Multiple sequence alignment - TraesCS4A01G336100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G336100 chr4A 100.000 3632 0 0 1 3632 618465665 618462034 0.000000e+00 6708.0
1 TraesCS4A01G336100 chr4A 87.884 1791 165 35 1109 2873 618529810 618528046 0.000000e+00 2058.0
2 TraesCS4A01G336100 chr4A 83.000 1200 154 32 1475 2647 618412596 618411420 0.000000e+00 1040.0
3 TraesCS4A01G336100 chr4A 90.470 808 37 15 1065 1840 618419114 618418315 0.000000e+00 1029.0
4 TraesCS4A01G336100 chr4A 90.566 636 31 5 2914 3537 618528050 618527432 0.000000e+00 815.0
5 TraesCS4A01G336100 chr4A 85.714 756 99 7 1895 2643 618418223 618417470 0.000000e+00 789.0
6 TraesCS4A01G336100 chr4A 81.538 325 40 10 1065 1386 618412965 618412658 2.170000e-62 250.0
7 TraesCS4A01G336100 chr4A 96.512 86 3 0 3407 3492 590228011 590227926 3.780000e-30 143.0
8 TraesCS4A01G336100 chr5D 90.894 1790 117 23 880 2642 547893102 547891332 0.000000e+00 2361.0
9 TraesCS4A01G336100 chr5D 88.619 1274 120 19 1477 2740 547925931 547924673 0.000000e+00 1526.0
10 TraesCS4A01G336100 chr5D 81.910 1288 173 45 1475 2729 547840840 547839580 0.000000e+00 1033.0
11 TraesCS4A01G336100 chr5D 87.368 760 85 8 1895 2647 547883292 547882537 0.000000e+00 861.0
12 TraesCS4A01G336100 chr5D 82.647 801 69 28 1065 1840 547884139 547883384 0.000000e+00 645.0
13 TraesCS4A01G336100 chr5D 80.268 745 77 48 1109 1816 547841208 547840497 7.000000e-137 497.0
14 TraesCS4A01G336100 chr5D 80.906 508 70 20 2920 3409 547924501 547924003 3.420000e-100 375.0
15 TraesCS4A01G336100 chr5D 84.553 369 33 12 1109 1473 547926317 547925969 9.660000e-91 344.0
16 TraesCS4A01G336100 chr5D 89.503 181 13 5 259 438 437989661 437989486 1.310000e-54 224.0
17 TraesCS4A01G336100 chr5D 95.489 133 6 0 2737 2869 547924636 547924504 2.840000e-51 213.0
18 TraesCS4A01G336100 chr5D 89.683 126 10 2 313 438 437989101 437988979 1.350000e-34 158.0
19 TraesCS4A01G336100 chr5D 94.186 86 2 1 488 573 565043092 565043174 1.060000e-25 128.0
20 TraesCS4A01G336100 chr5B 86.814 1714 132 39 1065 2730 691825388 691823721 0.000000e+00 1827.0
21 TraesCS4A01G336100 chr5B 87.839 1291 125 23 1477 2740 691942610 691941325 0.000000e+00 1485.0
22 TraesCS4A01G336100 chr5B 83.616 1532 190 42 1109 2613 691798496 691796999 0.000000e+00 1382.0
23 TraesCS4A01G336100 chr5B 82.588 850 116 19 1895 2729 691772961 691772129 0.000000e+00 721.0
24 TraesCS4A01G336100 chr5B 82.010 806 78 36 1065 1840 691773821 691773053 1.110000e-174 623.0
25 TraesCS4A01G336100 chr5B 90.224 491 28 4 2939 3409 691823159 691822669 1.110000e-174 623.0
26 TraesCS4A01G336100 chr5B 88.378 413 22 6 2914 3314 691941156 691940758 1.180000e-129 473.0
27 TraesCS4A01G336100 chr5B 87.397 365 31 8 1109 1473 691943005 691942656 4.370000e-109 405.0
28 TraesCS4A01G336100 chr5B 89.224 232 13 3 259 490 691808116 691807897 2.760000e-71 279.0
29 TraesCS4A01G336100 chr5B 82.566 304 23 6 802 1077 691825713 691825412 1.300000e-59 241.0
30 TraesCS4A01G336100 chr5B 93.662 142 9 0 3491 3632 691822670 691822529 2.840000e-51 213.0
31 TraesCS4A01G336100 chr5B 92.308 143 11 0 2722 2864 691823560 691823418 1.710000e-48 204.0
32 TraesCS4A01G336100 chr5B 85.308 211 9 6 586 793 691807894 691807703 7.950000e-47 198.0
33 TraesCS4A01G336100 chr5B 94.845 97 5 0 3397 3493 27817211 27817307 6.280000e-33 152.0
34 TraesCS4A01G336100 chr5B 83.750 160 18 7 266 423 295199617 295199770 1.050000e-30 145.0
35 TraesCS4A01G336100 chr5B 96.923 65 2 0 3345 3409 691940758 691940694 3.830000e-20 110.0
36 TraesCS4A01G336100 chr5B 83.908 87 7 4 707 793 691825826 691825747 3.890000e-10 76.8
37 TraesCS4A01G336100 chr7A 97.736 265 6 0 1 265 720935058 720934794 1.190000e-124 457.0
38 TraesCS4A01G336100 chr5A 98.649 222 3 0 42 263 311131431 311131652 9.450000e-106 394.0
39 TraesCS4A01G336100 chr5A 93.814 97 6 0 3396 3492 59700894 59700798 2.920000e-31 147.0
40 TraesCS4A01G336100 chr6D 85.845 219 20 7 264 476 161250606 161250393 4.720000e-54 222.0
41 TraesCS4A01G336100 chr6D 94.681 94 5 0 3407 3500 255445498 255445405 2.920000e-31 147.0
42 TraesCS4A01G336100 chr4D 94.737 95 5 0 3399 3493 50156133 50156039 8.130000e-32 148.0
43 TraesCS4A01G336100 chr4D 89.320 103 9 1 487 589 473133545 473133445 1.060000e-25 128.0
44 TraesCS4A01G336100 chr7B 97.647 85 2 0 3408 3492 428965845 428965929 2.920000e-31 147.0
45 TraesCS4A01G336100 chr7B 82.286 175 19 9 266 438 746050532 746050368 1.360000e-29 141.0
46 TraesCS4A01G336100 chr7B 93.548 93 6 0 3400 3492 428965937 428965845 4.890000e-29 139.0
47 TraesCS4A01G336100 chr1B 83.436 163 19 7 266 426 280211636 280211480 1.050000e-30 145.0
48 TraesCS4A01G336100 chr1A 79.638 221 30 12 272 485 390802863 390802651 1.050000e-30 145.0
49 TraesCS4A01G336100 chr1A 95.349 86 4 0 3408 3493 498666622 498666537 1.760000e-28 137.0
50 TraesCS4A01G336100 chr6B 81.152 191 24 8 306 489 663984201 663984016 3.780000e-30 143.0
51 TraesCS4A01G336100 chr6B 90.196 102 7 1 488 589 633054114 633054016 2.940000e-26 130.0
52 TraesCS4A01G336100 chr2A 92.473 93 4 2 484 576 377135514 377135603 2.940000e-26 130.0
53 TraesCS4A01G336100 chr3D 89.423 104 8 2 487 590 452654820 452654720 1.060000e-25 128.0
54 TraesCS4A01G336100 chr3D 90.323 93 5 3 481 573 84326569 84326657 6.370000e-23 119.0
55 TraesCS4A01G336100 chr1D 88.785 107 9 2 488 594 354566045 354565942 1.060000e-25 128.0
56 TraesCS4A01G336100 chr3A 89.320 103 8 1 487 589 90295877 90295976 3.810000e-25 126.0
57 TraesCS4A01G336100 chr7D 87.850 107 10 2 488 594 277746361 277746258 4.920000e-24 122.0
58 TraesCS4A01G336100 chr7D 82.432 148 17 8 3403 3543 221683477 221683622 1.770000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G336100 chr4A 618462034 618465665 3631 True 6708.00 6708 100.00000 1 3632 1 chr4A.!!$R2 3631
1 TraesCS4A01G336100 chr4A 618527432 618529810 2378 True 1436.50 2058 89.22500 1109 3537 2 chr4A.!!$R5 2428
2 TraesCS4A01G336100 chr4A 618417470 618419114 1644 True 909.00 1029 88.09200 1065 2643 2 chr4A.!!$R4 1578
3 TraesCS4A01G336100 chr4A 618411420 618412965 1545 True 645.00 1040 82.26900 1065 2647 2 chr4A.!!$R3 1582
4 TraesCS4A01G336100 chr5D 547891332 547893102 1770 True 2361.00 2361 90.89400 880 2642 1 chr5D.!!$R1 1762
5 TraesCS4A01G336100 chr5D 547839580 547841208 1628 True 765.00 1033 81.08900 1109 2729 2 chr5D.!!$R3 1620
6 TraesCS4A01G336100 chr5D 547882537 547884139 1602 True 753.00 861 85.00750 1065 2647 2 chr5D.!!$R4 1582
7 TraesCS4A01G336100 chr5D 547924003 547926317 2314 True 614.50 1526 87.39175 1109 3409 4 chr5D.!!$R5 2300
8 TraesCS4A01G336100 chr5B 691796999 691798496 1497 True 1382.00 1382 83.61600 1109 2613 1 chr5B.!!$R1 1504
9 TraesCS4A01G336100 chr5B 691772129 691773821 1692 True 672.00 721 82.29900 1065 2729 2 chr5B.!!$R2 1664
10 TraesCS4A01G336100 chr5B 691940694 691943005 2311 True 618.25 1485 90.13425 1109 3409 4 chr5B.!!$R5 2300
11 TraesCS4A01G336100 chr5B 691822529 691825826 3297 True 530.80 1827 88.24700 707 3632 6 chr5B.!!$R4 2925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.108472 GCCCGTTAGGTGTACAGGAC 60.108 60.0 0.00 0.0 38.26 3.85 F
71 72 0.171903 CCCGTTAGGTGTACAGGACG 59.828 60.0 0.00 4.6 35.12 4.79 F
73 74 0.171903 CGTTAGGTGTACAGGACGGG 59.828 60.0 0.00 0.0 0.00 5.28 F
94 95 0.172578 CGCTACACATTCGAGGACCA 59.827 55.0 0.00 0.0 0.00 4.02 F
103 104 0.321671 TTCGAGGACCAGAAAGGCTG 59.678 55.0 0.00 0.0 43.14 4.85 F
2310 2637 0.107643 TCATGAACTCACGTGCCCAA 59.892 50.0 11.67 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 2239 0.106918 CTCTCGAGCTCCTGGTACCT 60.107 60.000 14.36 0.0 0.00 3.08 R
2238 2565 2.190578 GGCTGTCCCGCTGCTAAT 59.809 61.111 0.00 0.0 41.14 1.73 R
2259 2586 2.672651 TGCACCACCGGCTCATTG 60.673 61.111 0.00 0.0 0.00 2.82 R
2310 2637 1.229359 CTCCATGGCCTGCTGGATT 59.771 57.895 18.68 0.0 40.66 3.01 R
2355 2682 2.752358 CACTGGCTGGCCTTCTCA 59.248 61.111 13.05 0.0 36.94 3.27 R
3481 4298 2.376109 TGTTAGCTTCTACTCCCTCCG 58.624 52.381 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.617540 TTTTTCTATGCGTGTGTGTGG 57.382 42.857 0.00 0.00 0.00 4.17
28 29 2.248280 TTTCTATGCGTGTGTGTGGT 57.752 45.000 0.00 0.00 0.00 4.16
29 30 2.248280 TTCTATGCGTGTGTGTGGTT 57.752 45.000 0.00 0.00 0.00 3.67
30 31 2.248280 TCTATGCGTGTGTGTGGTTT 57.752 45.000 0.00 0.00 0.00 3.27
31 32 1.870402 TCTATGCGTGTGTGTGGTTTG 59.130 47.619 0.00 0.00 0.00 2.93
32 33 1.601903 CTATGCGTGTGTGTGGTTTGT 59.398 47.619 0.00 0.00 0.00 2.83
33 34 0.814457 ATGCGTGTGTGTGGTTTGTT 59.186 45.000 0.00 0.00 0.00 2.83
34 35 1.450025 TGCGTGTGTGTGGTTTGTTA 58.550 45.000 0.00 0.00 0.00 2.41
