACCCAAGAATACTACGCACAT 57.093 42.857 0.00 0.00 0.00 3.21
2045 2111 3.793559 ACCCAAGAATACTACGCACATC 58.206 45.455 0.00 0.00 0.00 3.06
2046 2112 3.196901 ACCCAAGAATACTACGCACATCA 59.803 43.478 0.00 0.00 0.00 3.07
2047 2113 3.804325 CCCAAGAATACTACGCACATCAG 59.196 47.826 0.00 0.00 0.00 2.90
2048 2114 3.246226 CCAAGAATACTACGCACATCAGC 59.754 47.826 0.00 0.00 0.00 4.26
2060 2126 4.606457 GCACATCAGCGAAAAAGATACT 57.394 40.909 0.00 0.00 0.00 2.12
2061 2127 4.582459 GCACATCAGCGAAAAAGATACTC 58.418 43.478 0.00 0.00 0.00 2.59
2062 2128 4.494855 GCACATCAGCGAAAAAGATACTCC 60.495 45.833 0.00 0.00 0.00 3.85
2063 2129 4.034510 CACATCAGCGAAAAAGATACTCCC 59.965 45.833 0.00 0.00 0.00 4.30
2064 2130 4.080863 ACATCAGCGAAAAAGATACTCCCT 60.081 41.667 0.00 0.00 0.00 4.20
2065 2131 4.124851 TCAGCGAAAAAGATACTCCCTC 57.875 45.455 0.00 0.00 0.00 4.30
2066 2132 3.118738 TCAGCGAAAAAGATACTCCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
2067 2133 2.159085 AGCGAAAAAGATACTCCCTCCG 60.159 50.000 0.00 0.00 0.00 4.63
2068 2134 2.418334 GCGAAAAAGATACTCCCTCCGT 60.418 50.000 0.00 0.00 0.00 4.69
2069 2135 3.445857 CGAAAAAGATACTCCCTCCGTC 58.554 50.000 0.00 0.00 0.00 4.79
2070 2136 3.737355 CGAAAAAGATACTCCCTCCGTCC 60.737 52.174 0.00 0.00 0.00 4.79
2071 2137 1.400737 AAAGATACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
2072 2138 0.467659 AAGATACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
2073 2139 1.902432 GATACTCCCTCCGTCCGGG 60.902 68.421 0.00 0.00 43.38 5.73
2074 2140 2.637383 GATACTCCCTCCGTCCGGGT 62.637 65.000 0.00 0.00 42.56 5.28
2075 2141 2.923634 ATACTCCCTCCGTCCGGGTG 62.924 65.000 0.00 0.00 42.56 4.61
2077 2143 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
2078 2144 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
2079 2145 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
2080 2146 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
2081 2147 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
2082 2148 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
2083 2149 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
2084 2150 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
2085 2151 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
2086 2152 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
2087 2153 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2088 2154 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2089 2155 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2090 2156 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2091 2157 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
2092 2158 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2093 2159 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
2094 2160 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
2095 2161 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2096 2162 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2097 2163 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2098 2164 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2099 2165 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2100 2166 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2101 2167 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2102 2168 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2103 2169 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
2104 2170 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
2105 2171 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
2106 2172 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
2107 2173 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
2108 2174 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
2109 2175 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
2110 2176 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
2111 2177 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
2112 2178 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
2113 2179 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
2114 2180 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
2177 2243 9.959749 TTTAAAAACTACATCTGTGTGGAAATC 57.040 29.630 0.00 0.00 38.98 2.17
2178 2244 7.823745 AAAAACTACATCTGTGTGGAAATCT 57.176 32.000 0.00 0.00 38.98 2.40
2179 2245 8.918202 AAAAACTACATCTGTGTGGAAATCTA 57.082 30.769 0.00 0.00 38.98 1.98
2180 2246 8.553459 AAAACTACATCTGTGTGGAAATCTAG 57.447 34.615 0.00 0.00 38.98 2.43
2181 2247 6.859112 ACTACATCTGTGTGGAAATCTAGT 57.141 37.500 0.00 0.00 38.98 2.57
2182 2248 6.634805 ACTACATCTGTGTGGAAATCTAGTG 58.365 40.000 0.00 0.00 38.98 2.74
2183 2249 4.836825 ACATCTGTGTGGAAATCTAGTGG 58.163 43.478 0.00 0.00 37.14 4.00
2184 2250 4.287067 ACATCTGTGTGGAAATCTAGTGGT 59.713 41.667 0.00 0.00 37.14 4.16
2185 2251 5.483937 ACATCTGTGTGGAAATCTAGTGGTA 59.516 40.000 0.00 0.00 37.14 3.25
2186 2252 6.156949 ACATCTGTGTGGAAATCTAGTGGTAT 59.843 38.462 0.00 0.00 37.14 2.73
2187 2253 7.344612 ACATCTGTGTGGAAATCTAGTGGTATA 59.655 37.037 0.00 0.00 37.14 1.47
2188 2254 7.108841 TCTGTGTGGAAATCTAGTGGTATAC 57.891 40.000 0.00 0.00 0.00 1.47
2189 2255 6.895756 TCTGTGTGGAAATCTAGTGGTATACT 59.104 38.462 2.25 0.00 43.56 2.12
2190 2256 7.399191 TCTGTGTGGAAATCTAGTGGTATACTT 59.601 37.037 2.25 0.00 40.89 2.24
2191 2257 7.913789 TGTGTGGAAATCTAGTGGTATACTTT 58.086 34.615 2.25 0.00 40.89 2.66
2192 2258 8.380099 TGTGTGGAAATCTAGTGGTATACTTTT 58.620 33.333 2.25 0.00 40.89 2.27
2193 2259 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
2194 2260 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
2195 2261 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
2242 2308 4.614555 CATTCCGTGGAATTCGAATCAA 57.385 40.909 11.83 0.00 42.30 2.57
2243 2309 4.980590 CATTCCGTGGAATTCGAATCAAA 58.019 39.130 11.83 0.00 42.30 2.69
2244 2310 4.413495 TTCCGTGGAATTCGAATCAAAC 57.587 40.909 11.83 8.77 0.00 2.93
2245 2311 2.745281 TCCGTGGAATTCGAATCAAACC 59.255 45.455 11.83 12.67 0.00 3.27