35 36 1.810755 TGCGTGTGTGTGGTTTGTTAA 59.189 42.857 0.00 0.00 0.00 2.01
36 37 2.178783 GCGTGTGTGTGGTTTGTTAAC 58.821 47.619 0.00 0.00 0.00 2.01
37 38 2.432856 CGTGTGTGTGGTTTGTTAACG 58.567 47.619 0.26 0.00 35.00 3.18
38 39 2.788030 GTGTGTGTGGTTTGTTAACGG 58.212 47.619 0.26 0.00 35.00 4.44
39 40 1.743958 TGTGTGTGGTTTGTTAACGGG 59.256 47.619 0.26 0.00 35.00 5.28
40 41 1.744522 GTGTGTGGTTTGTTAACGGGT 59.255 47.619 0.26 0.00 35.00 5.28
41 42 2.164017 GTGTGTGGTTTGTTAACGGGTT 59.836 45.455 0.26 0.00 35.00 4.11
42 43 2.163815 TGTGTGGTTTGTTAACGGGTTG 59.836 45.455 0.26 0.00 35.00 3.77
43 44 1.749634 TGTGGTTTGTTAACGGGTTGG 59.250 47.619 0.26 0.00 35.00 3.77
44 45 1.750206 GTGGTTTGTTAACGGGTTGGT 59.250 47.619 0.26 0.00 35.00 3.67
45 46 2.166050 GTGGTTTGTTAACGGGTTGGTT 59.834 45.455 0.26 0.00 35.00 3.67
46 47 3.379688 GTGGTTTGTTAACGGGTTGGTTA 59.620 43.478 0.26 0.00 35.00 2.85
47 48 3.631227 TGGTTTGTTAACGGGTTGGTTAG 59.369 43.478 0.26 0.00 34.17 2.34
48 49 3.004629 GGTTTGTTAACGGGTTGGTTAGG 59.995 47.826 0.26 0.00 34.17 2.69
49 50 1.894881 TGTTAACGGGTTGGTTAGGC 58.105 50.000 0.26 0.00 34.17 3.93
50 51 0.798159 GTTAACGGGTTGGTTAGGCG 59.202 55.000 0.00 0.00 34.17 5.52
51 52 0.321475 TTAACGGGTTGGTTAGGCGG 60.321 55.000 0.00 0.00 34.17 6.13
52 53 2.801483 TAACGGGTTGGTTAGGCGGC 62.801 60.000 0.00 0.00 0.00 6.53
56 57 4.710167 GTTGGTTAGGCGGCCCGT 62.710 66.667 17.02 0.00 35.76 5.28
57 58 3.956314 TTGGTTAGGCGGCCCGTT 61.956 61.111 17.02 0.00 35.76 4.44
58 59 2.591072 TTGGTTAGGCGGCCCGTTA 61.591 57.895 17.02 0.00 35.76 3.18
59 60 2.202974 GGTTAGGCGGCCCGTTAG 60.203 66.667 17.02 0.00 35.76 2.34
60 61 2.202974 GTTAGGCGGCCCGTTAGG 60.203 66.667 17.02 0.00 39.47 2.69
61 62 2.684655 TTAGGCGGCCCGTTAGGT 60.685 61.111 17.02 0.00 38.26 3.08
62 63 3.021473 TTAGGCGGCCCGTTAGGTG 62.021 63.158 17.02 0.00 38.26 4.00
64 65 2.852563 TAGGCGGCCCGTTAGGTGTA 62.853 60.000 17.02 0.00 38.26 2.90
65 66 2.510012 GCGGCCCGTTAGGTGTAC 60.510 66.667 4.45 0.00 38.26 2.90
66 67 2.972267 CGGCCCGTTAGGTGTACA 59.028 61.111 0.00 0.00 38.26 2.90
67 68 1.153706 CGGCCCGTTAGGTGTACAG 60.154 63.158 0.00 0.00 38.26 2.74
68 69 1.219935 GGCCCGTTAGGTGTACAGG 59.780 63.158 0.00 0.00 38.26 4.00
69 70 1.259840 GGCCCGTTAGGTGTACAGGA 61.260 60.000 0.00 0.00 38.26 3.86
70 71 0.108472 GCCCGTTAGGTGTACAGGAC 60.108 60.000 0.00 0.00 38.26 3.85
71 72 0.171903 CCCGTTAGGTGTACAGGACG 59.828 60.000 0.00 4.60 35.12 4.79
72 73 0.171903 CCGTTAGGTGTACAGGACGG 59.828 60.000 18.69 18.69 43.12 4.79
73 74 0.171903 CGTTAGGTGTACAGGACGGG 59.828 60.000 0.00 0.00 0.00 5.28
74 75 0.533951 GTTAGGTGTACAGGACGGGG 59.466 60.000 0.00 0.00 0.00 5.73
75 76 1.259840 TTAGGTGTACAGGACGGGGC 61.260 60.000 0.00 0.00 0.00 5.80
76 77 4.446413 GGTGTACAGGACGGGGCG 62.446 72.222 0.00 0.00 0.00 6.13
79 80 3.142838 GTACAGGACGGGGCGCTA 61.143 66.667 7.64 0.00 0.00 4.26
80 81 3.142838 TACAGGACGGGGCGCTAC 61.143 66.667 7.64 0.00 0.00 3.58
81 82 3.942377 TACAGGACGGGGCGCTACA 62.942 63.158 7.64 0.00 0.00 2.74
82 83 4.814294 CAGGACGGGGCGCTACAC 62.814 72.222 7.64 0.00 0.00 2.90
84 85 4.157120 GGACGGGGCGCTACACAT 62.157 66.667 7.64 0.00 0.00 3.21
85 86 2.125269 GACGGGGCGCTACACATT 60.125 61.111 7.64 0.00 0.00 2.71
86 87 2.125269 ACGGGGCGCTACACATTC 60.125 61.111 7.64 0.00 0.00 2.67
87 88 3.261951 CGGGGCGCTACACATTCG 61.262 66.667 7.64 0.00 0.00 3.34
88 89 2.185867 GGGGCGCTACACATTCGA 59.814 61.111 7.64 0.00 0.00 3.71
89 90 1.883084 GGGGCGCTACACATTCGAG 60.883 63.158 7.64 0.00 0.00 4.04
90 91 1.883084 GGGCGCTACACATTCGAGG 60.883 63.158 7.64 0.00 0.00 4.63
91 92 1.141019 GGCGCTACACATTCGAGGA 59.859 57.895 7.64 0.00 0.00 3.71
92 93 1.146358 GGCGCTACACATTCGAGGAC 61.146 60.000 7.64 0.00 0.00 3.85
93 94 1.146358 GCGCTACACATTCGAGGACC 61.146 60.000 0.00 0.00 0.00 4.46
94 95 0.172578 CGCTACACATTCGAGGACCA 59.827 55.000 0.00 0.00 0.00 4.02
95 96 1.799181 CGCTACACATTCGAGGACCAG 60.799 57.143 0.00 0.00 0.00 4.00
96 97 1.476891 GCTACACATTCGAGGACCAGA 59.523 52.381 0.00 0.00 0.00 3.86
97 98 2.094182 GCTACACATTCGAGGACCAGAA 60.094 50.000 5.11 5.11 0.00 3.02
98 99 3.616560 GCTACACATTCGAGGACCAGAAA 60.617 47.826 6.52 0.00 0.00 2.52
99 100 3.045601 ACACATTCGAGGACCAGAAAG 57.954 47.619 6.52 5.28 0.00 2.62
100 101 2.289694 ACACATTCGAGGACCAGAAAGG 60.290 50.000 6.52 5.31 45.67 3.11
101 102 1.339151 ACATTCGAGGACCAGAAAGGC 60.339 52.381 6.52 0.00 43.14 4.35
102 103 1.065854 CATTCGAGGACCAGAAAGGCT 60.066 52.381 6.52 0.00 43.14 4.58
103 104 0.321671 TTCGAGGACCAGAAAGGCTG 59.678 55.000 0.00 0.00 43.14 4.85
113 114 2.299326 AGAAAGGCTGAGGCACATTT 57.701 45.000 9.23 0.00 40.87 2.32
114 115 2.601905 AGAAAGGCTGAGGCACATTTT 58.398 42.857 9.23 0.00 40.87 1.82
115 116 2.967887 AGAAAGGCTGAGGCACATTTTT 59.032 40.909 9.23 0.00 40.87 1.94
134 135 5.646467 TTTTTCGACCTGAAACGAGTAAG 57.354 39.130 0.00 0.00 45.98 2.34
135 136 3.293311 TTCGACCTGAAACGAGTAAGG 57.707 47.619 0.00 0.00 39.59 2.69
136 137 2.507484 TCGACCTGAAACGAGTAAGGA 58.493 47.619 0.00 0.00 34.49 3.36
137 138 3.087031 TCGACCTGAAACGAGTAAGGAT 58.913 45.455 0.00 0.00 34.49 3.24
138 139 3.508793 TCGACCTGAAACGAGTAAGGATT 59.491 43.478 0.00 0.00 34.49 3.01
139 140 3.858238 CGACCTGAAACGAGTAAGGATTC 59.142 47.826 0.00 0.00 33.78 2.52
140 141 4.617530 CGACCTGAAACGAGTAAGGATTCA 60.618 45.833 0.00 0.00 33.78 2.57
141 142 4.822026 ACCTGAAACGAGTAAGGATTCAG 58.178 43.478 6.80 6.80 44.05 3.02
142 143 4.527038 ACCTGAAACGAGTAAGGATTCAGA 59.473 41.667 13.71 0.00 46.16 3.27
143 144 4.865365 CCTGAAACGAGTAAGGATTCAGAC 59.135 45.833 13.71 0.00 46.16 3.51
144 145 4.482386 TGAAACGAGTAAGGATTCAGACG 58.518 43.478 0.00 0.00 0.00 4.18
145 146 2.563471 ACGAGTAAGGATTCAGACGC 57.437 50.000 0.00 0.00 0.00 5.19
146 147 2.093106 ACGAGTAAGGATTCAGACGCT 58.907 47.619 0.00 0.00 0.00 5.07
147 148 2.492484 ACGAGTAAGGATTCAGACGCTT 59.508 45.455 0.00 0.00 0.00 4.68
148 149 3.056749 ACGAGTAAGGATTCAGACGCTTT 60.057 43.478 0.00 0.00 0.00 3.51
149 150 3.927142 CGAGTAAGGATTCAGACGCTTTT 59.073 43.478 0.00 0.00 0.00 2.27
150 151 4.389077 CGAGTAAGGATTCAGACGCTTTTT 59.611 41.667 0.00 0.00 0.00 1.94
176 177 9.538508 TTTAAACTGAACTTTAGACTGAGTACC 57.461 33.333 0.00 0.00 0.00 3.34
177 178 6.980416 AACTGAACTTTAGACTGAGTACCT 57.020 37.500 0.00 0.00 0.00 3.08
178 179 8.474710 AAACTGAACTTTAGACTGAGTACCTA 57.525 34.615 0.00 0.00 0.00 3.08
179 180 7.690952 ACTGAACTTTAGACTGAGTACCTAG 57.309 40.000 0.00 0.00 0.00 3.02
180 181 7.232910 ACTGAACTTTAGACTGAGTACCTAGT 58.767 38.462 0.00 0.00 0.00 2.57
181 182 8.381636 ACTGAACTTTAGACTGAGTACCTAGTA 58.618 37.037 0.06 0.00 0.00 1.82
182 183 8.558973 TGAACTTTAGACTGAGTACCTAGTAC 57.441 38.462 0.06 0.00 39.10 2.73
183 184 8.159447 TGAACTTTAGACTGAGTACCTAGTACA 58.841 37.037 7.58 0.00 41.03 2.90
184 185 8.564509 AACTTTAGACTGAGTACCTAGTACAG 57.435 38.462 7.58 0.00 41.03 2.74
185 186 7.915930 ACTTTAGACTGAGTACCTAGTACAGA 58.084 38.462 7.58 0.00 41.03 3.41
186 187 7.823799 ACTTTAGACTGAGTACCTAGTACAGAC 59.176 40.741 7.58 0.00 41.03 3.51
187 188 5.758790 AGACTGAGTACCTAGTACAGACA 57.241 43.478 7.58 4.21 41.03 3.41
188 189 5.736813 AGACTGAGTACCTAGTACAGACAG 58.263 45.833 16.97 16.97 41.03 3.51
189 190 4.263435 ACTGAGTACCTAGTACAGACAGC 58.737 47.826 17.77 0.00 41.03 4.40
190 191 4.019141 ACTGAGTACCTAGTACAGACAGCT 60.019 45.833 17.77 0.00 41.03 4.24
236 237 8.956533 AAAAAGCAACCTGAAGCTAATTTAAA 57.043 26.923 0.00 0.00 40.90 1.52
237 238 8.956533 AAAAGCAACCTGAAGCTAATTTAAAA 57.043 26.923 0.00 0.00 40.90 1.52
238 239 8.956533 AAAGCAACCTGAAGCTAATTTAAAAA 57.043 26.923 0.00 0.00 40.90 1.94
239 240 7.946655 AGCAACCTGAAGCTAATTTAAAAAC 57.053 32.000 0.00 0.00 39.78 2.43
240 241 7.496747 AGCAACCTGAAGCTAATTTAAAAACA 58.503 30.769 0.00 0.00 39.78 2.83
241 242 7.653311 AGCAACCTGAAGCTAATTTAAAAACAG 59.347 33.333 0.00 0.00 39.78 3.16
242 243 7.651704 GCAACCTGAAGCTAATTTAAAAACAGA 59.348 33.333 0.00 0.00 0.00 3.41
243 244 8.968242 CAACCTGAAGCTAATTTAAAAACAGAC 58.032 33.333 0.00 0.00 0.00 3.51
244 245 8.232913 ACCTGAAGCTAATTTAAAAACAGACA 57.767 30.769 0.00 0.00 0.00 3.41
245 246 8.860088 ACCTGAAGCTAATTTAAAAACAGACAT 58.140 29.630 0.00 0.00 0.00 3.06
246 247 9.346725 CCTGAAGCTAATTTAAAAACAGACATC 57.653 33.333 0.00 0.00 0.00 3.06
262 263 6.459257 CAGACATCTGTTGTTTAGTCACTC 57.541 41.667 0.40 0.00 39.18 3.51
263 264 5.406780 CAGACATCTGTTGTTTAGTCACTCC 59.593 44.000 0.40 0.00 39.18 3.85
264 265 4.642429 ACATCTGTTGTTTAGTCACTCCC 58.358 43.478 0.00 0.00 33.74 4.30
265 266 4.348168 ACATCTGTTGTTTAGTCACTCCCT 59.652 41.667 0.00 0.00 33.74 4.20
266 267 5.163195 ACATCTGTTGTTTAGTCACTCCCTT 60.163 40.000 0.00 0.00 33.74 3.95
267 268 5.367945 TCTGTTGTTTAGTCACTCCCTTT 57.632 39.130 0.00 0.00 0.00 3.11