2246 2312 2.486203 CCGTGGAATTCGAATCAAACCA 59.514 45.455 11.83 14.90 0.00 3.67
2247 2313 3.057876 CCGTGGAATTCGAATCAAACCAA 60.058 43.478 11.83 2.49 0.00 3.67
2248 2314 4.541779 CGTGGAATTCGAATCAAACCAAA 58.458 39.130 11.83 0.00 0.00 3.28
2249 2315 5.160641 CGTGGAATTCGAATCAAACCAAAT 58.839 37.500 11.83 0.00 0.00 2.32
2250 2316 5.286082 CGTGGAATTCGAATCAAACCAAATC 59.714 40.000 11.83 1.65 0.00 2.17
2251 2317 6.155827 GTGGAATTCGAATCAAACCAAATCA 58.844 36.000 11.83 0.00 0.00 2.57
2252 2318 6.644592 GTGGAATTCGAATCAAACCAAATCAA 59.355 34.615 11.83 0.00 0.00 2.57
2253 2319 7.170658 GTGGAATTCGAATCAAACCAAATCAAA 59.829 33.333 11.83 0.00 0.00 2.69
2254 2320 7.877097 TGGAATTCGAATCAAACCAAATCAAAT 59.123 29.630 11.83 0.00 0.00 2.32
2255 2321 8.382875 GGAATTCGAATCAAACCAAATCAAATC 58.617 33.333 11.83 0.00 0.00 2.17
2256 2322 7.832503 ATTCGAATCAAACCAAATCAAATCC 57.167 32.000 4.39 0.00 0.00 3.01
2257 2323 6.338214 TCGAATCAAACCAAATCAAATCCA 57.662 33.333 0.00 0.00 0.00 3.41
2258 2324 6.389091 TCGAATCAAACCAAATCAAATCCAG 58.611 36.000 0.00 0.00 0.00 3.86
2259 2325 5.062558 CGAATCAAACCAAATCAAATCCAGC 59.937 40.000 0.00 0.00 0.00 4.85
2260 2326 4.270245 TCAAACCAAATCAAATCCAGCC 57.730 40.909 0.00 0.00 0.00 4.85
2261 2327 3.007831 TCAAACCAAATCAAATCCAGCCC 59.992 43.478 0.00 0.00 0.00 5.19
2262 2328 1.571955 ACCAAATCAAATCCAGCCCC 58.428 50.000 0.00 0.00 0.00 5.80
2263 2329 0.832626 CCAAATCAAATCCAGCCCCC 59.167 55.000 0.00 0.00 0.00 5.40
2264 2330 1.570803 CAAATCAAATCCAGCCCCCA 58.429 50.000 0.00 0.00 0.00 4.96
2265 2331 2.121129 CAAATCAAATCCAGCCCCCAT 58.879 47.619 0.00 0.00 0.00 4.00
2266 2332 1.797320 AATCAAATCCAGCCCCCATG 58.203 50.000 0.00 0.00 0.00 3.66
2267 2333 0.935942 ATCAAATCCAGCCCCCATGA 59.064 50.000 0.00 0.00 0.00 3.07
2268 2334 0.709397 TCAAATCCAGCCCCCATGAA 59.291 50.000 0.00 0.00 0.00 2.57
2269 2335 1.078490 TCAAATCCAGCCCCCATGAAA 59.922 47.619 0.00 0.00 0.00 2.69
2270 2336 1.907936 CAAATCCAGCCCCCATGAAAA 59.092 47.619 0.00 0.00 0.00 2.29
2271 2337 2.506644 CAAATCCAGCCCCCATGAAAAT 59.493 45.455 0.00 0.00 0.00 1.82
2272 2338 2.092598 ATCCAGCCCCCATGAAAATC 57.907 50.000 0.00 0.00 0.00 2.17
2273 2339 0.032217 TCCAGCCCCCATGAAAATCC 60.032 55.000 0.00 0.00 0.00 3.01
2274 2340 1.050421 CCAGCCCCCATGAAAATCCC 61.050 60.000 0.00 0.00 0.00 3.85
2275 2341 1.050421 CAGCCCCCATGAAAATCCCC 61.050 60.000 0.00 0.00 0.00 4.81
2276 2342 1.766059 GCCCCCATGAAAATCCCCC 60.766 63.158 0.00 0.00 0.00 5.40
2277 2343 1.709082 CCCCCATGAAAATCCCCCA 59.291 57.895 0.00 0.00 0.00 4.96
2278 2344 0.398948 CCCCCATGAAAATCCCCCAG 60.399 60.000 0.00 0.00 0.00 4.45
2279 2345 0.398948 CCCCATGAAAATCCCCCAGG 60.399 60.000 0.00 0.00 0.00 4.45
2280 2346 0.398948 CCCATGAAAATCCCCCAGGG 60.399 60.000 0.00 0.00 46.11 4.45
2294 2360 4.838152 AGGGATCGCGCGTGCATT 62.838 61.111 30.98 11.31 42.97 3.56
2295 2361 4.299316 GGGATCGCGCGTGCATTC 62.299 66.667 30.98 14.88 42.97 2.67
2296 2362 3.563088 GGATCGCGCGTGCATTCA 61.563 61.111 30.98 8.92 42.97 2.57
2297 2363 2.350091 GATCGCGCGTGCATTCAC 60.350 61.111 30.98 9.28 42.97 3.18
2298 2364 2.802667 GATCGCGCGTGCATTCACT 61.803 57.895 30.98 4.10 42.97 3.41
2299 2365 2.671345 GATCGCGCGTGCATTCACTC 62.671 60.000 30.98 9.54 42.97 3.51
2300 2366 4.505217 CGCGCGTGCATTCACTCC 62.505 66.667 24.19 0.00 42.97 3.85
2301 2367 4.166011 GCGCGTGCATTCACTCCC 62.166 66.667 17.66 0.00 40.99 4.30
2302 2368 3.853330 CGCGTGCATTCACTCCCG 61.853 66.667 0.00 0.00 40.99 5.14
2303 2369 4.166011 GCGTGCATTCACTCCCGC 62.166 66.667 0.00 0.00 40.99 6.13
2304 2370 2.741985 CGTGCATTCACTCCCGCA 60.742 61.111 0.00 0.00 40.99 5.69
2305 2371 2.324330 CGTGCATTCACTCCCGCAA 61.324 57.895 0.00 0.00 40.99 4.85
2306 2372 1.503542 GTGCATTCACTCCCGCAAG 59.496 57.895 0.00 0.00 40.03 4.01
2320 2386 2.904011 CGCAAGGCCGTAATAAACAA 57.096 45.000 0.00 0.00 0.00 2.83
2321 2387 2.780993 CGCAAGGCCGTAATAAACAAG 58.219 47.619 0.00 0.00 0.00 3.16
2322 2388 2.417239 CGCAAGGCCGTAATAAACAAGA 59.583 45.455 0.00 0.00 0.00 3.02
2323 2389 3.485216 CGCAAGGCCGTAATAAACAAGAG 60.485 47.826 0.00 0.00 0.00 2.85
2324 2390 3.181500 GCAAGGCCGTAATAAACAAGAGG 60.181 47.826 0.00 0.00 0.00 3.69
2325 2391 2.640184 AGGCCGTAATAAACAAGAGGC 58.360 47.619 0.00 0.00 42.10 4.70
2327 2393 1.329599 GCCGTAATAAACAAGAGGCCG 59.670 52.381 0.00 0.00 37.32 6.13
2328 2394 1.329599 CCGTAATAAACAAGAGGCCGC 59.670 52.381 0.00 0.00 0.00 6.53
2329 2395 1.005347 CGTAATAAACAAGAGGCCGCG 60.005 52.381 0.00 0.00 0.00 6.46
2330 2396 2.004733 GTAATAAACAAGAGGCCGCGT 58.995 47.619 4.92 0.00 0.00 6.01
2331 2397 2.389962 AATAAACAAGAGGCCGCGTA 57.610 45.000 4.92 0.00 0.00 4.42
2332 2398 2.389962 ATAAACAAGAGGCCGCGTAA 57.610 45.000 4.92 0.00 0.00 3.18
2333 2399 2.166821 TAAACAAGAGGCCGCGTAAA 57.833 45.000 4.92 0.00 0.00 2.01
2334 2400 0.589708 AAACAAGAGGCCGCGTAAAC 59.410 50.000 4.92 0.00 0.00 2.01
2335 2401 1.232621 AACAAGAGGCCGCGTAAACC 61.233 55.000 4.92 0.29 0.00 3.27
2336 2402 1.669760 CAAGAGGCCGCGTAAACCA 60.670 57.895 4.92 0.00 0.00 3.67
2337 2403 1.670083 AAGAGGCCGCGTAAACCAC 60.670 57.895 4.92 0.00 0.00 4.16
2347 2413 3.287482 GTAAACCACGGGTCGTCAA 57.713 52.632 0.00 0.00 38.32 3.18
2348 2414 1.142474 GTAAACCACGGGTCGTCAAG 58.858 55.000 0.00 0.00 38.32 3.02
2349 2415 0.600782 TAAACCACGGGTCGTCAAGC 60.601 55.000 0.00 0.00 38.32 4.01
2350 2416 4.657824 ACCACGGGTCGTCAAGCG 62.658 66.667 0.00 0.00 38.32 4.68
2394 2460 2.717580 GGGACGACATTTTCAAACCC 57.282 50.000 0.00 0.00 0.00 4.11
2395 2461 1.068816 GGGACGACATTTTCAAACCCG 60.069 52.381 0.00 0.00 0.00 5.28
2396 2462 1.664874 GGACGACATTTTCAAACCCGC 60.665 52.381 0.00 0.00 0.00 6.13
2397 2463 1.265905 GACGACATTTTCAAACCCGCT 59.734 47.619 0.00 0.00 0.00 5.52
2398 2464 1.265905 ACGACATTTTCAAACCCGCTC 59.734 47.619 0.00 0.00 0.00 5.03
2399 2465 1.724654 CGACATTTTCAAACCCGCTCG 60.725 52.381 0.00 0.00 0.00 5.03
2400 2466 0.039527 ACATTTTCAAACCCGCTCGC 60.040 50.000 0.00 0.00 0.00 5.03
2401 2467 0.240945 CATTTTCAAACCCGCTCGCT 59.759 50.000 0.00 0.00 0.00 4.93