268 269 5.751586 TCTGTTGTTTAGTCACTCCCTTTT 58.248 37.500 0.00 0.00 0.00 2.27
269 270 5.820947 TCTGTTGTTTAGTCACTCCCTTTTC 59.179 40.000 0.00 0.00 0.00 2.29
270 271 5.751586 TGTTGTTTAGTCACTCCCTTTTCT 58.248 37.500 0.00 0.00 0.00 2.52
271 272 6.184789 TGTTGTTTAGTCACTCCCTTTTCTT 58.815 36.000 0.00 0.00 0.00 2.52
272 273 6.661805 TGTTGTTTAGTCACTCCCTTTTCTTT 59.338 34.615 0.00 0.00 0.00 2.52
273 274 7.177744 TGTTGTTTAGTCACTCCCTTTTCTTTT 59.822 33.333 0.00 0.00 0.00 2.27
274 275 7.712204 TGTTTAGTCACTCCCTTTTCTTTTT 57.288 32.000 0.00 0.00 0.00 1.94
275 276 7.768240 TGTTTAGTCACTCCCTTTTCTTTTTC 58.232 34.615 0.00 0.00 0.00 2.29
276 277 7.394923 TGTTTAGTCACTCCCTTTTCTTTTTCA 59.605 33.333 0.00 0.00 0.00 2.69
277 278 5.836821 AGTCACTCCCTTTTCTTTTTCAC 57.163 39.130 0.00 0.00 0.00 3.18
278 279 5.510430 AGTCACTCCCTTTTCTTTTTCACT 58.490 37.500 0.00 0.00 0.00 3.41
279 280 5.952347 AGTCACTCCCTTTTCTTTTTCACTT 59.048 36.000 0.00 0.00 0.00 3.16
280 281 6.095580 AGTCACTCCCTTTTCTTTTTCACTTC 59.904 38.462 0.00 0.00 0.00 3.01
281 282 6.095580 GTCACTCCCTTTTCTTTTTCACTTCT 59.904 38.462 0.00 0.00 0.00 2.85
282 283 6.318900 TCACTCCCTTTTCTTTTTCACTTCTC 59.681 38.462 0.00 0.00 0.00 2.87
283 284 6.319911 CACTCCCTTTTCTTTTTCACTTCTCT 59.680 38.462 0.00 0.00 0.00 3.10
284 285 6.892456 ACTCCCTTTTCTTTTTCACTTCTCTT 59.108 34.615 0.00 0.00 0.00 2.85
285 286 7.397476 ACTCCCTTTTCTTTTTCACTTCTCTTT 59.603 33.333 0.00 0.00 0.00 2.52
286 287 8.134202 TCCCTTTTCTTTTTCACTTCTCTTTT 57.866 30.769 0.00 0.00 0.00 2.27
287 288 8.593679 TCCCTTTTCTTTTTCACTTCTCTTTTT 58.406 29.630 0.00 0.00 0.00 1.94
288 289 8.659491 CCCTTTTCTTTTTCACTTCTCTTTTTG 58.341 33.333 0.00 0.00 0.00 2.44
289 290 8.659491 CCTTTTCTTTTTCACTTCTCTTTTTGG 58.341 33.333 0.00 0.00 0.00 3.28
290 291 9.208022 CTTTTCTTTTTCACTTCTCTTTTTGGT 57.792 29.630 0.00 0.00 0.00 3.67
291 292 8.532977 TTTCTTTTTCACTTCTCTTTTTGGTG 57.467 30.769 0.00 0.00 0.00 4.17
292 293 6.099341 TCTTTTTCACTTCTCTTTTTGGTGC 58.901 36.000 0.00 0.00 0.00 5.01
293 294 5.398603 TTTTCACTTCTCTTTTTGGTGCA 57.601 34.783 0.00 0.00 0.00 4.57
294 295 5.398603 TTTCACTTCTCTTTTTGGTGCAA 57.601 34.783 0.00 0.00 0.00 4.08
295 296 5.398603 TTCACTTCTCTTTTTGGTGCAAA 57.601 34.783 0.00 0.00 0.00 3.68
296 297 5.596836 TCACTTCTCTTTTTGGTGCAAAT 57.403 34.783 0.00 0.00 33.19 2.32
297 298 5.976458 TCACTTCTCTTTTTGGTGCAAATT 58.024 33.333 0.00 0.00 33.19 1.82
298 299 6.042143 TCACTTCTCTTTTTGGTGCAAATTC 58.958 36.000 0.00 0.00 33.19 2.17
299 300 5.811613 CACTTCTCTTTTTGGTGCAAATTCA 59.188 36.000 0.00 0.00 33.19 2.57
300 301 6.019318 CACTTCTCTTTTTGGTGCAAATTCAG 60.019 38.462 0.00 0.00 33.19 3.02
301 302 5.850557 TCTCTTTTTGGTGCAAATTCAGA 57.149 34.783 0.00 0.00 33.19 3.27
302 303 6.409524 TCTCTTTTTGGTGCAAATTCAGAT 57.590 33.333 0.00 0.00 33.19 2.90
303 304 6.218019 TCTCTTTTTGGTGCAAATTCAGATG 58.782 36.000 0.00 0.00 33.19 2.90
304 305 4.751098 TCTTTTTGGTGCAAATTCAGATGC 59.249 37.500 0.00 0.00 42.86 3.91
305 306 4.339872 TTTTGGTGCAAATTCAGATGCT 57.660 36.364 0.00 0.00 42.97 3.79
306 307 4.339872 TTTGGTGCAAATTCAGATGCTT 57.660 36.364 0.00 0.00 42.97 3.91
307 308 4.339872 TTGGTGCAAATTCAGATGCTTT 57.660 36.364 0.00 0.00 42.97 3.51
308 309 4.339872 TGGTGCAAATTCAGATGCTTTT 57.660 36.364 0.00 0.00 42.97 2.27
309 310 4.706035 TGGTGCAAATTCAGATGCTTTTT 58.294 34.783 0.00 0.00 42.97 1.94
310 311 5.851720 TGGTGCAAATTCAGATGCTTTTTA 58.148 33.333 0.00 0.00 42.97 1.52
311 312 6.286758 TGGTGCAAATTCAGATGCTTTTTAA 58.713 32.000 0.00 0.00 42.97 1.52
312 313 6.765036 TGGTGCAAATTCAGATGCTTTTTAAA 59.235 30.769 0.00 0.00 42.97 1.52
313 314 7.281774 TGGTGCAAATTCAGATGCTTTTTAAAA 59.718 29.630 0.00 0.00 42.97 1.52
314 315 8.291740 GGTGCAAATTCAGATGCTTTTTAAAAT 58.708 29.630 0.55 0.00 42.97 1.82
376 377 9.699410 ATGTTATACATGAAAATCCCTCAGAAA 57.301 29.630 0.00 0.00 37.45 2.52
377 378 9.527157 TGTTATACATGAAAATCCCTCAGAAAA 57.473 29.630 0.00 0.00 0.00 2.29
381 382 7.307131 ACATGAAAATCCCTCAGAAAAATGT 57.693 32.000 0.00 0.00 0.00 2.71
382 383 7.156673 ACATGAAAATCCCTCAGAAAAATGTG 58.843 34.615 0.00 0.00 0.00 3.21
383 384 6.729690 TGAAAATCCCTCAGAAAAATGTGT 57.270 33.333 0.00 0.00 0.00 3.72
384 385 7.831691 TGAAAATCCCTCAGAAAAATGTGTA 57.168 32.000 0.00 0.00 0.00 2.90
385 386 7.885297 TGAAAATCCCTCAGAAAAATGTGTAG 58.115 34.615 0.00 0.00 0.00 2.74
386 387 7.723616 TGAAAATCCCTCAGAAAAATGTGTAGA 59.276 33.333 0.00 0.00 0.00 2.59
387 388 8.655935 AAAATCCCTCAGAAAAATGTGTAGAT 57.344 30.769 0.00 0.00 0.00 1.98
388 389 8.655935 AAATCCCTCAGAAAAATGTGTAGATT 57.344 30.769 0.00 0.00 0.00 2.40
389 390 8.655935 AATCCCTCAGAAAAATGTGTAGATTT 57.344 30.769 0.00 0.00 0.00 2.17
390 391 8.655935 ATCCCTCAGAAAAATGTGTAGATTTT 57.344 30.769 0.00 0.00 37.16 1.82
391 392 9.753674 ATCCCTCAGAAAAATGTGTAGATTTTA 57.246 29.630 0.89 0.00 35.01 1.52
392 393 9.581289 TCCCTCAGAAAAATGTGTAGATTTTAA 57.419 29.630 0.89 0.00 35.01 1.52
486 487 9.807921 TCTTTATATGGGTATTCTGGAAAATCC 57.192 33.333 0.00 0.00 36.96 3.01
487 488 9.813826 CTTTATATGGGTATTCTGGAAAATCCT 57.186 33.333 0.00 0.00 37.46 3.24
490 491 6.848562 ATGGGTATTCTGGAAAATCCTACT 57.151 37.500 0.00 0.00 37.46 2.57
491 492 6.248569 TGGGTATTCTGGAAAATCCTACTC 57.751 41.667 0.00 0.00 37.46 2.59
492 493 5.132144 TGGGTATTCTGGAAAATCCTACTCC 59.868 44.000 0.00 0.00 37.46 3.85
493 494 5.456330 GGGTATTCTGGAAAATCCTACTCCC 60.456 48.000 0.00 0.00 37.46 4.30
494 495 5.369993 GGTATTCTGGAAAATCCTACTCCCT 59.630 44.000 0.00 0.00 37.46 4.20
495 496 5.638530 ATTCTGGAAAATCCTACTCCCTC 57.361 43.478 0.00 0.00 37.46 4.30
496 497 3.385115 TCTGGAAAATCCTACTCCCTCC 58.615 50.000 0.00 0.00 37.46 4.30
497 498 2.103263 CTGGAAAATCCTACTCCCTCCG 59.897 54.545 0.00 0.00 37.46 4.63
498 499 2.117051 GGAAAATCCTACTCCCTCCGT 58.883 52.381 0.00 0.00 32.53 4.69
499 500 2.504585 GGAAAATCCTACTCCCTCCGTT 59.495 50.000 0.00 0.00 32.53 4.44
500 501 3.054582 GGAAAATCCTACTCCCTCCGTTT 60.055 47.826 0.00 0.00 32.53 3.60
501 502 3.908643 AAATCCTACTCCCTCCGTTTC 57.091 47.619 0.00 0.00 0.00 2.78
502 503 2.544844 ATCCTACTCCCTCCGTTTCA 57.455 50.000 0.00 0.00 0.00 2.69
503 504 2.314071 TCCTACTCCCTCCGTTTCAA 57.686 50.000 0.00 0.00 0.00 2.69
504 505 2.612000 TCCTACTCCCTCCGTTTCAAA 58.388 47.619 0.00 0.00 0.00 2.69
505 506 2.974099 TCCTACTCCCTCCGTTTCAAAA 59.026 45.455 0.00 0.00 0.00 2.44
506 507 3.585732 TCCTACTCCCTCCGTTTCAAAAT 59.414 43.478 0.00 0.00 0.00 1.82
507 508 4.778958 TCCTACTCCCTCCGTTTCAAAATA 59.221 41.667 0.00 0.00 0.00 1.40
508 509 5.248934 TCCTACTCCCTCCGTTTCAAAATAA 59.751 40.000 0.00 0.00 0.00 1.40
509 510 5.585047 CCTACTCCCTCCGTTTCAAAATAAG 59.415 44.000 0.00 0.00 0.00 1.73
510 511 4.981812 ACTCCCTCCGTTTCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
511 512 4.760204 ACTCCCTCCGTTTCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
512 513 4.975631 TCCCTCCGTTTCAAAATAAGTGA 58.024 39.130 0.00 0.00 0.00 3.41
513 514 4.758165 TCCCTCCGTTTCAAAATAAGTGAC 59.242 41.667 0.00 0.00 0.00 3.67
514 515 4.760204 CCCTCCGTTTCAAAATAAGTGACT 59.240 41.667 0.00 0.00 0.00 3.41
515 516 5.106673 CCCTCCGTTTCAAAATAAGTGACTC 60.107 44.000 0.00 0.00 0.00 3.36
516 517 5.468746 CCTCCGTTTCAAAATAAGTGACTCA 59.531 40.000 0.00 0.00 0.00 3.41
517 518 6.017440 CCTCCGTTTCAAAATAAGTGACTCAA 60.017 38.462 0.00 0.00 0.00 3.02
518 519 6.721321 TCCGTTTCAAAATAAGTGACTCAAC 58.279 36.000 0.00 0.00 0.00 3.18
519 520 6.540914 TCCGTTTCAAAATAAGTGACTCAACT 59.459 34.615 0.00 0.00 0.00 3.16
520 521 7.066525 TCCGTTTCAAAATAAGTGACTCAACTT 59.933 33.333 0.00 0.00 42.89 2.66
521 522 7.700656 CCGTTTCAAAATAAGTGACTCAACTTT 59.299 33.333 0.00 0.00 40.77 2.66
522 523 8.523464 CGTTTCAAAATAAGTGACTCAACTTTG 58.477 33.333 0.00 0.00 40.77 2.77
523 524 9.353999 GTTTCAAAATAAGTGACTCAACTTTGT 57.646 29.630 0.00 0.00 40.77 2.83
525 526 9.997482 TTCAAAATAAGTGACTCAACTTTGTAC 57.003 29.630 0.00 0.00 40.77 2.90
526 527 9.391006 TCAAAATAAGTGACTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
532 533 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
533 534 8.197988 AGTGACTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
534 535 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
535 536 9.090692 GTGACTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
536 537 9.309516 TGACTCAACTTTGTACTAACTTTGTAG 57.690 33.333 0.00 1.27 0.00 2.74
537 538 9.310716 GACTCAACTTTGTACTAACTTTGTAGT 57.689 33.333 0.00 3.86 37.98 2.73
543 544 9.828039 ACTTTGTACTAACTTTGTAGTAAAGCT 57.172 29.630 13.75 0.00 38.10 3.74
558 559 9.903682 TGTAGTAAAGCTAGTAGTACAAAGTTG 57.096 33.333 16.96 0.00 35.44 3.16
561 562 8.858094 AGTAAAGCTAGTAGTACAAAGTTGAGT 58.142 33.333 2.52 0.00 0.00 3.41
562 563 9.127006 GTAAAGCTAGTAGTACAAAGTTGAGTC 57.873 37.037 2.52 0.00 0.00 3.36
563 564 6.896021 AGCTAGTAGTACAAAGTTGAGTCA 57.104 37.500 2.52 0.00 0.00 3.41
564 565 6.679843 AGCTAGTAGTACAAAGTTGAGTCAC 58.320 40.000 2.52 0.00 0.00 3.67
565 566 6.490721 AGCTAGTAGTACAAAGTTGAGTCACT 59.509 38.462 2.52 0.00 0.00 3.41
566 567 7.014422 AGCTAGTAGTACAAAGTTGAGTCACTT 59.986 37.037 2.52 0.00 38.74 3.16
567 568 8.295288 GCTAGTAGTACAAAGTTGAGTCACTTA 58.705 37.037 2.52 0.00 35.87 2.24
573 574 9.391006 AGTACAAAGTTGAGTCACTTATTTTGA 57.609 29.630 14.62 1.37 35.87 2.69
574 575 9.651718 GTACAAAGTTGAGTCACTTATTTTGAG 57.348 33.333 14.62 0.00 35.87 3.02
575 576 8.506168 ACAAAGTTGAGTCACTTATTTTGAGA 57.494 30.769 14.62 0.00 35.87 3.27
576 577 9.125026 ACAAAGTTGAGTCACTTATTTTGAGAT 57.875 29.630 14.62 0.00 35.87 2.75
580 581 9.868277 AGTTGAGTCACTTATTTTGAGATAGAG 57.132 33.333 0.00 0.00 0.00 2.43
581 582 9.092876 GTTGAGTCACTTATTTTGAGATAGAGG 57.907 37.037 0.00 0.00 0.00 3.69
582 583 7.268586 TGAGTCACTTATTTTGAGATAGAGGC 58.731 38.462 0.00 0.00 0.00 4.70
583 584 7.093333 TGAGTCACTTATTTTGAGATAGAGGCA 60.093 37.037 0.00 0.00 0.00 4.75
584 585 7.044798 AGTCACTTATTTTGAGATAGAGGCAC 58.955 38.462 0.00 0.00 0.00 5.01
586 587 8.198109 GTCACTTATTTTGAGATAGAGGCACTA 58.802 37.037 0.00 0.00 41.55 2.74
587 588 8.928448 TCACTTATTTTGAGATAGAGGCACTAT 58.072 33.333 4.01 4.01 41.55 2.12
588 589 9.553064 CACTTATTTTGAGATAGAGGCACTATT 57.447 33.333 5.92 0.00 41.55 1.73
596 597 8.885693 TGAGATAGAGGCACTATTACATATGT 57.114 34.615 13.93 13.93 41.55 2.29
597 598 9.314133 TGAGATAGAGGCACTATTACATATGTT 57.686 33.333 14.77 0.00 41.55 2.71
604 605 9.379791 GAGGCACTATTACATATGTTTATACCC 57.620 37.037 14.77 7.21 41.55 3.69
605 606 8.326529 AGGCACTATTACATATGTTTATACCCC 58.673 37.037 14.77 7.94 36.02 4.95
606 607 8.104566 GGCACTATTACATATGTTTATACCCCA 58.895 37.037 14.77 0.00 0.00 4.96
607 608 9.681062 GCACTATTACATATGTTTATACCCCAT 57.319 33.333 14.77 0.00 0.00 4.00
615 616 9.393786 ACATATGTTTATACCCCATTACTCTCT 57.606 33.333 1.41 0.00 0.00 3.10
652 653 9.214953 CTTTATATAGTTTTCAGAAAAGCTGCG 57.785 33.333 8.67 0.00 44.52 5.18
653 654 2.781945 AGTTTTCAGAAAAGCTGCGG 57.218 45.000 8.67 0.00 44.52 5.69
654 655 1.338020 AGTTTTCAGAAAAGCTGCGGG 59.662 47.619 8.67 0.00 44.52 6.13
655 656 1.067060 GTTTTCAGAAAAGCTGCGGGT 59.933 47.619 8.67 0.00 44.52 5.28
656 657 0.667993 TTTCAGAAAAGCTGCGGGTG 59.332 50.000 0.00 0.00 44.52 4.61
657 658 1.172180 TTCAGAAAAGCTGCGGGTGG 61.172 55.000 0.00 0.00 44.52 4.61
658 659 1.898574 CAGAAAAGCTGCGGGTGGT 60.899 57.895 0.00 0.00 37.90 4.16
659 660 1.898574 AGAAAAGCTGCGGGTGGTG 60.899 57.895 0.00 0.00 0.00 4.17
660 661 3.558099 GAAAAGCTGCGGGTGGTGC 62.558 63.158 0.00 0.00 0.00 5.01
674 675 1.800681 GGTGCGACCAATGCTTACC 59.199 57.895 0.00 0.00 38.42 2.85
675 676 1.654023 GGTGCGACCAATGCTTACCC 61.654 60.000 0.00 0.00 38.42 3.69
676 677 0.676782 GTGCGACCAATGCTTACCCT 60.677 55.000 0.00 0.00 0.00 4.34
677 678 0.906066 TGCGACCAATGCTTACCCTA 59.094 50.000 0.00 0.00 0.00 3.53
678 679 1.488812 TGCGACCAATGCTTACCCTAT 59.511 47.619 0.00 0.00 0.00 2.57
679 680 2.092646 TGCGACCAATGCTTACCCTATT 60.093 45.455 0.00 0.00 0.00 1.73
680 681 2.949644 GCGACCAATGCTTACCCTATTT 59.050 45.455 0.00 0.00 0.00 1.40
681 682 3.380320 GCGACCAATGCTTACCCTATTTT 59.620 43.478 0.00 0.00 0.00 1.82
682 683 4.142249 GCGACCAATGCTTACCCTATTTTT 60.142 41.667 0.00 0.00 0.00 1.94
709 710 5.407407 TTTTTGTGTGTGTGGGTGTATTT 57.593 34.783 0.00 0.00 0.00 1.40
710 711 4.377839 TTTGTGTGTGTGGGTGTATTTG 57.622 40.909 0.00 0.00 0.00 2.32
711 712 1.678627 TGTGTGTGTGGGTGTATTTGC 59.321 47.619 0.00 0.00 0.00 3.68
734 735 4.976864 TGCATAGCCATCATGATTAGTGT 58.023 39.130 5.16 0.00 0.00 3.55
741 742 2.979814 TCATGATTAGTGTGGGTCGG 57.020 50.000 0.00 0.00 0.00 4.79
742 743 1.484653 TCATGATTAGTGTGGGTCGGG 59.515 52.381 0.00 0.00 0.00 5.14
826 852 5.175491 CGCAAGCAGCAAAAGAATAGAAAAA 59.825 36.000 0.00 0.00 46.13 1.94
903 949 2.278857 GGCGACGACGATGCTGAT 60.279 61.111 12.29 0.00 42.66 2.90
915 964 2.380365 TGCTGATGCAGAACCTCCT 58.620 52.632 0.00 0.00 45.31 3.69
917 966 0.809241 GCTGATGCAGAACCTCCTCG 60.809 60.000 0.00 0.00 39.41 4.63
922 971 1.048601 TGCAGAACCTCCTCGTCTTT 58.951 50.000 0.00 0.00 0.00 2.52
925 977 2.548067 GCAGAACCTCCTCGTCTTTTCA 60.548 50.000 0.00 0.00 0.00 2.69
931 983 2.159028 CCTCCTCGTCTTTTCATCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
1077 1171 3.578716 CTGTTCCTAGTCCTCTTGTTCCA 59.421 47.826 0.00 0.00 0.00 3.53
1079 1173 2.168496 TCCTAGTCCTCTTGTTCCACG 58.832 52.381 0.00 0.00 0.00 4.94
1136 1239 2.686915 GTTCGAGAATCCGAGGAAGGTA 59.313 50.000 0.00 0.00 39.90 3.08
1299 1429 0.601558 GGCGTTGACCTCTGTCTGTA 59.398 55.000 0.00 0.00 42.28 2.74
1473 1695 1.209019 TGCTCTGAGCTTCTTCCATCC 59.791 52.381 28.04 0.00 42.97 3.51
1634 1884 3.947834 CCAGTTCTTCAGACAAACCACTT 59.052 43.478 0.00 0.00 0.00 3.16
1635 1885 4.201950 CCAGTTCTTCAGACAAACCACTTG 60.202 45.833 0.00 0.00 41.19 3.16
1636 1886 4.635765 CAGTTCTTCAGACAAACCACTTGA 59.364 41.667 0.00 0.00 38.50 3.02
1637 1887 4.878397 AGTTCTTCAGACAAACCACTTGAG 59.122 41.667 0.00 0.00 38.50 3.02
1843 2151 9.129532 TGACAATGGTTATTTGCATATGATGTA 57.870 29.630 6.97 0.00 0.00 2.29
1845 2153 9.917129 ACAATGGTTATTTGCATATGATGTATG 57.083 29.630 6.97 0.00 0.00 2.39
1846 2154 9.917129 CAATGGTTATTTGCATATGATGTATGT 57.083 29.630 6.97 0.00 0.00 2.29
1864 2189 3.120321 TGTATCAACCACTCACACACC 57.880 47.619 0.00 0.00 0.00 4.16
1893 2218 3.869065 CTTCTGCAAATGCCCATTCATT 58.131 40.909 2.46 0.00 41.18 2.57
1905 2232 3.325716 GCCCATTCATTAATGCCAGGATT 59.674 43.478 10.76 0.00 41.06 3.01
1912 2239 2.824689 TAATGCCAGGATTGAGCCAA 57.175 45.000 0.00 0.00 0.00 4.52
1956 2283 1.078214 CATCAGCCAGGCCGAGAAA 60.078 57.895 8.22 0.00 0.00 2.52
2028 2355 1.080025 GGTCTACACACAGACGCCC 60.080 63.158 0.00 0.00 44.93 6.13
2151 2478 4.357279 GGCAAGGAGGGTGCAGCT 62.357 66.667 16.65 1.37 44.07 4.24
2182 2509 2.203640 ACCACTGCCTCGTCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
2310 2637 0.107643 TCATGAACTCACGTGCCCAA 59.892 50.000 11.67 0.00 0.00 4.12
2433 2760 2.419673 TGATCAACATCGTGGTGCATTC 59.580 45.455 0.00 0.00 34.41 2.67
2436 2763 2.079158 CAACATCGTGGTGCATTCTCT 58.921 47.619 0.00 0.00 0.00 3.10
2686 3041 1.518367 GGTGGATATCAAGTGGGGGA 58.482 55.000 4.83 0.00 0.00 4.81
2853 3377 7.414540 GCAGATAGTTTCAAAGGATTCGTGATT 60.415 37.037 0.00 0.00 0.00 2.57
2869 3393 6.066054 TCGTGATTTGTCACAAAAATGCTA 57.934 33.333 7.14 0.00 40.42 3.49
2870 3394 5.912396 TCGTGATTTGTCACAAAAATGCTAC 59.088 36.000 7.14 0.33 40.42 3.58
2871 3395 5.914635 CGTGATTTGTCACAAAAATGCTACT 59.085 36.000 7.14 0.00 40.42 2.57
2872 3396 7.041712 TCGTGATTTGTCACAAAAATGCTACTA 60.042 33.333 7.14 0.00 40.42 1.82
2873 3397 7.059488 CGTGATTTGTCACAAAAATGCTACTAC 59.941 37.037 7.14 0.00 40.42 2.73
2874 3398 7.326063 GTGATTTGTCACAAAAATGCTACTACC 59.674 37.037 7.14 0.00 40.16 3.18
2875 3399 6.952773 TTTGTCACAAAAATGCTACTACCT 57.047 33.333 0.00 0.00 0.00 3.08
2876 3400 6.554334 TTGTCACAAAAATGCTACTACCTC 57.446 37.500 0.00 0.00 0.00 3.85
2877 3401 5.865085 TGTCACAAAAATGCTACTACCTCT 58.135 37.500 0.00 0.00 0.00 3.69
2878 3402 5.700832 TGTCACAAAAATGCTACTACCTCTG 59.299 40.000 0.00 0.00 0.00 3.35
2879 3403 5.122396 GTCACAAAAATGCTACTACCTCTGG 59.878 44.000 0.00 0.00 0.00 3.86
2880 3404 5.012664 TCACAAAAATGCTACTACCTCTGGA 59.987 40.000 0.00 0.00 0.00 3.86
2881 3405 5.122396 CACAAAAATGCTACTACCTCTGGAC 59.878 44.000 0.00 0.00 0.00 4.02
2882 3406 5.013183 ACAAAAATGCTACTACCTCTGGACT 59.987 40.000 0.00 0.00 0.00 3.85
2883 3407 5.763876 AAAATGCTACTACCTCTGGACTT 57.236 39.130 0.00 0.00 0.00 3.01
2884 3408 4.744795 AATGCTACTACCTCTGGACTTG 57.255 45.455 0.00 0.00 0.00 3.16
2885 3409 3.170991 TGCTACTACCTCTGGACTTGT 57.829 47.619 0.00 0.00 0.00 3.16
2886 3410 3.507411 TGCTACTACCTCTGGACTTGTT 58.493 45.455 0.00 0.00 0.00 2.83
2887 3411 3.901844 TGCTACTACCTCTGGACTTGTTT 59.098 43.478 0.00 0.00 0.00 2.83
2888 3412 4.347000 TGCTACTACCTCTGGACTTGTTTT 59.653 41.667 0.00 0.00 0.00 2.43
2889 3413 5.163237 TGCTACTACCTCTGGACTTGTTTTT 60.163 40.000 0.00 0.00 0.00 1.94
2890 3414 5.408909 GCTACTACCTCTGGACTTGTTTTTC 59.591 44.000 0.00 0.00 0.00 2.29
2891 3415 5.632034 ACTACCTCTGGACTTGTTTTTCT 57.368 39.130 0.00 0.00 0.00 2.52
2892 3416 6.002653 ACTACCTCTGGACTTGTTTTTCTT 57.997 37.500 0.00 0.00 0.00 2.52
2893 3417 6.424032 ACTACCTCTGGACTTGTTTTTCTTT 58.576 36.000 0.00 0.00 0.00 2.52
2894 3418 5.582689 ACCTCTGGACTTGTTTTTCTTTG 57.417 39.130 0.00 0.00 0.00 2.77
2895 3419 5.016831 ACCTCTGGACTTGTTTTTCTTTGT 58.983 37.500 0.00 0.00 0.00 2.83
2896 3420 5.125578 ACCTCTGGACTTGTTTTTCTTTGTC 59.874 40.000 0.00 0.00 0.00 3.18