2402 2468 0.521735 ATTTTCAAACCCGCTCGCTC 59.478 50.000 0.00 0.00 0.00 5.03
2403 2469 1.837538 TTTTCAAACCCGCTCGCTCG 61.838 55.000 0.00 0.00 0.00 5.03
2413 2479 4.615834 CTCGCTCGCTCGCTACCC 62.616 72.222 0.00 0.00 0.00 3.69
2415 2481 4.194720 CGCTCGCTCGCTACCCTT 62.195 66.667 0.00 0.00 0.00 3.95
2416 2482 2.184579 GCTCGCTCGCTACCCTTT 59.815 61.111 0.00 0.00 0.00 3.11
2417 2483 1.448013 GCTCGCTCGCTACCCTTTT 60.448 57.895 0.00 0.00 0.00 2.27
2418 2484 1.422179 GCTCGCTCGCTACCCTTTTC 61.422 60.000 0.00 0.00 0.00 2.29
2419 2485 0.806492 CTCGCTCGCTACCCTTTTCC 60.806 60.000 0.00 0.00 0.00 3.13
2420 2486 1.814169 CGCTCGCTACCCTTTTCCC 60.814 63.158 0.00 0.00 0.00 3.97
2421 2487 1.451567 GCTCGCTACCCTTTTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
2422 2488 1.911702 GCTCGCTACCCTTTTCCCCT 61.912 60.000 0.00 0.00 0.00 4.79
2423 2489 0.618981 CTCGCTACCCTTTTCCCCTT 59.381 55.000 0.00 0.00 0.00 3.95
2424 2490 0.326927 TCGCTACCCTTTTCCCCTTG 59.673 55.000 0.00 0.00 0.00 3.61
2425 2491 0.679960 CGCTACCCTTTTCCCCTTGG 60.680 60.000 0.00 0.00 0.00 3.61
2426 2492 0.324368 GCTACCCTTTTCCCCTTGGG 60.324 60.000 0.00 0.00 46.11 4.12
2427 2493 0.324368 CTACCCTTTTCCCCTTGGGC 60.324 60.000 0.00 0.00 43.94 5.36
2428 2494 2.144859 TACCCTTTTCCCCTTGGGCG 62.145 60.000 0.00 0.00 43.94 6.13
2429 2495 2.117423 CCTTTTCCCCTTGGGCGT 59.883 61.111 0.00 0.00 43.94 5.68
2430 2496 1.977009 CCTTTTCCCCTTGGGCGTC 60.977 63.158 0.00 0.00 43.94 5.19
2431 2497 1.977009 CTTTTCCCCTTGGGCGTCC 60.977 63.158 0.00 0.00 43.94 4.79
2432 2498 2.706952 CTTTTCCCCTTGGGCGTCCA 62.707 60.000 3.51 3.51 43.94 4.02
2433 2499 2.987355 TTTTCCCCTTGGGCGTCCAC 62.987 60.000 9.15 0.00 43.94 4.02
2455 2521 4.338710 GGCCGGTTGGTGCACCTA 62.339 66.667 34.75 26.28 37.67 3.08
2456 2522 2.746277 GCCGGTTGGTGCACCTAG 60.746 66.667 34.75 21.87 37.67 3.02
2457 2523 2.746277 CCGGTTGGTGCACCTAGC 60.746 66.667 34.75 32.92 45.96 3.42
2477 2543 4.459331 GCGGCAGCGCGAAAATGA 62.459 61.111 12.10 0.00 0.00 2.57
2478 2544 2.574212 CGGCAGCGCGAAAATGAC 60.574 61.111 12.10 3.15 0.00 3.06
2479 2545 2.202479 GGCAGCGCGAAAATGACC 60.202 61.111 12.10 4.69 0.00 4.02
2480 2546 2.202479 GCAGCGCGAAAATGACCC 60.202 61.111 12.10 0.00 0.00 4.46
2481 2547 2.690778 GCAGCGCGAAAATGACCCT 61.691 57.895 12.10 0.00 0.00 4.34
2482 2548 1.425428 CAGCGCGAAAATGACCCTC 59.575 57.895 12.10 0.00 0.00 4.30
2483 2549 1.021390 CAGCGCGAAAATGACCCTCT 61.021 55.000 12.10 0.00 0.00 3.69
2484 2550 0.321653 AGCGCGAAAATGACCCTCTT 60.322 50.000 12.10 0.00 0.00 2.85
2485 2551 1.066430 AGCGCGAAAATGACCCTCTTA 60.066 47.619 12.10 0.00 0.00 2.10
2486 2552 1.062148 GCGCGAAAATGACCCTCTTAC 59.938 52.381 12.10 0.00 0.00 2.34
2487 2553 1.664151 CGCGAAAATGACCCTCTTACC 59.336 52.381 0.00 0.00 0.00 2.85
2488 2554 2.014857 GCGAAAATGACCCTCTTACCC 58.985 52.381 0.00 0.00 0.00 3.69
2489 2555 2.640184 CGAAAATGACCCTCTTACCCC 58.360 52.381 0.00 0.00 0.00 4.95
2490 2556 2.682858 CGAAAATGACCCTCTTACCCCC 60.683 54.545 0.00 0.00 0.00 5.40
2491 2557 0.916809 AAATGACCCTCTTACCCCCG 59.083 55.000 0.00 0.00 0.00 5.73
2492 2558 0.986550 AATGACCCTCTTACCCCCGG 60.987 60.000 0.00 0.00 0.00 5.73
2493 2559 3.477346 GACCCTCTTACCCCCGGC 61.477 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.338620 CGACCGGTCAAGCACTGA 59.661 61.111 32.80 0.00 32.23 3.41
1 2 2.507110 ATCCGACCGGTCAAGCACTG 62.507 60.000 32.80 15.18 36.47 3.66
2 3 2.227089 GATCCGACCGGTCAAGCACT 62.227 60.000 32.80 11.64 36.47 4.40
3 4 1.810030 GATCCGACCGGTCAAGCAC 60.810 63.158 32.80 16.08 36.47 4.40
4 5 2.577059 GATCCGACCGGTCAAGCA 59.423 61.111 32.80 14.18 36.47 3.91
5 6 2.582498 CGATCCGACCGGTCAAGC 60.582 66.667 32.80 21.52 36.47 4.01
6 7 1.516386 CACGATCCGACCGGTCAAG 60.516 63.158 32.80 23.24 36.47 3.02
7 8 1.525718 TTCACGATCCGACCGGTCAA 61.526 55.000 32.80 21.01 36.47 3.18
8 9 1.929806 CTTCACGATCCGACCGGTCA 61.930 60.000 32.80 16.29 36.47 4.02
9 10 1.226603 CTTCACGATCCGACCGGTC 60.227 63.158 25.28 25.28 36.47 4.79
10 11 1.676635 TCTTCACGATCCGACCGGT 60.677 57.895 6.92 6.92 36.47 5.28
11 12 1.226603 GTCTTCACGATCCGACCGG 60.227 63.158 0.00 0.00 0.00 5.28
12 13 4.379221 GTCTTCACGATCCGACCG 57.621 61.111 0.00 0.00 0.00 4.79
22 23 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
23 24 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
24 25 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
25 26 3.503363 TGGTTGATGTAGTCGTACGTCTT 59.497 43.478 19.61 2.66 43.23 3.01
26 27 3.076621 TGGTTGATGTAGTCGTACGTCT 58.923 45.455 18.54 18.54 43.23 4.18
27 28 3.476295 TGGTTGATGTAGTCGTACGTC 57.524 47.619 16.05 10.06 43.16 4.34
28 29 3.921119 TTGGTTGATGTAGTCGTACGT 57.079 42.857 16.05 0.00 30.95 3.57
29 30 3.982701 TGTTTGGTTGATGTAGTCGTACG 59.017 43.478 9.53 9.53 30.95 3.67
30 31 4.986659 AGTGTTTGGTTGATGTAGTCGTAC 59.013 41.667 0.00 0.00 0.00 3.67
31 32 5.204409 AGTGTTTGGTTGATGTAGTCGTA 57.796 39.130 0.00 0.00 0.00 3.43
32 33 4.067972 AGTGTTTGGTTGATGTAGTCGT 57.932 40.909 0.00 0.00 0.00 4.34
33 34 4.084013 GGAAGTGTTTGGTTGATGTAGTCG 60.084 45.833 0.00 0.00 0.00 4.18
34 35 4.084013 CGGAAGTGTTTGGTTGATGTAGTC 60.084 45.833 0.00 0.00 0.00 2.59
35 36 3.813166 CGGAAGTGTTTGGTTGATGTAGT 59.187 43.478 0.00 0.00 0.00 2.73
36 37 3.813166 ACGGAAGTGTTTGGTTGATGTAG 59.187 43.478 0.00 0.00 46.97 2.74
37 38 3.811083 ACGGAAGTGTTTGGTTGATGTA 58.189 40.909 0.00 0.00 46.97 2.29
38 39 2.650322 ACGGAAGTGTTTGGTTGATGT 58.350 42.857 0.00 0.00 46.97 3.06
52 53 3.626670 ACCTAGTAGATCGACAACGGAAG 59.373 47.826 8.75 0.00 40.21 3.46
53 54 3.614092 ACCTAGTAGATCGACAACGGAA 58.386 45.455 8.75 0.00 40.21 4.30
54 55 3.272574 ACCTAGTAGATCGACAACGGA 57.727 47.619 8.75 0.00 40.21 4.69
55 56 4.514441 ACATACCTAGTAGATCGACAACGG 59.486 45.833 8.75 7.52 40.21 4.44
56 57 5.670149 ACATACCTAGTAGATCGACAACG 57.330 43.478 8.75 0.00 41.26 4.10
57 58 7.959689 TCTACATACCTAGTAGATCGACAAC 57.040 40.000 8.75 0.00 42.09 3.32
66 67 6.655848 GGGAGTGTGATCTACATACCTAGTAG 59.344 46.154 15.45 0.00 42.24 2.57