2897 3421 5.125417 CCTCTGGACTTGTTTTTCTTTGTCA 59.875 40.000 0.00 0.00 0.00 3.58
2898 3422 5.949735 TCTGGACTTGTTTTTCTTTGTCAC 58.050 37.500 0.00 0.00 0.00 3.67
2899 3423 5.475220 TCTGGACTTGTTTTTCTTTGTCACA 59.525 36.000 0.00 0.00 0.00 3.58
2900 3424 6.015856 TCTGGACTTGTTTTTCTTTGTCACAA 60.016 34.615 0.00 0.00 0.00 3.33
2901 3425 6.516718 TGGACTTGTTTTTCTTTGTCACAAA 58.483 32.000 2.24 2.24 0.00 2.83
2902 3426 6.986817 TGGACTTGTTTTTCTTTGTCACAAAA 59.013 30.769 4.13 0.00 0.00 2.44
2903 3427 7.495934 TGGACTTGTTTTTCTTTGTCACAAAAA 59.504 29.630 4.13 0.00 0.00 1.94
2904 3428 7.796660 GGACTTGTTTTTCTTTGTCACAAAAAC 59.203 33.333 4.13 6.52 44.70 2.43
2905 3429 7.341446 ACTTGTTTTTCTTTGTCACAAAAACG 58.659 30.769 4.13 0.00 46.24 3.60
2906 3430 6.830114 TGTTTTTCTTTGTCACAAAAACGT 57.170 29.167 4.13 0.00 46.24 3.99
2907 3431 6.868430 TGTTTTTCTTTGTCACAAAAACGTC 58.132 32.000 4.13 0.00 46.24 4.34
2908 3432 6.697892 TGTTTTTCTTTGTCACAAAAACGTCT 59.302 30.769 4.13 0.00 46.24 4.18
2909 3433 6.683090 TTTTCTTTGTCACAAAAACGTCTG 57.317 33.333 4.13 0.00 0.00 3.51
2910 3434 4.349663 TCTTTGTCACAAAAACGTCTGG 57.650 40.909 4.13 0.00 0.00 3.86
2911 3435 4.004314 TCTTTGTCACAAAAACGTCTGGA 58.996 39.130 4.13 0.00 0.00 3.86
2912 3436 4.094294 TCTTTGTCACAAAAACGTCTGGAG 59.906 41.667 4.13 0.00 0.00 3.86
2913 3437 2.980568 TGTCACAAAAACGTCTGGAGT 58.019 42.857 0.00 0.00 0.00 3.85
3046 3843 3.123804 GAGTGCCATTATCGTGTACCAG 58.876 50.000 0.00 0.00 0.00 4.00
3095 3892 5.994668 TCTATGAAACATAGTGTTGTGTGCA 59.005 36.000 15.34 0.00 40.14 4.57
3103 3900 0.378257 GTGTTGTGTGCACAGACAGG 59.622 55.000 27.32 0.00 42.94 4.00
3331 4148 7.474079 GCCATCTTAATGAGGTTTCCTAGAGAT 60.474 40.741 0.00 0.00 34.61 2.75
3332 4149 8.435982 CCATCTTAATGAGGTTTCCTAGAGATT 58.564 37.037 0.00 0.00 34.61 2.40
3431 4248 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
3433 4250 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
3441 4258 6.472163 CGTCCCACAATATAAGATGTTTTTGC 59.528 38.462 0.00 0.00 0.00 3.68
3453 4270 9.793252 ATAAGATGTTTTTGCAAGCTAACATAG 57.207 29.630 24.36 0.00 40.29 2.23
3481 4298 5.798434 GCAAAAACGTCTTATATTGTGGGAC 59.202 40.000 0.00 0.00 0.00 4.46
3557 4374 8.722480 TCAGATAGATATTGTGGTTTGTCTTG 57.278 34.615 0.00 0.00 0.00 3.02
3559 4376 8.824781 CAGATAGATATTGTGGTTTGTCTTGAG 58.175 37.037 0.00 0.00 0.00 3.02
3572 4389 6.374578 GTTTGTCTTGAGTTGAAGATTAGGC 58.625 40.000 0.00 0.00 34.50 3.93
3584 4401 8.718656 AGTTGAAGATTAGGCCTACTTAATGAT 58.281 33.333 13.46 0.46 0.00 2.45
3593 4410 9.832445 TTAGGCCTACTTAATGATAAGACAAAG 57.168 33.333 13.46 0.00 40.90 2.77
3626 4443 8.311650 TCTTCACTAAAGTTGTAGCTCATTTC 57.688 34.615 0.00 0.00 36.31 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.946329 ACCACACACACGCATAGAAAAA 59.054 40.909 0.00 0.00 0.00 1.94
8 9 2.566913 ACCACACACACGCATAGAAAA 58.433 42.857 0.00 0.00 0.00 2.29
9 10 2.248280 ACCACACACACGCATAGAAA 57.752 45.000 0.00 0.00 0.00 2.52
10 11 2.248280 AACCACACACACGCATAGAA 57.752 45.000 0.00 0.00 0.00 2.10
11 12 1.870402 CAAACCACACACACGCATAGA 59.130 47.619 0.00 0.00 0.00 1.98
12 13 1.601903 ACAAACCACACACACGCATAG 59.398 47.619 0.00 0.00 0.00 2.23
13 14 1.669604 ACAAACCACACACACGCATA 58.330 45.000 0.00 0.00 0.00 3.14
14 15 0.814457 AACAAACCACACACACGCAT 59.186 45.000 0.00 0.00 0.00 4.73
15 16 1.450025 TAACAAACCACACACACGCA 58.550 45.000 0.00 0.00 0.00 5.24
16 17 2.178783 GTTAACAAACCACACACACGC 58.821 47.619 0.00 0.00 0.00 5.34
17 18 2.432856 CGTTAACAAACCACACACACG 58.567 47.619 6.39 0.00 0.00 4.49
18 19 2.478200 CCCGTTAACAAACCACACACAC 60.478 50.000 6.39 0.00 0.00 3.82
19 20 1.743958 CCCGTTAACAAACCACACACA 59.256 47.619 6.39 0.00 0.00 3.72
20 21 1.744522 ACCCGTTAACAAACCACACAC 59.255 47.619 6.39 0.00 0.00 3.82
21 22 2.125773 ACCCGTTAACAAACCACACA 57.874 45.000 6.39 0.00 0.00 3.72
22 23 2.479901 CCAACCCGTTAACAAACCACAC 60.480 50.000 6.39 0.00 0.00 3.82
23 24 1.749634 CCAACCCGTTAACAAACCACA 59.250 47.619 6.39 0.00 0.00 4.17
24 25 1.750206 ACCAACCCGTTAACAAACCAC 59.250 47.619 6.39 0.00 0.00 4.16
25 26 2.140839 ACCAACCCGTTAACAAACCA 57.859 45.000 6.39 0.00 0.00 3.67
26 27 3.004629 CCTAACCAACCCGTTAACAAACC 59.995 47.826 6.39 0.00 0.00 3.27
27 28 3.550639 GCCTAACCAACCCGTTAACAAAC 60.551 47.826 6.39 0.00 0.00 2.93
28 29 2.622470 GCCTAACCAACCCGTTAACAAA 59.378 45.455 6.39 0.00 0.00 2.83
29 30 2.228925 GCCTAACCAACCCGTTAACAA 58.771 47.619 6.39 0.00 0.00 2.83
30 31 1.877258 CGCCTAACCAACCCGTTAACA 60.877 52.381 6.39 0.00 0.00 2.41
31 32 0.798159 CGCCTAACCAACCCGTTAAC 59.202 55.000 0.00 0.00 0.00 2.01
32 33 0.321475 CCGCCTAACCAACCCGTTAA 60.321 55.000 0.00 0.00 0.00 2.01
33 34 1.296068 CCGCCTAACCAACCCGTTA 59.704 57.895 0.00 0.00 0.00 3.18
34 35 2.032987 CCGCCTAACCAACCCGTT 59.967 61.111 0.00 0.00 0.00 4.44
35 36 4.710167 GCCGCCTAACCAACCCGT 62.710 66.667 0.00 0.00 0.00 5.28
39 40 2.801483 TAACGGGCCGCCTAACCAAC 62.801 60.000 28.71 0.00 0.00 3.77
40 41 2.524951 CTAACGGGCCGCCTAACCAA 62.525 60.000 28.71 1.26 0.00 3.67
41 42 3.001994 TAACGGGCCGCCTAACCA 61.002 61.111 28.71 0.00 0.00 3.67
42 43 2.202974 CTAACGGGCCGCCTAACC 60.203 66.667 28.71 0.00 0.00 2.85
43 44 2.202974 CCTAACGGGCCGCCTAAC 60.203 66.667 28.71 0.00 0.00 2.34
44 45 2.684655 ACCTAACGGGCCGCCTAA 60.685 61.111 28.71 7.96 39.10 2.69
45 46 2.852563 TACACCTAACGGGCCGCCTA 62.853 60.000 28.71 16.86 39.10 3.93
47 48 3.773404 TACACCTAACGGGCCGCC 61.773 66.667 28.71 0.00 39.10 6.13
48 49 2.510012 GTACACCTAACGGGCCGC 60.510 66.667 28.71 1.51 39.10 6.53
49 50 1.153706 CTGTACACCTAACGGGCCG 60.154 63.158 27.06 27.06 39.10 6.13
50 51 1.219935 CCTGTACACCTAACGGGCC 59.780 63.158 0.00 0.00 36.61 5.80
51 52 0.108472 GTCCTGTACACCTAACGGGC 60.108 60.000 0.00 0.00 42.25 6.13
52 53 0.171903 CGTCCTGTACACCTAACGGG 59.828 60.000 0.00 0.00 43.63 5.28
53 54 0.171903 CCGTCCTGTACACCTAACGG 59.828 60.000 15.15 15.15 42.97 4.44
54 55 0.171903 CCCGTCCTGTACACCTAACG 59.828 60.000 0.00 0.00 0.00 3.18
55 56 0.533951 CCCCGTCCTGTACACCTAAC 59.466 60.000 0.00 0.00 0.00 2.34
56 57 1.259840 GCCCCGTCCTGTACACCTAA 61.260 60.000 0.00 0.00 0.00 2.69
57 58 1.683365 GCCCCGTCCTGTACACCTA 60.683 63.158 0.00 0.00 0.00 3.08
58 59 3.001406 GCCCCGTCCTGTACACCT 61.001 66.667 0.00 0.00 0.00 4.00
59 60 4.446413 CGCCCCGTCCTGTACACC 62.446 72.222 0.00 0.00 0.00 4.16
61 62 3.942377 TAGCGCCCCGTCCTGTACA 62.942 63.158 2.29 0.00 0.00 2.90
62 63 3.142838 TAGCGCCCCGTCCTGTAC 61.143 66.667 2.29 0.00 0.00 2.90
63 64 3.142838 GTAGCGCCCCGTCCTGTA 61.143 66.667 2.29 0.00 0.00 2.74
65 66 4.814294 GTGTAGCGCCCCGTCCTG 62.814 72.222 2.29 0.00 0.00 3.86
67 68 3.675619 AATGTGTAGCGCCCCGTCC 62.676 63.158 2.29 0.00 0.00 4.79
68 69 2.125269 AATGTGTAGCGCCCCGTC 60.125 61.111 2.29 0.00 0.00 4.79
69 70 2.125269 GAATGTGTAGCGCCCCGT 60.125 61.111 2.29 0.00 0.00 5.28
70 71 3.261951 CGAATGTGTAGCGCCCCG 61.262 66.667 2.29 0.00 0.00 5.73
71 72 1.883084 CTCGAATGTGTAGCGCCCC 60.883 63.158 2.29 0.00 0.00 5.80
72 73 1.883084 CCTCGAATGTGTAGCGCCC 60.883 63.158 2.29 0.00 0.00 6.13
73 74 1.141019 TCCTCGAATGTGTAGCGCC 59.859 57.895 2.29 0.00 0.00 6.53
74 75 1.146358 GGTCCTCGAATGTGTAGCGC 61.146 60.000 0.00 0.00 0.00 5.92
75 76 0.172578 TGGTCCTCGAATGTGTAGCG 59.827 55.000 0.00 0.00 0.00 4.26
76 77 1.476891 TCTGGTCCTCGAATGTGTAGC 59.523 52.381 0.00 0.00 0.00 3.58
77 78 3.868757 TTCTGGTCCTCGAATGTGTAG 57.131 47.619 0.00 0.00 0.00 2.74
78 79 3.056107 CCTTTCTGGTCCTCGAATGTGTA 60.056 47.826 0.00 0.00 0.00 2.90
79 80 2.289694 CCTTTCTGGTCCTCGAATGTGT 60.290 50.000 0.00 0.00 0.00 3.72
80 81 2.350522 CCTTTCTGGTCCTCGAATGTG 58.649 52.381 0.00 0.00 0.00 3.21
81 82 1.339151 GCCTTTCTGGTCCTCGAATGT 60.339 52.381 0.00 0.00 38.35 2.71
82 83 1.065854 AGCCTTTCTGGTCCTCGAATG 60.066 52.381 0.00 0.00 38.35 2.67
83 84 1.065854 CAGCCTTTCTGGTCCTCGAAT 60.066 52.381 0.00 0.00 39.15 3.34
84 85 0.321671 CAGCCTTTCTGGTCCTCGAA 59.678 55.000 0.00 0.00 39.15 3.71
85 86 0.541998 TCAGCCTTTCTGGTCCTCGA 60.542 55.000 0.00 0.00 43.06 4.04
86 87 0.108424 CTCAGCCTTTCTGGTCCTCG 60.108 60.000 0.00 0.00 43.06 4.63
87 88 0.251634 CCTCAGCCTTTCTGGTCCTC 59.748 60.000 0.00 0.00 43.06 3.71
88 89 1.846712 GCCTCAGCCTTTCTGGTCCT 61.847 60.000 0.00 0.00 43.06 3.85
89 90 1.377856 GCCTCAGCCTTTCTGGTCC 60.378 63.158 0.00 0.00 43.06 4.46
90 91 0.957888 GTGCCTCAGCCTTTCTGGTC 60.958 60.000 0.00 0.00 43.06 4.02
91 92 1.073897 GTGCCTCAGCCTTTCTGGT 59.926 57.895 0.00 0.00 43.06 4.00
92 93 0.323178 ATGTGCCTCAGCCTTTCTGG 60.323 55.000 0.00 0.00 43.06 3.86
93 94 1.542492 AATGTGCCTCAGCCTTTCTG 58.458 50.000 0.00 0.00 44.21 3.02
94 95 2.299326 AAATGTGCCTCAGCCTTTCT 57.701 45.000 0.00 0.00 38.69 2.52
95 96 3.391506 AAAAATGTGCCTCAGCCTTTC 57.608 42.857 0.00 0.00 38.69 2.62
112 113 4.508861 CCTTACTCGTTTCAGGTCGAAAAA 59.491 41.667 0.00 0.00 45.11 1.94
113 114 4.053295 CCTTACTCGTTTCAGGTCGAAAA 58.947 43.478 0.00 0.00 45.11 2.29
114 115 3.318839 TCCTTACTCGTTTCAGGTCGAAA 59.681 43.478 0.00 0.00 41.40 3.46
115 116 2.886523 TCCTTACTCGTTTCAGGTCGAA 59.113 45.455 0.00 0.00 35.69 3.71
116 117 2.507484 TCCTTACTCGTTTCAGGTCGA 58.493 47.619 0.00 0.00 34.88 4.20
117 118 3.505464 ATCCTTACTCGTTTCAGGTCG 57.495 47.619 0.00 0.00 0.00 4.79
118 119 4.817517 TGAATCCTTACTCGTTTCAGGTC 58.182 43.478 0.00 0.00 0.00 3.85
119 120 4.527038 TCTGAATCCTTACTCGTTTCAGGT 59.473 41.667 10.16 0.00 42.14 4.00
120 121 4.865365 GTCTGAATCCTTACTCGTTTCAGG 59.135 45.833 10.16 0.00 42.14 3.86
121 122 4.559251 CGTCTGAATCCTTACTCGTTTCAG 59.441 45.833 4.93 4.93 42.84 3.02
122 123 4.482386 CGTCTGAATCCTTACTCGTTTCA 58.518 43.478 0.00 0.00 0.00 2.69
123 124 3.303760 GCGTCTGAATCCTTACTCGTTTC 59.696 47.826 0.00 0.00 0.00 2.78
124 125 3.056749 AGCGTCTGAATCCTTACTCGTTT 60.057 43.478 0.00 0.00 0.00 3.60
125 126 2.492484 AGCGTCTGAATCCTTACTCGTT 59.508 45.455 0.00 0.00 0.00 3.85
126 127 2.093106 AGCGTCTGAATCCTTACTCGT 58.907 47.619 0.00 0.00 0.00 4.18
127 128 2.853731 AGCGTCTGAATCCTTACTCG 57.146 50.000 0.00 0.00 0.00 4.18
128 129 5.864628 AAAAAGCGTCTGAATCCTTACTC 57.135 39.130 0.00 0.00 0.00 2.59
150 151 9.538508 GGTACTCAGTCTAAAGTTCAGTTTAAA 57.461 33.333 0.00 0.00 0.00 1.52
151 152 8.921205 AGGTACTCAGTCTAAAGTTCAGTTTAA 58.079 33.333 0.00 0.00 0.00 1.52
152 153 8.474710 AGGTACTCAGTCTAAAGTTCAGTTTA 57.525 34.615 0.00 0.00 0.00 2.01
153 154 7.362802 AGGTACTCAGTCTAAAGTTCAGTTT 57.637 36.000 0.00 0.00 0.00 2.66
154 155 6.980416 AGGTACTCAGTCTAAAGTTCAGTT 57.020 37.500 0.00 0.00 0.00 3.16
155 156 7.232910 ACTAGGTACTCAGTCTAAAGTTCAGT 58.767 38.462 0.00 0.00 41.75 3.41
156 157 7.690952 ACTAGGTACTCAGTCTAAAGTTCAG 57.309 40.000 0.00 0.00 41.75 3.02
157 158 8.159447 TGTACTAGGTACTCAGTCTAAAGTTCA 58.841 37.037 8.89 0.00 41.75 3.18
158 159 8.558973 TGTACTAGGTACTCAGTCTAAAGTTC 57.441 38.462 8.89 0.00 41.75 3.01
159 160 8.381636 TCTGTACTAGGTACTCAGTCTAAAGTT 58.618 37.037 8.89 0.00 41.75 2.66
160 161 7.823799 GTCTGTACTAGGTACTCAGTCTAAAGT 59.176 40.741 8.89 0.00 41.75 2.66
161 162 7.823310 TGTCTGTACTAGGTACTCAGTCTAAAG 59.177 40.741 8.89 0.00 41.75 1.85
162 163 7.683578 TGTCTGTACTAGGTACTCAGTCTAAA 58.316 38.462 8.89 0.00 41.75 1.85
163 164 7.250032 TGTCTGTACTAGGTACTCAGTCTAA 57.750 40.000 8.89 0.00 41.75 2.10
164 165 6.629963 GCTGTCTGTACTAGGTACTCAGTCTA 60.630 46.154 18.19 0.00 41.75 2.59
165 166 5.736813 CTGTCTGTACTAGGTACTCAGTCT 58.263 45.833 8.89 0.00 41.75 3.24
166 167 4.333372 GCTGTCTGTACTAGGTACTCAGTC 59.667 50.000 18.19 12.35 41.75 3.51
167 168 4.019141 AGCTGTCTGTACTAGGTACTCAGT 60.019 45.833 18.19 0.00 41.75 3.41
168 169 4.334203 CAGCTGTCTGTACTAGGTACTCAG 59.666 50.000 5.25 13.00 39.49 3.35
169 170 4.262617 CAGCTGTCTGTACTAGGTACTCA 58.737 47.826 5.25 5.55 39.49 3.41
170 171 4.886247 CAGCTGTCTGTACTAGGTACTC 57.114 50.000 5.25 2.06 39.49 2.59
182 183 3.599730 TCATAGGTTGACAGCTGTCTG 57.400 47.619 38.81 29.09 44.99 3.51
211 212 8.956533 TTTAAATTAGCTTCAGGTTGCTTTTT 57.043 26.923 0.00 0.00 40.35 1.94
212 213 8.956533 TTTTAAATTAGCTTCAGGTTGCTTTT 57.043 26.923 0.00 0.00 40.35 2.27
213 214 8.826710 GTTTTTAAATTAGCTTCAGGTTGCTTT 58.173 29.630 0.00 0.00 40.35 3.51
214 215 7.984617 TGTTTTTAAATTAGCTTCAGGTTGCTT 59.015 29.630 0.00 0.00 40.35 3.91
215 216 7.496747 TGTTTTTAAATTAGCTTCAGGTTGCT 58.503 30.769 0.00 0.00 42.67 3.91
216 217 7.651704 TCTGTTTTTAAATTAGCTTCAGGTTGC 59.348 33.333 0.00 0.00 0.00 4.17
217 218 8.968242 GTCTGTTTTTAAATTAGCTTCAGGTTG 58.032 33.333 0.00 0.00 0.00 3.77
218 219 8.691797 TGTCTGTTTTTAAATTAGCTTCAGGTT 58.308 29.630 0.00 0.00 0.00 3.50
219 220 8.232913 TGTCTGTTTTTAAATTAGCTTCAGGT 57.767 30.769 0.00 0.00 0.00 4.00
220 221 9.346725 GATGTCTGTTTTTAAATTAGCTTCAGG 57.653 33.333 0.00 0.00 0.00 3.86
222 223 9.897744 CAGATGTCTGTTTTTAAATTAGCTTCA 57.102 29.630 0.00 0.00 39.09 3.02
240 241 5.511545 GGGAGTGACTAAACAACAGATGTCT 60.512 44.000 0.00 0.00 42.99 3.41
241 242 4.691216 GGGAGTGACTAAACAACAGATGTC 59.309 45.833 0.00 0.00 42.99 3.06
242 243 4.348168 AGGGAGTGACTAAACAACAGATGT 59.652 41.667 0.00 0.00 46.82 3.06
243 244 4.899502 AGGGAGTGACTAAACAACAGATG 58.100 43.478 0.00 0.00 0.00 2.90
244 245 5.568620 AAGGGAGTGACTAAACAACAGAT 57.431 39.130 0.00 0.00 0.00 2.90
245 246 5.367945 AAAGGGAGTGACTAAACAACAGA 57.632 39.130 0.00 0.00 0.00 3.41
246 247 5.823045 AGAAAAGGGAGTGACTAAACAACAG 59.177 40.000 0.00 0.00 0.00 3.16
247 248 5.751586 AGAAAAGGGAGTGACTAAACAACA 58.248 37.500 0.00 0.00 0.00 3.33
248 249 6.694877 AAGAAAAGGGAGTGACTAAACAAC 57.305 37.500 0.00 0.00 0.00 3.32
249 250 7.712204 AAAAGAAAAGGGAGTGACTAAACAA 57.288 32.000 0.00 0.00 0.00 2.83
250 251 7.394923 TGAAAAAGAAAAGGGAGTGACTAAACA 59.605 33.333 0.00 0.00 0.00 2.83
251 252 7.701078 GTGAAAAAGAAAAGGGAGTGACTAAAC 59.299 37.037 0.00 0.00 0.00 2.01
252 253 7.614192 AGTGAAAAAGAAAAGGGAGTGACTAAA 59.386 33.333 0.00 0.00 0.00 1.85
253 254 7.116736 AGTGAAAAAGAAAAGGGAGTGACTAA 58.883 34.615 0.00 0.00 0.00 2.24
254 255 6.659824 AGTGAAAAAGAAAAGGGAGTGACTA 58.340 36.000 0.00 0.00 0.00 2.59
255 256 5.510430 AGTGAAAAAGAAAAGGGAGTGACT 58.490 37.500 0.00 0.00 0.00 3.41
256 257 5.836821 AGTGAAAAAGAAAAGGGAGTGAC 57.163 39.130 0.00 0.00 0.00 3.67
257 258 6.187682 AGAAGTGAAAAAGAAAAGGGAGTGA 58.812 36.000 0.00 0.00 0.00 3.41
258 259 6.319911 AGAGAAGTGAAAAAGAAAAGGGAGTG 59.680 38.462 0.00 0.00 0.00 3.51
259 260 6.427441 AGAGAAGTGAAAAAGAAAAGGGAGT 58.573 36.000 0.00 0.00 0.00 3.85
260 261 6.951062 AGAGAAGTGAAAAAGAAAAGGGAG 57.049 37.500 0.00 0.00 0.00 4.30
261 262 7.718334 AAAGAGAAGTGAAAAAGAAAAGGGA 57.282 32.000 0.00 0.00 0.00 4.20
262 263 8.659491 CAAAAAGAGAAGTGAAAAAGAAAAGGG 58.341 33.333 0.00 0.00 0.00 3.95
263 264 8.659491 CCAAAAAGAGAAGTGAAAAAGAAAAGG 58.341 33.333 0.00 0.00 0.00 3.11
264 265 9.208022 ACCAAAAAGAGAAGTGAAAAAGAAAAG 57.792 29.630 0.00 0.00 0.00 2.27
265 266 8.987890 CACCAAAAAGAGAAGTGAAAAAGAAAA 58.012 29.630 0.00 0.00 0.00 2.29
266 267 7.117667 GCACCAAAAAGAGAAGTGAAAAAGAAA 59.882 33.333 0.00 0.00 0.00 2.52
267 268 6.589907 GCACCAAAAAGAGAAGTGAAAAAGAA 59.410 34.615 0.00 0.00 0.00 2.52
268 269 6.099341 GCACCAAAAAGAGAAGTGAAAAAGA 58.901 36.000 0.00 0.00 0.00 2.52
269 270 5.868801 TGCACCAAAAAGAGAAGTGAAAAAG 59.131 36.000 0.00 0.00 0.00 2.27
270 271 5.788450 TGCACCAAAAAGAGAAGTGAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
271 272 5.398603 TGCACCAAAAAGAGAAGTGAAAA 57.601 34.783 0.00 0.00 0.00 2.29
272 273 5.398603 TTGCACCAAAAAGAGAAGTGAAA 57.601 34.783 0.00 0.00 0.00 2.69
273 274 5.398603 TTTGCACCAAAAAGAGAAGTGAA 57.601 34.783 0.00 0.00 29.89 3.18
274 275 5.596836 ATTTGCACCAAAAAGAGAAGTGA 57.403 34.783 0.00 0.00 36.90 3.41
275 276 5.811613 TGAATTTGCACCAAAAAGAGAAGTG 59.188 36.000 0.00 0.00 36.90 3.16
276 277 5.976458 TGAATTTGCACCAAAAAGAGAAGT 58.024 33.333 0.00 0.00 36.90 3.01
277 278 6.275335 TCTGAATTTGCACCAAAAAGAGAAG 58.725 36.000 0.00 0.00 36.90 2.85
278 279 6.219417 TCTGAATTTGCACCAAAAAGAGAA 57.781 33.333 0.00 0.00 36.90 2.87
279 280 5.850557 TCTGAATTTGCACCAAAAAGAGA 57.149 34.783 0.00 0.00 36.90 3.10
280 281 5.107220 GCATCTGAATTTGCACCAAAAAGAG 60.107 40.000 0.00 0.00 36.90 2.85
281 282 4.751098 GCATCTGAATTTGCACCAAAAAGA 59.249 37.500 0.00 0.45 36.90 2.52
282 283 4.753107 AGCATCTGAATTTGCACCAAAAAG 59.247 37.500 4.72 0.00 41.35 2.27
283 284 4.706035 AGCATCTGAATTTGCACCAAAAA 58.294 34.783 4.72 0.00 41.35 1.94
284 285 4.339872 AGCATCTGAATTTGCACCAAAA 57.660 36.364 4.72 0.00 41.35 2.44
285 286 4.339872 AAGCATCTGAATTTGCACCAAA 57.660 36.364 4.72 0.00 41.35 3.28
286 287 4.339872 AAAGCATCTGAATTTGCACCAA 57.660 36.364 4.72 0.00 41.35 3.67
287 288 4.339872 AAAAGCATCTGAATTTGCACCA 57.660 36.364 4.72 0.00 41.35 4.17
288 289 6.783892 TTAAAAAGCATCTGAATTTGCACC 57.216 33.333 4.72 0.00 41.35 5.01
350 351 9.699410 TTTCTGAGGGATTTTCATGTATAACAT 57.301 29.630 0.00 0.00 39.91 2.71
351 352 9.527157 TTTTCTGAGGGATTTTCATGTATAACA 57.473 29.630 0.00 0.00 0.00 2.41
355 356 9.039165 ACATTTTTCTGAGGGATTTTCATGTAT 57.961 29.630 0.00 0.00 0.00 2.29
356 357 8.306038 CACATTTTTCTGAGGGATTTTCATGTA 58.694 33.333 0.00 0.00 0.00 2.29
357 358 7.156673 CACATTTTTCTGAGGGATTTTCATGT 58.843 34.615 0.00 0.00 0.00 3.21
358 359 7.156673 ACACATTTTTCTGAGGGATTTTCATG 58.843 34.615 0.00 0.00 0.00 3.07
359 360 7.307131 ACACATTTTTCTGAGGGATTTTCAT 57.693 32.000 0.00 0.00 0.00 2.57
360 361 6.729690 ACACATTTTTCTGAGGGATTTTCA 57.270 33.333 0.00 0.00 0.00 2.69
361 362 8.110860 TCTACACATTTTTCTGAGGGATTTTC 57.889 34.615 0.00 0.00 0.00 2.29