67 68 6.466904 GGGGAGTGTGATCTACATACCTAGTA 60.467 46.154 15.45 0.00 42.24 1.82
68 69 5.386924 GGGAGTGTGATCTACATACCTAGT 58.613 45.833 15.45 0.00 42.24 2.57
69 70 4.767928 GGGGAGTGTGATCTACATACCTAG 59.232 50.000 15.45 0.00 42.24 3.02
70 71 4.448787 GGGGGAGTGTGATCTACATACCTA 60.449 50.000 15.45 0.00 42.24 3.08
71 72 3.577919 GGGGAGTGTGATCTACATACCT 58.422 50.000 15.45 5.71 42.24 3.08
72 73 2.633481 GGGGGAGTGTGATCTACATACC 59.367 54.545 0.00 5.10 42.24 2.73
90 91 1.691976 TGATGTATAGCAACGAGGGGG 59.308 52.381 0.00 0.00 0.00 5.40
91 92 2.548067 GGTGATGTATAGCAACGAGGGG 60.548 54.545 0.00 0.00 0.00 4.79
92 93 2.102420 TGGTGATGTATAGCAACGAGGG 59.898 50.000 0.00 0.00 30.94 4.30
93 94 3.452755 TGGTGATGTATAGCAACGAGG 57.547 47.619 0.00 0.00 30.94 4.63
94 95 4.620982 TCATGGTGATGTATAGCAACGAG 58.379 43.478 0.00 0.00 30.94 4.18
95 96 4.664150 TCATGGTGATGTATAGCAACGA 57.336 40.909 0.00 0.00 30.94 3.85
96 97 5.233225 AGATCATGGTGATGTATAGCAACG 58.767 41.667 0.00 0.00 37.20 4.10
97 98 6.567321 GCAAGATCATGGTGATGTATAGCAAC 60.567 42.308 0.00 0.00 37.20 4.17
98 99 5.471116 GCAAGATCATGGTGATGTATAGCAA 59.529 40.000 0.00 0.00 37.20 3.91
99 100 4.999311 GCAAGATCATGGTGATGTATAGCA 59.001 41.667 0.00 0.00 37.20 3.49
100 101 4.999311 TGCAAGATCATGGTGATGTATAGC 59.001 41.667 0.00 0.85 37.20 2.97
101 102 6.653740 ACATGCAAGATCATGGTGATGTATAG 59.346 38.462 0.00 0.00 46.02 1.31
102 103 6.428771 CACATGCAAGATCATGGTGATGTATA 59.571 38.462 0.00 0.00 46.02 1.47
103 104 5.240844 CACATGCAAGATCATGGTGATGTAT 59.759 40.000 0.00 0.00 46.02 2.29
104 105 4.577283 CACATGCAAGATCATGGTGATGTA 59.423 41.667 0.00 0.00 46.02 2.29
105 106 3.380320 CACATGCAAGATCATGGTGATGT 59.620 43.478 0.00 0.00 46.02 3.06
106 107 3.795488 GCACATGCAAGATCATGGTGATG 60.795 47.826 9.18 0.66 46.02 3.07
107 108 2.361119 GCACATGCAAGATCATGGTGAT 59.639 45.455 9.18 0.00 46.02 3.06
108 109 1.746787 GCACATGCAAGATCATGGTGA 59.253 47.619 9.18 0.00 46.02 4.02
109 110 1.533129 CGCACATGCAAGATCATGGTG 60.533 52.381 4.49 1.26 46.02 4.17
110 111 0.736636 CGCACATGCAAGATCATGGT 59.263 50.000 4.49 0.00 46.02 3.55
111 112 0.736636 ACGCACATGCAAGATCATGG 59.263 50.000 4.49 0.00 46.02 3.66
112 113 3.249080 TCATACGCACATGCAAGATCATG 59.751 43.478 4.49 0.00 46.86 3.07
113 114 3.469739 TCATACGCACATGCAAGATCAT 58.530 40.909 4.49 0.00 42.21 2.45
114 115 2.903798 TCATACGCACATGCAAGATCA 58.096 42.857 4.49 0.00 42.21 2.92
115 116 3.950087 TTCATACGCACATGCAAGATC 57.050 42.857 4.49 0.00 42.21 2.75
116 117 4.906065 AATTCATACGCACATGCAAGAT 57.094 36.364 4.49 0.00 42.21 2.40
117 118 4.700268 AAATTCATACGCACATGCAAGA 57.300 36.364 4.49 0.00 42.21 3.02
118 119 5.766702 AAAAATTCATACGCACATGCAAG 57.233 34.783 4.49 0.00 42.21 4.01
138 139 8.248945 TGTTGGGTTTCGTAGTAATTTCAAAAA 58.751 29.630 0.00 0.00 0.00 1.94
139 140 7.769220 TGTTGGGTTTCGTAGTAATTTCAAAA 58.231 30.769 0.00 0.00 0.00 2.44
140 141 7.282675 TCTGTTGGGTTTCGTAGTAATTTCAAA 59.717 33.333 0.00 0.00 0.00 2.69
141 142 6.766944 TCTGTTGGGTTTCGTAGTAATTTCAA 59.233 34.615 0.00 0.00 0.00 2.69
142 143 6.289834 TCTGTTGGGTTTCGTAGTAATTTCA 58.710 36.000 0.00 0.00 0.00 2.69
143 144 6.790285 TCTGTTGGGTTTCGTAGTAATTTC 57.210 37.500 0.00 0.00 0.00 2.17
144 145 6.206048 CCTTCTGTTGGGTTTCGTAGTAATTT 59.794 38.462 0.00 0.00 0.00 1.82
145 146 5.704053 CCTTCTGTTGGGTTTCGTAGTAATT 59.296 40.000 0.00 0.00 0.00 1.40
146 147 5.243207 CCTTCTGTTGGGTTTCGTAGTAAT 58.757 41.667 0.00 0.00 0.00 1.89
147 148 4.503643 CCCTTCTGTTGGGTTTCGTAGTAA 60.504 45.833 0.00 0.00 39.82 2.24
148 149 3.007182 CCCTTCTGTTGGGTTTCGTAGTA 59.993 47.826 0.00 0.00 39.82 1.82
149 150 2.224450 CCCTTCTGTTGGGTTTCGTAGT 60.224 50.000 0.00 0.00 39.82 2.73
150 151 2.423577 CCCTTCTGTTGGGTTTCGTAG 58.576 52.381 0.00 0.00 39.82 3.51
151 152 1.072648 CCCCTTCTGTTGGGTTTCGTA 59.927 52.381 0.00 0.00 43.09 3.43
152 153 0.179001 CCCCTTCTGTTGGGTTTCGT 60.179 55.000 0.00 0.00 43.09 3.85
153 154 0.893727 CCCCCTTCTGTTGGGTTTCG 60.894 60.000 0.00 0.00 43.09 3.46
154 155 3.051617 CCCCCTTCTGTTGGGTTTC 57.948 57.895 0.00 0.00 43.09 2.78
158 159 2.771688 TCTATACCCCCTTCTGTTGGG 58.228 52.381 0.00 0.00 45.34 4.12
159 160 3.431766 CGTTCTATACCCCCTTCTGTTGG 60.432 52.174 0.00 0.00 0.00 3.77
160 161 3.431766 CCGTTCTATACCCCCTTCTGTTG 60.432 52.174 0.00 0.00 0.00 3.33
161 162 2.770232 CCGTTCTATACCCCCTTCTGTT 59.230 50.000 0.00 0.00 0.00 3.16
162 163 2.023695 TCCGTTCTATACCCCCTTCTGT 60.024 50.000 0.00 0.00 0.00 3.41
163 164 2.364647 GTCCGTTCTATACCCCCTTCTG 59.635 54.545 0.00 0.00 0.00 3.02
164 165 2.023695 TGTCCGTTCTATACCCCCTTCT 60.024 50.000 0.00 0.00 0.00 2.85
165 166 2.102084 GTGTCCGTTCTATACCCCCTTC 59.898 54.545 0.00 0.00 0.00 3.46
318 322 0.106819 GAGCCAGTCCGTCCTACCTA 60.107 60.000 0.00 0.00 0.00 3.08
428 432 2.103538 CGCCGTGCCGTAGTGTAT 59.896 61.111 0.00 0.00 0.00 2.29
489 493 2.564062 TCTCCGACGACCCTAAACAAAT 59.436 45.455 0.00 0.00 0.00 2.32
491 495 1.270550 GTCTCCGACGACCCTAAACAA 59.729 52.381 0.00 0.00 0.00 2.83
557 561 2.571653 TCTGATTCCTGACCCAACGAAT 59.428 45.455 0.00 0.00 0.00 3.34
562 566 2.907892 AGACTCTGATTCCTGACCCAA 58.092 47.619 0.00 0.00 0.00 4.12
578 582 4.562552 GCCACTAAAGAAGAGCTGAAGACT 60.563 45.833 0.00 0.00 0.00 3.24
640 644 0.449388 CTCGAACTTTGGCTCCATGC 59.551 55.000 0.00 0.00 41.94 4.06
755 759 1.580815 GCTCTAGCTCCAGCATCAAC 58.419 55.000 11.17 0.00 45.16 3.18
793 797 1.982660 TCTCTCACTGTCAACCGTCT 58.017 50.000 0.00 0.00 0.00 4.18
796 800 2.554462 TCTCTTCTCTCACTGTCAACCG 59.446 50.000 0.00 0.00 0.00 4.44
892 898 3.302870 TCAAGAGCTTGTCGTTAAAACGC 60.303 43.478 10.29 6.56 43.96 4.84
902 908 4.637534 TCATGGCTAATTCAAGAGCTTGTC 59.362 41.667 9.79 0.00 41.16 3.18
962 968 1.139734 CACCTCCGTGTCCTCGATG 59.860 63.158 0.00 0.00 35.10 3.84
1074 1095 3.371063 GTCGTCGCCACCCTCAGA 61.371 66.667 0.00 0.00 0.00 3.27
1113 1137 4.627447 TTGCGCCGCTTGTTGCTG 62.627 61.111 11.67 0.00 40.11 4.41
1125 1149 2.125832 TAGTGGCCGTAGTTGCGC 60.126 61.111 0.00 0.00 0.00 6.09
1194 1218 1.389609 GCATGGGGATGCACTCAAGG 61.390 60.000 2.14 0.00 46.25 3.61