362 363 8.655935 ATCTACACATTTTTCTGAGGGATTTT 57.344 30.769 0.00 0.00 0.00 1.82
363 364 8.655935 AATCTACACATTTTTCTGAGGGATTT 57.344 30.769 0.00 0.00 0.00 2.17
364 365 8.655935 AAATCTACACATTTTTCTGAGGGATT 57.344 30.769 0.00 0.00 0.00 3.01
365 366 8.655935 AAAATCTACACATTTTTCTGAGGGAT 57.344 30.769 0.00 0.00 33.02 3.85
366 367 9.581289 TTAAAATCTACACATTTTTCTGAGGGA 57.419 29.630 0.00 0.00 37.23 4.20
460 461 9.807921 GGATTTTCCAGAATACCCATATAAAGA 57.192 33.333 0.00 0.00 36.28 2.52
461 462 9.813826 AGGATTTTCCAGAATACCCATATAAAG 57.186 33.333 0.00 0.00 39.61 1.85
464 465 9.629649 AGTAGGATTTTCCAGAATACCCATATA 57.370 33.333 0.00 0.00 39.61 0.86
465 466 8.525729 AGTAGGATTTTCCAGAATACCCATAT 57.474 34.615 0.00 0.00 39.61 1.78
466 467 7.017254 GGAGTAGGATTTTCCAGAATACCCATA 59.983 40.741 0.00 0.00 39.61 2.74
467 468 6.183361 GGAGTAGGATTTTCCAGAATACCCAT 60.183 42.308 0.00 0.00 39.61 4.00
468 469 5.132144 GGAGTAGGATTTTCCAGAATACCCA 59.868 44.000 0.00 0.00 39.61 4.51
469 470 5.456330 GGGAGTAGGATTTTCCAGAATACCC 60.456 48.000 0.00 0.00 39.61 3.69
470 471 5.369993 AGGGAGTAGGATTTTCCAGAATACC 59.630 44.000 0.00 0.00 39.61 2.73
471 472 6.464607 GGAGGGAGTAGGATTTTCCAGAATAC 60.465 46.154 0.00 0.00 39.61 1.89
472 473 5.607171 GGAGGGAGTAGGATTTTCCAGAATA 59.393 44.000 0.00 0.00 39.61 1.75
473 474 4.413851 GGAGGGAGTAGGATTTTCCAGAAT 59.586 45.833 0.00 0.00 39.61 2.40
474 475 3.780850 GGAGGGAGTAGGATTTTCCAGAA 59.219 47.826 0.00 0.00 39.61 3.02
475 476 3.385115 GGAGGGAGTAGGATTTTCCAGA 58.615 50.000 0.00 0.00 39.61 3.86
476 477 2.103263 CGGAGGGAGTAGGATTTTCCAG 59.897 54.545 0.00 0.00 39.61 3.86
477 478 2.116238 CGGAGGGAGTAGGATTTTCCA 58.884 52.381 0.00 0.00 39.61 3.53
478 479 2.117051 ACGGAGGGAGTAGGATTTTCC 58.883 52.381 0.00 0.00 36.58 3.13
479 480 3.908643 AACGGAGGGAGTAGGATTTTC 57.091 47.619 0.00 0.00 0.00 2.29
480 481 3.585732 TGAAACGGAGGGAGTAGGATTTT 59.414 43.478 0.00 0.00 0.00 1.82
481 482 3.178865 TGAAACGGAGGGAGTAGGATTT 58.821 45.455 0.00 0.00 0.00 2.17
482 483 2.829023 TGAAACGGAGGGAGTAGGATT 58.171 47.619 0.00 0.00 0.00 3.01
483 484 2.544844 TGAAACGGAGGGAGTAGGAT 57.455 50.000 0.00 0.00 0.00 3.24
484 485 2.314071 TTGAAACGGAGGGAGTAGGA 57.686 50.000 0.00 0.00 0.00 2.94
485 486 3.412237 TTTTGAAACGGAGGGAGTAGG 57.588 47.619 0.00 0.00 0.00 3.18
486 487 6.092259 CACTTATTTTGAAACGGAGGGAGTAG 59.908 42.308 0.00 0.00 0.00 2.57
487 488 5.935789 CACTTATTTTGAAACGGAGGGAGTA 59.064 40.000 0.00 0.00 0.00 2.59
488 489 4.760204 CACTTATTTTGAAACGGAGGGAGT 59.240 41.667 0.00 0.00 0.00 3.85
489 490 5.001232 TCACTTATTTTGAAACGGAGGGAG 58.999 41.667 0.00 0.00 0.00 4.30
490 491 4.758165 GTCACTTATTTTGAAACGGAGGGA 59.242 41.667 0.00 0.00 0.00 4.20
491 492 4.760204 AGTCACTTATTTTGAAACGGAGGG 59.240 41.667 0.00 0.00 0.00 4.30
492 493 5.468746 TGAGTCACTTATTTTGAAACGGAGG 59.531 40.000 0.00 0.00 0.00 4.30
493 494 6.539649 TGAGTCACTTATTTTGAAACGGAG 57.460 37.500 0.00 0.00 0.00 4.63
494 495 6.540914 AGTTGAGTCACTTATTTTGAAACGGA 59.459 34.615 0.00 0.00 0.00 4.69
495 496 6.725246 AGTTGAGTCACTTATTTTGAAACGG 58.275 36.000 0.00 0.00 0.00 4.44
496 497 8.523464 CAAAGTTGAGTCACTTATTTTGAAACG 58.477 33.333 5.72 0.00 35.87 3.60
497 498 9.353999 ACAAAGTTGAGTCACTTATTTTGAAAC 57.646 29.630 14.62 0.00 35.87 2.78
499 500 9.997482 GTACAAAGTTGAGTCACTTATTTTGAA 57.003 29.630 14.62 0.00 35.87 2.69
500 501 9.391006 AGTACAAAGTTGAGTCACTTATTTTGA 57.609 29.630 14.62 1.37 35.87 2.69
506 507 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
507 508 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
508 509 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
509 510 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
510 511 9.309516 CTACAAAGTTAGTACAAAGTTGAGTCA 57.690 33.333 0.00 0.00 0.00 3.41
511 512 9.310716 ACTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 0.00 0.00 29.00 3.36
517 518 9.828039 AGCTTTACTACAAAGTTAGTACAAAGT 57.172 29.630 0.00 0.00 37.15 2.66
532 533 9.903682 CAACTTTGTACTACTAGCTTTACTACA 57.096 33.333 0.00 0.00 0.00 2.74
535 536 8.858094 ACTCAACTTTGTACTACTAGCTTTACT 58.142 33.333 0.00 0.00 0.00 2.24
536 537 9.127006 GACTCAACTTTGTACTACTAGCTTTAC 57.873 37.037 0.00 0.00 0.00 2.01
537 538 8.853126 TGACTCAACTTTGTACTACTAGCTTTA 58.147 33.333 0.00 0.00 0.00 1.85
538 539 7.652507 GTGACTCAACTTTGTACTACTAGCTTT 59.347 37.037 0.00 0.00 0.00 3.51
539 540 7.014422 AGTGACTCAACTTTGTACTACTAGCTT 59.986 37.037 0.00 0.00 0.00 3.74
540 541 6.490721 AGTGACTCAACTTTGTACTACTAGCT 59.509 38.462 0.00 0.00 0.00 3.32
541 542 6.679843 AGTGACTCAACTTTGTACTACTAGC 58.320 40.000 0.00 0.00 0.00 3.42
547 548 9.391006 TCAAAATAAGTGACTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
548 549 9.651718 CTCAAAATAAGTGACTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
549 550 9.607988 TCTCAAAATAAGTGACTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
550 551 8.506168 TCTCAAAATAAGTGACTCAACTTTGT 57.494 30.769 0.00 0.00 40.77 2.83
554 555 9.868277 CTCTATCTCAAAATAAGTGACTCAACT 57.132 33.333 0.00 0.00 0.00 3.16
555 556 9.092876 CCTCTATCTCAAAATAAGTGACTCAAC 57.907 37.037 0.00 0.00 0.00 3.18
556 557 7.766278 GCCTCTATCTCAAAATAAGTGACTCAA 59.234 37.037 0.00 0.00 0.00 3.02
557 558 7.093333 TGCCTCTATCTCAAAATAAGTGACTCA 60.093 37.037 0.00 0.00 0.00 3.41
558 559 7.223777 GTGCCTCTATCTCAAAATAAGTGACTC 59.776 40.741 0.00 0.00 0.00 3.36
559 560 7.044798 GTGCCTCTATCTCAAAATAAGTGACT 58.955 38.462 0.00 0.00 0.00 3.41
560 561 7.044798 AGTGCCTCTATCTCAAAATAAGTGAC 58.955 38.462 0.00 0.00 0.00 3.67
561 562 7.187824 AGTGCCTCTATCTCAAAATAAGTGA 57.812 36.000 0.00 0.00 0.00 3.41
562 563 9.553064 AATAGTGCCTCTATCTCAAAATAAGTG 57.447 33.333 0.16 0.00 38.29 3.16
570 571 9.314133 ACATATGTAATAGTGCCTCTATCTCAA 57.686 33.333 6.56 0.00 38.29 3.02
571 572 8.885693 ACATATGTAATAGTGCCTCTATCTCA 57.114 34.615 6.56 3.63 38.29 3.27
578 579 9.379791 GGGTATAAACATATGTAATAGTGCCTC 57.620 37.037 9.21 0.00 28.50 4.70
579 580 8.326529 GGGGTATAAACATATGTAATAGTGCCT 58.673 37.037 9.21 0.00 28.50 4.75
580 581 8.104566 TGGGGTATAAACATATGTAATAGTGCC 58.895 37.037 9.21 7.90 28.50 5.01
581 582 9.681062 ATGGGGTATAAACATATGTAATAGTGC 57.319 33.333 9.21 0.00 28.50 4.40
589 590 9.393786 AGAGAGTAATGGGGTATAAACATATGT 57.606 33.333 1.41 1.41 0.00 2.29
626 627 9.214953 CGCAGCTTTTCTGAAAACTATATAAAG 57.785 33.333 11.33 0.58 45.72 1.85
627 628 8.181573 CCGCAGCTTTTCTGAAAACTATATAAA 58.818 33.333 11.33 0.00 45.72 1.40
628 629 7.201696 CCCGCAGCTTTTCTGAAAACTATATAA 60.202 37.037 11.33 0.00 45.72 0.98
629 630 6.260050 CCCGCAGCTTTTCTGAAAACTATATA 59.740 38.462 11.33 0.00 45.72 0.86
630 631 5.066505 CCCGCAGCTTTTCTGAAAACTATAT 59.933 40.000 11.33 0.00 45.72 0.86
631 632 4.394920 CCCGCAGCTTTTCTGAAAACTATA 59.605 41.667 11.33 0.00 45.72 1.31
632 633 3.191371 CCCGCAGCTTTTCTGAAAACTAT 59.809 43.478 11.33 0.00 45.72 2.12
633 634 2.552315 CCCGCAGCTTTTCTGAAAACTA 59.448 45.455 11.33 0.00 45.72 2.24
634 635 1.338020 CCCGCAGCTTTTCTGAAAACT 59.662 47.619 11.33 10.69 45.72 2.66
635 636 1.067060 ACCCGCAGCTTTTCTGAAAAC 59.933 47.619 11.33 8.84 45.72 2.43
636 637 1.066908 CACCCGCAGCTTTTCTGAAAA 59.933 47.619 14.31 14.31 45.72 2.29
637 638 0.667993 CACCCGCAGCTTTTCTGAAA 59.332 50.000 0.00 0.00 45.72 2.69
638 639 1.172180 CCACCCGCAGCTTTTCTGAA 61.172 55.000 0.00 0.00 45.72 3.02
639 640 1.600636 CCACCCGCAGCTTTTCTGA 60.601 57.895 0.00 0.00 45.72 3.27
640 641 1.898574 ACCACCCGCAGCTTTTCTG 60.899 57.895 0.00 0.00 45.62 3.02
641 642 1.898574 CACCACCCGCAGCTTTTCT 60.899 57.895 0.00 0.00 0.00 2.52
642 643 2.644992 CACCACCCGCAGCTTTTC 59.355 61.111 0.00 0.00 0.00 2.29
643 644 3.605664 GCACCACCCGCAGCTTTT 61.606 61.111 0.00 0.00 0.00 2.27
656 657 1.654023 GGGTAAGCATTGGTCGCACC 61.654 60.000 5.95 5.95 39.22 5.01
657 658 0.676782 AGGGTAAGCATTGGTCGCAC 60.677 55.000 0.00 0.00 0.00 5.34
658 659 0.906066 TAGGGTAAGCATTGGTCGCA 59.094 50.000 0.00 0.00 0.00 5.10
659 660 2.256117 ATAGGGTAAGCATTGGTCGC 57.744 50.000 0.00 0.00 0.00 5.19
660 661 5.576447 AAAAATAGGGTAAGCATTGGTCG 57.424 39.130 0.00 0.00 0.00 4.79
687 688 5.171476 CAAATACACCCACACACACAAAAA 58.829 37.500 0.00 0.00 0.00 1.94
688 689 4.748892 CAAATACACCCACACACACAAAA 58.251 39.130 0.00 0.00 0.00 2.44
689 690 3.429547 GCAAATACACCCACACACACAAA 60.430 43.478 0.00 0.00 0.00 2.83
690 691 2.099921 GCAAATACACCCACACACACAA 59.900 45.455 0.00 0.00 0.00 3.33
691 692 1.678627 GCAAATACACCCACACACACA 59.321 47.619 0.00 0.00 0.00 3.72
692 693 1.953686 AGCAAATACACCCACACACAC 59.046 47.619 0.00 0.00 0.00 3.82
693 694 1.952990 CAGCAAATACACCCACACACA 59.047 47.619 0.00 0.00 0.00 3.72
694 695 1.335872 GCAGCAAATACACCCACACAC 60.336 52.381 0.00 0.00 0.00 3.82