1247 1271 0.318441 CCTGAGCTTGAACTCCGTCA 59.682 55.000 0.00 0.00 35.72 4.35
1373 1399 4.563580 GGAGCTTGAAAGTCACCATGTAGA 60.564 45.833 0.00 0.00 0.00 2.59
1479 1505 1.079405 CTACTCCTTGGCGGCGAAA 60.079 57.895 12.98 2.67 0.00 3.46
1515 1541 4.734917 AGCATAATTCGATAGTACGCTCC 58.265 43.478 0.00 0.00 37.40 4.70
1560 1592 4.665833 AGCAGTACCGCAGATATAACAA 57.334 40.909 3.48 0.00 0.00 2.83
1572 1604 7.761704 AGCATAATTCAGATATAAGCAGTACCG 59.238 37.037 0.00 0.00 0.00 4.02
1699 1731 4.141846 ACATGGTGTTTGGTTGTATGCAAA 60.142 37.500 0.00 0.00 36.22 3.68
1722 1754 3.935818 TGTTAGTCCACAAACCCAAGA 57.064 42.857 0.00 0.00 0.00 3.02
1774 1809 1.340017 CCTTTTACCTGCAGGCAGCTA 60.340 52.381 33.06 14.74 45.94 3.32
1778 1813 1.606313 GCCCTTTTACCTGCAGGCA 60.606 57.895 33.06 18.72 40.20 4.75
1779 1814 0.972471 ATGCCCTTTTACCTGCAGGC 60.972 55.000 33.06 17.40 40.87 4.85
1780 1815 0.819582 CATGCCCTTTTACCTGCAGG 59.180 55.000 31.60 31.60 37.12 4.85
1781 1816 0.174162 GCATGCCCTTTTACCTGCAG 59.826 55.000 6.36 6.78 37.12 4.41
1791 1857 2.999063 GGTTGCCTGCATGCCCTT 60.999 61.111 16.68 0.00 0.00 3.95
1851 1917 5.577835 CATACACTTCTCTACTCAGTCTGC 58.422 45.833 0.00 0.00 0.00 4.26
1907 1973 1.117142 GGTAGGGCAGTATGGGCGTA 61.117 60.000 0.00 0.00 35.86 4.42
1920 1986 1.152881 GCAGATGGCCAAGGTAGGG 60.153 63.158 10.96 0.00 36.11 3.53
1921 1987 1.524621 CGCAGATGGCCAAGGTAGG 60.525 63.158 10.96 0.00 40.31 3.18
1922 1988 1.091771 CACGCAGATGGCCAAGGTAG 61.092 60.000 10.96 4.20 40.31 3.18
1923 1989 1.078497 CACGCAGATGGCCAAGGTA 60.078 57.895 10.96 0.00 40.31 3.08
1924 1990 2.360350 CACGCAGATGGCCAAGGT 60.360 61.111 10.96 0.00 40.31 3.50
1925 1991 3.818787 GCACGCAGATGGCCAAGG 61.819 66.667 10.96 2.88 40.31 3.61
1926 1992 2.338015 AAGCACGCAGATGGCCAAG 61.338 57.895 10.96 3.79 40.31 3.61
1927 1993 2.282391 AAGCACGCAGATGGCCAA 60.282 55.556 10.96 0.00 40.31 4.52
1928 1994 3.057548 CAAGCACGCAGATGGCCA 61.058 61.111 8.56 8.56 40.31 5.36
1929 1995 3.818787 CCAAGCACGCAGATGGCC 61.819 66.667 0.00 0.00 40.31 5.36
1930 1996 2.747460 TCCAAGCACGCAGATGGC 60.747 61.111 4.25 0.00 39.90 4.40
1931 1997 2.110967 CCTCCAAGCACGCAGATGG 61.111 63.158 0.00 0.00 0.00 3.51
1932 1998 0.674581 TTCCTCCAAGCACGCAGATG 60.675 55.000 0.00 0.00 0.00 2.90
1933 1999 0.036732 TTTCCTCCAAGCACGCAGAT 59.963 50.000 0.00 0.00 0.00 2.90
1934 2000 0.884704 GTTTCCTCCAAGCACGCAGA 60.885 55.000 0.00 0.00 0.00 4.26
1935 2001 1.165907 TGTTTCCTCCAAGCACGCAG 61.166 55.000 0.00 0.00 0.00 5.18
1936 2002 1.153066 TGTTTCCTCCAAGCACGCA 60.153 52.632 0.00 0.00 0.00 5.24
1937 2003 1.282875 GTGTTTCCTCCAAGCACGC 59.717 57.895 0.00 0.00 36.59 5.34
1938 2004 0.307760 GTGTGTTTCCTCCAAGCACG 59.692 55.000 0.00 0.00 46.49 5.34
1939 2005 1.388547 TGTGTGTTTCCTCCAAGCAC 58.611 50.000 0.00 0.00 44.41 4.40
1940 2006 1.955778 CATGTGTGTTTCCTCCAAGCA 59.044 47.619 0.00 0.00 0.00 3.91
1941 2007 1.270550 CCATGTGTGTTTCCTCCAAGC 59.729 52.381 0.00 0.00 0.00 4.01
1942 2008 1.270550 GCCATGTGTGTTTCCTCCAAG 59.729 52.381 0.00 0.00 0.00 3.61
1943 2009 1.327303 GCCATGTGTGTTTCCTCCAA 58.673 50.000 0.00 0.00 0.00 3.53
1944 2010 0.184692 TGCCATGTGTGTTTCCTCCA 59.815 50.000 0.00 0.00 0.00 3.86
1945 2011 1.270550 CTTGCCATGTGTGTTTCCTCC 59.729 52.381 0.00 0.00 0.00 4.30
1946 2012 1.336240 GCTTGCCATGTGTGTTTCCTC 60.336 52.381 0.00 0.00 0.00 3.71
1947 2013 0.675633 GCTTGCCATGTGTGTTTCCT 59.324 50.000 0.00 0.00 0.00 3.36
1948 2014 0.388659 TGCTTGCCATGTGTGTTTCC 59.611 50.000 0.00 0.00 0.00 3.13
1949 2015 2.063266 CATGCTTGCCATGTGTGTTTC 58.937 47.619 0.00 0.00 45.05 2.78
1950 2016 2.157834 CATGCTTGCCATGTGTGTTT 57.842 45.000 0.00 0.00 45.05 2.83
1951 2017 3.898380 CATGCTTGCCATGTGTGTT 57.102 47.368 0.00 0.00 45.05 3.32
1958 2024 1.520192 CATGCACCATGCTTGCCAT 59.480 52.632 13.33 6.07 45.31 4.40
1959 2025 2.974717 CATGCACCATGCTTGCCA 59.025 55.556 13.33 4.34 45.31 4.92
1966 2032 0.384309 GGAGATGTGCATGCACCATG 59.616 55.000 40.01 0.00 45.63 3.66
1967 2033 0.754217 GGGAGATGTGCATGCACCAT 60.754 55.000 40.01 32.18 45.63 3.55
1968 2034 1.378911 GGGAGATGTGCATGCACCA 60.379 57.895 40.01 29.61 45.63 4.17
1969 2035 1.378911 TGGGAGATGTGCATGCACC 60.379 57.895 40.01 28.35 45.63 5.01
1970 2036 0.393402 TCTGGGAGATGTGCATGCAC 60.393 55.000 38.00 38.00 46.33 4.57
1971 2037 0.328926 TTCTGGGAGATGTGCATGCA 59.671 50.000 18.46 18.46 0.00 3.96
1972 2038 1.022735 CTTCTGGGAGATGTGCATGC 58.977 55.000 11.82 11.82 0.00 4.06
1973 2039 2.286872 GTCTTCTGGGAGATGTGCATG 58.713 52.381 0.00 0.00 0.00 4.06
1974 2040 1.134580 CGTCTTCTGGGAGATGTGCAT 60.135 52.381 0.00 0.00 0.00 3.96
1975 2041 0.247460 CGTCTTCTGGGAGATGTGCA 59.753 55.000 0.00 0.00 0.00 4.57
1976 2042 1.086634 GCGTCTTCTGGGAGATGTGC 61.087 60.000 0.75 0.00 35.54 4.57
1977 2043 0.803768 CGCGTCTTCTGGGAGATGTG 60.804 60.000 0.00 0.00 36.98 3.21
1978 2044 1.251527 ACGCGTCTTCTGGGAGATGT 61.252 55.000 5.58 0.00 35.54 3.06
1979 2045 0.526524 GACGCGTCTTCTGGGAGATG 60.527 60.000 31.12 0.00 36.07 2.90
1980 2046 0.681564 AGACGCGTCTTCTGGGAGAT 60.682 55.000 34.98 10.31 36.31 2.75
1981 2047 0.035725 TAGACGCGTCTTCTGGGAGA 60.036 55.000 42.90 22.40 40.93 3.71
1982 2048 1.025812 ATAGACGCGTCTTCTGGGAG 58.974 55.000 42.90 0.00 40.93 4.30
1983 2049 0.738975 CATAGACGCGTCTTCTGGGA 59.261 55.000 42.90 26.39 40.93 4.37
1984 2050 0.456221 ACATAGACGCGTCTTCTGGG 59.544 55.000 42.90 28.23 40.93 4.45
1985 2051 2.541178 GGTACATAGACGCGTCTTCTGG 60.541 54.545 42.90 29.79 40.93 3.86
1986 2052 2.355132 AGGTACATAGACGCGTCTTCTG 59.645 50.000 42.90 36.76 40.93 3.02
1987 2053 2.641305 AGGTACATAGACGCGTCTTCT 58.359 47.619 42.90 28.49 40.93 2.85
1988 2054 3.417690 AAGGTACATAGACGCGTCTTC 57.582 47.619 42.90 26.29 40.93 2.87
1989 2055 3.863142 AAAGGTACATAGACGCGTCTT 57.137 42.857 42.90 28.87 40.93 3.01
1990 2056 4.970662 TTAAAGGTACATAGACGCGTCT 57.029 40.909 40.17 40.17 43.40 4.18
1991 2057 4.028187 CGTTTAAAGGTACATAGACGCGTC 60.028 45.833 31.30 31.30 0.00 5.19