695 696 0.958091 GCAGCAAATACACCCACACA 59.042 50.000 0.00 0.00 0.00 3.72
696 697 0.958091 TGCAGCAAATACACCCACAC 59.042 50.000 0.00 0.00 0.00 3.82
697 698 1.921982 ATGCAGCAAATACACCCACA 58.078 45.000 0.00 0.00 0.00 4.17
698 699 3.698029 CTATGCAGCAAATACACCCAC 57.302 47.619 0.00 0.00 0.00 4.61
711 712 5.001874 ACACTAATCATGATGGCTATGCAG 58.998 41.667 9.46 0.07 0.00 4.41
719 720 3.133691 CGACCCACACTAATCATGATGG 58.866 50.000 9.46 6.38 0.00 3.51
726 727 1.525442 CCCCCGACCCACACTAATC 59.475 63.158 0.00 0.00 0.00 1.75
750 751 2.799916 GCCGTCGTCACTCGTCAC 60.800 66.667 0.00 0.00 40.80 3.67
751 752 4.034258 GGCCGTCGTCACTCGTCA 62.034 66.667 0.00 0.00 40.80 4.35
752 753 3.664223 GAGGCCGTCGTCACTCGTC 62.664 68.421 0.00 0.00 40.80 4.20
753 754 3.735029 GAGGCCGTCGTCACTCGT 61.735 66.667 0.00 0.00 40.80 4.18
754 755 3.733960 TGAGGCCGTCGTCACTCG 61.734 66.667 0.00 0.00 41.41 4.18
793 794 4.954970 CTGCTTGCGGTGGGTGGT 62.955 66.667 0.00 0.00 0.00 4.16
796 797 4.892965 TTGCTGCTTGCGGTGGGT 62.893 61.111 0.00 0.00 46.63 4.51
797 798 3.149338 TTTTGCTGCTTGCGGTGGG 62.149 57.895 0.00 0.00 46.63 4.61
798 799 1.662446 CTTTTGCTGCTTGCGGTGG 60.662 57.895 0.00 0.00 46.63 4.61
799 800 0.248990 TTCTTTTGCTGCTTGCGGTG 60.249 50.000 0.00 0.00 46.63 4.94
800 801 0.675633 ATTCTTTTGCTGCTTGCGGT 59.324 45.000 0.00 0.00 46.63 5.68
865 904 4.467107 ACCTCCTCCTCCTCCGGC 62.467 72.222 0.00 0.00 0.00 6.13
903 949 1.048601 AAAGACGAGGAGGTTCTGCA 58.951 50.000 0.00 0.00 0.00 4.41
915 964 4.090090 AGAAGAGGAGGATGAAAAGACGA 58.910 43.478 0.00 0.00 0.00 4.20
917 966 6.048732 AGAAGAAGAGGAGGATGAAAAGAC 57.951 41.667 0.00 0.00 0.00 3.01
922 971 3.379452 GGGAGAAGAAGAGGAGGATGAA 58.621 50.000 0.00 0.00 0.00 2.57
925 977 1.061735 GGGGGAGAAGAAGAGGAGGAT 60.062 57.143 0.00 0.00 0.00 3.24
931 983 7.489239 CCTATAAATAGGGGGAGAAGAAGAG 57.511 44.000 7.99 0.00 44.97 2.85
1033 1091 1.845809 GAGGTCTGTTGTTGGCGCTG 61.846 60.000 7.64 0.00 0.00 5.18
1077 1171 0.807667 GAAGACATGATCGCTGGCGT 60.808 55.000 14.55 2.59 40.74 5.68
1079 1173 0.179062 AGGAAGACATGATCGCTGGC 60.179 55.000 0.00 0.00 0.00 4.85
1136 1239 1.428869 AGGACAGCACCTTCTTCACT 58.571 50.000 0.00 0.00 36.86 3.41
1299 1429 3.137446 AGCAGCAACAAGAAGAGACAT 57.863 42.857 0.00 0.00 0.00 3.06
1473 1695 2.813061 CAAACACCTTGAAGGCAACAG 58.187 47.619 11.96 0.00 39.63 3.16
1634 1884 4.387026 AAATGGAATGGGTCAAGTCTCA 57.613 40.909 0.00 0.00 0.00 3.27
1635 1885 5.243730 TCAAAAATGGAATGGGTCAAGTCTC 59.756 40.000 0.00 0.00 0.00 3.36
1636 1886 5.011023 GTCAAAAATGGAATGGGTCAAGTCT 59.989 40.000 0.00 0.00 0.00 3.24
1637 1887 5.011023 AGTCAAAAATGGAATGGGTCAAGTC 59.989 40.000 0.00 0.00 0.00 3.01
1843 2151 3.072330 TGGTGTGTGAGTGGTTGATACAT 59.928 43.478 0.00 0.00 0.00 2.29
1844 2152 2.436173 TGGTGTGTGAGTGGTTGATACA 59.564 45.455 0.00 0.00 0.00 2.29
1845 2153 3.120321 TGGTGTGTGAGTGGTTGATAC 57.880 47.619 0.00 0.00 0.00 2.24
1846 2154 3.847671 TTGGTGTGTGAGTGGTTGATA 57.152 42.857 0.00 0.00 0.00 2.15
1893 2218 2.658285 CTTGGCTCAATCCTGGCATTA 58.342 47.619 0.00 0.00 38.51 1.90
1905 2232 1.553690 GCTCCTGGTACCTTGGCTCA 61.554 60.000 14.36 0.00 0.00 4.26
1912 2239 0.106918 CTCTCGAGCTCCTGGTACCT 60.107 60.000 14.36 0.00 0.00 3.08
2238 2565 2.190578 GGCTGTCCCGCTGCTAAT 59.809 61.111 0.00 0.00 41.14 1.73
2259 2586 2.672651 TGCACCACCGGCTCATTG 60.673 61.111 0.00 0.00 0.00 2.82
2310 2637 1.229359 CTCCATGGCCTGCTGGATT 59.771 57.895 18.68 0.00 40.66 3.01
2355 2682 2.752358 CACTGGCTGGCCTTCTCA 59.248 61.111 13.05 0.00 36.94 3.27
2433 2760 3.321682 TCCTTCCCAATGTTTTGCAAGAG 59.678 43.478 0.00 0.00 0.00 2.85
2436 2763 4.450053 CTTTCCTTCCCAATGTTTTGCAA 58.550 39.130 0.00 0.00 0.00 4.08
2686 3041 7.147846 ACCACTTGAAATCTGAATGTTCTTTGT 60.148 33.333 0.00 0.00 0.00 2.83
2853 3377 6.204688 CAGAGGTAGTAGCATTTTTGTGACAA 59.795 38.462 0.00 0.00 0.00 3.18
2869 3393 5.632034 AGAAAAACAAGTCCAGAGGTAGT 57.368 39.130 0.00 0.00 0.00 2.73
2870 3394 6.318900 ACAAAGAAAAACAAGTCCAGAGGTAG 59.681 38.462 0.00 0.00 0.00 3.18
2871 3395 6.184789 ACAAAGAAAAACAAGTCCAGAGGTA 58.815 36.000 0.00 0.00 0.00 3.08
2872 3396 5.016831 ACAAAGAAAAACAAGTCCAGAGGT 58.983 37.500 0.00 0.00 0.00 3.85
2873 3397 5.125417 TGACAAAGAAAAACAAGTCCAGAGG 59.875 40.000 0.00 0.00 0.00 3.69
2874 3398 6.030228 GTGACAAAGAAAAACAAGTCCAGAG 58.970 40.000 0.00 0.00 0.00 3.35
2875 3399 5.475220 TGTGACAAAGAAAAACAAGTCCAGA 59.525 36.000 0.00 0.00 0.00 3.86
2876 3400 5.708948 TGTGACAAAGAAAAACAAGTCCAG 58.291 37.500 0.00 0.00 0.00 3.86
2877 3401 5.713792 TGTGACAAAGAAAAACAAGTCCA 57.286 34.783 0.00 0.00 0.00 4.02
2878 3402 7.414814 TTTTGTGACAAAGAAAAACAAGTCC 57.585 32.000 10.91 0.00 32.75 3.85
2885 3409 6.144724 CCAGACGTTTTTGTGACAAAGAAAAA 59.855 34.615 10.91 0.00 38.35 1.94
2886 3410 5.631512 CCAGACGTTTTTGTGACAAAGAAAA 59.368 36.000 10.91 0.29 29.68 2.29
2887 3411 5.048643 TCCAGACGTTTTTGTGACAAAGAAA 60.049 36.000 10.91 1.02 0.00 2.52
2888 3412 4.456222 TCCAGACGTTTTTGTGACAAAGAA 59.544 37.500 10.91 6.27 0.00 2.52
2889 3413 4.004314 TCCAGACGTTTTTGTGACAAAGA 58.996 39.130 10.91 3.89 0.00 2.52
2890 3414 4.142687 ACTCCAGACGTTTTTGTGACAAAG 60.143 41.667 10.91 2.73 0.00 2.77
2891 3415 3.754323 ACTCCAGACGTTTTTGTGACAAA 59.246 39.130 6.66 6.66 0.00 2.83
2892 3416 3.340034 ACTCCAGACGTTTTTGTGACAA 58.660 40.909 0.00 0.00 0.00 3.18
2893 3417 2.980568 ACTCCAGACGTTTTTGTGACA 58.019 42.857 0.00 0.00 0.00 3.58
2894 3418 4.117685 ACTACTCCAGACGTTTTTGTGAC 58.882 43.478 0.00 0.00 0.00 3.67
2895 3419 4.395959 ACTACTCCAGACGTTTTTGTGA 57.604 40.909 0.00 0.00 0.00 3.58
2896 3420 7.878477 TTATACTACTCCAGACGTTTTTGTG 57.122 36.000 0.00 0.00 0.00 3.33
2897 3421 9.498176 AAATTATACTACTCCAGACGTTTTTGT 57.502 29.630 0.00 0.00 0.00 2.83
2909 3433 9.665264 GCAGCAACAATTAAATTATACTACTCC 57.335 33.333 0.00 0.00 0.00 3.85
2910 3434 9.665264 GGCAGCAACAATTAAATTATACTACTC 57.335 33.333 0.00 0.00 0.00 2.59
2911 3435 9.184523 TGGCAGCAACAATTAAATTATACTACT 57.815 29.630 0.00 0.00 0.00 2.57
2912 3436 9.796120 TTGGCAGCAACAATTAAATTATACTAC 57.204 29.630 0.00 0.00 0.00 2.73
3046 3843 4.409570 CACTCTGCATTGCTATCAAACAC 58.590 43.478 10.49 0.00 35.56 3.32
3071 3868 5.994668 TGCACACAACACTATGTTTCATAGA 59.005 36.000 19.38 0.00 38.77 1.98
3095 3892 0.393077 ACGCTGCTAAACCTGTCTGT 59.607 50.000 0.00 0.00 0.00 3.41
3103 3900 0.385974 CAACAGGCACGCTGCTAAAC 60.386 55.000 9.31 0.00 44.28 2.01
3168 3971 9.991388 GAAGATATATAGCTACGACTTTGTAGG 57.009 37.037 0.00 0.00 41.70 3.18
3289 4106 2.877097 TGGCCAAGAGCATACTCAAA 57.123 45.000 0.61 0.00 46.09 2.69
3296 4113 4.142790 CTCATTAAGATGGCCAAGAGCAT 58.857 43.478 10.96 0.00 46.50 3.79
3364 4181 4.214310 TGAAATTTCACTGGAGCAAGGAA 58.786 39.130 16.91 0.00 31.01 3.36
3448 4265 4.568152 AAGACGTTTTTGCAAGCTATGT 57.432 36.364 0.00 0.68 0.00 2.29
3449 4266 8.736742 CAATATAAGACGTTTTTGCAAGCTATG 58.263 33.333 0.00 0.00 0.00 2.23
3450 4267 8.458843 ACAATATAAGACGTTTTTGCAAGCTAT 58.541 29.630 0.00 0.00 0.00 2.97
3451 4268 7.748683 CACAATATAAGACGTTTTTGCAAGCTA 59.251 33.333 0.00 0.00 0.00 3.32
3452 4269 6.582295 CACAATATAAGACGTTTTTGCAAGCT 59.418 34.615 0.00 0.00 0.00 3.74
3453 4270 6.183359 CCACAATATAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
3454 4271 6.307800 CCCACAATATAAGACGTTTTTGCAAG 59.692 38.462 0.00 0.00 0.00 4.01
3455 4272 6.016192 TCCCACAATATAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
3456 4273 5.473846 TCCCACAATATAAGACGTTTTTGCA 59.526 36.000 0.00 0.00 0.00 4.08
3457 4274 5.798434 GTCCCACAATATAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
3458 4275 6.019152 CGTCCCACAATATAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
3459 4276 5.122711 CCGTCCCACAATATAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3460 4277 4.632688 CCGTCCCACAATATAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3461 4278 4.081531 TCCGTCCCACAATATAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3462 4279 3.448301 TCCGTCCCACAATATAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3463 4280 3.025978 TCCGTCCCACAATATAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3481 4298 2.376109 TGTTAGCTTCTACTCCCTCCG 58.624 52.381 0.00 0.00 0.00 4.63
3543 4360 5.007034 TCTTCAACTCAAGACAAACCACAA 58.993 37.500 0.00 0.00 0.00 3.33
3553 4370 5.721960 AGTAGGCCTAATCTTCAACTCAAGA 59.278 40.000 15.83 0.00 36.82 3.02
3557 4374 8.204836 TCATTAAGTAGGCCTAATCTTCAACTC 58.795 37.037 15.83 0.00 0.00 3.01
3559 4376 8.910351 ATCATTAAGTAGGCCTAATCTTCAAC 57.090 34.615 15.83 1.24 0.00 3.18
3593 4410 8.604890 GCTACAACTTTAGTGAAGATACCATTC 58.395 37.037 0.99 0.00 38.77 2.67
3606 4423 6.769512 TCAGGAAATGAGCTACAACTTTAGT 58.230 36.000 0.00 0.00 32.77 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.