1992 2058 3.853671 CGTTTAAAGGTACATAGACGCGT 59.146 43.478 13.85 13.85 0.00 6.01
1993 2059 3.241322 CCGTTTAAAGGTACATAGACGCG 59.759 47.826 3.53 3.53 32.33 6.01
1994 2060 4.266265 GTCCGTTTAAAGGTACATAGACGC 59.734 45.833 7.11 0.00 32.33 5.19
1995 2061 4.496895 CGTCCGTTTAAAGGTACATAGACG 59.503 45.833 15.43 15.43 37.62 4.18
1996 2062 4.800471 CCGTCCGTTTAAAGGTACATAGAC 59.200 45.833 7.11 5.27 0.00 2.59
1997 2063 4.704540 TCCGTCCGTTTAAAGGTACATAGA 59.295 41.667 7.11 0.00 0.00 1.98
1998 2064 4.997565 TCCGTCCGTTTAAAGGTACATAG 58.002 43.478 7.11 0.00 0.00 2.23
1999 2065 5.126869 TGATCCGTCCGTTTAAAGGTACATA 59.873 40.000 7.11 0.00 0.00 2.29
2000 2066 3.959535 TCCGTCCGTTTAAAGGTACAT 57.040 42.857 7.11 0.00 0.00 2.29
2001 2067 3.257873 TGATCCGTCCGTTTAAAGGTACA 59.742 43.478 7.11 0.00 0.00 2.90
2002 2068 3.848726 TGATCCGTCCGTTTAAAGGTAC 58.151 45.455 7.11 0.78 0.00 3.34
2003 2069 4.244862 GTTGATCCGTCCGTTTAAAGGTA 58.755 43.478 7.11 0.00 0.00 3.08
2004 2070 3.069289 GTTGATCCGTCCGTTTAAAGGT 58.931 45.455 7.11 0.00 0.00 3.50
2005 2071 2.417586 GGTTGATCCGTCCGTTTAAAGG 59.582 50.000 0.81 0.81 0.00 3.11
2006 2072 2.417586 GGGTTGATCCGTCCGTTTAAAG 59.582 50.000 0.00 0.00 37.00 1.85
2007 2073 2.224475 TGGGTTGATCCGTCCGTTTAAA 60.224 45.455 0.00 0.00 37.00 1.52
2008 2074 1.347050 TGGGTTGATCCGTCCGTTTAA 59.653 47.619 0.00 0.00 37.00 1.52
2009 2075 0.975135 TGGGTTGATCCGTCCGTTTA 59.025 50.000 0.00 0.00 37.00 2.01
2010 2076 0.108963 TTGGGTTGATCCGTCCGTTT 59.891 50.000 0.00 0.00 37.00 3.60
2011 2077 0.321298 CTTGGGTTGATCCGTCCGTT 60.321 55.000 0.00 0.00 37.00 4.44
2012 2078 1.189524 TCTTGGGTTGATCCGTCCGT 61.190 55.000 0.00 0.00 37.00 4.69
2013 2079 0.036765 TTCTTGGGTTGATCCGTCCG 60.037 55.000 0.00 0.00 37.00 4.79
2014 2080 2.420058 ATTCTTGGGTTGATCCGTCC 57.580 50.000 0.00 0.00 37.00 4.79
2015 2081 4.138487 AGTATTCTTGGGTTGATCCGTC 57.862 45.455 0.00 0.00 37.00 4.79
2016 2082 4.441079 CGTAGTATTCTTGGGTTGATCCGT 60.441 45.833 0.00 0.00 37.00 4.69
2017 2083 4.049186 CGTAGTATTCTTGGGTTGATCCG 58.951 47.826 0.00 0.00 37.00 4.18
2018 2084 3.808174 GCGTAGTATTCTTGGGTTGATCC 59.192 47.826 0.00 0.00 0.00 3.36
2019 2085 4.270325 GTGCGTAGTATTCTTGGGTTGATC 59.730 45.833 0.00 0.00 0.00 2.92
2020 2086 4.189231 GTGCGTAGTATTCTTGGGTTGAT 58.811 43.478 0.00 0.00 0.00 2.57
2021 2087 3.007074 TGTGCGTAGTATTCTTGGGTTGA 59.993 43.478 0.00 0.00 0.00 3.18
2022 2088 3.331150 TGTGCGTAGTATTCTTGGGTTG 58.669 45.455 0.00 0.00 0.00 3.77
2023 2089 3.688694 TGTGCGTAGTATTCTTGGGTT 57.311 42.857 0.00 0.00 0.00 4.11
2024 2090 3.196901 TGATGTGCGTAGTATTCTTGGGT 59.803 43.478 0.00 0.00 0.00 4.51
2025 2091 3.792401 TGATGTGCGTAGTATTCTTGGG 58.208 45.455 0.00 0.00 0.00 4.12
2026 2092 3.246226 GCTGATGTGCGTAGTATTCTTGG 59.754 47.826 0.00 0.00 0.00 3.61
2027 2093 4.443850 GCTGATGTGCGTAGTATTCTTG 57.556 45.455 0.00 0.00 0.00 3.02
2038 2104 7.679113 GGAGTATCTTTTTCGCTGATGTGCG 62.679 48.000 2.27 2.27 46.41 5.34
2039 2105 4.494855 GGAGTATCTTTTTCGCTGATGTGC 60.495 45.833 0.00 0.00 33.73 4.57
2040 2106 4.034510 GGGAGTATCTTTTTCGCTGATGTG 59.965 45.833 0.00 0.00 33.73 3.21
2041 2107 4.080863 AGGGAGTATCTTTTTCGCTGATGT 60.081 41.667 0.00 0.00 33.51 3.06
2042 2108 4.446371 AGGGAGTATCTTTTTCGCTGATG 58.554 43.478 0.00 0.00 33.51 3.07
2043 2109 4.443598 GGAGGGAGTATCTTTTTCGCTGAT 60.444 45.833 0.00 0.00 34.72 2.90
2044 2110 3.118738 GGAGGGAGTATCTTTTTCGCTGA 60.119 47.826 0.00 0.00 34.72 4.26
2045 2111 3.198872 GGAGGGAGTATCTTTTTCGCTG 58.801 50.000 0.00 0.00 34.72 5.18
2046 2112 2.159085 CGGAGGGAGTATCTTTTTCGCT 60.159 50.000 0.00 0.00 36.91 4.93
2047 2113 2.202566 CGGAGGGAGTATCTTTTTCGC 58.797 52.381 0.00 0.00 33.73 4.70
2048 2114 3.445857 GACGGAGGGAGTATCTTTTTCG 58.554 50.000 0.00 0.00 33.73 3.46
2049 2115 3.737355 CGGACGGAGGGAGTATCTTTTTC 60.737 52.174 0.00 0.00 33.73 2.29
2050 2116 2.167900 CGGACGGAGGGAGTATCTTTTT 59.832 50.000 0.00 0.00 33.73 1.94
2051 2117 1.755380 CGGACGGAGGGAGTATCTTTT 59.245 52.381 0.00 0.00 33.73 2.27
2052 2118 1.400737 CGGACGGAGGGAGTATCTTT 58.599 55.000 0.00 0.00 33.73 2.52
2053 2119 0.467659 CCGGACGGAGGGAGTATCTT 60.468 60.000 4.40 0.00 37.50 2.40
2054 2120 1.150992 CCGGACGGAGGGAGTATCT 59.849 63.158 4.40 0.00 37.50 1.98
2055 2121 3.760917 CCGGACGGAGGGAGTATC 58.239 66.667 4.40 0.00 37.50 2.24
2062 2128 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
2063 2129 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
2064 2130 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
2065 2131 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
2066 2132 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
2067 2133 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
2068 2134 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
2069 2135 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
2070 2136 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
2071 2137 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
2072 2138 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2073 2139 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2074 2140 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2075 2141 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2076 2142 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2077 2143 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2078 2144 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2079 2145 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2080 2146 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2081 2147 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
2082 2148 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
2083 2149 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
2084 2150 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
2085 2151 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
2086 2152 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
2087 2153 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
2088 2154 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
2151 2217 9.959749 GATTTCCACACAGATGTAGTTTTTAAA 57.040 29.630 0.00 0.00 36.72 1.52
2152 2218 9.349713 AGATTTCCACACAGATGTAGTTTTTAA 57.650 29.630 0.00 0.00 36.72 1.52
2153 2219 8.918202 AGATTTCCACACAGATGTAGTTTTTA 57.082 30.769 0.00 0.00 36.72 1.52
2154 2220 7.823745 AGATTTCCACACAGATGTAGTTTTT 57.176 32.000 0.00 0.00 36.72 1.94
2155 2221 8.157476 ACTAGATTTCCACACAGATGTAGTTTT 58.843 33.333 0.00 0.00 36.72 2.43
2156 2222 7.604164 CACTAGATTTCCACACAGATGTAGTTT 59.396 37.037 0.00 0.00 36.72 2.66
2157 2223 7.099764 CACTAGATTTCCACACAGATGTAGTT 58.900 38.462 0.00 0.00 36.72 2.24
2158 2224 6.351371 CCACTAGATTTCCACACAGATGTAGT 60.351 42.308 0.00 0.00 36.72 2.73
2159 2225 6.045318 CCACTAGATTTCCACACAGATGTAG 58.955 44.000 0.00 0.00 36.72 2.74
2160 2226 5.483937 ACCACTAGATTTCCACACAGATGTA 59.516 40.000 0.00 0.00 36.72 2.29
2161 2227 4.287067 ACCACTAGATTTCCACACAGATGT 59.713 41.667 0.00 0.00 40.80 3.06
2162 2228 4.836825 ACCACTAGATTTCCACACAGATG 58.163 43.478 0.00 0.00 0.00 2.90
2163 2229 6.814954 ATACCACTAGATTTCCACACAGAT 57.185 37.500 0.00 0.00 0.00 2.90
2164 2230 6.895756 AGTATACCACTAGATTTCCACACAGA 59.104 38.462 0.00 0.00 34.98 3.41
2165 2231 7.113658 AGTATACCACTAGATTTCCACACAG 57.886 40.000 0.00 0.00 34.98 3.66
2166 2232 7.490657 AAGTATACCACTAGATTTCCACACA 57.509 36.000 0.00 0.00 36.04 3.72
2167 2233 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
2168 2234 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
2169 2235 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
2221 2287 4.614555 TTGATTCGAATTCCACGGAATG 57.385 40.909 12.81 1.33 43.26 2.67
2222 2288 4.142469 GGTTTGATTCGAATTCCACGGAAT 60.142 41.667 12.81 5.44 45.67 3.01
2223 2289 3.189702 GGTTTGATTCGAATTCCACGGAA 59.810 43.478 12.81 0.00 38.59 4.30
2224 2290 2.745281 GGTTTGATTCGAATTCCACGGA 59.255 45.455 12.81 0.00 0.00 4.69
2225 2291 2.486203 TGGTTTGATTCGAATTCCACGG 59.514 45.455 12.81 0.00 0.00 4.94
2226 2292 3.822594 TGGTTTGATTCGAATTCCACG 57.177 42.857 12.81 0.00 0.00 4.94
2227 2293 6.155827 TGATTTGGTTTGATTCGAATTCCAC 58.844 36.000 12.81 8.77 0.00 4.02
2228 2294 6.338214 TGATTTGGTTTGATTCGAATTCCA 57.662 33.333 12.81 14.77 0.00 3.53
2229 2295 7.650834 TTTGATTTGGTTTGATTCGAATTCC 57.349 32.000 12.81 12.57 0.00 3.01
2230 2296 8.382875 GGATTTGATTTGGTTTGATTCGAATTC 58.617 33.333 12.81 6.39 0.00 2.17
2231 2297 7.877097 TGGATTTGATTTGGTTTGATTCGAATT 59.123 29.630 12.81 0.00 0.00 2.17
2232 2298 7.385267 TGGATTTGATTTGGTTTGATTCGAAT 58.615 30.769 11.20 11.20 0.00 3.34
2233 2299 6.753180 TGGATTTGATTTGGTTTGATTCGAA 58.247 32.000 0.00 0.00 0.00 3.71
2234 2300 6.338214 TGGATTTGATTTGGTTTGATTCGA 57.662 33.333 0.00 0.00 0.00 3.71
2235 2301 5.062558 GCTGGATTTGATTTGGTTTGATTCG 59.937 40.000 0.00 0.00 0.00 3.34
2236 2302 5.352293 GGCTGGATTTGATTTGGTTTGATTC 59.648 40.000 0.00 0.00 0.00 2.52
2237 2303 5.247862 GGCTGGATTTGATTTGGTTTGATT 58.752 37.500 0.00 0.00 0.00 2.57
2238 2304 4.323715 GGGCTGGATTTGATTTGGTTTGAT 60.324 41.667 0.00 0.00 0.00 2.57
2239 2305 3.007831 GGGCTGGATTTGATTTGGTTTGA 59.992 43.478 0.00 0.00 0.00 2.69
2240 2306 3.337358 GGGCTGGATTTGATTTGGTTTG 58.663 45.455 0.00 0.00 0.00 2.93
2241 2307 2.305635 GGGGCTGGATTTGATTTGGTTT 59.694 45.455 0.00 0.00 0.00 3.27
2242 2308 1.908619 GGGGCTGGATTTGATTTGGTT 59.091 47.619 0.00 0.00 0.00 3.67
2243 2309 1.571955 GGGGCTGGATTTGATTTGGT 58.428 50.000 0.00 0.00 0.00 3.67
2244 2310 0.832626 GGGGGCTGGATTTGATTTGG 59.167 55.000 0.00 0.00 0.00 3.28
2245 2311 1.570803 TGGGGGCTGGATTTGATTTG 58.429 50.000 0.00 0.00 0.00 2.32
2246 2312 2.121129 CATGGGGGCTGGATTTGATTT 58.879 47.619 0.00 0.00 0.00 2.17
2247 2313 1.291637 TCATGGGGGCTGGATTTGATT 59.708 47.619 0.00 0.00 0.00 2.57
2248 2314 0.935942 TCATGGGGGCTGGATTTGAT 59.064 50.000 0.00 0.00 0.00 2.57
2249 2315 0.709397 TTCATGGGGGCTGGATTTGA 59.291 50.000 0.00 0.00 0.00 2.69
2250 2316 1.570803 TTTCATGGGGGCTGGATTTG 58.429 50.000 0.00 0.00 0.00 2.32
2251 2317 2.340721 TTTTCATGGGGGCTGGATTT 57.659 45.000 0.00 0.00 0.00 2.17
2252 2318 2.401568 GATTTTCATGGGGGCTGGATT 58.598 47.619 0.00 0.00 0.00 3.01
2253 2319 1.413517 GGATTTTCATGGGGGCTGGAT 60.414 52.381 0.00 0.00 0.00 3.41
2254 2320 0.032217 GGATTTTCATGGGGGCTGGA 60.032 55.000 0.00 0.00 0.00 3.86
2255 2321 1.050421 GGGATTTTCATGGGGGCTGG 61.050 60.000 0.00 0.00 0.00 4.85
2256 2322 1.050421 GGGGATTTTCATGGGGGCTG 61.050 60.000 0.00 0.00 0.00 4.85
2257 2323 1.314518 GGGGATTTTCATGGGGGCT 59.685 57.895 0.00 0.00 0.00 5.19
2258 2324 1.766059 GGGGGATTTTCATGGGGGC 60.766 63.158 0.00 0.00 0.00 5.80
2259 2325 0.398948 CTGGGGGATTTTCATGGGGG 60.399 60.000 0.00 0.00 0.00 5.40
2260 2326 0.398948 CCTGGGGGATTTTCATGGGG 60.399 60.000 0.00 0.00 33.58 4.96
2261 2327 3.228939 CCTGGGGGATTTTCATGGG 57.771 57.895 0.00 0.00 33.58 4.00
2277 2343 4.838152 AATGCACGCGCGATCCCT 62.838 61.111 39.36 11.25 42.97 4.20
2278 2344 4.299316 GAATGCACGCGCGATCCC 62.299 66.667 39.36 20.39 42.97 3.85
2279 2345 3.563088 TGAATGCACGCGCGATCC 61.563 61.111 39.36 22.96 42.97 3.36
2280 2346 2.350091 GTGAATGCACGCGCGATC 60.350 61.111 39.36 26.09 42.97 3.69
2288 2354 1.503542 CTTGCGGGAGTGAATGCAC 59.496 57.895 0.00 0.00 45.49 4.57
2289 2355 1.675310 CCTTGCGGGAGTGAATGCA 60.675 57.895 0.00 0.00 37.23 3.96
2290 2356 3.056313 GCCTTGCGGGAGTGAATGC 62.056 63.158 0.00 0.00 37.23 3.56
2291 2357 2.409870 GGCCTTGCGGGAGTGAATG 61.410 63.158 0.00 0.00 37.23 2.67
2292 2358 2.044946 GGCCTTGCGGGAGTGAAT 60.045 61.111 0.00 0.00 37.23 2.57
2293 2359 4.697756 CGGCCTTGCGGGAGTGAA 62.698 66.667 0.00 0.00 37.23 3.18
2295 2361 2.869503 ATTACGGCCTTGCGGGAGTG 62.870 60.000 0.00 0.00 37.23 3.51
2296 2362 1.332144 TATTACGGCCTTGCGGGAGT 61.332 55.000 0.00 0.00 37.23 3.85
2297 2363 0.179067 TTATTACGGCCTTGCGGGAG 60.179 55.000 0.00 0.00 37.23 4.30
2298 2364 0.252479 TTTATTACGGCCTTGCGGGA 59.748 50.000 0.00 0.00 37.23 5.14
2299 2365 0.379316 GTTTATTACGGCCTTGCGGG 59.621 55.000 0.00 0.00 33.14 6.13
2300 2366 1.088306 TGTTTATTACGGCCTTGCGG 58.912 50.000 0.00 0.00 35.02 5.69
2301 2367 2.417239 TCTTGTTTATTACGGCCTTGCG 59.583 45.455 0.00 0.00 0.00 4.85
2302 2368 3.181500 CCTCTTGTTTATTACGGCCTTGC 60.181 47.826 0.00 0.00 0.00 4.01
2303 2369 3.181500 GCCTCTTGTTTATTACGGCCTTG 60.181 47.826 0.00 0.00 0.00 3.61
2304 2370 3.014623 GCCTCTTGTTTATTACGGCCTT 58.985 45.455 0.00 0.00 0.00 4.35
2305 2371 2.640184 GCCTCTTGTTTATTACGGCCT 58.360 47.619 0.00 0.00 0.00 5.19
2307 2373 1.329599 CGGCCTCTTGTTTATTACGGC 59.670 52.381 0.00 0.00 35.41 5.68
2308 2374 1.329599 GCGGCCTCTTGTTTATTACGG 59.670 52.381 0.00 0.00 0.00 4.02
2309 2375 1.005347 CGCGGCCTCTTGTTTATTACG 60.005 52.381 0.00 0.00 0.00 3.18
2310 2376 2.004733 ACGCGGCCTCTTGTTTATTAC 58.995 47.619 12.47 0.00 0.00 1.89
2311 2377 2.389962 ACGCGGCCTCTTGTTTATTA 57.610 45.000 12.47 0.00 0.00 0.98
2312 2378 2.389962 TACGCGGCCTCTTGTTTATT 57.610 45.000 12.47 0.00 0.00 1.40
2313 2379 2.389962 TTACGCGGCCTCTTGTTTAT 57.610 45.000 12.47 0.00 0.00 1.40
2314 2380 1.799994 GTTTACGCGGCCTCTTGTTTA 59.200 47.619 12.47 0.00 0.00 2.01
2315 2381 0.589708 GTTTACGCGGCCTCTTGTTT 59.410 50.000 12.47 0.00 0.00 2.83
2316 2382 1.232621 GGTTTACGCGGCCTCTTGTT 61.233 55.000 12.47 0.00 0.00 2.83
2317 2383 1.670083 GGTTTACGCGGCCTCTTGT 60.670 57.895 12.47 0.00 0.00 3.16
2318 2384 1.669760 TGGTTTACGCGGCCTCTTG 60.670 57.895 12.47 0.00 0.00 3.02
2319 2385 1.670083 GTGGTTTACGCGGCCTCTT 60.670 57.895 12.47 0.00 0.00 2.85
2320 2386 2.047560 GTGGTTTACGCGGCCTCT 60.048 61.111 12.47 0.00 0.00 3.69
2329 2395 1.142474 CTTGACGACCCGTGGTTTAC 58.858 55.000 0.00 0.00 41.37 2.01
2330 2396 0.600782 GCTTGACGACCCGTGGTTTA 60.601 55.000 0.00 0.00 41.37 2.01
2331 2397 1.890510 GCTTGACGACCCGTGGTTT 60.891 57.895 0.00 0.00 41.37 3.27
2332 2398 2.280592 GCTTGACGACCCGTGGTT 60.281 61.111 0.00 0.00 41.37 3.67
2367 2433 3.927163 AATGTCGTCCCGTGCCGTC 62.927 63.158 0.00 0.00 0.00 4.79
2368 2434 2.999739 AAAATGTCGTCCCGTGCCGT 63.000 55.000 0.00 0.00 0.00 5.68
2369 2435 2.235536 GAAAATGTCGTCCCGTGCCG 62.236 60.000 0.00 0.00 0.00 5.69
2370 2436 1.231958 TGAAAATGTCGTCCCGTGCC 61.232 55.000 0.00 0.00 0.00 5.01
2371 2437 0.589223 TTGAAAATGTCGTCCCGTGC 59.411 50.000 0.00 0.00 0.00 5.34
2372 2438 2.603652 GGTTTGAAAATGTCGTCCCGTG 60.604 50.000 0.00 0.00 0.00 4.94
2373 2439 1.605232 GGTTTGAAAATGTCGTCCCGT 59.395 47.619 0.00 0.00 0.00 5.28
2374 2440 1.068816 GGGTTTGAAAATGTCGTCCCG 60.069 52.381 0.00 0.00 0.00 5.14
2375 2441 1.068816 CGGGTTTGAAAATGTCGTCCC 60.069 52.381 0.00 0.00 32.79 4.46
2376 2442 1.664874 GCGGGTTTGAAAATGTCGTCC 60.665 52.381 0.00 0.00 0.00 4.79
2377 2443 1.265905 AGCGGGTTTGAAAATGTCGTC 59.734 47.619 0.00 0.00 0.00 4.20
2378 2444 1.265905 GAGCGGGTTTGAAAATGTCGT 59.734 47.619 0.00 0.00 0.00 4.34
2379 2445 1.724654 CGAGCGGGTTTGAAAATGTCG 60.725 52.381 0.00 0.00 0.00 4.35
2380 2446 1.963747 CGAGCGGGTTTGAAAATGTC 58.036 50.000 0.00 0.00 0.00 3.06
2381 2447 0.039527 GCGAGCGGGTTTGAAAATGT 60.040 50.000 0.00 0.00 0.00 2.71
2382 2448 0.240945 AGCGAGCGGGTTTGAAAATG 59.759 50.000 0.00 0.00 0.00 2.32
2383 2449 0.521735 GAGCGAGCGGGTTTGAAAAT 59.478 50.000 0.00 0.00 0.00 1.82
2384 2450 1.837538 CGAGCGAGCGGGTTTGAAAA 61.838 55.000 0.00 0.00 0.00 2.29
2385 2451 2.314647 CGAGCGAGCGGGTTTGAAA 61.315 57.895 0.00 0.00 0.00 2.69
2386 2452 2.736995 CGAGCGAGCGGGTTTGAA 60.737 61.111 0.00 0.00 0.00 2.69
2396 2462 4.615834 GGGTAGCGAGCGAGCGAG 62.616 72.222 1.41 0.00 43.00 5.03
2398 2464 3.701604 AAAGGGTAGCGAGCGAGCG 62.702 63.158 0.00 0.00 43.00 5.03
2399 2465 1.422179 GAAAAGGGTAGCGAGCGAGC 61.422 60.000 0.00 0.00 37.41 5.03
2400 2466 0.806492 GGAAAAGGGTAGCGAGCGAG 60.806 60.000 0.00 0.00 0.00 5.03
2401 2467 1.217244 GGAAAAGGGTAGCGAGCGA 59.783 57.895 0.00 0.00 0.00 4.93
2402 2468 1.814169 GGGAAAAGGGTAGCGAGCG 60.814 63.158 0.00 0.00 0.00 5.03
2403 2469 1.451567 GGGGAAAAGGGTAGCGAGC 60.452 63.158 0.00 0.00 0.00 5.03
2404 2470 0.618981 AAGGGGAAAAGGGTAGCGAG 59.381 55.000 0.00 0.00 0.00 5.03
2405 2471 0.326927 CAAGGGGAAAAGGGTAGCGA 59.673 55.000 0.00 0.00 0.00 4.93
2406 2472 0.679960 CCAAGGGGAAAAGGGTAGCG 60.680 60.000 0.00 0.00 35.59 4.26
2407 2473 3.283020 CCAAGGGGAAAAGGGTAGC 57.717 57.895 0.00 0.00 35.59 3.58
2438 2504 4.338710 TAGGTGCACCAACCGGCC 62.339 66.667 36.39 8.24 45.53 6.13
2439 2505 2.746277 CTAGGTGCACCAACCGGC 60.746 66.667 36.39 8.84 45.53 6.13
2440 2506 2.746277 GCTAGGTGCACCAACCGG 60.746 66.667 36.39 20.74 45.53 5.28
2441 2507 3.118454 CGCTAGGTGCACCAACCG 61.118 66.667 36.39 28.12 45.53 4.44
2442 2508 2.746277 CCGCTAGGTGCACCAACC 60.746 66.667 36.39 21.62 43.06 3.77
2443 2509 2.746277 CCCGCTAGGTGCACCAAC 60.746 66.667 36.39 23.19 43.06 3.77
2444 2510 4.715523 GCCCGCTAGGTGCACCAA 62.716 66.667 36.39 0.02 43.06 3.67
2461 2527 2.574212 GTCATTTTCGCGCTGCCG 60.574 61.111 5.56 0.00 37.57 5.69
2462 2528 2.202479 GGTCATTTTCGCGCTGCC 60.202 61.111 5.56 0.00 0.00 4.85
2463 2529 2.202479 GGGTCATTTTCGCGCTGC 60.202 61.111 5.56 0.00 0.00 5.25
2464 2530 1.021390 AGAGGGTCATTTTCGCGCTG 61.021 55.000 5.56 0.00 0.00 5.18
2465 2531 0.321653 AAGAGGGTCATTTTCGCGCT 60.322 50.000 5.56 0.00 0.00 5.92
2466 2532 1.062148 GTAAGAGGGTCATTTTCGCGC 59.938 52.381 0.00 0.00 0.00 6.86
2467 2533 1.664151 GGTAAGAGGGTCATTTTCGCG 59.336 52.381 0.00 0.00 0.00 5.87
2468 2534 2.014857 GGGTAAGAGGGTCATTTTCGC 58.985 52.381 0.00 0.00 0.00 4.70
2469 2535 2.640184 GGGGTAAGAGGGTCATTTTCG 58.360 52.381 0.00 0.00 0.00 3.46
2470 2536 2.682858 CGGGGGTAAGAGGGTCATTTTC 60.683 54.545 0.00 0.00 0.00 2.29
2471 2537 1.283905 CGGGGGTAAGAGGGTCATTTT 59.716 52.381 0.00 0.00 0.00 1.82
2472 2538 0.916809 CGGGGGTAAGAGGGTCATTT 59.083 55.000 0.00 0.00 0.00 2.32
2473 2539 0.986550 CCGGGGGTAAGAGGGTCATT 60.987 60.000 0.00 0.00 0.00 2.57
2474 2540 1.384082 CCGGGGGTAAGAGGGTCAT 60.384 63.158 0.00 0.00 0.00 3.06
2475 2541 2.039951 CCGGGGGTAAGAGGGTCA 59.960 66.667 0.00 0.00 0.00 4.02
2476 2542 3.477346 GCCGGGGGTAAGAGGGTC 61.477 72.222 2.18 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.